Query 024481
Match_columns 267
No_of_seqs 191 out of 1149
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:55:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00139 hypothetical protein; 100.0 2E-54 4.4E-59 391.8 22.5 247 14-267 60-320 (320)
2 TIGR02409 carnitine_bodg gamma 100.0 3E-32 6.4E-37 252.3 18.0 195 13-264 136-350 (366)
3 TIGR02410 carnitine_TMLD trime 100.0 3.8E-32 8.3E-37 251.1 18.1 205 13-264 128-346 (362)
4 PRK09553 tauD taurine dioxygen 100.0 5.3E-32 1.1E-36 241.8 14.3 212 13-264 41-268 (277)
5 cd00250 CAS_like Clavaminic ac 100.0 5.3E-29 1.1E-33 220.6 18.2 196 13-264 45-257 (262)
6 PF02668 TauD: Taurine catabol 100.0 1.4E-28 3.1E-33 215.7 11.2 196 14-264 38-257 (258)
7 COG2175 TauD Probable taurine 99.9 5.6E-26 1.2E-30 201.9 14.8 167 55-263 100-272 (286)
8 KOG3888 Gamma-butyrobetaine,2- 99.9 5.1E-25 1.1E-29 195.9 16.0 199 14-266 165-387 (407)
9 KOG3889 Predicted gamma-butyro 99.9 1.4E-24 3E-29 187.1 13.4 194 14-264 139-353 (371)
10 PRK02963 carbon starvation ind 99.9 9.2E-23 2E-27 181.9 14.6 172 23-261 101-301 (316)
11 PF08943 CsiD: CsiD; InterPro 98.2 4.4E-06 9.6E-11 72.6 7.7 142 56-263 140-291 (297)
12 PF13640 2OG-FeII_Oxy_3: 2OG-F 77.9 0.92 2E-05 33.5 0.6 31 235-265 66-97 (100)
13 smart00702 P4Hc Prolyl 4-hydro 71.6 5 0.00011 32.9 3.6 37 230-266 138-177 (178)
14 PF12851 Tet_JBP: Oxygenase do 67.5 6.3 0.00014 32.7 3.3 28 229-256 126-153 (171)
15 COG4340 Uncharacterized protei 57.8 6.5 0.00014 33.1 1.7 27 230-256 174-200 (226)
16 TIGR00113 queA S-adenosylmethi 55.1 7.2 0.00016 36.1 1.7 21 235-255 49-69 (344)
17 PF05721 PhyH: Phytanoyl-CoA d 54.8 15 0.00032 29.9 3.5 33 227-260 176-210 (211)
18 PF06940 DUF1287: Domain of un 52.7 7.9 0.00017 31.8 1.4 12 233-244 105-116 (164)
19 PRK00147 queA S-adenosylmethio 50.2 10 0.00022 35.1 1.8 20 235-254 50-69 (342)
20 PRK01424 S-adenosylmethionine: 49.6 10 0.00022 35.2 1.6 21 235-255 47-67 (366)
21 PF02547 Queuosine_synth: Queu 49.0 7.8 0.00017 35.8 0.9 21 235-255 49-69 (341)
22 PF08285 DPM3: Dolichol-phosph 48.5 12 0.00027 27.7 1.7 32 82-113 59-90 (91)
23 COG0809 QueA S-adenosylmethion 46.4 12 0.00026 34.3 1.7 19 235-253 50-68 (348)
24 COG5285 Protein involved in bi 46.1 17 0.00038 32.7 2.6 33 227-260 189-222 (299)
25 smart00702 P4Hc Prolyl 4-hydro 44.4 18 0.00038 29.6 2.3 38 53-90 95-134 (178)
26 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 44.2 14 0.0003 31.3 1.6 33 231-263 153-192 (195)
27 TIGR02408 ectoine_ThpD ectoine 40.9 28 0.0006 30.9 3.1 33 230-263 210-244 (277)
28 PRK05467 Fe(II)-dependent oxyg 39.2 27 0.0006 30.3 2.7 34 231-265 141-175 (226)
29 PF05118 Asp_Arg_Hydrox: Aspar 38.1 27 0.00058 28.5 2.4 32 231-263 124-156 (163)
30 PF13759 2OG-FeII_Oxy_5: Putat 36.6 39 0.00084 24.9 2.9 37 228-265 63-100 (101)
31 KOG4841 Dolichol-phosphate man 33.0 32 0.0007 25.2 1.8 32 82-113 63-94 (95)
32 PRK05467 Fe(II)-dependent oxyg 33.0 45 0.00097 29.0 3.1 37 53-89 92-137 (226)
33 PF07892 DUF1667: Protein of u 31.9 50 0.0011 24.0 2.6 32 213-244 39-70 (82)
34 KOG0464 Elongation factor G [T 31.3 30 0.00066 33.0 1.8 39 65-106 452-490 (753)
35 PF00877 NLPC_P60: NlpC/P60 fa 28.4 33 0.00072 25.3 1.3 15 231-245 48-62 (105)
36 PLN00052 prolyl 4-hydroxylase; 27.8 58 0.0013 29.7 3.0 35 229-263 204-247 (310)
37 PF09713 A_thal_3526: Plant pr 26.2 84 0.0018 20.9 2.8 20 89-108 33-52 (54)
38 TIGR02219 phage_NlpC_fam putat 26.0 47 0.001 26.1 1.9 11 234-244 76-86 (134)
39 TIGR01698 PUNP purine nucleoti 25.2 51 0.0011 28.9 2.1 31 230-260 94-124 (237)
40 PHA02813 hypothetical protein; 24.8 61 0.0013 30.0 2.6 37 53-89 106-144 (354)
41 TIGR01762 chlorin-enz chlorina 22.5 93 0.002 27.9 3.3 32 230-262 208-241 (288)
42 PRK10838 spr outer membrane li 21.9 53 0.0011 27.7 1.5 12 233-244 127-138 (190)
43 PF07625 DUF1586: Protein of u 21.7 37 0.0008 18.1 0.3 13 13-25 4-16 (22)
44 PF00446 GnRH: Gonadotropin-re 21.6 37 0.00079 14.6 0.2 8 231-238 3-10 (10)
45 PF12990 DUF3874: Domain of un 20.2 27 0.00057 24.8 -0.6 32 71-102 10-41 (73)
No 1
>PLN00139 hypothetical protein; Provisional
Probab=100.00 E-value=2e-54 Score=391.77 Aligned_cols=247 Identities=36% Similarity=0.629 Sum_probs=215.6
Q ss_pred EEeecCCCC-CCcchhHHHHHhhhcc-----ccCcchhhhccccCC-------ccccccccccCCCCceEEEeeeecCCC
Q 024481 14 LLATRSCPT-SAVLLPEATLLVEFLL-----PMNLHLIVTFLFTRK-------WLWLERYMLLPQFPSKLFFFCEVEPVS 80 (267)
Q Consensus 14 ~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~t~~-------~lwHtD~~y~~~~P~~~~l~c~~~p~~ 80 (267)
++-++|.|. ++..+..++.++|... ...++.+...+||+. ..||+|++|.+.||.+++|||+++|++
T Consensus 60 avlfRG~~i~~~~~f~~~a~~fg~~~~~y~~~~~r~~v~~~v~t~te~P~~~~i~~H~E~sy~~~pP~~~~f~C~~~p~~ 139 (320)
T PLN00139 60 AVLLRGFDVKNAEDFNDIIEAFGWDDIRYVGPAPRTHVYKRIWTANEGPLSEFIYYHHEMVLIKESPKKVILFCEIPPPE 139 (320)
T ss_pred EEEECCCCCCCHHHHHHHHHHhCccccccCCCCCcccccccEecCCCCCccccccccccccCccCCCceEEEEecccCCC
Confidence 566889997 5678889999997632 334554555666642 249999999999999999999999999
Q ss_pred CCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccC
Q 024481 81 GGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMED 160 (267)
Q Consensus 81 GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~d 160 (267)
||+|+|||+++||+.|+++.|+++++|+++||+|.|+++......++.+.+|+++|+|+|+++||++|++.|+.++|.+|
T Consensus 140 GGeT~~aD~~~v~~~L~~~~p~~~e~l~~~gv~y~r~~~~~~~~~~~~~~sWq~~F~t~d~~eve~~~~~~g~~~eW~~d 219 (320)
T PLN00139 140 GGQTPFVPSFRVTERMLEEFPEAVEEVEAKGLKYTFTALSKNDTSSMRGRGWEDAFGTSDKAEAERRAKALGMDMEWLPN 219 (320)
T ss_pred CCCCeeecHHHHHHHhhhhCHHHHHHHHhcCceEEEeccccccccccccchHHHHhCCCCHHHHHHHHHHcCCeEEEcCC
Confidence 99999999999999999999999999999999999988765444456678999999999999999999999999999999
Q ss_pred CceEEEEeeeCeeEecC-CCCceEEeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHhhccEEEeeccCCC
Q 024481 161 GGVKTVLGPIPAVTYDK-IRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGD 239 (267)
Q Consensus 161 g~~~~~~~~~P~v~~hP-~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~~~~~~~~~Wq~GD 239 (267)
|.+++.....|+++.|| .||+++|||++..+|.. .+..++||||++|+.++|++|.++++++++.+.||+||
T Consensus 220 g~l~~~~~~~~~~~~~~~~tg~~~wFN~~~~~h~~-------~~~~~~fGDGs~i~~~~l~~i~~~~~~~~~~~~Wq~GD 292 (320)
T PLN00139 220 GGVKTILGPRSLTKVFDGRKGRRMWFNTVVGMHGK-------ESSSAMLADGTEIPENFVKRCGQIIEEESIQFKWEKGD 292 (320)
T ss_pred CcEEEEEeeccceeccCCCCCCEEEeechhhhhcc-------CCCCceecCCCcCCHHHHHHHHHHHHHhhccCCCCCCC
Confidence 98776546668787755 89999999999887742 23467899999999999999999999999999999999
Q ss_pred EEEEeCcccccccCCCCCcceeeecccC
Q 024481 240 VLLIDNLAVLHARRSSSRPRHILASLCK 267 (267)
Q Consensus 240 vli~DN~rvlHgR~~f~g~R~ll~~~~~ 267 (267)
|||+||++++|||.||+|+|+++|+|++
T Consensus 293 vl~iDN~~~~HGR~pf~g~Rrvlv~m~~ 320 (320)
T PLN00139 293 VLFLDNLALLHGRRPSLPPRKVLVATCK 320 (320)
T ss_pred EEEEeChhhhcCCCCCCCCceEEEEecC
Confidence 9999999999999999999999999986
No 2
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=100.00 E-value=3e-32 Score=252.32 Aligned_cols=195 Identities=20% Similarity=0.275 Sum_probs=148.4
Q ss_pred eEEeecCCCCCCcchhHHHHHhhhccccCcchh---------hhccccCCcc-ccccccccCCCCceEEEeeeecCCCCC
Q 024481 13 RLLATRSCPTSAVLLPEATLLVEFLLPMNLHLI---------VTFLFTRKWL-WLERYMLLPQFPSKLFFFCEVEPVSGG 82 (267)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~t~~~l-wHtD~~y~~~~P~~~~l~c~~~p~~GG 82 (267)
-++-++|+|.++..+..++.++|++++++++.+ .+.+||+..+ ||+|++|.+.||++++|+|+++|.+||
T Consensus 136 G~v~~rg~~~~~~~~~~~~~~~G~~~~~~~g~~~~v~~~~~~~~~~yt~~~l~~HtD~~y~~~pP~~~~L~c~~~~~~GG 215 (366)
T TIGR02409 136 GIAVLKGAPTKPGAVEKLGKRIGFIRETNYGLLFEVRLKADANNLAYTNGGLPFHTDNPYRDHPPGLQLLHCLESTVEGG 215 (366)
T ss_pred cEEEEeCCCCCHHHHHHHHHHhccccccCCCCeEEEEecCCccccccccccccccccCCccCCCCceeeeeecccCCCCc
Confidence 477899999999999999999999998887753 2456877554 899999999999999999999999999
Q ss_pred CCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCCc
Q 024481 83 DTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGG 162 (267)
Q Consensus 83 eT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~ 162 (267)
+|.|+|+++||+.|+++.|+.++.|....+.|... .. +.
