BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024482
(267 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/217 (93%), Positives = 210/217 (96%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDRSEIP YLTGEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWAML
Sbjct: 74 GPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAML 133
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL+FAV+AE+VLVG
Sbjct: 134 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLIFAVVAEVVLVG 193
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGFF+QA
Sbjct: 194 GAEYYRIINGLDLEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFFIQA 253
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLA HLSDPF NNLLTVI+G AERAPTL
Sbjct: 254 YVTGEGPVENLAAHLSDPFGNNLLTVIAGTAERAPTL 290
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/217 (92%), Positives = 210/217 (96%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWAML
Sbjct: 71 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAML 130
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AV+AEIVLVG
Sbjct: 131 GAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLILAVVAEIVLVG 190
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAMLGF+ QA
Sbjct: 191 GAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQA 250
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLAKHLSDPF NNLLTVI+G+AERAPTL
Sbjct: 251 YVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 287
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/217 (92%), Positives = 210/217 (96%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF KYQA+ELIHARWAML
Sbjct: 74 GPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAML 133
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE++LVG
Sbjct: 134 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVILVG 193
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEY+RITNGL +DKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAMLGFF QA
Sbjct: 194 GAEYFRITNGLGFDDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFFQA 253
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLAKHLSDPF NNLLTVI+G+AERAP+L
Sbjct: 254 YVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPSL 290
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/217 (91%), Positives = 210/217 (96%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWAML
Sbjct: 76 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAML 135
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFI+PEAFNKFGANCGPEAVWFKTGALLLDG TLNYFG +IPINLV AVIAE+VL+G
Sbjct: 136 GAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNSIPINLVVAVIAEVVLLG 195
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIKNGRLAMFAMLGF+ QA
Sbjct: 196 GAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFYFQA 255
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLAKHLSDPF NNLLTV++G+AERAPTL
Sbjct: 256 YVTGEGPVENLAKHLSDPFGNNLLTVLAGSAERAPTL 292
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/217 (92%), Positives = 209/217 (96%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWAML
Sbjct: 71 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAML 130
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPIN + AV+AEIVLVG
Sbjct: 131 GAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINFILAVVAEIVLVG 190
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAMLGF+ QA
Sbjct: 191 GAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQA 250
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLAKHLSDPF NNLLTVI+G+AERAPTL
Sbjct: 251 YVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 287
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/217 (92%), Positives = 209/217 (96%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWAML
Sbjct: 72 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAML 131
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AV+AEIVLVG
Sbjct: 132 GAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVVAEIVLVG 191
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAMLGF+ QA
Sbjct: 192 GAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQA 251
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLAKHLSDPF NNLLTVI+G+ ERAPTL
Sbjct: 252 YVTGEGPVENLAKHLSDPFGNNLLTVIAGSVERAPTL 288
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/217 (91%), Positives = 207/217 (95%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWAML
Sbjct: 72 GPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWAML 131
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG NIPINL+ AVIAE+VLVG
Sbjct: 132 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVG 191
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGL+ EDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLAMFAMLGF+ QA
Sbjct: 192 GAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQA 251
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLAKHLSDPF NNLLTVISGNAER PTL
Sbjct: 252 YVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 288
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/217 (92%), Positives = 208/217 (95%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DFSKYQA+ELIHARWAML
Sbjct: 73 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAML 132
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIVLVG
Sbjct: 133 GAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVG 192
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGL+ EDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGF+ QA
Sbjct: 193 GAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQA 252
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLAKHLSDPF NNLLTVISG+AERAPTL
Sbjct: 253 YVTGEGPVENLAKHLSDPFGNNLLTVISGSAERAPTL 289
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/239 (84%), Positives = 214/239 (89%), Gaps = 2/239 (0%)
Query: 29 KPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 88
KP + S SP S L K GPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL
Sbjct: 47 KPAAVSSSSPDISDELAKWY--GPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLG 104
Query: 89 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 148
KKP+DF+KYQAYELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTLN
Sbjct: 105 KKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLN 164
Query: 149 YFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALL 208
YFG +IPINLV AVIAE+VLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLA DPDQ A+L
Sbjct: 165 YFGNSIPINLVVAVIAEVVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLASDPDQAAIL 224
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
KVKEIKNGRLAMF+M FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 225 KVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/217 (91%), Positives = 206/217 (94%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLD+SEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWAML
Sbjct: 71 GPDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAML 130
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL YFGKNIPINLV AVIAE+VLVG
Sbjct: 131 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLYYFGKNIPINLVLAVIAEVVLVG 190
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIKNGRLAMF+MLGFF+QA
Sbjct: 191 GAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSMLGFFIQA 250
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTG+GPVENLA HLSDPF NNLLTVI G ER PTL
Sbjct: 251 YVTGQGPVENLAAHLSDPFGNNLLTVIGGATERVPTL 287
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/239 (83%), Positives = 214/239 (89%), Gaps = 2/239 (0%)
Query: 29 KPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 88
KP + S SP S L K GPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL
Sbjct: 47 KPAAVSSSSPDISDELAKWY--GPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLG 104
Query: 89 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 148
KKP+DF+KYQAYELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTLN
Sbjct: 105 KKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLN 164
Query: 149 YFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALL 208
YFG +IPINLV AVIAE++LVGGAEYYRITNGLDLEDKLHPGGPFDPLGLA DPDQ A+L
Sbjct: 165 YFGNSIPINLVVAVIAEVILVGGAEYYRITNGLDLEDKLHPGGPFDPLGLASDPDQAAIL 224
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
KVKEIKNGRLAMF+M FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 225 KVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/242 (82%), Positives = 215/242 (88%)
Query: 26 PRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 85
P +KP +P S SP + GPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPF
Sbjct: 41 PAQKPKPVPVSSSSPDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPF 100
Query: 86 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 145
GL KKP+DF+KYQAYELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGN
Sbjct: 101 GLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGN 160
Query: 146 TLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQF 205
TLNYFG +IPINLV AVIAE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ
Sbjct: 161 TLNYFGNSIPINLVVAVIAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQA 220
Query: 206 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAP 265
A+LKVKEIKNGRLAMF+ML FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P
Sbjct: 221 AILKVKEIKNGRLAMFSMLAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTP 280
Query: 266 TL 267
+L
Sbjct: 281 SL 282
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/217 (90%), Positives = 206/217 (94%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLP+GLLDRSE+P YL GEVPGDYGYDPFGL KKP+DF+KYQAYELIHARWAML
Sbjct: 63 GPDRRIFLPDGLLDRSEVPAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAML 122
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AVIAE+VL+G
Sbjct: 123 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVIAEVVLLG 182
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ A+LK KEIKNGRLAMFAMLGFFLQA
Sbjct: 183 GAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKAKEIKNGRLAMFAMLGFFLQA 242
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENL+KHLSDPF NNLLTVIS +AER PTL
Sbjct: 243 YVTGEGPVENLSKHLSDPFGNNLLTVISSSAERVPTL 279
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/217 (91%), Positives = 208/217 (95%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWAML
Sbjct: 75 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAML 134
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIVLVG
Sbjct: 135 GAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVG 194
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGL+ EDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGF+ QA
Sbjct: 195 GAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQA 254
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLAKHLSDPF NNLLTVI+G+AERAPTL
Sbjct: 255 YVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 291
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/217 (92%), Positives = 207/217 (95%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP GLSKKP+DFSKYQA+ELIHARWAML
Sbjct: 73 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWAML 132
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIVLVG
Sbjct: 133 GAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVG 192
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGL+ EDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGF+ QA
Sbjct: 193 GAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQA 252
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLAKHLSDPF NNLLTVISG+AERAPTL
Sbjct: 253 YVTGEGPVENLAKHLSDPFGNNLLTVISGSAERAPTL 289
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/239 (83%), Positives = 213/239 (89%), Gaps = 2/239 (0%)
Query: 29 KPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 88
KP + S SP S L K GPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL
Sbjct: 47 KPSAVSSSSPDISDELAKWY--GPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLG 104
Query: 89 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 148
KKP+DF+KYQAYELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTL+
Sbjct: 105 KKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLS 164
Query: 149 YFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALL 208
YFG +IPINLV AVIAE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ A+L
Sbjct: 165 YFGNSIPINLVVAVIAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAIL 224
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
KVKEIKNGRLAMF+M FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 225 KVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/217 (88%), Positives = 205/217 (94%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGLSKKP++F KYQAYELIHARWAML
Sbjct: 87 GPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAML 146
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPINL+ AV+AE++LVG
Sbjct: 147 GAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVG 206
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGFF+QA
Sbjct: 207 GAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQA 266
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLA HLSDPF NNLLTV+ G+ ERAPTL
Sbjct: 267 YVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERAPTL 303
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/217 (88%), Positives = 205/217 (94%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGLSKKP++F KYQAYELIHARWAML
Sbjct: 62 GPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAML 121
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPINL+ AV+AE++LVG
Sbjct: 122 GAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVG 181
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGFF+QA
Sbjct: 182 GAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQA 241
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLA HLSDPF NNLLTV+ G+ ERAPTL
Sbjct: 242 YVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERAPTL 278
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/217 (87%), Positives = 205/217 (94%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGLSKKP++F KYQAYELIHARWAML
Sbjct: 87 GPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAML 146
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFI+PEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPINL+ AV+AE++LVG
Sbjct: 147 GAAGFIMPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVG 206
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGFF+QA
Sbjct: 207 GAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQA 266
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLA HLSDPF NNLLTV+ G+ ERAPTL
Sbjct: 267 YVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERAPTL 303
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/217 (87%), Positives = 204/217 (94%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGLSKKP++F KYQAYELIHARWAML
Sbjct: 87 GPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAML 146
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +I INL+ AV+AE++LVG
Sbjct: 147 GAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIHINLIAAVVAEVILVG 206
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGFF+QA
Sbjct: 207 GAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQA 266
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLA HLSDPF NNLLTV+ G+ ERAPTL
Sbjct: 267 YVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERAPTL 303
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/217 (87%), Positives = 204/217 (94%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGL KKP++F KYQAYELIHARWAML
Sbjct: 87 GPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHARWAML 146
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPINL+ AV+AE++LVG
Sbjct: 147 GAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVG 206
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYR TNGLD EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGFF+QA
Sbjct: 207 GAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQA 266
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLA HLSDPF NNLLTV+ G+ ERAPTL
Sbjct: 267 YVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERAPTL 303
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/221 (90%), Positives = 210/221 (95%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
SSPSGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIHAR
Sbjct: 2 SSPSGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHAR 61
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV AE+