T Consensus 216 ~T~~~d~~~~~~~L~~~~p~~~~~L~~~~~~~~~~-~~---------------------------------------~~- 254 (366)
T TIGR02409 216 DSLFVDGFAVAEALRVENPEAFRILTSTPVEFREE-GD---------------------------------------DV- 254 (366)
T ss_pred ceeeeeHHHHHHHHhHhCHHHHHHHhcCccceEEc-CC---------------------------------------Cc-
Confidence 99999999999999999999999999766555421 00 00
Q ss_pred eEEEEeeeCeeEecCCCCc--eEEeeccchhccccccCCCCCCcccccCCCCCCcH---HHHHHHHHHh--hccEEEeec
Q 024481 163 VKTVLGPIPAVTYDKIRQR--KIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPE---DIVYNLMKIL--EEECVAIPW 235 (267)
Q Consensus 163 ~~~~~~~~P~v~~hP~TG~--~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~---~~l~~l~~~~--~~~~~~~~W 235 (267)
. .....||+|+.||. |+ .+.||+.....+ ++-...... ++++.|.+.+ ++++++|+|
T Consensus 255 ~-~~~~~~Pvi~~~~~-g~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~al~~l~~~~~~p~~~~~~~l 318 (366)
T TIGR02409 255 H-DLRARHPVIELDDD-GEVVKIRFNNASRDWF--------------FDVPPSRVQDFYAAYRRFTELIEQPRFKFTFKL 318 (366)
T ss_pred e-eeEeccCEEEECCC-CCEEEEEeCCcccCcc--------------CCCCHHHHHHHHHHHHHHHHHHcCcccEEEEEc
Confidence 0 02347999999995 76 556665211111 000001111 2344444433 478999999
Q ss_pred cCCCEEEEeCcccccccCCCC---Ccceeeec
Q 024481 236 QNGDVLLIDNLAVLHARRSSS---RPRHILAS 264 (267)
Q Consensus 236 q~GDvli~DN~rvlHgR~~f~---g~R~ll~~ 264 (267)
++||||||||+++||||++|+ |+|++.++
T Consensus 319 ~pGd~vi~DN~rvlH~R~af~~~~~~R~L~g~ 350 (366)
T TIGR02409 319 EPGDLVLFDNTRLLHARDAFSNPEGKRHLQGC 350 (366)
T ss_pred CCCcEEEEeceEEeecCCCcCCCCCceEEEEE
Confidence 999999999999999999996 78888775
No 3
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=100.00 E-value=3.8e-32 Score=251.10 Aligned_cols=205 Identities=16% Similarity=0.153 Sum_probs=152.2
Q ss_pred eEEeecCCCCCCcchhHHHHHhhhccccCcchh---------hhccccCCcc-ccccccccCCCCceEEEeeeecCCCCC
Q 024481 13 RLLATRSCPTSAVLLPEATLLVEFLLPMNLHLI---------VTFLFTRKWL-WLERYMLLPQFPSKLFFFCEVEPVSGG 82 (267)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~t~~~l-wHtD~~y~~~~P~~~~l~c~~~p~~GG 82 (267)
-++-++|+|.+++.+..++.++|++++++++.+ .+.+||+..+ ||||++|.+.||++++|+|+++|.+||
T Consensus 128 G~v~~~g~~~~~~~~~~~a~riG~~r~t~~g~~~~v~~~~~~~~~ayt~~~l~~HtD~~y~~~pp~~~~L~c~~~~~~GG 207 (362)
T TIGR02410 128 GFTFVDNVPVTPEATEKLCERISIIRPTHYGGFWDFTSDLSKNDTAYTSLAIDMHTDGTYWDETPGLQLFHCLTHDGTGG 207 (362)
T ss_pred CEEEEcCCCCCHHHHHHHHHHhccceecCCCCeEEEEecCCCcccccccCCccccccCCCCCCCCcceeEeeeecCCCCC
Confidence 477899999999999999999999999998753 3445776444 799999999999999999999999999
Q ss_pred CCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCCc
Q 024481 83 DTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGG 162 (267)
Q Consensus 83 eT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~ 162 (267)
+|.|+|+++||+.|++++||.++.|.+..+.|..... . +..
T Consensus 208 ~t~~~d~~~~~~~L~~~~pe~~~~L~~~~~~~~~~~~--~-------------------------------------~~~ 248 (362)
T TIGR02410 208 ETVLVDGFYCAEQLRKEAPEDFELLTKVPIPHHYSGE--S-------------------------------------DSV 248 (362)
T ss_pred ceeeeeHHHHHHHHhhhChHHHHHHhcCccceEEccC--c-------------------------------------Cce
Confidence 9999999999999999999999999987766542100 0 000
Q ss_pred eEEEEeeeCeeEecCCCCceEEeeccchhccccccCCCCCCcccccCCCCCC--cHHHHHHHHHHh--hccEEEeeccCC
Q 024481 163 VKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPY--PEDIVYNLMKIL--EEECVAIPWQNG 238 (267)
Q Consensus 163 ~~~~~~~~P~v~~hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~--~~~~l~~l~~~~--~~~~~~~~Wq~G 238 (267)
.......||+|+.||.+|+...++......+... .+.++.-+.. ..++|+.|.+.+ +++++.|+|+||
T Consensus 249 ~~~~~~~~Pvi~~~p~~G~~~~ir~~~~~r~~~~--------~~~~~~~~~~~~~~~Al~~l~~~~~~p~~~~~~~l~pG 320 (362)
T TIGR02410 249 FIHPDYPQPVLTLDPSTGELTQIRWNNSDRAVMD--------CLNWSSPYDVPKFYKAIRRFNKIITDPDNEIEFKLRPG 320 (362)
T ss_pred eeeeccCCCEEEecCCCCcEEEEEcCCCcccccc--------cCCCCCHHHHHHHHHHHHHHHHHhcChhcEEEEEcCCc
Confidence 0012236899999999999754432111110000 0011100011 124555665544 468999999999
Q ss_pred CEEEEeCcccccccCCCCCcceeeec
Q 024481 239 DVLLIDNLAVLHARRSSSRPRHILAS 264 (267)
Q Consensus 239 Dvli~DN~rvlHgR~~f~g~R~ll~~ 264 (267)
|||||||+|+||||++|+|.|++.++
T Consensus 321 d~vi~DN~rvLHgRtaf~g~R~L~G~ 346 (362)
T TIGR02410 321 TVLIFDNWRVLHSRTSFTGYRRMCGC 346 (362)
T ss_pred cEEEEeeEEEeecCCCcCCceEEEEE
Confidence 99999999999999999999998875
No 4
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=99.98 E-value=5.3e-32 Score=241.80 Aligned_cols=212 Identities=17% Similarity=0.145 Sum_probs=141.8
Q ss_pred eEEeecCCCCCCcchhHHHHHhhhccc-cCcchh--h------hcccc---CCccccccccccCCCCceEEEeeeecCCC
Q 024481 13 RLLATRSCPTSAVLLPEATLLVEFLLP-MNLHLI--V------TFLFT---RKWLWLERYMLLPQFPSKLFFFCEVEPVS 80 (267)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~------~~~~t---~~~lwHtD~~y~~~~P~~~~l~c~~~p~~ 80 (267)
-++-++|.|-++..+.+++.++|+++. ...+.. . ++.-. +...||+|++|.+.||.+++|||+++|++
T Consensus 41 Gvlvfr~q~l~~~~~~~~~~~~G~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~wHtD~sy~~~pp~~~~L~~~~~p~~ 120 (277)
T PRK09553 41 QVLFFRDQPITPQQQRDLAARFGDLHIHPVYPHAEGVPEIIVLDTHNDNPPDNDNWHTDVTFIETPPLGAILAAKQLPST 120 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCccCCCCCCCCCCCeEEEEeccCCCCCCCCCCeecccCeeCCCceeEEEEEecCCC
Confidence 367889999998889999999999862 221111 0 11100 12469999999999999999999999999
Q ss_pred CCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccC
Q 024481 81 GGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMED 160 (267)
Q Consensus 81 GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~d 160 (267)
||+|.|||+++||++|+ ++++++|++..+.|. +..... ...+...+.. ...|...