Sbjct: 62 WAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEV 121
Query: 167 VLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 226
VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGF
Sbjct: 122 VLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGF 181
Query: 227 FLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
F+QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 182 FIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 222
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/217 (86%), Positives = 203/217 (93%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAML
Sbjct: 67 GPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAML 126
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAG IIPEA NK+GANCGPEAVWFKTGALLLDGNTL+YFGKNIPINLV AV+ E+VL+G
Sbjct: 127 GAAGCIIPEALNKYGANCGPEAVWFKTGALLLDGNTLSYFGKNIPINLVLAVVGEVVLLG 186
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRITNGLD EDKLHPGGPFDPL LAKDP+Q ALLKVKEIKNGRLAMF+M FF+QA
Sbjct: 187 GAEYYRITNGLDFEDKLHPGGPFDPLDLAKDPEQGALLKVKEIKNGRLAMFSMFAFFIQA 246
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENL+KHLSDPF NNLLTVI+G AERAPTL
Sbjct: 247 YVTGEGPVENLSKHLSDPFGNNLLTVIAGTAERAPTL 283
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/217 (91%), Positives = 211/217 (97%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWAML
Sbjct: 69 GPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAML 128
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGF+IPEAFNKFGA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+G
Sbjct: 129 GAAGFVIPEAFNKFGADCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVVLLG 188
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIKNGRLAMFAMLGFF+QA
Sbjct: 189 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFIQA 248
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTG+GPVENLA HLSDPF NNLLTVI+G AERAPTL
Sbjct: 249 YVTGKGPVENLAAHLSDPFGNNLLTVIAGTAERAPTL 285
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/233 (86%), Positives = 211/233 (90%), Gaps = 9/233 (3%)
Query: 44 LTKSSPS---------GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 94
+T SSP GPDRRIFLPEGLLDRSE+PEYL GEVPGDYGYDPFGLSKKP+DF
Sbjct: 51 VTSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPEDF 110
Query: 95 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 154
SKYQAYELIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +I
Sbjct: 111 SKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSI 170
Query: 155 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
PINL+ AV AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIK
Sbjct: 171 PINLIVAVAAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIK 230
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
NGRLAMF+MLGFF+QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 231 NGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/233 (85%), Positives = 211/233 (90%), Gaps = 9/233 (3%)
Query: 44 LTKSSPS---------GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 94
+T SSP GPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DF
Sbjct: 51 VTSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDF 110
Query: 95 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 154
SKYQAYELIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +I
Sbjct: 111 SKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSI 170
Query: 155 PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
PINL+ AV AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIK
Sbjct: 171 PINLIVAVAAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIK 230
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
NGRLAMF+MLGFF+QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 231 NGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/217 (90%), Positives = 208/217 (95%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDRSEIPEYL GEVPG+YGYDPFGLSKKP+DF+KYQAYELIHARWAML
Sbjct: 70 GPDRRIFLPEGLLDRSEIPEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHARWAML 129
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL+ AV+AE+VLVG
Sbjct: 130 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLILAVVAEVVLVG 189
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIKNGRLAMF+MLGFF+QA
Sbjct: 190 GAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSMLGFFIQA 249
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTG+GPVENLA HLSDPF NNLLTVI G +ER PTL
Sbjct: 250 YVTGQGPVENLAAHLSDPFGNNLLTVIGGASERVPTL 286
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/217 (90%), Positives = 208/217 (95%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAML
Sbjct: 64 GPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAML 123
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+G
Sbjct: 124 GAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLG 183
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLGFF+QA
Sbjct: 184 GAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQA 243
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 244 YVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/217 (90%), Positives = 208/217 (95%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAML
Sbjct: 64 GPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAML 123
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+G
Sbjct: 124 GAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLG 183
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLGFF+QA
Sbjct: 184 GAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQA 243
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 244 YVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/217 (89%), Positives = 208/217 (95%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAML
Sbjct: 64 GPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAML 123
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+G
Sbjct: 124 GAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLG 183
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
G+EYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLGFF+QA
Sbjct: 184 GSEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQA 243
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 244 YVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/217 (89%), Positives = 206/217 (94%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLP+GLLDRSE+PEYL GEVPGDYGYDPFGLSKKPDDF+KYQAYELIHARWAML
Sbjct: 70 GPDRRIFLPDGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHARWAML 129
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV+AE+VLVG
Sbjct: 130 GAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLILAVVAEVVLVG 189
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QA
Sbjct: 190 GAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQA 249
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENL+ HLSDPF NNLLTVISG AER P+L
Sbjct: 250 YVTGEGPVENLSAHLSDPFGNNLLTVISGAAERTPSL 286
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/217 (88%), Positives = 204/217 (94%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDRSE+PEYL GEVPGDYGYDPFGLSK PD+F++YQAYELIHARWAML
Sbjct: 67 GPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAML 126
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEA NKFGANCGPEAVWFKTGALLL+GNTLNYFG +IPINL AV+AE+VLVG
Sbjct: 127 GAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIPINLAVAVVAEVVLVG 186
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QA
Sbjct: 187 GAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQA 246
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLAKHLSDPF NNLLTVIS AER P+L
Sbjct: 247 YVTGEGPVENLAKHLSDPFGNNLLTVISAGAERTPSL 283
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/217 (86%), Positives = 203/217 (93%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDR +IPEYL GEVPGDYGYDPFGL +KP++F KYQAYELIHARWAML
Sbjct: 86 GPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWAML 145
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPINL+ AV+AE+VLVG
Sbjct: 146 GAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVVLVG 205
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYR TNGL+ +DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGFFLQA
Sbjct: 206 GAEYYRATNGLNFDDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFLQA 265
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLA HLSDPF NN+LTV+ G+ ERAPTL
Sbjct: 266 YVTGEGPVENLAAHLSDPFGNNILTVLGGSLERAPTL 302
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/217 (88%), Positives = 201/217 (92%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFL EGLLDRSE+PEYL GEVPGDYGYDPFGLSK PD+F++YQAYELIHARWAML
Sbjct: 67 GPDRRIFLLEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAML 126
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEA NKFGANCGPEAVWFKTGALLL+GNTLNYFG +IPINL AV+AE+VLVG
Sbjct: 127 GAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIPINLAVAVVAEVVLVG 186
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGLDLE KLHPGGPFDPLGLA DPDQ A LKVKEIKNGRLAMF MLGFF+QA
Sbjct: 187 GAEYYRIINGLDLEGKLHPGGPFDPLGLASDPDQAAPLKVKEIKNGRLAMFPMLGFFIQA 246
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENLAKHLSDPF NNLLTVIS AERAP+L
Sbjct: 247 YVTGEGPVENLAKHLSDPFGNNLLTVISAGAERAPSL 283
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/217 (86%), Positives = 202/217 (93%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRI+LP GLLDRSE+PEYL GEVPGDYGYDPFGL KKP+DF+KYQA+ELIHARWAML
Sbjct: 70 GPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAML 129
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV+AE+VLVG
Sbjct: 130 GAAGFIIPEALNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLILAVVAEVVLVG 189
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRITNGL+ +DKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QA
Sbjct: 190 GAEYYRITNGLEFDDKLHPGGPFDPLGLATDPDQAALLKVKEIKNGRLAMFSMLGFFIQA 249
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGP ENL HLSDPF NNLLTVISG AER P+L
Sbjct: 250 YVTGEGPFENLCAHLSDPFGNNLLTVISGAAERVPSL 286
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/213 (84%), Positives = 193/213 (90%), Gaps = 1/213 (0%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
G RRI+LPEG+LDRS++PEYLTGEVPGDYG+DPFGLSKKP DF KYQAYELIHARWAML
Sbjct: 60 GESRRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWAML 119
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGF+IPEAFNKFGA CGPEAVWFKTGALLLDG TLNYFG NIPINLV AV+AE++LVG
Sbjct: 120 GAAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFGANIPINLVLAVLAEVILVG 179
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYR N L L D+LHPGGPFDPLGLAKDPD FALLKVKEIKNGRLAMFAMLGFF+QA
Sbjct: 180 GAEYYRSINNLGL-DRLHPGGPFDPLGLAKDPDNFALLKVKEIKNGRLAMFAMLGFFIQA 238
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAER 263
Y TGEGPVENL HLSDPF NNLL+VI+G E+
Sbjct: 239 YATGEGPVENLTTHLSDPFGNNLLSVIAGGIEK 271
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/221 (80%), Positives = 197/221 (89%), Gaps = 4/221 (1%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRI+LPEGLL + EIP YLTGEVPGDYGYDPFGLSKKP+DF +YQAYELIHARWAML
Sbjct: 50 GPDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAML 109
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGF++PEAFNKFGA CGPEAVW+KTGALLL+G+++ YFG +PINL AVIAE++LVG
Sbjct: 110 GAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPINLAAAVIAEVILVG 169
Query: 171 GAEYYRITN----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 226
GAEYYR TN GL D+LHPGG FDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGF
Sbjct: 170 GAEYYRSTNKDVYGLQDLDRLHPGGAFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGF 229
Query: 227 FLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
F+QAYVTGEGPVENLA HLSDPF NNLLTVI G AER P+L
Sbjct: 230 FVQAYVTGEGPVENLAAHLSDPFGNNLLTVIQGTAERTPSL 270
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/221 (81%), Positives = 200/221 (90%), Gaps = 5/221 (2%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRI+LPEGLL + EIPEYLTGEVPGDYGYDPFGLSKKP+DF +YQAYELIHARWAML
Sbjct: 8 GPDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAML 67
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGF++PEAFNKFGA CGPEAVW+KTGALLL+G+++ YFG +P+NL AVIAE++LVG
Sbjct: 68 GAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVIAEVILVG 127
Query: 171 GAEYYRITN----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 226
GAEYYR TN G DL D+LHPGG FDPLGLAKDPDQFALLKVKEIKNGRLAMF+MLGF
Sbjct: 128 GAEYYRSTNKSPLGSDL-DRLHPGGAFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGF 186
Query: 227 FLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
F+QAYVTGEGPVENL+ HLSDPF NNLLTVI G AERAP+L
Sbjct: 187 FVQAYVTGEGPVENLSAHLSDPFGNNLLTVIQGTAERAPSL 227
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 363 bits (933), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 173/187 (92%), Positives = 181/187 (96%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF KYQA+ELIHARWAML
Sbjct: 74 GPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAML 133
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE++LVG
Sbjct: 134 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVILVG 193
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEY+RITNGL +DKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAMLGFFLQA
Sbjct: 194 GAEYFRITNGLGFDDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFLQA 253
Query: 231 YVTGEGP 237
YVTG+ P
Sbjct: 254 YVTGDVP 260
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 360 bits (923), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 181/201 (90%), Positives = 190/201 (94%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E+PEYL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIHARWAMLGAAGFIIPEA NKFGA
Sbjct: 1 EVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGA 60
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 186
NCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV AE+VLVGGAEYYRI NGLDLEDK
Sbjct: 61 NCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIINGLDLEDK 120
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 246
LHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QAYVTGEGPVENL+KHLS
Sbjct: 121 LHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLS 180
Query: 247 DPFANNLLTVISGNAERAPTL 267
DPF NNLLTVISG AER P+L
Sbjct: 181 DPFGNNLLTVISGAAERTPSL 201
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 350 bits (898), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 177/227 (77%), Positives = 190/227 (83%), Gaps = 4/227 (1%)
Query: 42 PPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
P SP GPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 38 PTAASGSPWYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 94
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 160
E+IH RWAMLG AGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+
Sbjct: 95 EVIHCRWAMLGVAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIL 154
Query: 161 AVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAM 220
AVIAE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAM
Sbjct: 155 AVIAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAM 214
Query: 221 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
F+MLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVIS AER P+L
Sbjct: 215 FSMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISAGAERTPSL 261
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 158/166 (95%), Positives = 162/166 (97%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWAML
Sbjct: 75 GPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAML 134
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VLVG
Sbjct: 135 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVVLVG 194
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
GAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNG
Sbjct: 195 GAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNG 240
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/171 (90%), Positives = 163/171 (95%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+ E+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVTEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 300 bits (767), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 154/171 (90%), Positives = 162/171 (94%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 162/171 (94%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
RLAMF+M FF++AYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIKAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 162/171 (94%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
RLAMF+M FF+QAYVTG+GPVE+LA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVESLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+EL HARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
RLAMF+M FF+QAYV G+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVAGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 297 bits (761), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 161/171 (94%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+EL HARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
RLAMF+M FF+QAYVTG+GPVENLA H+SDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHMSDPFGNNLLTVISGNIERVPTL 171
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNI I
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIHI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii]
Length = 171
Score = 297 bits (760), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
RLAMF+M FF+QAYVTG+ PVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQCPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 153/171 (89%), Positives = 161/171 (94%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVI GN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVIYGNIERVPTL 171
>gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium sandwicense]
Length = 171
Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 161/171 (94%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKT ALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTRALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
RLAMF+M FF++AYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIKAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifolia]
Length = 171
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 152/171 (88%), Positives = 160/171 (93%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNI I
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIHI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VLVGGAEYYRI NGLDLEDKLH GGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHHGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|154357560|gb|ABS78804.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 289 bits (740), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 139/149 (93%), Positives = 145/149 (97%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AVIAE+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNG
Sbjct: 61 NLVLAVIAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHL 245
RLAMFAMLGFF+QAYVTGEGPVENLAKHL
Sbjct: 121 RLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|223949713|gb|ACN28940.1| unknown [Zea mays]
Length = 159
Score = 286 bits (733), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 139/159 (87%), Positives = 147/159 (92%)
Query: 109 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 168
MLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTL+YFG +IPINLV AVIAE+VL
Sbjct: 1 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIPINLVVAVIAEVVL 60
Query: 169 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
VGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLAMF+M FF+
Sbjct: 61 VGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFFI 120
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 121 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 159
>gi|215740823|dbj|BAG96979.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 159
Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 142/159 (89%), Positives = 149/159 (93%)
Query: 109 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 168
MLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV AE+VL
Sbjct: 1 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVL 60
Query: 169 VGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
VGGAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+
Sbjct: 61 VGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI 120
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 121 QAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 159
>gi|168068370|ref|XP_001786045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662226|gb|EDQ49142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 133/175 (76%), Positives = 151/175 (86%), Gaps = 5/175 (2%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQAYELIHARWA+L AAGF+ P AFNKFG+ CGPEA+W+KTGALLL+G+++ YFG +PI
Sbjct: 34 YQAYELIHARWAILRAAGFVPPNAFNKFGSVCGPEAMWWKTGALLLEGDSIKYFGATVPI 93
Query: 157 NLVFAVIAEIVLVGGAEYYRITN----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 212
NL AVI+E+ LVGG+EYYR TN G DL D+LHPGG FDPLGLAKDPDQFALLKVKE
Sbjct: 94 NLAAAVISEVNLVGGSEYYRSTNKSPLGSDL-DRLHPGGAFDPLGLAKDPDQFALLKVKE 152
Query: 213 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
I NGRLAMF+MLGFF++AYVTGEGPVENLA HLSDPF NNLLTVI G AER P+L
Sbjct: 153 IMNGRLAMFSMLGFFVKAYVTGEGPVENLAAHLSDPFGNNLLTVIQGTAERTPSL 207
>gi|154357502|gb|ABS78775.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357504|gb|ABS78776.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357506|gb|ABS78777.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357508|gb|ABS78778.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357510|gb|ABS78779.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357512|gb|ABS78780.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357514|gb|ABS78781.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357516|gb|ABS78782.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357518|gb|ABS78783.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357520|gb|ABS78784.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357522|gb|ABS78785.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357524|gb|ABS78786.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357526|gb|ABS78787.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357528|gb|ABS78788.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357530|gb|ABS78789.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357532|gb|ABS78790.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357534|gb|ABS78791.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357536|gb|ABS78792.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357538|gb|ABS78793.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357540|gb|ABS78794.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357542|gb|ABS78795.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357544|gb|ABS78796.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357546|gb|ABS78797.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357548|gb|ABS78798.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357550|gb|ABS78799.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357552|gb|ABS78800.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357554|gb|ABS78801.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357556|gb|ABS78802.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357558|gb|ABS78803.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357562|gb|ABS78805.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357566|gb|ABS78807.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357568|gb|ABS78808.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357572|gb|ABS78810.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357574|gb|ABS78811.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 138/149 (92%), Positives = 145/149 (97%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNG
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHL 245
RLAMFAMLGFF+QAYVTGEGPVENLAKHL
Sbjct: 121 RLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|154357564|gb|ABS78806.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 137/149 (91%), Positives = 144/149 (96%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNG
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHL 245
RLAMF MLGFF+QAYVTGEGPVENLAKHL
Sbjct: 121 RLAMFGMLGFFIQAYVTGEGPVENLAKHL 149
>gi|154357570|gb|ABS78809.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 137/149 (91%), Positives = 144/149 (96%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNG
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHL 245
RLAMF MLGFF+QAYVTGEGPVENLAKHL
Sbjct: 121 RLAMFXMLGFFIQAYVTGEGPVENLAKHL 149
>gi|154357500|gb|ABS78774.1| At4g10340-like protein [Arabidopsis halleri subsp. halleri]
Length = 149
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 137/149 (91%), Positives = 143/149 (95%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
YQA+ELIHARWAMLGAAGFIIPEA NK+GA CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGAKCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 157 NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
NLV AV+AE+VL+GGAEYYRITN LD EDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNG
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNELDFEDKLHPGGPFDPLGLAKDPDQGALLKVKEIKNG 120
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHL 245
RLAMFAMLGFF+QAYVTGEGPVENLAKHL
Sbjct: 121 RLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 135/217 (62%), Positives = 145/217 (66%), Gaps = 58/217 (26%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+D
Sbjct: 67 GPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPED----------------- 109
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
F+K+ A A W +VLVG
Sbjct: 110 ----------FSKYQAYELIHARW-------------------------------VVLVG 128
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
GAEYYRI NGLDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QA
Sbjct: 129 GAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQA 188
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
YVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 189 YVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 225
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 135/241 (56%), Positives = 160/241 (66%), Gaps = 29/241 (12%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR++FLP GL DRSEIPEYL GE+ GDYGYDP GL K P+ +KY+ EL+HARWAML
Sbjct: 54 GPDRKLFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAML 113
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA 164
AAG +IPE GAN WF+TGA +L+G TLNYF +P +V FAVIA
Sbjct: 114 AAAGILIPEGLQANGANI-KGGTWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIA 170
Query: 165 -EIVLVGGAEYYRITNG-----------------LDLEDKLHPGGPFDPLGLAKDPDQFA 206
E+ L+G E+YR NG D D L+PGGPFDPLGLA DP+
Sbjct: 171 VEVGLMGAVEFYR-RNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQ 229
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 266
LKVKEIKNGRLAM ++LGF +Q+YVTGEGP N KH++DPF NLLTV+ G ER PT
Sbjct: 230 ELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVL-GAEERTPT 288
Query: 267 L 267
L
Sbjct: 289 L 289
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 132/241 (54%), Positives = 159/241 (65%), Gaps = 29/241 (12%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +FLP GL DRSE+P YL GE+ GDYGYDP GL K + +KY+ YEL+HARWAML
Sbjct: 51 GPDRVLFLPSGLYDRSEVPAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWAML 110
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA 164
AAG +IPE GAN VWF+TGA +L+G TLNYF +P +V FAVIA
Sbjct: 111 AAAGILIPEGLQANGANI-KGGVWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIA 167
Query: 165 -EIVLVGGAEYYRITNG-----------------LDLEDKLHPGGPFDPLGLAKDPDQFA 206
E+ L+G E+YR NG + D ++PGGPFDPLGLA DP+ F
Sbjct: 168 IEVGLMGAVEFYR-RNGTGPAGYSPGIGKFDSSVFEGLDSIYPGGPFDPLGLADDPEVFQ 226
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 266
LKVKEIKNGRLAM ++L F +Q+YVTGEGP N KH+ DPF NLLTV+ GN +R PT
Sbjct: 227 ELKVKEIKNGRLAMVSVLAFAIQSYVTGEGPYTNWIKHVQDPFGYNLLTVL-GNEDRVPT 285
Query: 267 L 267
L
Sbjct: 286 L 286
>gi|62733871|gb|AAX95980.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864187|gb|ABA92339.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 245
Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 119/131 (90%), Positives = 125/131 (95%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIHARWAML
Sbjct: 67 GPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAML 126
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV AE+VLVG
Sbjct: 127 GAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVG 186
Query: 171 GAEYYRITNGL 181
GAEYYRI NGL
Sbjct: 187 GAEYYRIINGL 197
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 134/241 (55%), Positives = 160/241 (66%), Gaps = 29/241 (12%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR++FLP GL DRSEIP+YL GE+ GDYGYDP GL K P+ +KY+ EL+HARWAML
Sbjct: 24 GPDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAML 83
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA 164
AAG +IPE GAN WF+TGA +L+G TLNYF +P +V FAVIA
Sbjct: 84 AAAGILIPEGLQANGANI-KGGTWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIA 140
Query: 165 -EIVLVGGAEYYRITNG-----------------LDLEDKLHPGGPFDPLGLAKDPDQFA 206
E+ L+G E+YR NG D D L+PGGPFDPLGLA DP+
Sbjct: 141 VEVGLMGAVEFYR-RNGSGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQ 199
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 266
LKVKEIKNGRLAM ++LGF +Q+YVTGEGP N KH++DPF NLLTV+ G ER PT
Sbjct: 200 ELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVL-GAEERTPT 258
Query: 267 L 267
L
Sbjct: 259 L 259
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/241 (53%), Positives = 154/241 (63%), Gaps = 29/241 (12%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP R +FLP GLLD S++P YL G + GDYGYDP GL K KY+AYELIHARWAML
Sbjct: 95 GPSRALFLPGGLLDPSDVPTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELIHARWAML 154
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-----NIPINLVFAVIAE 165
AAG IIPE GA WF+TGA +L+G TLNYF N P+ L V+ E
Sbjct: 155 AAAGIIIPEGLQANGAAI-KGGTWFETGAEMLNGGTLNYFAVPWGIINNPLPLFLVVVIE 213
Query: 166 IVLVGGAEYYR-------------------ITNGLDLEDKLHPGGPFDPLGLAKDPDQFA 206
+ L+G E YR I +GLD L+PGGPFDPLGLA DP+ FA
Sbjct: 214 VALLGAVERYRQSGEGPPGYSPGVGKFDSSIFSGLD---NLYPGGPFDPLGLADDPETFA 270
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 266
LKVKEIKNGRLA+ ++LGF +Q+YVTGEGP N +KH++DPF NLLT+I G +R PT
Sbjct: 271 ELKVKEIKNGRLALISVLGFAVQSYVTGEGPYANWSKHVADPFGYNLLTII-GAEDRVPT 329
Query: 267 L 267
L
Sbjct: 330 L 330
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/238 (54%), Positives = 156/238 (65%), Gaps = 23/238 (9%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +FLP GL+ R EI L G +PGDYGYDP GL+K + SKYQA EL+HARWAML
Sbjct: 50 GPDRALFLPGGLMARDEINPLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLHARWAML 109
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG---KNI--PINLVFAVIAE 165
AAG IIPE GA+ A WF+TGA +L+G TLN+F NI P+ L V A
Sbjct: 110 AAAGAIIPEGLAANGADV-KGATWFETGAAMLNGGTLNWFAVPIANISNPLPLFVVVAAN 168
Query: 166 IVLVGGAEYYRIT----------------NGLDLEDKLHPGGPFDPLGLAKDPDQFALLK 209
+ L+G AE YR T + D D L+PGGPFDPLGLA DP+ A LK
Sbjct: 169 VALMGAAENYRRTGEGPAGYSPGVGKFDESAYDSMDSLYPGGPFDPLGLADDPEVLAELK 228
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
VKEIKNGRLAM + LGF +QA VTGEGP N +KH++DPF NLLT+++G +RAPTL
Sbjct: 229 VKEIKNGRLAMVSFLGFAVQAAVTGEGPYANWSKHVADPFGYNLLTILAGE-DRAPTL 285
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/238 (51%), Positives = 155/238 (65%), Gaps = 23/238 (9%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R++FLP GLLDR ++PEYL GE+ GDYGYDP GL K + KY+A EL+HARWAML
Sbjct: 48 GPERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHARWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-----NIPINLVFAVIAE 165
AAG +IPE GA+ WF+TGA +L+G TLNYF P+ L + E
Sbjct: 108 AAAGILIPEGLQANGADI-KGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLAAVTLIE 166
Query: 166 IVLVGGAEYYRI----------------TNGLDLEDKLHPGGPFDPLGLAKDPDQFALLK 209
IVL+G E +R+ ++ D D+L+PGGPFDPL LA DP+ FA L+
Sbjct: 167 IVLLGAVEKFRVDGTGPAGFSPGVGKFDSDIFDGLDQLYPGGPFDPLNLADDPEVFAELQ 226
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
VKE KNGRLAM +L F +Q+YVTGEGP N KH+SDPF NLLTV+ G+ +R PTL
Sbjct: 227 VKETKNGRLAMVGVLAFAIQSYVTGEGPYANFTKHISDPFGYNLLTVLQGD-DRVPTL 283
>gi|108864185|gb|ABG22425.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 186
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 105/115 (91%), Positives = 110/115 (95%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIHARWAML
Sbjct: 67 GPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAML 126