T Consensus 121 GG~T~fad~~~ay~~L~---~~~~~~l~~l~~~h~--~~~~~~---------~~~~~~~~~~-----------~~~~~~~ 175 (277)
T PRK09553 121 GGDTLWASGIAAYEALS---APFRQLLSGLTAEHD--FRKSFP---------EYKYRKTEEE-----------HQRWEEA 175 (277)
T ss_pred CCccHhhhHHHHHHhCC---HHHHHHhcCcEEEEc--chhhcc---------cccccccccc-----------ccccccc
Confidence 99999999999999999 788899997766663 111000 0000000000 0000000
Q ss_pred CceEEEEeeeCeeEecCCCCceEEeec-cchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh--hccEEEeeccC
Q 024481 161 GGVKTVLGPIPAVTYDKIRQRKIWFNS-IVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECVAIPWQN 237 (267)
Q Consensus 161 g~~~~~~~~~P~v~~hP~TG~~~lfn~-~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~--~~~~~~~~Wq~ 237 (267)
. .......||+|++||+||++.+|.+ .....+ .|-..+.++++++.|.+.+ ++++|+|+|++
T Consensus 176 ~-~~~~~~~hPlVr~hp~tG~k~L~~n~~~~~~i--------------~gl~~~es~~ll~~L~~~~~~p~~~~~~~w~~ 240 (277)
T PRK09553 176 V-AKNPPLLHPVVRTHPVSGRQALFVNEGFTTRI--------------VDLSEKESEALLGFLFAHITKPEFQVRWRWQP 240 (277)
T ss_pred c-ccCCCCCCCeEEeCCCCCceeEEeccccccEe--------------CCCCHHHHHHHHHHHHHHhcCcCeEEEEecCC
Confidence 0 0001247999999999999986633 333333 1222244566666666543 67999999999
Q ss_pred CCEEEEeCcccccccCCC-CCcceeeec
Q 024481 238 GDVLLIDNLAVLHARRSS-SRPRHILAS 264 (267)
Q Consensus 238 GDvli~DN~rvlHgR~~f-~g~R~ll~~ 264 (267)
||||||||+++||++.++ .+.+|++-+
T Consensus 241 GD~viwDNr~~~H~a~~~~~~~~R~~~R 268 (277)
T PRK09553 241 NDVAIWDNRVTQHYANADYLPQRRIMHR 268 (277)
T ss_pred CCEEEEcCcceeEecccCCCCCceEEEE
Confidence 999999999999999865 445555543
No 5
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=99.96 E-value=5.3e-29 Score=220.55 Aligned_cols=196 Identities=17% Similarity=0.176 Sum_probs=148.0
Q ss_pred eEEeecCCCCCCcchhHHHHHhhhccccCcchh---------hhccccCCcc-ccccccccCCCCceEEEeeeecCCCCC
Q 024481 13 RLLATRSCPTSAVLLPEATLLVEFLLPMNLHLI---------VTFLFTRKWL-WLERYMLLPQFPSKLFFFCEVEPVSGG 82 (267)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~t~~~l-wHtD~~y~~~~P~~~~l~c~~~p~~GG 82 (267)
.++-+++.|+....+..+..++|+++.+.++.+ .+.+||+..+ ||||++|.+.||++++|+|+++|..||
T Consensus 45 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~t~~~l~~HtD~~y~~~pp~~~~L~cl~~~~~GG 124 (262)
T cd00250 45 GFAELEGAPLDPAALLGLAERIGFIRGTLYGDVVPVPGKENAQNGAYTNTLLPLHTDLAYHEYRPGLQILHCLRNTATGG 124 (262)
T ss_pred cEEEEeCCCCCHHHHHHHHHHhcccccccCCCeEEeccCCCccccccccCCcCccccCCCCCCCCceEEEEEeccCCCCC
Confidence 467789999999999999999999999998875 2334666544 799999999999999999999999999
Q ss_pred CCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCCc
Q 024481 83 DTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGG 162 (267)
Q Consensus 83 eT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~ 162 (267)
+|.|+|+.++|+.|.+++|+.++.|++..+.|.+.... .. ..
T Consensus 125 ~T~~vd~~~~~~~L~~~~pe~~~~L~~~~~~~~~~~~~----------------~~--------------------~~-- 166 (262)
T cd00250 125 ATLLVDGFRVALKLLREDPEAFELLSRVPVRHAYPGSS----------------GT--------------------MF-- 166 (262)
T ss_pred cceeeeHHHHHHHHHhhCHHHHHHHhCCCeeEEEcCCC----------------cc--------------------ce--
Confidence 99999999999999888899999999888877632110 00 00
Q ss_pred eEEEEeeeCeeEecCCCCceE-EeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHhhc--cEEEeeccCCC
Q 024481 163 VKTVLGPIPAVTYDKIRQRKI-WFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEE--ECVAIPWQNGD 239 (267)
Q Consensus 163 ~~~~~~~~P~v~~hP~TG~~~-lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~~~--~~~~~~Wq~GD 239 (267)
.....+|+|..|| |.++ .|+....... + . ++.+...++++.|.+.+.+ ++++|+|++||
T Consensus 167 --~~~~~~Pii~~~~--~~~~~r~~~~~~~~~---------p----~-~~~~~~~~al~~l~~~~~~~~~~~~~~l~~Gd 228 (262)
T cd00250 167 --SSYQLAPVLELDP--EDPVLRYNNYDNFSV---------P----F-DEVKEAYEALAELVALIEDPDNQLTVKLEPGD 228 (262)
T ss_pred --eeecccCEEEeCC--CccEEEEeCCCCCCC---------C----H-HHHHHHHHHHHHHHHHHcChhhEEEEEcCCCC
Confidence 0234799999999 5544 3432210000 0 0 0001334567777766654 89999999999
Q ss_pred EEEEeCcccccccCCCCC----cceeeec
Q 024481 240 VLLIDNLAVLHARRSSSR----PRHILAS 264 (267)
Q Consensus 240 vli~DN~rvlHgR~~f~g----~R~ll~~ 264 (267)
||||||+++||||++|++ .|++..+
T Consensus 229 ivi~DN~r~lHgR~~f~~~~~~~R~L~r~ 257 (262)
T cd00250 229 LLIFDNRRVLHGRTAFSPRYGGDRWLKGC 257 (262)
T ss_pred EEEEechhhhcCCCCCCCCCCCceEEEEE
Confidence 999999999999999974 4665554
No 6
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=99.95 E-value=1.4e-28 Score=215.66 Aligned_cols=196 Identities=23% Similarity=0.310 Sum_probs=140.4
Q ss_pred EEeecCCCCCCcchhHHHHHhhhc----cccCcchh----------hhcccc-----CCccccccccccCCCCceEEEee
Q 024481 14 LLATRSCPTSAVLLPEATLLVEFL----LPMNLHLI----------VTFLFT-----RKWLWLERYMLLPQFPSKLFFFC 74 (267)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------~~~~~t-----~~~lwHtD~~y~~~~P~~~~l~c 74 (267)
++-++|.|.+...+-++..++|.+ ...+.+.+ .+..++ ....||+|.+|.+.+|++++|+|
T Consensus 38 ~vvlrg~~~~~~~~~~~~~~~G~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~l~~HtD~~~~~~~p~~~~L~c 117 (258)
T PF02668_consen 38 FVVLRGFPLDPEQFEALASRLGPLMSHPRSTFYGDIWDVRSVIPEVEDSSYTPSSSNGELPWHTDGSYWPYPPDYLALYC 117 (258)
T ss_dssp EEEEESCTSSHHHHHHHHHHHSEBEEESSSSECCSCEEEEEECTTEETTTTSTTT-SSGEEEE-TTTTSTTEESEEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHhhCcccccccccccccccccccccccccccccCChhhhcccccccccCcccCCcceeEEEe
Confidence 566889998888899999999988 34332211 111222 23468999999999999999999
Q ss_pred eecCCCCCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCc
Q 024481 75 EVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLK 154 (267)
Q Consensus 75 ~~~p~~GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~ 154 (267)
+++|..||+|.|+|+.++|+.|+ |++++.|+ .++.|.+....... .
T Consensus 118 ~~~~~~GG~T~~~d~~~~~~~L~---pe~~~~L~-~~~~~~~~~~~~~~---------------~--------------- 163 (258)
T PF02668_consen 118 LRPAEEGGETTFADARAVYERLS---PELLERLQ-EPVRYIRRFPSSRY---------------E--------------- 163 (258)
T ss_dssp EEEESSSSEEEEEEHHHHHHCSH---HHHHHHHC-TTEEEEEECGGSSG---------------S---------------
T ss_pred eccCCCCCccccccHHHHHhhCC---HHHHhhhh-ceeeEeeccccccc---------------c---------------
Confidence 99999999999999999999999 99999998 48888765433110 0
Q ss_pred eEEccCCceEEEEeeeCeeEecCCCCceEEeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh--hccEEE
Q 024481 155 LEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECVA 232 (267)
Q Consensus 155 ~~w~~dg~~~~~~~~~P~v~~hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~--~~~~~~ 232 (267)
.. . ....+|+|..||.+|++++|++.....+... . ..+...++++.|.+.+ .++++.
T Consensus 164 -----~~--~-~~~~~Piv~~~p~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~l~~~l~~~~~~~~ 222 (258)
T PF02668_consen 164 -----EL--R-PSQSHPIVRTHPETGRKILYSSPFASRFQGP---------P----DLEESQEALAALDALLKDPEYTYR 222 (258)
T ss_dssp -----CC--S-EEEEEESEEEETTTTCEEECESTTEEEETTS---------C----EHHHHHHHHHHHHHHHTSGGGEEE
T ss_pred -----cc--C-CceEeeEEEEcCcccceeEecccceeeecCc---------C----ChHHHHHHHHHHHHHHhChhhccc
Confidence 00 1 3458999999999999998877511111000 0 0122345666666655 679999
Q ss_pred eeccCCCEEEEeCcccccccCCC---CCcceeeec
Q 024481 233 IPWQNGDVLLIDNLAVLHARRSS---SRPRHILAS 264 (267)
Q Consensus 233 ~~Wq~GDvli~DN~rvlHgR~~f---~g~R~ll~~ 264 (267)
|+|++||++||||+++||||++| .+.|.++.+
T Consensus 223 ~~~~~GDlli~dN~~~lHgR~~~~~~~~~R~L~R~ 257 (258)
T PF02668_consen 223 HRWQPGDLLIWDNHRVLHGRTAFDDPDGDRHLLRV 257 (258)
T ss_dssp EE--TTEEEEEETTTEEEEE--E-STTSSEEEEEE
T ss_pred ccCCCceEEEEcCCeeEecCCCCCCCCCCEEEEEe
Confidence 99999999999999999999999 567776654
No 7
>COG2175 TauD Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=5.6e-26 Score=201.88 Aligned_cols=167 Identities=21% Similarity=0.226 Sum_probs=117.4
Q ss_pred cccccccccCCCCceEEEeeeecCCCCCCCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEE--EeccCCCCCCCCCCCc
Q 024481 55 LWLERYMLLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTR--IYQEKDDLTSPTGRGW 132 (267)
Q Consensus 55 lwHtD~~y~~~~P~~~~l~c~~~p~~GGeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~--~~~~~~~~~~~~~~~w 132 (267)
.||+|.+|.+.||.+.+|+|++.|..||+|.|+|+.+||+.|++ .+++.+.+..+.|.. .+.... ...++
T Consensus 100 ~wH~D~~f~~~~p~~~~l~~v~~P~~gg~T~f~d~~~A~~~L~~---~~r~~~~gl~~~h~~~~~~~~~~-----~~~~~ 171 (286)
T COG2175 100 VWHTDVTFLETPPAGSILQAVELPSTGGDTLFADTAAAYETLPE---PLRELLRGLPAHHSNEERFPRER-----PSKTE 171 (286)
T ss_pred cCcccceeecCCCceeEEEEeecCCCCCCceeechHHHHHhccH---HHHHHHhcchhcccccccccccc-----cCcCc
Confidence 69999999999999999999999999999999999999999995 357777766555541 011100 01111
Q ss_pred cccccccCHHHHHHHHHhcCCceEEccCCceEEEEeeeCeeEecCCCCceEEeecc-chhccccccCCCCCCcccccCCC
Q 024481 133 KSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSI-VMAYTCWKDTQNDPVKAVTFGNG 211 (267)
Q Consensus 133 ~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~~~~~~~~~P~v~~hP~TG~~~lfn~~-~~~~~~~~~~~~~~~~~~~~gdg 211 (267)
... ..+++ +.+ ..+...||+|++||+||++++|.+. ....+.. ..
T Consensus 172 ~p~------~~~~~--------~~~------~~~~~~~Pvvr~hP~~g~~~l~~n~~~~~~i~g--------------~~ 217 (286)
T COG2175 172 RPH------ARFRE--------IVR------KNPPTEHPVVRTHPETGEKALFVNEGFTTRIVG--------------LP 217 (286)
T ss_pred Ccc------chhhh--------hhc------cCCcccCceEEeCCCcCceeeeecCCcceeccC--------------CC
Confidence 110 00000 000 1145689999999999999976443 4444322 22
Q ss_pred CCCcHHHHHHHHHHh--hccEEEeeccCCCEEEEeCcccccccCCCCCc-ceeee
Q 024481 212 SPYPEDIVYNLMKIL--EEECVAIPWQNGDVLLIDNLAVLHARRSSSRP-RHILA 263 (267)
Q Consensus 212 ~~~~~~~l~~l~~~~--~~~~~~~~Wq~GDvli~DN~rvlHgR~~f~g~-R~ll~ 263 (267)
...++++++.|.+.. ++++|+++||+||||||||+++||+|.+|.+. ||++-
T Consensus 218 ~~~~~~ll~~L~~~~~~pe~~~r~~wq~gDivIwDNr~~lH~a~~~~~~~~R~l~ 272 (286)
T COG2175 218 PKESEALLAELQAHLTDPENQYRHRWQPGDIVIWDNRATLHAATAFYADQRRILH 272 (286)
T ss_pred HHHHHHHHHHHHHhhcChhhEEEEecCCCCEEEEeCcceeeccccCCccceEEEE
Confidence 233456777777654 67999999999999999999999999999763 55543
No 8
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.93 E-value=5.1e-25 Score=195.87 Aligned_cols=199 Identities=19% Similarity=0.224 Sum_probs=148.9
Q ss_pred EEeecCCCCCCcchhHHHHHhhhccccCcchh---------hhccccCCccc-cccccccCCCCceEEEeeeecCCC-CC
Q 024481 14 LLATRSCPTSAVLLPEATLLVEFLLPMNLHLI---------VTFLFTRKWLW-LERYMLLPQFPSKLFFFCEVEPVS-GG 82 (267)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~t~~~lw-HtD~~y~~~~P~~~~l~c~~~p~~-GG 82 (267)
+|-++|.|.+...+-.+.+|+|||+.|..|.. .++||.++.|+ |||++|.+.+|++++|||++..++ ||
T Consensus 165 iA~lkGAP~~~~~v~kl~~RiG~irrT~yGe~F~V~ak~~asn~Ay~~~~LPlHTD~P~le~~PgvqiLH~l~qtes~gg 244 (407)
T KOG3888|consen 165 IAFLKGAPLDSGVVRKLGERIGFIRRTTYGETFEVQAKPDASNYAYLAGPLPLHTDLPYLEYPPGVQILHCLVQTESPGG 244 (407)
T ss_pred eEEEecCCCCchHHHHHHhhhcceeeeeccceEEEeecCCcccceeecCCCCcccCCcccccCCcceeeeeehhccCCCC
Confidence 67789999999999999999999999998885 67789999999 999999999999999999999987 99
Q ss_pred CCcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCCc
Q 024481 83 DTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGG 162 (267)
Q Consensus 83 eT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~ 162 (267)
...|+|++.|.+.|++++||.++.|...+|-|.-- +.|.. ..+ +| .
T Consensus 245 ~n~lvDgF~Va~~lr~~~pE~FeiL~~~pVd~~di---g~D~~--------~~~-----------------~f----h-- 290 (407)
T KOG3888|consen 245 MNLLVDGFYVAEQLRESHPEAFEILSSVPVDWIDI---GSDGD--------YYI-----------------EF----H-- 290 (407)
T ss_pred cceehhhHHHHHHHHhhCHHHHHHHhhcceeeEee---cCCcc--------ccc-----------------ch----h--
Confidence 99999999999999999999999999988877522 11100 000 00 0
Q ss_pred eEEEEeeeCeeEecCCCCceEEeeccchhccccccCCCCCCcccccCCCCCCcH-------HHHHHHHHHhhc--cEEEe
Q 024481 163 VKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPE-------DIVYNLMKILEE--ECVAI 233 (267)
Q Consensus 163 ~~~~~~~~P~v~~hP~TG~~~lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~-------~~l~~l~~~~~~--~~~~~ 233 (267)
.-..+|+|..+-+ |+-.-.|........ .| ..|. +.|+.+.+.+.+ +.++|
T Consensus 291 ---~i~r~~vI~ld~e-gr~~rIN~s~~~Rds------------~f----dvp~e~v~~~y~a~~~F~~~~~~~~n~~~f 350 (407)
T KOG3888|consen 291 ---NIWRAPVICLDDE-GRVVRINFSNPQRDS------------IF----DVPVEQVQPWYRALKLFVELANSFSNQFRF 350 (407)
T ss_pred ---hhhcCceEEEccc-ceEEEEecCCccccc------------cc----cCCHHHHHHHHHHHHHHHHHHhCcccceEE
Confidence 1136777777766 664322221111000 01 1222 244444444433 45999
Q ss_pred eccCCCEEEEeCcccccccCCCCC----cceeeeccc
Q 024481 234 PWQNGDVLLIDNLAVLHARRSSSR----PRHILASLC 266 (267)
Q Consensus 234 ~Wq~GDvli~DN~rvlHgR~~f~g----~R~ll~~~~ 266 (267)
+.++||+|+|||+|++|||++|+. .|++.+|-.