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 165
GAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV AE
Sbjct: 127 GAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAE 181
>gi|224034685|gb|ACN36418.1| unknown [Zea mays]
Length = 186
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/137 (80%), Positives = 119/137 (86%), Gaps = 2/137 (1%)
Query: 29 KPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 88
KP + S SP S L K GPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL
Sbjct: 47 KPSAVSSSSPDISDELAKWY--GPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLG 104
Query: 89 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 148
KKP+DF+KYQAYELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTL+
Sbjct: 105 KKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLS 164
Query: 149 YFGKNIPINLVFAVIAE 165
YFG +IPINLV AVIAE
Sbjct: 165 YFGNSIPINLVVAVIAE 181
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/208 (53%), Positives = 143/208 (68%), Gaps = 11/208 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL ++ P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAML
Sbjct: 38 GPDRATFLGP----FTDTPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAML 93
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE K G + G EAVWFK GA + + LNY G + ++ ++ + +++
Sbjct: 94 GALGCVTPELLAKNGVSFG-EAVWFKAGAQIFGSDGLNYLGNSSLVHAQSIIATLACQVI 152
Query: 168 LVGGAEYYRITN---GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+GGAE YR GL+ D L+PGGPFDPLGLA DPD F+ LKVKEIKNGRLAMF+M
Sbjct: 153 LMGGAEAYRAAGEGPGLEGLDSLYPGGPFDPLGLADDPDTFSELKVKEIKNGRLAMFSMF 212
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 213 GFFVQAIVTGKGPIENLSDHLADPGVNN 240
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 139/209 (66%), Gaps = 9/209 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL G ++ PEYLTGE PGDYG+D GLS P F++Y+ ELIHARWA+L
Sbjct: 35 GPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALL 92
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE +++ E VWFK GA + LNY G I+ ++ + ++V
Sbjct: 93 GALGILTPELLSQYAGVQFGEPVWFKAGAQIFAAGGLNYLGNESLIHAQSIIATLAVQVV 152
Query: 168 LVGGAEYYRITNG----LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G AE YR G LD D L+PGGPFDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 LMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSC 212
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
LGFF+QA VTG+GPV+NL HL+DP NN
Sbjct: 213 LGFFVQAIVTGKGPVQNLTDHLADPTVNN 241
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 139/209 (66%), Gaps = 9/209 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL G ++ PEYLTGE PGDYG+D GLS P F++Y+ ELIHARWA+L
Sbjct: 35 GPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALL 92
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE +++ E VWFK GA + LNY G I+ ++ + ++V
Sbjct: 93 GALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVV 152
Query: 168 LVGGAEYYRITNG----LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G AE YR G LD D L+PGGPFDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 LMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSC 212
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
LGFF+QA VTG+GPV+NL HL+DP NN
Sbjct: 213 LGFFVQAIVTGKGPVQNLTDHLADPTVNN 241
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/249 (48%), Positives = 155/249 (62%), Gaps = 13/249 (5%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPS--GPDRRIFLPEGLLDRSEIPEYL 72
+ LLS+ + S RR S S +T++S GPDR FL G P YL
Sbjct: 3 SALLSNSFVVSARRTV----SSPKSKGKQVTRASIEWYGPDRPKFL--GPYSDGATPSYL 56
Query: 73 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 132
GE PGDYG+D GLS P+ FS+Y+ E+IH+RWA+LG G + PE K+G EA
Sbjct: 57 KGEYPGDYGWDTAGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEA 116
Query: 133 VWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNG--LDLEDKL 187
VWFK GA + + LNY G ++ ++ V +++L+G AE YR+ G ++ D L
Sbjct: 117 VWFKAGAQIFSADGLNYLGNPSLVHAQSIIATVATQVILLGLAEGYRVNGGPAGEITDPL 176
Query: 188 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 247
+PGG FDPLGLA DPD FA LKVKEIKNGRLA FA LGFF+QA VTG+GP++NL HL+D
Sbjct: 177 YPGGAFDPLGLADDPDTFAELKVKEIKNGRLAQFAALGFFVQAIVTGKGPIQNLEDHLAD 236
Query: 248 PFANNLLTV 256
PFA N T+
Sbjct: 237 PFAVNGFTI 245
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/209 (54%), Positives = 138/209 (66%), Gaps = 9/209 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL G ++ PEYLTGE PGDYG+D GLS P F++Y+ ELIHARWA+L
Sbjct: 35 GPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALL 92
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE +++ E VWFK GA + LNY G I+ ++ + ++V
Sbjct: 93 GALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVV 152
Query: 168 LVGGAEYYRITNG----LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G AE YR G LD D L+PGGPFDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 LMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSC 212
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
LGFF+QA VTG+GPV+NL HL+DP N
Sbjct: 213 LGFFVQAIVTGKGPVQNLTDHLADPTVNK 241
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 112/208 (53%), Positives = 141/208 (67%), Gaps = 11/208 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL +E P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAML
Sbjct: 33 GPDRAGFLGP----FTESPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAML 88
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE K G + G EAVWFK GA + + LNY G ++ ++ + +++
Sbjct: 89 GALGCVTPELLAKNGVSFG-EAVWFKAGAQIFGSDGLNYLGNPSLVHAQSIIATLACQVI 147
Query: 168 LVGGAEYYRITN---GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+GGAE YR G++ D L+PGGPFDPLGLA DPD FA LK KEIKNGRLAMF+M
Sbjct: 148 LMGGAEAYRANGEGPGVEGLDSLYPGGPFDPLGLADDPDTFAELKTKEIKNGRLAMFSMF 207
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 208 GFFVQAIVTGKGPIENLSDHLADPGVNN 235
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 118/210 (56%), Positives = 140/210 (66%), Gaps = 13/210 (6%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL G ++P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 34 GPDRPKFL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 91
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA---- 164
GA G + PE +K+ EAVWFK GA + LNY G NLV A +IA
Sbjct: 92 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE---NLVHAQSIIATLAF 148
Query: 165 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
++V++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 149 QVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 208
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 209 MFGFFVQAIVTGKGPIENLSDHLANPSAVN 238
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/230 (53%), Positives = 146/230 (63%), Gaps = 13/230 (5%)
Query: 37 SPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 96
S S +P L+ GPDR FL G + P YLTGE PGDYG+D GLS P+ F +
Sbjct: 40 SGSTAPQLSSWPWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKR 97
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
Y+ ELIHARWAMLGA G + PE +K+ EAVWFK GA + LNY G
Sbjct: 98 YRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE--- 154
Query: 157 NLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALL 208
NLV A +IA ++V++G AE YR G E D LHPGG FDPLGLA DPD FA L
Sbjct: 155 NLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAEL 214
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P A N +
Sbjct: 215 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVNAFAYAT 264
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/210 (56%), Positives = 139/210 (66%), Gaps = 13/210 (6%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 35 GPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 92
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA---- 164
GA G + PE +K+ EAVWFK GA + LNY G NLV A +IA
Sbjct: 93 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE---NLVHAQSIIATLAF 149
Query: 165 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
++V++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 150 QVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 209
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 210 MFGFFVQAIVTGKGPIENLSDHLANPSAVN 239
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/210 (56%), Positives = 139/210 (66%), Gaps = 13/210 (6%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 35 GPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 92
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA---- 164
GA G + PE +K+ EAVWFK GA + LNY G NLV A +IA
Sbjct: 93 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE---NLVHAQSIIATLAF 149
Query: 165 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
++V++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 150 QVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 209
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 210 MFGFFVQAIVTGKGPIENLSDHLANPSAVN 239
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/210 (56%), Positives = 139/210 (66%), Gaps = 13/210 (6%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 36 GPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 93
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA---- 164
GA G + PE +K+ EAVWFK GA + LNY G NLV A +IA
Sbjct: 94 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE---NLVHAQSIIATLAF 150
Query: 165 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
++V++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 151 QVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 210
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 211 MFGFFVQAIVTGKGPIENLSDHLANPSAVN 240
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/210 (56%), Positives = 139/210 (66%), Gaps = 13/210 (6%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 35 GPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 92
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA---- 164
GA G + PE +K+ EAVWFK GA + LNY G NLV A +IA
Sbjct: 93 GALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEGGLNYLGNE---NLVHAQSIIATLAF 149
Query: 165 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
++V++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 150 QVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 209
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 210 MFGFFVQAIVTGKGPIENLSDHLANPSAVN 239
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 140/210 (66%), Gaps = 7/210 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G +P YLTGE PGDYG+D GLS P+ F+ Y+ E+IHARWAML
Sbjct: 130 GPDRALWL--GPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAML 187
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K+ E VWFK G+ + L+Y G + + A++A +++
Sbjct: 188 GALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVI 247
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+MLG
Sbjct: 248 LMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLG 307
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
F++QA TG+GPVEN A+H++DP N LT
Sbjct: 308 FYVQAIATGKGPVENWAEHIADPAGVNGLT 337
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/208 (53%), Positives = 141/208 (67%), Gaps = 10/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F+ Y+ ELIHARWAML
Sbjct: 36 GPDRAKWLGP---FSDDTPSYLTGEFPGDYGWDTAGLSADPETFASYRELELIHARWAML 92
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIV 167
GA G + PE +K+ EAVWFK GA + L+Y G + + + A++ ++V
Sbjct: 93 GALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGNSSLVHAQSILAILGCQVV 152
Query: 168 LVGGAEYYRITNG---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+GGAE +R+ G DL DKLHPGG FDPLGLA DPD F+ LKVKEIKNGRLAMF+M
Sbjct: 153 LMGGAEAFRVNGGPLGEDL-DKLHPGGAFDPLGLADDPDTFSELKVKEIKNGRLAMFSMF 211
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GPVEN A+H++DP +N
Sbjct: 212 GFFVQAIVTGKGPVENWAEHIADPSGSN 239
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 140/210 (66%), Gaps = 7/210 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G +P YLTGE PGDYG+D GLS P+ F+ Y+ E+IHARWAML
Sbjct: 117 GPDRALWL--GPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAML 174
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K+ E VWFK G+ + L+Y G + + A++A +++
Sbjct: 175 GALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVI 234
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+MLG
Sbjct: 235 LMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLG 294
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
F++QA TG+GPVEN A+H++DP N LT
Sbjct: 295 FYVQAIATGKGPVENWAEHIADPAGVNGLT 324
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 139/209 (66%), Gaps = 7/209 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARWAML
Sbjct: 114 GPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 171
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE +K+ E VWFK G+ + L+Y G I + A++A ++V
Sbjct: 172 GALGCVTPELLSKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLIHAQSILAILACQVV 231
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+MLG
Sbjct: 232 LMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLG 291
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLL 254
F++QA TG+GPVEN A+H++DP N L
Sbjct: 292 FYVQAIATGKGPVENWAEHIADPSGVNGL 320
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 145/218 (66%), Gaps = 9/218 (4%)
Query: 40 PSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
P +T GPDR ++ + P YLTGE PGDYG+D GLS +P+ F+K +
Sbjct: 43 PRQSITGGPWYGPDRVKYMGP---FSGQTPSYLTGEFPGDYGWDSAGLSAEPETFAKNRE 99
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPIN 157
E+IHARWAMLG G I+PE + G G EAVWFK G+ + LNY G K I
Sbjct: 100 LEVIHARWAMLGTVGCIVPELLERNGVKIG-EAVWFKAGSQIFRDEGLNYLGDPKLIHAQ 158
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ AV+A +++L+G E YRI+ G E D L+PGG FDPL LA DP++FA+LKVKEIK
Sbjct: 159 NILAVLAAQVILMGAIEGYRISGGPLGEPTDPLYPGGNFDPLHLADDPEEFAILKVKEIK 218
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMFAMLGF++QA VTG+GP+ENL HL+DPF NN
Sbjct: 219 NGRLAMFAMLGFYVQAIVTGKGPLENLYDHLADPFKNN 256
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 156/253 (61%), Gaps = 20/253 (7%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ S+ ++ S S SPSP GPDR ++L
Sbjct: 26 LLGVGAGVHGEARVTMRKSSTTKKV-----SASASPSPWY------GPDRVLYLGP---F 71
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 72 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 131
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 132 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 190
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 191 LGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 250
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP NN
Sbjct: 251 NLADHLADPVTNN 263
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 138/210 (65%), Gaps = 7/210 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G +P YLTGE PGDYG+D GLS P+ F KY+ ELIHARWAML
Sbjct: 32 GPDRAKWL--GPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAML 89
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE K+G E+VWF+ GA + L+Y G I+ + VI++++
Sbjct: 90 GALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVI 149
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M G
Sbjct: 150 LMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFG 209
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
F++QA VTG+GPVEN A+H++DPF N +
Sbjct: 210 FYVQAIVTGKGPVENWAEHVADPFTANAFS 239
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 138/210 (65%), Gaps = 7/210 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G +P YLTGE PGDYG+D GLS P+ F KY+ ELIHARWAML
Sbjct: 35 GPDRAKWL--GPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAML 92
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE K+G E+VWF+ GA + L+Y G I+ + VI++++
Sbjct: 93 GALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVI 152
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M G
Sbjct: 153 LMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFG 212
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
F++QA VTG+GPVEN A+H++DPF N +
Sbjct: 213 FYVQAIVTGKGPVENWAEHIADPFTANAFS 242
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/213 (50%), Positives = 140/213 (65%), Gaps = 7/213 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARWAML
Sbjct: 130 GPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 187
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
G G + PE K+ E VWFK G+ + L+Y G + + A++A +++
Sbjct: 188 GTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVI 247