T Consensus 351 k~~~gdvv~FnN~RlLHgr~gy~~~~en~R~L~GaY~ 387 (407)
T KOG3888|consen 351 KTPPGDVVTFNNLRLLHGRTGYEDTPENQRHLVGAYF 387 (407)
T ss_pred ECCCCCEEEEcceeeeccccccccCccccceeeeeEe
Confidence 999999999999999999999953 788888754
No 9
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.92 E-value=1.4e-24 Score=187.12 Aligned_cols=194 Identities=19% Similarity=0.200 Sum_probs=152.4
Q ss_pred EEeecCCCCCCcchhHHHHHhhhccccCcchh---------hhccccCCccc-cccccccCCCCceEEEeeeecCCCCCC
Q 024481 14 LLATRSCPTSAVLLPEATLLVEFLLPMNLHLI---------VTFLFTRKWLW-LERYMLLPQFPSKLFFFCEVEPVSGGD 83 (267)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~t~~~lw-HtD~~y~~~~P~~~~l~c~~~p~~GGe 83 (267)
++-++|+|...+.-+.+..++-+++.+.||.. ...+||...+- |||.+|...+|++++|||+..+.+||+
T Consensus 139 i~fvd~V~pT~e~TEkl~~r~~pv~~TffG~mW~Fsd~p~~~DTAYtkl~lg~HTD~TYF~~~~GiQvfHCl~h~gtGG~ 218 (371)
T KOG3889|consen 139 IIFVDGVEPTSEATEKLCQRLVPVHDTFFGQMWVFSDEPAYEDTAYTKLELGPHTDGTYFDQTPGIQVFHCLTHAGTGGD 218 (371)
T ss_pred EEEEcCCCchhHHHHHHHHHhhHHHHhhhheeEEecCCCccccccceeeeecccCCCceeccCCCceEEEeecccCCCCc
Confidence 56789999898888899999999999999985 44567776665 999999999999999999999999999
Q ss_pred CcceeHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccCCce
Q 024481 84 TPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGV 163 (267)
Q Consensus 84 T~~aD~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~dg~~ 163 (267)
|.|+|++.+.+.|..+.||-++.|++.++... +-++.. +-..
T Consensus 219 t~lVDgfy~ae~l~~~~Pe~feiLc~v~i~he--YiE~~g------------------------------------e~h~ 260 (371)
T KOG3889|consen 219 TVLVDGFYCAEKLRNESPEDFEILCNVKISHE--YIEGSG------------------------------------ESHI 260 (371)
T ss_pred eEEEehHHHHHHHHhhChHhhhHhhcCccchh--hhcCCC------------------------------------cccc
Confidence 99999999999999999999999997665442 111100 0000
Q ss_pred EEEEeeeCeeEecCCCCceE--EeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh---------hccEEE
Q 024481 164 KTVLGPIPAVTYDKIRQRKI--WFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL---------EEECVA 232 (267)
Q Consensus 164 ~~~~~~~P~v~~hP~TG~~~--lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~---------~~~~~~ 232 (267)
. ....-|+|...|-+|+.. -||.-...-+ ..+|.+++.++++++ +++.+.
T Consensus 261 H-~v~~~p~v~~~p~~~e~~qiR~N~YDRAvf------------------nt~p~ae~~~fY~a~r~l~~i~r~p~n~~~ 321 (371)
T KOG3889|consen 261 H-SVSLEPPVIERPSFGEITQIRFNPYDRAVF------------------NTLPAAETIKFYEAYRKLSKICRNPDNSIE 321 (371)
T ss_pred e-eeccCCceEecCCCCceEEEEecccchhhh------------------ccCCHHHHHHHHHHHHHHHHHhcCccceEE
Confidence 1 112458899999999854 3443211111 146677777776655 568999
Q ss_pred eeccCCCEEEEeCcccccccCCCCCcceeeec
Q 024481 233 IPWQNGDVLLIDNLAVLHARRSSSRPRHILAS 264 (267)
Q Consensus 233 ~~Wq~GDvli~DN~rvlHgR~~f~g~R~ll~~ 264 (267)
++++||-|+++||+||+|||+.|+|.|.+.++
T Consensus 322 ikL~PGsvifiDNwRvLHgRe~ftGyRqmcGc 353 (371)
T KOG3889|consen 322 IKLRPGSVIFIDNWRVLHGRESFTGYRQMCGC 353 (371)
T ss_pred EEecCceEEEEeceeEecCcccccchhhhcce
Confidence 99999999999999999999999999998775
No 10
>PRK02963 carbon starvation induced protein; Validated
Probab=99.89 E-value=9.2e-23 Score=181.93 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=121.5
Q ss_pred CCcchhHHHHHhhh-ccccCcchhh----------------hccccCC--ccccccccccCCCCceEEEeeeec-CCCCC
Q 024481 23 SAVLLPEATLLVEF-LLPMNLHLIV----------------TFLFTRK--WLWLERYMLLPQFPSKLFFFCEVE-PVSGG 82 (267)
Q Consensus 23 ~~~~~~~~~~~~~~-~~~~~~~~~~----------------~~~~t~~--~lwHtD~~y~~~~P~~~~l~c~~~-p~~GG 82 (267)
..+.+..++.++++ |+++|++..- ++++++. .-+|||.+|...||++++|+|... ..+||
T Consensus 101 ~~~~~~~l~~~i~~~I~~t~fg~m~g~~ya~F~Vk~~~~~~~ya~~a~t~L~lHTD~pY~e~pPGlQlLl~~~~~~~~GG 180 (316)
T PRK02963 101 QADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELHNDGTYVEEITDYVLMMKIDEQNMQGG 180 (316)
T ss_pred CHHHHHHHHHHhhhccCCCCccccccceeeEEEEEecCCccchhhhhccCCCCcCCCCCccCCCCceeeeeeccCCCCCc
Confidence 56667899999999 9999998752 3334442 346999999999999987777765 47899
Q ss_pred CCcce--eHHHHHHHhhhhChHHHHHHHhCCeEEEEEeccCCCCCCCCCCCccccccccCHHHHHHHHHhcCCceEEccC
Q 024481 83 DTPLV--LSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLTSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMED 160 (267)
Q Consensus 83 eT~~a--D~~~~y~~L~~~~Pel~~~L~~~~v~~~~~~~~~~~~~~~~~~~w~~~f~~~d~~~~e~~~~~~g~~~~w~~d 160 (267)
+|.|+ |++++++.|++ +| |.+.+|.|...... +
T Consensus 181 eS~lVhvDGF~vAe~Lr~-~P-----Lt~~pV~~~~~~~~---------------------------------------~ 215 (316)
T PRK02963 181 NSLLLHLDDWEHLDHFFR-HP-----LARRPMRWAAPPSK---------------------------------------N 215 (316)
T ss_pred CeeeEcCCcHHHHHHHHh-Cc-----CcCCceeeeecCCC---------------------------------------c
Confidence 99998 99999999996 77 88888877521110 0
Q ss_pred CceEEEEeeeCeeEecCCCCceE-EeeccchhccccccCCCCCCcccccCCCCCCcHHHHHHHHHHh--hccEEEeeccC
Q 024481 161 GGVKTVLGPIPAVTYDKIRQRKI-WFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKIL--EEECVAIPWQN 237 (267)
Q Consensus 161 g~~~~~~~~~P~v~~hP~TG~~~-lfn~~~~~~~~~~~~~~~~~~~~~~gdg~~~~~~~l~~l~~~~--~~~~~~~~Wq~ 237 (267)
.. ....+|+|..++. |+.. -||.... . | -+.+....+..+.+.+ +++++.++++|
T Consensus 216 --~~-~~~~~PVI~lD~~-G~l~ir~nd~~~-~----------P-------~~~~~~~Y~~~f~~~L~~p~~~~~fkL~p 273 (316)
T PRK02963 216 --VS-KDVFHPVFDVDQQ-GRPVMRYIDQFV-Q----------P-------KDFEEGVWLSELSDALETSKGILSVPVPV 273 (316)
T ss_pred --cc-eeeecceEEECCC-CCEEEEEcCCCC-C----------C-------hHHHHHHHHHHHHHHHhCchhEEEEecCC
Confidence 00 2347899999874 8865 2331100 0 0 0011122244444433 56899999999
Q ss_pred CCEEEEeCcccccccCCCCC----ccee
Q 024481 238 GDVLLIDNLAVLHARRSSSR----PRHI 261 (267)
Q Consensus 238 GDvli~DN~rvlHgR~~f~g----~R~l 261 (267)
||+|++||+|+||||.+|+| .|++
T Consensus 274 Gd~vvfDN~RVLHGR~aF~~~~g~~R~L 301 (316)
T PRK02963 274 GKFLLINNLFWLHGRDRFTPHPDLRREL 301 (316)
T ss_pred ceEEEEeCeEEeeCCCCcCCCCCCceEE
Confidence 99999999999999999963 5666
No 11
>PF08943 CsiD: CsiD; InterPro: IPR015038 This group of proteins consists of various bacterial proteins pertaining to the non-haem Fe(II)-dependent oxygenase family. CsiD of Escherichia coli is induced on carbon starvation. Its expression is sigma-S dependent and additionally requires activation by cAMP-CRP []. The exact function and role of CsiD is unknown, but a putative role may involve the control of utilisation of gamma-aminobutyric acid and glutamate accumulation in general stress adaption []. ; GO: 0005506 iron ion binding; PDB: 2R6S_A 1JR7_A.
Probab=98.22 E-value=4.4e-06 Score=72.61 Aligned_cols=142 Identities=15% Similarity=0.205 Sum_probs=66.0
Q ss_pred ccccccccCCCCceEEEe-eeecCCCCCCCcceeHHHHHHHhhhhChHHH-HHHHhCCeEEEEEeccCCCCCCCCCCCcc
Q 024481 56 WLERYMLLPQFPSKLFFF-CEVEPVSGGDTPLVLSHIVYERMKESYPEFV-QQLEQDGLIYTRIYQEKDDLTSPTGRGWK 133 (267)
Q Consensus 56 wHtD~~y~~~~P~~~~l~-c~~~p~~GGeT~~aD~~~~y~~L~~~~Pel~-~~L~~~~v~~~~~~~~~~~~~~~~~~~w~ 133 (267)
-|+|.+|.....++++.. ..+.-.+||+|.+...-. |++|. .++ .-|.+..+.|.. |.+
T Consensus 140 LHnDGTyV~E~TD~vLMmKidEqN~~GG~S~lLHLDD-We~ld----~f~~hplak~~~~w~a--P~S------------ 200 (297)
T PF08943_consen 140 LHNDGTYVDERTDWVLMMKIDEQNMEGGESLLLHLDD-WEDLD----KFYNHPLAKQPFVWGA--PPS------------ 200 (297)
T ss_dssp EE-S-TTSSS---EEEEEEEEEES--B--EEEEEGGG--TTHH----HHHTSGGGGS-EEE----SS-------------
T ss_pred eecCCceeccccceeeeeeehhhhccCcceeeeeccc-HHHHH----HHhcCcccccceeecC--CCC------------
Confidence 399999999999997666 456677899999876322 34442 222 235555554431 110
Q ss_pred ccccccCHHHHHHHHHhcCCceEEccCCceEEEEeeeCe-eEecCCCCceE-EeeccchhccccccCCCCCCcccccCCC
Q 024481 134 SIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPA-VTYDKIRQRKI-WFNSIVMAYTCWKDTQNDPVKAVTFGNG 211 (267)
Q Consensus 134 ~~f~~~d~~~~e~~~~~~g~~~~w~~dg~~~~~~~~~P~-v~~hP~TG~~~-lfn~~~~~~~~~~~~~~~~~~~~~~gdg 211 (267)
.+ ......||+ +..+-. |+++ .|..... . |.+.