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+MLG
Sbjct: 248 LMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLG 307
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
F++QA TG+GPVEN A+H++DP N LT+ +
Sbjct: 308 FYVQAISTGKGPVENWAEHIADPSGVNGLTLAT 340
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/213 (50%), Positives = 140/213 (65%), Gaps = 7/213 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARWAML
Sbjct: 129 GPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAML 186
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
G G + PE K+ E VWFK G+ + L+Y G + + A++A +++
Sbjct: 187 GTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVI 246
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+GGAE YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+MLG
Sbjct: 247 LMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMLG 306
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
F++QA TG+GPVEN A+H++DP N LT+ +
Sbjct: 307 FYVQAISTGKGPVENWAEHIADPSGVNGLTLAT 339
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/253 (48%), Positives = 154/253 (60%), Gaps = 21/253 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ R+ S S SPSP GPDR ++L
Sbjct: 26 LLGVGAGVHGEARVTM------RKSSTKKVSASASPSPWY------GPDRVLYLGP---F 70
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 71 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 130
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 131 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 189
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 190 LGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 249
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP NN
Sbjct: 250 NLADHLADPVTNN 262
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/212 (53%), Positives = 140/212 (66%), Gaps = 8/212 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G P YLTGE PGDYG+D GL+ P F+KY+ ELIHARWAML
Sbjct: 141 GPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 198
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PEA K G E VWFK GA + L+Y G + + + A++A ++V
Sbjct: 199 GALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVV 257
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G AE YR+ G + D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMFAM G
Sbjct: 258 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 317
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
F++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 318 FYVQALVTGEGPVENWAAHVADPFNVNGLTAV 349
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/212 (53%), Positives = 140/212 (66%), Gaps = 8/212 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G P YLTGE PGDYG+D GL+ P F+KY+ ELIHARWAML
Sbjct: 381 GPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 438
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PEA K G E VWFK GA + L+Y G + + + A++A ++V
Sbjct: 439 GALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVV 497
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G AE YR+ G + D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMFAM G
Sbjct: 498 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 557
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
F++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 558 FYVQALVTGEGPVENWAAHVADPFNVNGLTAV 589
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 78/102 (76%), Gaps = 3/102 (2%)
Query: 159 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A++A ++VL+G AE YR+ G + D L+PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 8 ILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKN 67
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
GRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 68 GRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 109
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/212 (53%), Positives = 141/212 (66%), Gaps = 8/212 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GL+ P F+KY+ ELIHARWAML
Sbjct: 364 GPNRNKWL--GPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 421
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PEA K G E VWFK GA + L+Y G + + + A++A ++V
Sbjct: 422 GALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVV 480
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G AE YR+ G + D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMFAM G
Sbjct: 481 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 540
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
F++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 541 FYVQALVTGEGPVENWAAHVADPFNVNGLTAV 572
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/212 (53%), Positives = 141/212 (66%), Gaps = 8/212 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GL+ P F+KY+ ELIHARWAML
Sbjct: 604 GPNRNKWL--GPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 661
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PEA K G E VWFK GA + L+Y G + + + A++A ++V
Sbjct: 662 GALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVV 720
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G AE YR+ G + D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMFAM G
Sbjct: 721 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 780
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
F++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 781 FYVQALVTGEGPVENWAAHVADPFNVNGLTAV 812
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/212 (53%), Positives = 140/212 (66%), Gaps = 8/212 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G P YLTGE PGDYG+D GL+ P F+KY+ ELIHARWAML
Sbjct: 124 GPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAML 181
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PEA K G E VWFK GA + L+Y G + + + A++A ++V
Sbjct: 182 GALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVV 240
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G AE YR+ G + D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMFAM G
Sbjct: 241 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 300
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
F++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 301 FYVQALVTGEGPVENWAAHVADPFNVNGLTAV 332
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 70/92 (76%), Gaps = 2/92 (2%)
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G AE YR+ G + D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMFAM G
Sbjct: 1 LMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFG 60
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
F++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 61 FYVQALVTGEGPVENWAAHVADPFNVNGLTAV 92
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 155/253 (61%), Gaps = 21/253 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ R+ S+S S SP GPDR ++L
Sbjct: 26 LLGVGAGVHGEARVTM------RKAATKKVSVSASTSPWY------GPDRVLYLGP---F 70
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 71 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 130
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 131 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 189
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 190 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 249
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP +NN
Sbjct: 250 NLADHLADPVSNN 262
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 155/253 (61%), Gaps = 21/253 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ R+ S+S S SP GPDR ++L
Sbjct: 26 LLGVGAGVHGEARVTM------RKATTKKVSVSASTSPWY------GPDRVLYLGP---F 70
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 71 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 130
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 131 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 189
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 190 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 249
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP +NN
Sbjct: 250 NLADHLADPVSNN 262
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/253 (49%), Positives = 156/253 (61%), Gaps = 18/253 (7%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLP-------SLSPSPSPPLTKSSP-SGPDRRIFLPEGLLD 64
T+ LSSP L+ K P P S+ S S ++ SP GPDR +L
Sbjct: 4 STMALSSPSLAGKAVKLAPSTPELNVGRVSMRKSASRNVSSGSPWYGPDRVKYLGP---F 60
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 61 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 121 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 180 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 239
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP NN
Sbjct: 240 NLADHLADPVTNN 252
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 121/250 (48%), Positives = 153/250 (61%), Gaps = 15/250 (6%)
Query: 15 TLLLSSPLLSSPRRKPPL------LPSLSPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSE 67
T+ LSSP L+ + + P P + SP G DR ++L G L E
Sbjct: 5 TMALSSPALAGKAAAKVFGEGRITMRKSAAKPKPAASSGSPWYGADRVLYL--GPLSGRE 62
Query: 68 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 127
P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLG G + PE + G
Sbjct: 63 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFPELLARNGVK 122
Query: 128 CGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LD 182
G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI G +
Sbjct: 123 FG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGE 181
Query: 183 LEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 242
+ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 182 VVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 241
Query: 243 KHLSDPFANN 252
HL+DP NN
Sbjct: 242 DHLADPVNNN 251
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 117/207 (56%), Positives = 136/207 (65%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 34 GPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 91
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K G G EAVWFK GA + LNY G I + A +A ++V
Sbjct: 92 GALGCITPELLAKNGIPFG-EAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVV 150
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 151 VMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 210
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP++NL HL++P A N
Sbjct: 211 FFVQAIVTGKGPIQNLDDHLANPTAVN 237
>gi|224284808|gb|ACN40134.1| unknown [Picea sitchensis]
Length = 208
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 96/108 (88%), Positives = 102/108 (94%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGLSKKP++F KYQAYELIHARWAML
Sbjct: 87 GPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAML 146
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 158
GAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPIN
Sbjct: 147 GAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINF 194
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 125/259 (48%), Positives = 157/259 (60%), Gaps = 31/259 (11%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPS-----GPDRRIFL 58
T+ LSSP + K LSPS S + KS+PS GPDR +L
Sbjct: 5 TMALSSPSFAGQAVK------LSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYL 58
Query: 59 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 118
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 59 GP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 119 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 175
E ++ G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E Y
Sbjct: 116 ELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 174
Query: 176 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
RI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 175 RIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 234 GEGPVENLAKHLSDPFANN 252
G+GP+ENLA HL+DP NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 123/253 (48%), Positives = 158/253 (62%), Gaps = 19/253 (7%)
Query: 15 TLLLSSPLLS--SPRRKPPL-------LPSLSPSPSPPLTKSSP-SGPDRRIFLPEGLLD 64
T+ LSSP+++ +P L + + P P + SP G DR ++L G L
Sbjct: 5 TMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYL--GPLS 62
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 63 -GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 121
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 122 GVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 180
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 181 LGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 141/219 (64%), Gaps = 12/219 (5%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
S+ GP+R +L G +P YLTGE+PGDYG+D GL P +Y+ ELIH R
Sbjct: 466 SAWYGPNRNKWL--GPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGR 523
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA 164
WAMLGA G +PE N+F E +WFK GA + LNYFG+ I+ + A++A
Sbjct: 524 WAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILA 583
Query: 165 -EIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 217
+++L+G E YR N G DL D+L+PGGPFDPLGLA DPD FA LKVKEIKNGR
Sbjct: 584 TQVLLMGAVEAYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFAELKVKEIKNGR 642
Query: 218 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 256
LAM AMLGF+ QA VTGEGPVEN HL DP A+N LT
Sbjct: 643 LAMMAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTA 681
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 110/198 (55%), Positives = 132/198 (66%), Gaps = 10/198 (5%)
Query: 68 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 127
+P YLTGE+PGDYG+D GL P +Y+ ELIH RWAMLGA G +PE N+F
Sbjct: 1 VPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGV 60
Query: 128 CGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITN----- 179
E +WFK GA + LNYFG+ I+ + A++A +++L+G E YR N
Sbjct: 61 QFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNTAPGQ 120
Query: 180 -GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238
G DL D+L+PGGPFDPLGLA DPD FA LKVKEIKNGRLAM AMLGF+ QA VTGEGPV
Sbjct: 121 FGEDL-DRLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMVAMLGFYAQAIVTGEGPV 179
Query: 239 ENLAKHLSDPFANNLLTV 256
EN HL DP A+N LT
Sbjct: 180 ENWLYHLQDPSAHNGLTA 197
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 109/222 (49%), Positives = 135/222 (60%), Gaps = 11/222 (4%)
Query: 43 PLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 102
P S GPDR +L G + P YL GE+PGDYG+D GL P +Y+ EL
Sbjct: 219 PAGLSQWYGPDRSKWL--GPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAEL 276
Query: 103 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LV 159
IH RWAMLGA G + PE ++ E VWFK GA + L+Y G ++ ++
Sbjct: 277 IHGRWAMLGALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSIL 336
Query: 160 FAVIAEIVLVGGAEYYRITNGL-----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ +++L+G AE YR NGL DL D L+PGGPFDPLGLA DPD A LKVKEIK
Sbjct: 337 LILGTQVLLMGAAEAYRTGNGLGNFGKDL-DSLYPGGPFDPLGLANDPDTLAELKVKEIK 395
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 256
NGRLAMFAM GF++QA VTGE P+ENL+ HL+ PF N L
Sbjct: 396 NGRLAMFAMFGFYVQAIVTGESPLENLSAHLASPFTVNGLNA 437
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 137/210 (65%), Gaps = 10/210 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL G + PEYLTGE PGDYG+D GLS P F++Y+ ELIHARWAML
Sbjct: 30 GPDRPKFL--GPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAML 87
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G ++PE K G VWFK GA + + LNY G I + A +A ++V
Sbjct: 88 GALGCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAFQVV 147
Query: 168 LVGGAEYYRITNG-----LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
++G AE +R G L+ D+L+PG FDP+GLA+DPD FA LKVKEIKNGRLAMF+
Sbjct: 148 VMGAAESFRFNGGAPGGFLEGNDRLYPGDQFDPMGLAEDPDTFAELKVKEIKNGRLAMFS 207
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
M GFF+QA VTG+GP+ NL HL+DP NN
Sbjct: 208 MFGFFVQAIVTGQGPIANLDAHLADPSVNN 237
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 141/219 (64%), Gaps = 12/219 (5%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
S+ GP+R +L G +P YLTGE+PGDYG+D GL P +Y+ ELIH R
Sbjct: 239 SAWYGPNRNKWL--GPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGR 296
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA 164
WAMLGA G +PE N+F E +WFK GA + LNYFG+ I+ + A++A
Sbjct: 297 WAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILA 356
Query: 165 -EIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 217
+++L+G E YR N G DL D+L+PGGPFDPLGLA DPD FA LKVKEIKNGR
Sbjct: 357 TQVLLMGAVEAYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFAELKVKEIKNGR 415
Query: 218 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 256
LAM AMLGF+ QA VTGEGPVEN HL DP A+N LT
Sbjct: 416 LAMVAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTA 454
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 132/213 (61%), Gaps = 11/213 (5%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 111
PDR +L G + P YL GE+PGDYG+D GL P +Y+ ELIH RWAMLG
Sbjct: 1 PDRSKWL--GPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLG 58
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL 168
A G + PE ++ E VWFK GA + L+Y G ++ ++ + +++L
Sbjct: 59 ALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLL 118
Query: 169 VGGAEYYRITNGL-----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
+G AE YR NGL DL D L+PGGPFDPLGLA DPD A LKVKEIKNGRLAMFAM
Sbjct: 119 MGAAEAYRTGNGLGNFGKDL-DSLYPGGPFDPLGLANDPDTLAELKVKEIKNGRLAMFAM 177
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 256
GF++QA VTGE P+ENL+ HL+ PF N L
Sbjct: 178 FGFYVQAIVTGESPLENLSAHLASPFTVNGLNA 210
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 147/227 (64%), Gaps = 10/227 (4%)
Query: 35 SLSPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
S+ + + P+ SSP GPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 34 SMRKTVAKPVASSSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 149
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
I + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA L
Sbjct: 150 SLIHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 256
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 124/253 (49%), Positives = 156/253 (61%), Gaps = 18/253 (7%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLP-------SLSPSPSPPLTKSSP-SGPDRRIFLPEGLLD 64
T+ LSSP L+ K P P S+ S S ++ SP GPDR +L
Sbjct: 1 STMALSSPSLAGKAVKLAPSTPELNVGRVSMRKSASRNVSSGSPWYGPDRVKYLGP---F 57
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 58 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 117
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 118 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVLLMGAVEGYRIAGGP 176
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 177 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 236
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP NN
Sbjct: 237 NLADHLADPVTNN 249
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 206 bits (524), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 125/259 (48%), Positives = 156/259 (60%), Gaps = 31/259 (11%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPS-----GPDRRIFL 58
T+ LSSP + K LSPS S + KS+PS GPDR +L
Sbjct: 5 TMALSSPSFAGQAVK------LSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYL 58
Query: 59 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 118
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 59 GP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 119 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 175
E + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E Y
Sbjct: 116 ELLARNGVKFG-EAVWFKAGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 174
Query: 176 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
RI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 175 RIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 234 GEGPVENLAKHLSDPFANN 252
G+GP+ENLA HL+DP NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/225 (49%), Positives = 147/225 (65%), Gaps = 10/225 (4%)
Query: 37 SPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ S S ++ SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 38 TASKSKNVSSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFA 94
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH+RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G
Sbjct: 95 KNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSL 153
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKV
Sbjct: 154 VHAQSILAIWATQVILMGAVEGYRVAGGPLGEITDPLYPGGSFDPLGLAEDPEAFAELKV 213
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
KE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 214 KELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWS 258
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 157/253 (62%), Gaps = 18/253 (7%)
Query: 15 TLLLSSPLLS--SPRRKPPL-------LPSLSPSPSPPLTKSSP-SGPDRRIFLPEGLLD 64
T+ LSSP+++ +P L + + P P + SP G DR ++L G L
Sbjct: 5 TMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYL--GPLS 62
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 63 GREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 122
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 123 GVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 181
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D L+PGG FDPLGLA DP+ A LKVK+IKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 182 LGEVVDPLYPGGAFDPLGLADDPEACAELKVKKIKNGRLAMFSMFGFFVQAIVTGKGPLE 241
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP NN
Sbjct: 242 NLADHLADPVNNN 254
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 146/224 (65%), Gaps = 10/224 (4%)
Query: 35 SLSPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
S+ + + P+ SSP GPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 34 SMRKTVAKPVASSSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 149
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
+ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA L
Sbjct: 150 SLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/253 (48%), Positives = 153/253 (60%), Gaps = 18/253 (7%)
Query: 11 QVHQTLLLSSPLLSSPR---RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSE 67
Q +T SS L + R RK +PS SP GPDR +L E
Sbjct: 15 QAVKTSPSSSELFGNGRVSMRKTAAAKKAAPSGSPWY------GPDRVKYLGP---FSGE 65
Query: 68 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 127
P YLTGE PGDYG+D GLS P+ FSK + E+IH RWAMLGA G + PE + G
Sbjct: 66 APSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVK 125
Query: 128 CGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LD 182
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI G +
Sbjct: 126 FG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGE 184
Query: 183 LEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 242
+ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 185 VVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
Query: 243 KHLSDPFANNLLT 255
HL+DP ANN +
Sbjct: 245 DHLADPVANNAWS 257
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/257 (47%), Positives = 156/257 (60%), Gaps = 19/257 (7%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLP--------SLSPSPSPPLTKSSP-SGPDRRIFLPEGLL 63
T+ LSSP + K P P S+ + + P+ SSP GPDR +L
Sbjct: 4 STMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP--- 60
Query: 64 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 123
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 61 FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 124 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 180
G G EAVWFK G+ + L+Y G I + A+ A +++L+G E YR+ G
Sbjct: 121 NGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVAGG 179
Query: 181 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 PLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 239 ENLAKHLSDPFANNLLT 255
ENLA HL+DP NN +
Sbjct: 240 ENLADHLADPVNNNAWS 256
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/259 (48%), Positives = 156/259 (60%), Gaps = 31/259 (11%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPS-----GPDRRIFL 58
T+ LSSP + K LSPS S + KS+PS GPDR +L
Sbjct: 5 TMALSSPSFAGQAVK------LSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYL 58
Query: 59 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 118
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 59 GP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 119 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 175
E + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E Y
Sbjct: 116 ELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 174
Query: 176 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
RI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 175 RIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 234 GEGPVENLAKHLSDPFANN 252
G+GP+ENLA HL+DP NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/254 (48%), Positives = 154/254 (60%), Gaps = 19/254 (7%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLP--------SLSPSPSPPLTKSSP-SGPDRRIFLPEGLL 63
T+ LSSP + K P P S+ S P++ SP GPDR +L
Sbjct: 4 STMALSSPSFAGKAVKLTPSAPGLMGNARVSMRKSVGKPVSSGSPWYGPDRVKYLGP--- 60
Query: 64 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 123
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 124 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 180
G G EAVWFK GA + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 121 NGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGG 179
Query: 181 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238
++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 239 ENLAKHLSDPFANN 252
ENLA HL+DP NN
Sbjct: 240 ENLADHLADPVNNN 253
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 156/253 (61%), Gaps = 19/253 (7%)
Query: 15 TLLLSSPLLSSPRRK-PPLLP--------SLSPSPSPPLTKSSPS-GPDRRIFLPEGLLD 64
T+ LSSP + K P P S+ + + P+ SSP GPDR +L
Sbjct: 5 TMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP---F 61
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 62 SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 121
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 122 GVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP 180
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/223 (51%), Positives = 145/223 (65%), Gaps = 10/223 (4%)
Query: 39 SPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 97
+ + P + SSP GPDR +L E P YLTGE P DYG+D GLS P+ F+K
Sbjct: 40 TKAKPASSSSPWYGPDRVKYLGP---FSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKN 96
Query: 98 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 155
+ E+IH RWAMLGA G + PE F + G G EAVWFK GA + L+Y G +
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVH 155
Query: 156 INLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 212
+ A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKE
Sbjct: 156 AQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKE 215
Query: 213 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
IKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 216 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/207 (56%), Positives = 136/207 (65%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 34 GPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 91
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K G G EAVWFK GA + LNY G I + A +A ++V
Sbjct: 92 GALGCITPELLAKNGIPFG-EAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVV 150
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 151 VMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 210
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP++NL HL++P A N
Sbjct: 211 FFVQAIVTGKGPIQNLDDHLANPTAVN 237
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/210 (56%), Positives = 138/210 (65%), Gaps = 14/210 (6%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 31 GPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 88
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA---- 164
GA G I PE K G G EAVWFK G+ + LNY G NLV A +IA
Sbjct: 89 GALGCITPELLAKNGIPFG-EAVWFKAGSQIFAEGGLNYLGNE---NLVHAQSIIATLAF 144
Query: 165 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
++V++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 145 QVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 204
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
M GFF+QA VTG+GP++NL HL++P A N
Sbjct: 205 MFGFFVQAIVTGKGPIQNLDDHLANPTAVN 234
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 144/220 (65%), Gaps = 10/220 (4%)
Query: 39 SPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 97
+ + P++ SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 39 TKAKPVSSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 98 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 155
+ E+IH RWAMLGA G + PE F + G G EAVWFK G+ + L+Y G +
Sbjct: 96 RELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVH 154
Query: 156 INLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 212
+ A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 155 AQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKE 214
Query: 213 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
IKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 215 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/259 (48%), Positives = 155/259 (59%), Gaps = 31/259 (11%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPS-----GPDRRIFL 58
T+ LSSP + K LSPS S + KS+PS GPDR +L
Sbjct: 5 TMALSSPSFAGQAVK------LSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYL 58
Query: 59 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 118
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 59 GP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 119 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 175
E + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E Y
Sbjct: 116 ELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 174
Query: 176 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
RI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 175 RIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 234 GEGPVENLAKHLSDPFANN 252
G+GP+ENLA HL+DP NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 148/227 (65%), Gaps = 13/227 (5%)
Query: 35 SLSPSPSPPLTKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKK 90
++ + + LT S+ + GPDR ++L E P YLTGE PGDYG+D GLS
Sbjct: 40 TMRKATTKKLTASASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSAD 96
Query: 91 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 150
P++F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y
Sbjct: 97 PENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYL 155
Query: 151 GKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQF 205
G + + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA+DP+ F
Sbjct: 156 GNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAF 215
Query: 206 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 216 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/253 (48%), Positives = 157/253 (62%), Gaps = 19/253 (7%)
Query: 15 TLLLSSPLLS--SPRRKPPL-------LPSLSPSPSPPLTKSSP-SGPDRRIFLPEGLLD 64
T+ LSSP+++ +P L + + P P + SP G DR ++L G L
Sbjct: 5 TMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYL--GPLS 62
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + ELIH+RWAMLGA G + PE +
Sbjct: 63 -GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARN 121
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 122 GVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGP 180
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D L+PGG FDPLGLA DP+ FA LKVKEIK GRLAMF+M GFF+QA VTG+GP+E
Sbjct: 181 LGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKKGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP NN
Sbjct: 241 NLADHLADPVNNN 253
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 145/222 (65%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ S + P++ SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 38 TASKAKPVSSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFA 94
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 95 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 153
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKV
Sbjct: 154 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 213
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|356510907|ref|XP_003524175.1| PREDICTED: uncharacterized protein LOC100789010 [Glycine max]
Length = 320
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/109 (89%), Positives = 103/109 (94%)
Query: 159 VFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 218
+ AV+AEIVLVGGAEYYRI NGLDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRL
Sbjct: 212 ILAVVAEIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRL 271
Query: 219 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
AMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVI+G+ ERAPTL
Sbjct: 272 AMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSTERAPTL 320