T Consensus 201 --------------------------KN--v~~~v~hpvFF~~d~~-g~P~m~fIDQF~-q----------P~n~----- 235 (297)
T PF08943_consen 201 --------------------------KN--VSYDVEHPVFFEEDSN-GKPHMSFIDQFV-Q----------PKNM----- 235 (297)
T ss_dssp --------------------------TT------EEE-S-EEE-TT-S-EEE---TTTE-E------------SH-----
T ss_pred --------------------------cc--ccceeeccccccccCC-CCeeEEEeeccC-C----------CCcH-----
Confidence 00 002347899 556655 8886 3432110 0 0000
Q ss_pred CCCcHHHHHHHHHHhh--ccEEEeeccCCCEEEEeCcccccccCCCCC----cceeee
Q 024481 212 SPYPEDIVYNLMKILE--EECVAIPWQNGDVLLIDNLAVLHARRSSSR----PRHILA 263 (267)
Q Consensus 212 ~~~~~~~l~~l~~~~~--~~~~~~~Wq~GDvli~DN~rvlHgR~~f~g----~R~ll~ 263 (267)
.....|..|.+.++ +.++.++.-+|++|+++|+..||||.+|+. .|.+|.
T Consensus 236 --eeg~~L~~ls~slE~s~~~~~v~vpvG~~lv~NN~fwLHGR~~F~~~~~L~RELmR 291 (297)
T PF08943_consen 236 --EEGLYLNELSESLENSKNKFSVPVPVGSFLVINNHFWLHGRDKFEPHPGLRRELMR 291 (297)
T ss_dssp --HHHHHHHHHHHHHHT-TT-EEE---TT-EEEEETTTEEEEE--B---TT-EEEEEE
T ss_pred --HHHHHHHHHHHHHhcCCCeEEEEcCCCcEEEEeeEEEEeccCCCCCChhHHHHHHH
Confidence 01235666666654 579999999999999999999999999954 465653
No 12
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=77.89 E-value=0.92 Score=33.46 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=24.8
Q ss_pred ccCCCEEEEeCcccccccCCC-CCcceeeecc
Q 024481 235 WQNGDVLLIDNLAVLHARRSS-SRPRHILASL 265 (267)
Q Consensus 235 Wq~GDvli~DN~rvlHgR~~f-~g~R~ll~~~ 265 (267)
-++|++|++++..++|+.++. .+.||+.+..
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v~~~~~R~~l~~ 97 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPVGEGGRRYSLTF 97 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE-EESEEEEEEE
T ss_pred CCCCEEEEEeCCCCeecCcccCCCCCEEEEEE
Confidence 899999999999999999998 5566655443
No 13
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=71.65 E-value=5 Score=32.91 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=30.8
Q ss_pred EEEeeccCCCEEEEeCc--ccccccCCCC-Ccceeeeccc
Q 024481 230 CVAIPWQNGDVLLIDNL--AVLHARRSSS-RPRHILASLC 266 (267)
Q Consensus 230 ~~~~~Wq~GDvli~DN~--rvlHgR~~f~-g~R~ll~~~~ 266 (267)
...+.=++|++|+|.|. +.+|+..|.. |.|..+..+.
T Consensus 138 ~~~v~P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~~~W~ 177 (178)
T smart00702 138 CATVKPKKGDLLFFPSGRGRSLHGVCPVTRGSRWAITGWI 177 (178)
T ss_pred ceEEeCCCCcEEEEeCCCCCccccCCcceeCCEEEEEEEE
Confidence 45777789999999998 7999999985 8888877654
No 14
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=67.47 E-value=6.3 Score=32.66 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=26.2
Q ss_pred cEEEeeccCCCEEEEeCcccccccCCCC
Q 024481 229 ECVAIPWQNGDVLLIDNLAVLHARRSSS 256 (267)
Q Consensus 229 ~~~~~~Wq~GDvli~DN~rvlHgR~~f~ 256 (267)
.-+.+..++||||+.+=.+.+||-++.+
T Consensus 126 ~g~~~~~~~GtVl~~~~~~~~Hgvtpv~ 153 (171)
T PF12851_consen 126 LGVAFAYQPGTVLIFCAKRELHGVTPVE 153 (171)
T ss_pred CCEEEecCCCcEEEEcccceeeecCccc
Confidence 5688999999999999999999999987
No 15
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.81 E-value=6.5 Score=33.13 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.2
Q ss_pred EEEeeccCCCEEEEeCcccccccCCCC
Q 024481 230 CVAIPWQNGDVLLIDNLAVLHARRSSS 256 (267)
Q Consensus 230 ~~~~~Wq~GDvli~DN~rvlHgR~~f~ 256 (267)
.+.--+.|||++++|.++++|+.+|+.
T Consensus 174 ~f~kvl~pGe~~~l~Dh~~~H~~tpi~ 200 (226)
T COG4340 174 GFFKVLAPGEAVFLDDHRVLHGVTPIV 200 (226)
T ss_pred ceEEeccCCcEEEeccchhccccccee
Confidence 344567899999999999999999983
No 16
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=55.08 E-value=7.2 Score=36.05 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=18.1
Q ss_pred ccCCCEEEEeCcccccccCCC
Q 024481 235 WQNGDVLLIDNLAVLHARRSS 255 (267)
Q Consensus 235 Wq~GDvli~DN~rvlHgR~~f 255 (267)
+++||+||++|-+|+-+|--.
T Consensus 49 l~~gDlLV~NdTkVipARL~g 69 (344)
T TIGR00113 49 FNEGDLLVLNNTKVIPARLFG 69 (344)
T ss_pred cCCCCEEEEeCcEEeeeeEEE
Confidence 579999999999999888643
No 17
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=54.84 E-value=15 Score=29.93 Aligned_cols=33 Identities=36% Similarity=0.726 Sum_probs=23.4
Q ss_pred hccEEEeeccCCCEEEEeCcccccccCCC-CC-cce
Q 024481 227 EEECVAIPWQNGDVLLIDNLAVLHARRSS-SR-PRH 260 (267)
Q Consensus 227 ~~~~~~~~Wq~GDvli~DN~rvlHgR~~f-~g-~R~ 260 (267)
....+.+..++||++|||. +++||..+= +. .|+
T Consensus 176 ~~~~~~~~~~~Gdvl~~~~-~~~H~s~~N~s~~~R~ 210 (211)
T PF05721_consen 176 EDEWVPVPMKAGDVLFFHS-RLIHGSGPNTSDDPRR 210 (211)
T ss_dssp CSGCEEE-BSTTEEEEEET-TSEEEEE-B-SSSTEE
T ss_pred cCceEEeecCCCeEEEEcC-CccccCCCCCCcCcCC
Confidence 4457888999999999986 578998774 33 454
No 18
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=52.75 E-value=7.9 Score=31.76 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=10.8
Q ss_pred eeccCCCEEEEe
Q 024481 233 IPWQNGDVLLID 244 (267)
Q Consensus 233 ~~Wq~GDvli~D 244 (267)
-.||+||||.|+
T Consensus 105 ~~~q~GDIVtw~ 116 (164)
T PF06940_consen 105 EDWQPGDIVTWR 116 (164)
T ss_pred hhcCCCCEEEEe
Confidence 479999999996
No 19
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=50.23 E-value=10 Score=35.12 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=17.8
Q ss_pred ccCCCEEEEeCcccccccCC
Q 024481 235 WQNGDVLLIDNLAVLHARRS 254 (267)
Q Consensus 235 Wq~GDvli~DN~rvlHgR~~ 254 (267)
+++||+||++|-+|+-+|--
T Consensus 50 l~~gDlLV~NdTkVipARL~ 69 (342)
T PRK00147 50 LNPGDLLVFNDTRVIPARLF 69 (342)
T ss_pred cCCCCEEEEEcCeeeeeeEE
Confidence 58999999999999988864
No 20
>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=49.56 E-value=10 Score=35.22 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.7
Q ss_pred ccCCCEEEEeCcccccccCCC
Q 024481 235 WQNGDVLLIDNLAVLHARRSS 255 (267)
Q Consensus 235 Wq~GDvli~DN~rvlHgR~~f 255 (267)
+++||+||++|-+|+-+|--.
T Consensus 47 L~~GDlLV~NdTkVipARL~g 67 (366)
T PRK01424 47 LKEGDLLVFNNSKVIKAKLNL 67 (366)
T ss_pred cCCCCEEEEeccEEeeeEEEc
Confidence 589999999999999999754
No 21
>PF02547 Queuosine_synth: Queuosine biosynthesis protein; InterPro: IPR003699 This entry represents the queuosine biosynthesis proteins QueA. Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes []. Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (QueA) catalyses the formation of the 2,3-epoxy-4,5-dihydroxycyclopentane ring of the Q precursor epoxyqueuosine (oQ). S-adenosyl-L-methionine (AdoMet) reacts with 7-aminomethyl-7-deazaguanine of tRNA at position 34 to yield adenine, methionine, and a modified tRNA with oQ at position 34. QueA consists of two domains: domain 1 has 3 layers alpha/beta/alpha, while domain 2 is a closed beta-barrel with Greek-key topology [].; GO: 0016740 transferase activity, 0016853 isomerase activity, 0008616 queuosine biosynthetic process; PDB: 1WDI_A 1VKY_B 1YY3_A.
Probab=48.98 E-value=7.8 Score=35.81 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=16.2
Q ss_pred ccCCCEEEEeCcccccccCCC
Q 024481 235 WQNGDVLLIDNLAVLHARRSS 255 (267)
Q Consensus 235 Wq~GDvli~DN~rvlHgR~~f 255 (267)
+++||+||++|-+|+.+|.-.
T Consensus 49 L~~GDlLV~NdTkVipARL~g 69 (341)
T PF02547_consen 49 LRPGDLLVFNDTKVIPARLFG 69 (341)
T ss_dssp --TTEEEEEEEEEE-SEEEEE
T ss_pred hCCCCEEEEeCCEEEeeEEEE
Confidence 469999999999999988654
No 22
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=48.48 E-value=12 Score=27.66 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=29.0
Q ss_pred CCCcceeHHHHHHHhhhhChHHHHHHHhCCeE
Q 024481 82 GDTPLVLSHIVYERMKESYPEFVQQLEQDGLI 113 (267)
Q Consensus 82 GeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~ 113 (267)
|--+|-|.-++|++|.+|..|.++.|+++|+.
T Consensus 59 ~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 59 GVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 78889999999999999989999999998874
No 23
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=46.41 E-value=12 Score=34.34 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=16.2
Q ss_pred ccCCCEEEEeCcccccccC
Q 024481 235 WQNGDVLLIDNLAVLHARR 253 (267)
Q Consensus 235 Wq~GDvli~DN~rvlHgR~ 253 (267)
+++||+++++|.+|+=+|.
T Consensus 50 l~~GD~LVfNdTrVIpARl 68 (348)
T COG0809 50 LNPGDLLVFNDTRVIPARL 68 (348)
T ss_pred cCCCCEEEEecCeeechhe
Confidence 5899999999999976653
No 24
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.12 E-value=17 Score=32.74 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=24.8
Q ss_pred hccEEEeeccCCCEEEEeCcccccccCCC-CCcce
Q 024481 227 EEECVAIPWQNGDVLLIDNLAVLHARRSS-SRPRH 260 (267)
Q Consensus 227 ~~~~~~~~Wq~GDvli~DN~rvlHgR~~f-~g~R~ 260 (267)
++....+.+++||+|+|| -++.||..+= ++.+|
T Consensus 189 ~~~~~pv~lekGDallF~-~~L~HaA~aNrT~~~R 222 (299)
T COG5285 189 ERNAVPVELEKGDALLFN-GSLWHAAGANRTSADR 222 (299)
T ss_pred hhcceeeeecCCCEEEEc-chhhhhhhcCCCCccc
Confidence 345788999999999995 6788987654 55444
No 25
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=44.44 E-value=18 Score=29.59 Aligned_cols=38 Identities=8% Similarity=-0.116 Sum_probs=27.6
Q ss_pred CccccccccccCC--CCceEEEeeeecCCCCCCCcceeHH
Q 024481 53 KWLWLERYMLLPQ--FPSKLFFFCEVEPVSGGDTPLVLSH 90 (267)
Q Consensus 53 ~~lwHtD~~y~~~--~P~~~~l~c~~~p~~GGeT~~aD~~ 90 (267)
...+|.|...... ...+.++..+..+..||+|.|-+..
T Consensus 95 ~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~ 134 (178)
T smart00702 95 HYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLG 134 (178)
T ss_pred cccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCC
Confidence 4457999875432 3357777777788899999998753
No 26
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=44.16 E-value=14 Score=31.29 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=22.2
Q ss_pred EEeeccCCCEEEEeCcccccccCCC-------CCcceeee
Q 024481 231 VAIPWQNGDVLLIDNLAVLHARRSS-------SRPRHILA 263 (267)
Q Consensus 231 ~~~~Wq~GDvli~DN~rvlHgR~~f-------~g~R~ll~ 263 (267)
...-.++||.+++|-.++.|+-+|- .|.|-+|+
T Consensus 153 ~~~l~~p~d~l~~~D~~~~H~vtpI~~~~~~~~g~RDvlv 192 (195)
T PF10014_consen 153 FFTLLEPGDTLLVDDRRVWHYVTPIRPVDPSRPGYRDVLV 192 (195)
T ss_dssp EE---STTEEEEEETTTEEEEE--EEES-TT---EEEEEE
T ss_pred EEEecCCCCEEEEeCCcceECCCceecCCCCCcEEEEEEE
Confidence 4456689999999999999999986 14676665
No 27
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=40.86 E-value=28 Score=30.94 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=24.5
Q ss_pred EEEeeccCCCEEEEeCcccccccCCC-CC-cceeee
Q 024481 230 CVAIPWQNGDVLLIDNLAVLHARRSS-SR-PRHILA 263 (267)
Q Consensus 230 ~~~~~Wq~GDvli~DN~rvlHgR~~f-~g-~R~ll~ 263 (267)
.+.+..++||++++|- .++||..+= ++ .|+.+.
T Consensus 210 ~v~~~~~aGDvl~f~~-~~~H~S~~N~s~~~R~~l~ 244 (277)
T TIGR02408 210 ISTFTGKAGSAVWFDC-NTMHGSGSNITPWPRSNVF 244 (277)
T ss_pred ceeeccCCceEEEEcc-ccccCCCCCCCCCcceeEE
Confidence 4677789999999986 578998774 33 666543
No 28
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=39.16 E-value=27 Score=30.31 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=27.7
Q ss_pred EEeeccCCCEEEEeCcccccccCCC-CCcceeeecc
Q 024481 231 VAIPWQNGDVLLIDNLAVLHARRSS-SRPRHILASL 265 (267)
Q Consensus 231 ~~~~Wq~GDvli~DN~rvlHgR~~f-~g~R~ll~~~ 265 (267)
..++.++||+|++.+. .+|...|- .|.|..++.+
T Consensus 141 ~~Vkp~aG~~vlfps~-~lH~v~pVt~G~R~~~~~W 175 (226)
T PRK05467 141 HRVKLPAGDLVLYPST-SLHRVTPVTRGVRVASFFW 175 (226)
T ss_pred EEEecCCCeEEEECCC-CceeeeeccCccEEEEEec
Confidence 5678899999999985 78999996 5777777654
No 29
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=38.07 E-value=27 Score=28.51 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEeeccCCCEEEEeCcccccccCCC-CCcceeee
Q 024481 231 VAIPWQNGDVLLIDNLAVLHARRSS-SRPRHILA 263 (267)
Q Consensus 231 ~~~~Wq~GDvli~DN~rvlHgR~~f-~g~R~ll~ 263 (267)
-.+.|++|+++++|+. ..|...-. +.+|-+|.
T Consensus 124 ~~~~w~~G~~~~fD~s-~~H~~~N~~~~~Rv~L~ 156 (163)
T PF05118_consen 124 ETRHWREGECWVFDDS-FEHEVWNNGDEDRVVLI 156 (163)
T ss_dssp EEEB--CTEEEEE-TT-S-EEEEESSSS-EEEEE
T ss_pred eEEEeccCcEEEEeCC-EEEEEEeCCCCCEEEEE
Confidence 4689999999999998 66765443 45777665
No 30
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=36.63 E-value=39 Score=24.95 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=21.9
Q ss_pred ccEEEeeccCCCEEEEeCcccccccCCCCC-cceeeecc
Q 024481 228 EECVAIPWQNGDVLLIDNLAVLHARRSSSR-PRHILASL 265 (267)
Q Consensus 228 ~~~~~~~Wq~GDvli~DN~rvlHgR~~f~g-~R~ll~~~ 265 (267)
...+.++=++|||||+-. .+.|+-.++.+ ..|+-+|+
T Consensus 63 ~~~~~~~p~~G~lvlFPs-~l~H~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 63 SPYYIVEPEEGDLVLFPS-WLWHGVPPNNSDEERISISF 100 (101)
T ss_dssp -SEEEE---TTEEEEEET-TSEEEE----SSS-EEEEEE
T ss_pred CceEEeCCCCCEEEEeCC-CCEEeccCcCCCCCEEEEEc
Confidence 457888999999999995 57899999966 46666553
No 31
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.01 E-value=32 Score=25.16 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=28.0
Q ss_pred CCCcceeHHHHHHHhhhhChHHHHHHHhCCeE
Q 024481 82 GDTPLVLSHIVYERMKESYPEFVQQLEQDGLI 113 (267)
Q Consensus 82 GeT~~aD~~~~y~~L~~~~Pel~~~L~~~~v~ 113 (267)
|--+|-|...++-+|..+..|.++.|+++|++
T Consensus 63 ~VATfnDc~eA~veL~~~IkEAr~~L~rkg~r 94 (95)
T KOG4841|consen 63 RVATFNDCEEAAVELQSQIKEARADLARKGLR 94 (95)
T ss_pred eeeccCCcHHHHHHHHHHHHHHHHHHHHccCC
Confidence 67789999999999998888888899988864
No 32
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=32.96 E-value=45 Score=28.98 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=25.3
Q ss_pred CccccccccccCCC-------CceEEEeeeecCC--CCCCCcceeH
Q 024481 53 KWLWLERYMLLPQF-------PSKLFFFCEVEPV--SGGDTPLVLS 89 (267)
Q Consensus 53 ~~lwHtD~~y~~~~-------P~~~~l~c~~~p~--~GGeT~~aD~ 89 (267)
.+-+|.|.++...+ -.+.++..+..|. +||||.|-|.
T Consensus 92 ~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~ 137 (226)
T PRK05467 92 SYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDT 137 (226)
T ss_pred ccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecC
Confidence 44579999977533 1455666666665 7999998764
No 33
>PF07892 DUF1667: Protein of unknown function (DUF1667); InterPro: IPR012460 Hypothetical archaeal and bacterial proteins make up this family. A few proteins are annotated as being potential metal-binding proteins, and in fact the members of this family have four highly conserved cysteine residues, but no further literature evidence was found in this regard. ; PDB: 2JOV_A.
Probab=31.87 E-value=50 Score=24.02 Aligned_cols=32 Identities=25% Similarity=0.571 Sum_probs=21.3
Q ss_pred CCcHHHHHHHHHHhhccEEEeeccCCCEEEEe
Q 024481 213 PYPEDIVYNLMKILEEECVAIPWQNGDVLLID 244 (267)
Q Consensus 213 ~~~~~~l~~l~~~~~~~~~~~~Wq~GDvli~D 244 (267)
++|.+.+..+.+.+.+..+.-+.+.||+++=|
T Consensus 39 pIPk~~i~e~m~~i~~i~v~aPV~~GdVi~~n 70 (82)
T PF07892_consen 39 PIPKEKIFEVMEEIKKIEVKAPVKIGDVIVKN 70 (82)
T ss_dssp EE-HHHHHHHHHHHTT-EE-----SSEEEEES
T ss_pred CCCHHHHHHHHHHHhCCEEcCCccCCCEEEec
Confidence 78888888888888899999999999998754
No 34
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=31.30 E-value=30 Score=33.01 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=29.8
Q ss_pred CCCceEEEeeeecCCCCCCCcceeHHHHHHHhhhhChHHHHH
Q 024481 65 QFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQ 106 (267)
Q Consensus 65 ~~P~~~~l~c~~~p~~GGeT~~aD~~~~y~~L~~~~Pel~~~ 106 (267)
..|..+||+|.+||.. .-+-|-..+.+.|..++|.++=+
T Consensus 452 e~pd~vffc~iepps~---~k~~d~ehale~lqredpslkir 490 (753)
T KOG0464|consen 452 EIPDAVFFCCIEPPSL---RKLNDFEHALECLQREDPSLKIR 490 (753)
T ss_pred cCCCceEEEeccCccc---ccchhHHHHHHHHhccCCceeEE
Confidence 4789999999999954 45667788888888877766533
No 35
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=28.39 E-value=33 Score=25.34 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=11.5
Q ss_pred EEeeccCCCEEEEeC
Q 024481 231 VAIPWQNGDVLLIDN 245 (267)
Q Consensus 231 ~~~~Wq~GDvli~DN 245 (267)
-.=..+||||+++.+
T Consensus 48 ~~~~~~pGDlif~~~ 62 (105)
T PF00877_consen 48 PISELQPGDLIFFKG 62 (105)
T ss_dssp EGGG-TTTEEEEEEG
T ss_pred chhcCCcccEEEEeC
Confidence 344779999999998
No 36
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=27.82 E-value=58 Score=29.73 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=28.5
Q ss_pred cEEEeeccCCCEEEEeCc--------ccccccCCC-CCcceeee
Q 024481 229 ECVAIPWQNGDVLLIDNL--------AVLHARRSS-SRPRHILA 263 (267)
Q Consensus 229 ~~~~~~Wq~GDvli~DN~--------rvlHgR~~f-~g~R~ll~ 263 (267)
.-+.++=++|+.|+|-|. +.+|+..|. .|.+.++.
T Consensus 204 ~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~at 247 (310)
T PLN00052 204 KGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAP 247 (310)
T ss_pred CCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEE
Confidence 457888899999999996 699999996 67665554
No 37
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=26.17 E-value=84 Score=20.93 Aligned_cols=20 Identities=20% Similarity=0.559 Sum_probs=16.6
Q ss_pred HHHHHHHhhhhChHHHHHHH
Q 024481 89 SHIVYERMKESYPEFVQQLE 108 (267)
Q Consensus 89 ~~~~y~~L~~~~Pel~~~L~ 108 (267)
+..||+.|.+++||+++...
T Consensus 33 T~~VW~~Le~eN~eFF~aY~ 52 (54)
T PF09713_consen 33 TSTVWQKLEKENPEFFKAYY 52 (54)
T ss_pred HHHHHHHHHHHCHHHHHHhh
Confidence 35699999999999998754
No 38
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=25.99 E-value=47 Score=26.07 Aligned_cols=11 Identities=45% Similarity=0.597 Sum_probs=9.9
Q ss_pred eccCCCEEEEe
Q 024481 234 PWQNGDVLLID 244 (267)
Q Consensus 234 ~Wq~GDvli~D 244 (267)
..||||||+|.
T Consensus 76 ~~qpGDlvff~ 86 (134)
T TIGR02219 76 AAQPGDVLVFR 86 (134)
T ss_pred cCCCCCEEEEe
Confidence 57999999996
No 39
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=25.23 E-value=51 Score=28.86 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=24.2
Q ss_pred EEEeeccCCCEEEEeCcccccccCCCCCcce
Q 024481 230 CVAIPWQNGDVLLIDNLAVLHARRSSSRPRH 260 (267)
Q Consensus 230 ~~~~~Wq~GDvli~DN~rvlHgR~~f~g~R~ 260 (267)
.+.-.+++||+|+.|.+--+=++.|..|+|.
T Consensus 94 sl~~~~~pGdlv~~~D~I~~t~~~pl~g~~~ 124 (237)
T TIGR01698 94 GLRQDWGPGTPVLISDHINLTARSPLIGPRF 124 (237)
T ss_pred cCCCCCCCCCEEeechhcccCCCCCCCCCcc
Confidence 4566799999999999887777777666554
No 40
>PHA02813 hypothetical protein; Provisional
Probab=24.84 E-value=61 Score=30.04 Aligned_cols=37 Identities=8% Similarity=0.099 Sum_probs=26.8
Q ss_pred CccccccccccCC--CCceEEEeeeecCCCCCCCcceeH
Q 024481 53 KWLWLERYMLLPQ--FPSKLFFFCEVEPVSGGDTPLVLS 89 (267)
Q Consensus 53 ~~lwHtD~~y~~~--~P~~~~l~c~~~p~~GGeT~~aD~ 89 (267)
.+-||.|..|... --.+.+|.-+..+.+||+|.|...
T Consensus 106 ~F~~H~Dg~~~r~k~~s~~tLLLYLN~~~~GGeT~f~~~ 144 (354)
T PHA02813 106 FFNNHRDFIHFKSKNCYCYHLVLYLNNTSKGGNTNIHIK 144 (354)
T ss_pred ccCcccCCceeecCCceEEEEEEEEeccCCCCceEEEcC
Confidence 3468999987542 344455666788899999999976
No 41
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=22.48 E-value=93 Score=27.89 Aligned_cols=32 Identities=13% Similarity=0.284 Sum_probs=24.4
Q ss_pred EEEeeccCCCEEEEeCcccccccCCC-CC-cceee
Q 024481 230 CVAIPWQNGDVLLIDNLAVLHARRSS-SR-PRHIL 262 (267)
Q Consensus 230 ~~~~~Wq~GDvli~DN~rvlHgR~~f-~g-~R~ll 262 (267)
.+.+.+++||+++++- .++||..+= +. .||+.
T Consensus 208 ~v~~~lkaGd~~~f~~-~t~HgS~~N~S~~~~R~~ 241 (288)
T TIGR01762 208 AVPMQMKAGQFIIFWS-TLMHASYPNSGESQMRMG 241 (288)
T ss_pred eeeeeeCCceEEEECC-CceecCCCCCCCCceEEE
Confidence 5788999999999975 689998875 43 44544
No 42
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=21.90 E-value=53 Score=27.75 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=10.1
Q ss_pred eeccCCCEEEEe
Q 024481 233 IPWQNGDVLLID 244 (267)
Q Consensus 233 ~~Wq~GDvli~D 244 (267)
-..+|||+|+|+
T Consensus 127 ~~lqpGDLVfF~ 138 (190)
T PRK10838 127 SKLRTGDLVLFR 138 (190)
T ss_pred CCCCCCcEEEEC
Confidence 357999999986
No 43
>PF07625 DUF1586: Protein of unknown function (DUF1586); InterPro: IPR011479 This is a family of short hypothetical proteins found in Rhodopirellula baltica.
Probab=21.66 E-value=37 Score=18.09 Aligned_cols=13 Identities=38% Similarity=0.381 Sum_probs=11.0
Q ss_pred eEEeecCCCCCCc
Q 024481 13 RLLATRSCPTSAV 25 (267)
Q Consensus 13 ~~~~~~~~~~~~~ 25 (267)
+|||+...||.+.
T Consensus 4 AlAaV~q~pT~an 16 (22)
T PF07625_consen 4 ALAAVSQTPTGAN 16 (22)
T ss_pred hhhhhccCCCCcC
Confidence 6889999998875
No 44
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=21.58 E-value=37 Score=14.64 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=5.0
Q ss_pred EEeeccCC
Q 024481 231 VAIPWQNG 238 (267)
Q Consensus 231 ~~~~Wq~G 238 (267)
+++.|.||
T Consensus 3 wS~~w~PG 10 (10)
T PF00446_consen 3 WSHGWKPG 10 (10)
T ss_pred cccccCCC
Confidence 45667766
No 45
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=20.18 E-value=27 Score=24.81 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=24.5
Q ss_pred EEeeeecCCCCCCCcceeHHHHHHHhhhhChH
Q 024481 71 FFFCEVEPVSGGDTPLVLSHIVYERMKESYPE 102 (267)
Q Consensus 71 ~l~c~~~p~~GGeT~~aD~~~~y~~L~~~~Pe 102 (267)
|+.|-..|..|=+-.+-++..|++.|.+..|.
T Consensus 10 F~~~FR~a~~~Ee~e~lsa~~If~~L~k~~~~ 41 (73)
T PF12990_consen 10 FHCCFRPAEEGEEGEWLSAAEIFERLQKKSPA 41 (73)
T ss_pred HHHHccCCCCCccceeecHHHHHHHHHHhCcc
Confidence 44467888887777788999999999866554
Done!