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/260 (48%), Positives = 155/260 (59%), Gaps = 31/260 (11%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPS-----GPDRRIF 57
T+ LSSP + K LSPS S + KS+PS GPDR +
Sbjct: 4 STMALSSPSFAGQAVK------LSPSTSEITGNGRITMRKAVAKSAPSSSPWYGPDRVKY 57
Query: 58 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 117
L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G +
Sbjct: 58 LGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 114
Query: 118 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEY 174
PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E
Sbjct: 115 PELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 173
Query: 175 YRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA V
Sbjct: 174 YRIAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233
Query: 233 TGEGPVENLAKHLSDPFANN 252
TG+GP+ENLA HL+DP NN
Sbjct: 234 TGKGPLENLADHLADPVNNN 253
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/225 (50%), Positives = 146/225 (64%), Gaps = 10/225 (4%)
Query: 37 SPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ S + P++ SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 37 TASKAKPVSSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFA 93
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 94 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 152
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKV
Sbjct: 153 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 212
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 213 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 257
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 142/222 (63%), Gaps = 13/222 (5%)
Query: 41 SPPLTKSSPSG-----PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
S + K +PSG P+R +L G + P YLTGE PGDYG+D GLS P+ F
Sbjct: 25 SKTVAKPAPSGIEWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFK 82
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP 155
+Y+ ELIHARWAMLGA G + PE +K G G EAVWFK GA + L+Y G
Sbjct: 83 RYRELELIHARWAMLGALGCVTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSL 141
Query: 156 I---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKV 210
+ N+V + +++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKV
Sbjct: 142 VHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKV 201
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL++P NN
Sbjct: 202 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAVNN 243
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/211 (54%), Positives = 134/211 (63%), Gaps = 13/211 (6%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL G + P YLTGE GDYG+D GLS P F+KY+ E+IHARWAML
Sbjct: 31 GPDRPKFL--GPFSEGDTPAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAML 88
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K G G EAVWFK GA + LNY G + + A +A +++
Sbjct: 89 GALGCITPELLAKNGVPFG-EAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVL 147
Query: 168 LVGGAEYYRITNGL------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
L+G AE YR G DL D L+PGG FDPLGLA DPD A LKVKEIKNGRLAMF
Sbjct: 148 LMGAAESYRANGGAPGGFGEDL-DSLYPGGAFDPLGLADDPDTLAELKVKEIKNGRLAMF 206
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ NL HLSDP NN
Sbjct: 207 SMFGFFVQAIVTGQGPIANLDAHLSDPSGNN 237
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/258 (48%), Positives = 157/258 (60%), Gaps = 30/258 (11%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPL----------TKSSPSG-----PDRRIFLP 59
T+ LSSP L+ K L+PS S + TK PSG PDR +L
Sbjct: 5 TMALSSPSLAGKAVK------LNPSSSEIMGNGRVSMRKTTKPVPSGSPWYGPDRVKYLG 58
Query: 60 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 59 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 115
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 176
++ G G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR
Sbjct: 116 LLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYR 174
Query: 177 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
I G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG
Sbjct: 175 IAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 234
Query: 235 EGPVENLAKHLSDPFANN 252
+GP+ENLA HLSDP NN
Sbjct: 235 KGPLENLADHLSDPVNNN 252
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 144/218 (66%), Gaps = 9/218 (4%)
Query: 40 PSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
P P + S GPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 35 PKPAASGSPWYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 91
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I
Sbjct: 92 LEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQ 150
Query: 158 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 151 SILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELK 210
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 NGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 248
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 146/226 (64%), Gaps = 12/226 (5%)
Query: 35 SLSPSPSPPLTKSSPS---GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 91
++ + S + SS S GPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 37 TMRKTASKKVVASSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADP 93
Query: 92 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 151
+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 94 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSDGGLDYLG 152
Query: 152 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 206
I + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA
Sbjct: 153 NPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFA 212
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 213 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 258
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/258 (48%), Positives = 157/258 (60%), Gaps = 30/258 (11%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPL----------TKSSPSG-----PDRRIFLP 59
T+ LSSP L+ K L+PS S + TK PSG PDR +L
Sbjct: 5 TMALSSPSLAGKAVK------LNPSSSEIMGNGRVSMRKTTKPVPSGSPWYGPDRVKYLG 58
Query: 60 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 59 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 115
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 176
++ G G EAVWFK GA + L+Y G I + A+ A ++VL+G E YR
Sbjct: 116 LLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYR 174
Query: 177 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
I G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG
Sbjct: 175 IAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 234
Query: 235 EGPVENLAKHLSDPFANN 252
+GP+ENLA HLSDP NN
Sbjct: 235 KGPLENLADHLSDPVNNN 252
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/253 (47%), Positives = 156/253 (61%), Gaps = 18/253 (7%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSLS-------PSPSPPLTKSSP-SGPDRRIFLPEGLLD 64
T+ LSSP L+ K P P LS + S ++ SP GPDR +L
Sbjct: 4 STMALSSPSLAGQAIKLSPSTPDLSGGRISMRKTASKSVSSGSPWYGPDRVKYLGP---F 60
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE +
Sbjct: 61 SGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGSVFPELLARN 120
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK G+ + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 121 GVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIAGGP 179
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 180 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/207 (51%), Positives = 137/207 (66%), Gaps = 7/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G ++P YLTGE PGDYG+D GLS P+ F Y+ ELIHARWAML
Sbjct: 29 GPDRAKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAML 86
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIV 167
GA G + PE +K+ E+VWFK G+ + L+Y G + + A++ ++V
Sbjct: 87 GALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVV 146
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D LHPG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 147 LMGLIEAYRVNGGPLGEGLDVLHPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 206
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
F++QA VTG+GP+EN A+H++DPF+ N
Sbjct: 207 FYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 116/217 (53%), Positives = 143/217 (65%), Gaps = 10/217 (4%)
Query: 42 PPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
P T SP GPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 PKATSGSPWYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCVFPELLARNGVQFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 157 ILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG GP+ENLA HL+DP NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGNGPIENLADHLADPVNNN 253
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/249 (48%), Positives = 153/249 (61%), Gaps = 15/249 (6%)
Query: 15 TLLLSSPLLSSPRRKPPL------LPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEI 68
T+ LSSP L+ + + P P + S G DR ++L G L E
Sbjct: 5 TMALSSPALAGKAAAKVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYL--GPLS-GEP 61
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 121
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 183
G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI G ++
Sbjct: 122 G-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEV 180
Query: 184 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243
D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 181 VDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 240
Query: 244 HLSDPFANN 252
HL+DP NN
Sbjct: 241 HLADPVNNN 249
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 143/223 (64%), Gaps = 9/223 (4%)
Query: 35 SLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 94
++ P+ S GPDR +FL E P YLTGE PGDYG+D GLS P+ F
Sbjct: 27 TVKPAAKSSTPDSFWYGPDRPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETF 83
Query: 95 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 153
+Y+ ELIHARWAMLGA G I PE +G G E+VWFK GA + L+Y G
Sbjct: 84 KRYRELELIHARWAMLGALGCIFPELLGSYGVPFG-ESVWFKAGAQIFQEGGLDYLGNPS 142
Query: 154 -IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLK 209
+ + A++ +++L+G E YR+ G E DKL+PGG FDPLGLA DPD FA LK
Sbjct: 143 LVHAQSILAILGTQVILMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELK 202
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
VKEIKNGRLAMF+M GFF+QA VTG+GP++NL+ HL++P NN
Sbjct: 203 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGVNN 245
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 146/224 (65%), Gaps = 10/224 (4%)
Query: 35 SLSPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
S+ + S +T SP GPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 33 SMRKTASKTVTSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 148
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
I + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA L
Sbjct: 149 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 208
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 124/263 (47%), Positives = 156/263 (59%), Gaps = 31/263 (11%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPS-----GPDRRIF 57
T+ LSSP + K LSPS S + KS+PS GPDR +
Sbjct: 4 STMALSSPSFAGQAVK------LSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKY 57
Query: 58 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 117
L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G +
Sbjct: 58 LGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 114
Query: 118 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEY 174
PE + G G E VWFK G+ + L+Y G + + A+ A ++VL+G E
Sbjct: 115 PELLARNGVKFG-EVVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 173
Query: 175 YRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA V
Sbjct: 174 YRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233
Query: 233 TGEGPVENLAKHLSDPFANNLLT 255
TG+GP+ENLA HL+DP NN +
Sbjct: 234 TGKGPLENLADHLADPVNNNAWS 256
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 140/210 (66%), Gaps = 9/210 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAML
Sbjct: 52 GPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 109 GALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 168 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
FF+QA VTG+GP+ENLA HLSDP NN +
Sbjct: 228 FFVQAIVTGKGPLENLADHLSDPVNNNAWS 257
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/207 (54%), Positives = 136/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +FL G E P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 42 GPERPLFL--GAF-TGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 98
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G I PE K G G EAVWFK GA + L+Y G + N+V + +++
Sbjct: 99 GALGCITPELLAKSGTQFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVI 157
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 158 LMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 217
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP++NL HLS+P NN
Sbjct: 218 FFVQAIVTGKGPIQNLDDHLSNPTVNN 244
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 135/207 (65%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 42 GPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 99
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G I PE K G G EAVWFK GA + L+Y G + N+V + +++
Sbjct: 100 GALGCITPELLAKSGTQFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVI 158
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 159 LMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 218
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP++NL HLS+P NN
Sbjct: 219 FFVQAIVTGKGPIQNLDDHLSNPTVNN 245
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 146/224 (65%), Gaps = 10/224 (4%)
Query: 35 SLSPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
S+ + + P++ SSP GPDR +L E P YLT E PGDYG+D GLS P+
Sbjct: 34 SMRKTAAKPVSSSSPWYGPDRVKYLGP---FSGESPSYLTSEFPGDYGWDTAGLSADPET 90
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 149
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
+ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA L
Sbjct: 150 SLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 139/207 (67%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 64 GPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 120
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK GA + L+Y G + I + A+ A +++
Sbjct: 121 GALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVI 179
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 180 LMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 239
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 240 FFVQAIVTGKGPIENLADHLADPVNNN 266
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 156/252 (61%), Gaps = 18/252 (7%)
Query: 15 TLLLSSPLLSSPRRK-PPLLPSLSPS-------PSPPLTKSSP-SGPDRRIFLPEGLLDR 65
T+ LSSP + K P P L + + P++ SP GPDR +L
Sbjct: 5 TMALSSPAFAGKAVKLSPSSPELMGNGRVSMRKTTKPVSSGSPWYGPDRVKYLGP---FS 61
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++ G
Sbjct: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNG 121
Query: 126 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG-- 180
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 122 VKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPL 180
Query: 181 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 181 GEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
Query: 241 LAKHLSDPFANN 252
LA HL+DP NN
Sbjct: 241 LADHLADPVNNN 252
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 158/264 (59%), Gaps = 27/264 (10%)
Query: 10 LQVHQTLLLSSPLLSSPRRKPPLLPSL---------------SPSPSPPLTKSSP-SGPD 53
+ T+ LSSP L+ K L P++ S + S ++ SP GPD
Sbjct: 1 MATSSTMALSSPSLAGQAVK--LAPNVTELLAGDQGRVTMRKSVAKSKAVSSGSPWYGPD 58
Query: 54 RRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 113
R +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 59 RVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGAL 115
Query: 114 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVG 170
G + PE ++ G G EAVWFK GA + L+Y G + + A+ A +++L+G
Sbjct: 116 GCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVILMG 174
Query: 171 GAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+
Sbjct: 175 AVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 234
Query: 229 QAYVTGEGPVENLAKHLSDPFANN 252
QA VTG+GP+ENLA HL+DP NN
Sbjct: 235 QAIVTGKGPLENLADHLADPVNNN 258
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/208 (51%), Positives = 137/208 (65%), Gaps = 11/208 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL +++P YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARWAML
Sbjct: 47 GPDRVTFLGP----FTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAML 102
Query: 111 GAAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEI 166
G G +PEA K+ G N G E+VWFK G + L+Y G ++ ++ V +
Sbjct: 103 GTLGCFLPEALEKYSGINFG-ESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFIQA 161
Query: 167 VLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
+L+G E YR+ G + DK++PGG FDPLGL DPD A LKVKEIKNGRLAMF+M
Sbjct: 162 LLMGLVEGYRVGGGPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNGRLAMFSMF 221
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
G+F+QA VTG+GPVENL HL+DPF NN
Sbjct: 222 GYFIQAIVTGKGPVENLDAHLADPFVNN 249
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 124/259 (47%), Positives = 156/259 (60%), Gaps = 31/259 (11%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPL---------------TKSSP-SGPDRRIFL 58
T++LSSP L+ K L+PSP+ L + SP GPDR +L
Sbjct: 4 TMVLSSPSLAGKAVK------LAPSPASELMGNGRISMRKTGKSVSSGSPWYGPDRVKYL 57
Query: 59 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 118
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 58 GP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
Query: 119 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 175
E + G G EAVWFK GA + L+Y G + + A+ A ++VL+G E Y
Sbjct: 115 ELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGY 173
Query: 176 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
RI G ++ D L+PGG FDPLGLA DP+ F+ LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 174 RIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFSELKVKEIKNGRLAMFSMFGFFVQAIVT 233
Query: 234 GEGPVENLAKHLSDPFANN 252
G+GP+ENLA HL+DP NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/230 (51%), Positives = 146/230 (63%), Gaps = 15/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK P +S S SP G DR ++L G L E P YLTGE PGDYG+D GL
Sbjct: 33 RKTAAKPKVSASGSPWY------GSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGL 83
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L
Sbjct: 84 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGL 142
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G + + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP
Sbjct: 143 DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDP 202
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 203 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 252
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/249 (46%), Positives = 150/249 (60%), Gaps = 9/249 (3%)
Query: 9 QLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEI 68
L+ H L+ + + S + S + S GPDR ++L E
Sbjct: 18 SLKPHNNQLVGVGAGVHGEARVTMRKSSTKKVSASASTSPWYGPDRVLYLGP---FSGEP 74
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 134
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 183
G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G ++
Sbjct: 135 G-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEI 193
Query: 184 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243
D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 194 TDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 253
Query: 244 HLSDPFANN 252
HL+DP NN
Sbjct: 254 HLADPVNNN 262
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 118/230 (51%), Positives = 146/230 (63%), Gaps = 15/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK P +S S SP G DR ++L G L E P YLTGE PGDYG+D GL
Sbjct: 34 RKTAAKPKVSASGSPWY------GSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGL 84
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L
Sbjct: 85 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGL 143
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G + + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP
Sbjct: 144 DYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDP 203
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 204 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 253
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 145/222 (65%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + P++ SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 38 TATKAKPVSSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFA 94
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 95 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 153
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKV
Sbjct: 154 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 213
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 119/210 (56%), Positives = 138/210 (65%), Gaps = 14/210 (6%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 14 GPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 71
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA---- 164
GA G I PE K G G EAVWFK G+ + LNY G NLV A +IA
Sbjct: 72 GALGCITPELLAKNGIPFG-EAVWFKAGSQIFAEGGLNYLGNE---NLVHAQSIIATLAF 127
Query: 165 EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
++V++G AE YR G E D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 128 QVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 187
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
M GFF+QA VTG+GP++NL HL++P A N
Sbjct: 188 MFGFFVQAIVTGKGPIQNLDDHLANPTAVN 217
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 126/256 (49%), Positives = 154/256 (60%), Gaps = 24/256 (9%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLS------------PSPSPPLTKSSPS-GPDRRIFLPEG 61
T+ LSSP + K L PS S P + SP GPDR +L G
Sbjct: 4 TMALSSPSFAGKAVK--LAPSASGVLGQGRVTMRKAGGKPAASSGSPWYGPDRVKYL--G 59
Query: 62 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 121
L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 60 PLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118
Query: 122 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT 178
+ G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI
Sbjct: 119 ARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA 177
Query: 179 NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 236
G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+G
Sbjct: 178 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 237 PVENLAKHLSDPFANN 252
P+ENLA HL+DP NN
Sbjct: 238 PLENLADHLADPVNNN 253
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 151/253 (59%), Gaps = 21/253 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ R+ S S S SP GPDR ++L
Sbjct: 26 LLGVGAGVHGEARVTM------RKATTKKVSASASTSPWY------GPDRVLYLGP---F 70
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 71 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 130
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 131 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 189
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 190 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 249
Query: 240 NLAKHLSDPFANN 252
NL HL+DP NN
Sbjct: 250 NLTDHLADPVNNN 262
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 107/207 (51%), Positives = 137/207 (66%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 39 GPDRPQFLGP---FSGDTPSYLTGEFPGDYGWDTAGLSADPETFRRYRELELIHARWAML 95
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIV 167
GA G + PE +K+G E+VWFK G+ + L+Y G + + A++ ++V
Sbjct: 96 GALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVV 155
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M G
Sbjct: 156 LMGAIEAYRVNGGPLGEGLDPLYPGDKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFG 215
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+EN A+H++DPF+ N
Sbjct: 216 FFVQAVVTGKGPIENWAEHVADPFSVN 242
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 145/223 (65%), Gaps = 9/223 (4%)
Query: 35 SLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 94
++ P+ S GP+R +FL G E P YLTGE PGDYG+D GLS P+ F
Sbjct: 20 TVKPASKASTPDSFWYGPERPLFL--GAFT-GEPPSYLTGEFPGDYGWDTAGLSADPETF 76
Query: 95 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 153
+Y+ ELIHARWAMLGA G I PE +G G EAVWFK GA + L+Y G +
Sbjct: 77 KRYRELELIHARWAMLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYLGNSN 135
Query: 154 -IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLK 209
+ + A++ +++L+G E YR+ G E DKL+PGG FDPLGLA DPD F+ LK
Sbjct: 136 LVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFSELK 195
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
VKEIKNGRLAMF+M GFF+QA VTG+GP++NL+ HL++P NN
Sbjct: 196 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNN 238
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/208 (51%), Positives = 137/208 (65%), Gaps = 11/208 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL +++P YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARWAML
Sbjct: 47 GPDRVTFLGP----FTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAML 102
Query: 111 GAAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEI 166
G G +PEA K+ G N G E+VWFK G + L+Y G ++ ++ V +
Sbjct: 103 GTLGCFLPEALEKYSGINFG-ESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFIQA 161
Query: 167 VLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
+L+G E YR+ G + DK++PGG FDPLGL DPD A LKVKEIKNGRLAMF+M
Sbjct: 162 LLMGLVEGYRVGGGPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNGRLAMFSMF 221
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
G+F+QA VTG+GPVENL HL+DPF NN
Sbjct: 222 GYFIQAIVTGKGPVENLDAHLADPFVNN 249
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 149/245 (60%), Gaps = 9/245 (3%)
Query: 9 QLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEI 68
L+ H LL + + + + S P + S GPDR ++L E
Sbjct: 15 SLKPHTNQLLGVGAGVHGEARVTMRKATTKKVSVPASTSPWYGPDRVLYLGP---FSGEP 71
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 131
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 183
G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G ++
Sbjct: 132 G-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLREV 190
Query: 184 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243
D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 191 TDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 250
Query: 244 HLSDP 248
HL+DP
Sbjct: 251 HLADP 255
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/258 (45%), Positives = 154/258 (59%), Gaps = 10/258 (3%)
Query: 1 MSAVLLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSP-SGPDRRIFLP 59
M+A + L ++ P S R + + + + P++ SP GPDR +L
Sbjct: 1 MAAATMALSSSSFAGKAVNVPSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLG 60
Query: 60 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
E P YLTGE PGDYG+D GLS P F+K + E+IH RW MLGA G + PE
Sbjct: 61 P---FSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPE 117
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 176
F + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR
Sbjct: 118 LFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 176
Query: 177 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
+ G ++ D L+PGG FDPLGLA DP+ FA L+VKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 177 VAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 235 EGPVENLAKHLSDPFANN 252
+GP+ENLA HL+DP NN
Sbjct: 237 KGPLENLADHLADPVNNN 254
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 121/252 (48%), Positives = 155/252 (61%), Gaps = 18/252 (7%)
Query: 15 TLLLSSPLL---------SSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDR 65
T+ LSSP S+P + S+ + P + S GPDR ++L G L
Sbjct: 5 TMALSSPSFAGKAVKFSPSTPEIQGTGRVSMRKTTKPVPSGSPWYGPDRVLYL--GPLS- 61
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE + G
Sbjct: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNG 121
Query: 126 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG-- 180
G EAVWFK G+ + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 122 VKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPL 180
Query: 181 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 181 GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
Query: 241 LAKHLSDPFANN 252
LA HL+DP NN
Sbjct: 241 LADHLADPVNNN 252
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 139/210 (66%), Gaps = 9/210 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAML
Sbjct: 54 GPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAML 110
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 111 GALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 169
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 170 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 229
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
FF+QA VTG+GP+ENLA HLSDP NN +
Sbjct: 230 FFVQAIVTGKGPLENLADHLSDPVNNNAWS 259
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 120/249 (48%), Positives = 151/249 (60%), Gaps = 21/249 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ R+ +S SPSP GPDR ++L
Sbjct: 20 LLGVGAGVHGESRVTM------RKSATKKSVVSASPSPWY------GPDRVLYLGP---F 64
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 65 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 124
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 125 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 183
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 184 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 243
Query: 240 NLAKHLSDP 248
NLA HL+DP
Sbjct: 244 NLADHLADP 252
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 125/258 (48%), Positives = 152/258 (58%), Gaps = 26/258 (10%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLS--------------PSPSPPLTKSSPS-GPDRRIFLP 59
T+ LSSP L+ K L PS S P SP GPDR +L
Sbjct: 4 TMALSSPSLAGKAVK--LAPSASDVLGEGRVTMRKSTAKAKPAAASGSPWYGPDRVKYLG 61
Query: 60 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 62 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 176
+ G G EAVWFK GA + L+Y G I + A+ A +++L+G E YR
Sbjct: 119 LLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYR 177
Query: 177 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
I G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 178 IAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 235 EGPVENLAKHLSDPFANN 252
+GP+ENLA HL+DP NN
Sbjct: 238 KGPLENLADHLADPVNNN 255
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 142/218 (65%), Gaps = 9/218 (4%)
Query: 40 PSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
P P + S G DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 39 PKPAASGSPWYGADRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I
Sbjct: 96 LEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQ 154
Query: 158 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIK
Sbjct: 155 SILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIK 214
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF+M GFF+QA VTG+GPVENLA HL+DP NN
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPVENLADHLADPVNNN 252
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 140/207 (67%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 50 GPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +++
Sbjct: 107 GALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVI 165
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 166 LMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 FFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 123/253 (48%), Positives = 156/253 (61%), Gaps = 21/253 (8%)
Query: 15 TLLLSSPLLSSPRRKPPLLP----------SLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
T+ LSSP L+ K L P S+ + P + S GPDR +L
Sbjct: 5 TMALSSPSLAGKAVK--LNPFSEIMGNGCISMRKTTKPVPSGSPWYGPDRVKYLGP---F 59
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++
Sbjct: 60 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 119
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 120 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 178
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+MLGFF+QA VTG+GP+E
Sbjct: 179 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMLGFFVQAIVTGKGPLE 238
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP NN
Sbjct: 239 NLADHLADPVNNN 251
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 139/210 (66%), Gaps = 9/210 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAML
Sbjct: 52 GPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 109 GALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 168 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
FF+QA VTG+GP+ENLA HLSDP NN +
Sbjct: 228 FFVQAIVTGKGPLENLADHLSDPVNNNAWS 257
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 137/207 (66%), Gaps = 7/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G ++P YLTG+ PGDYG+D GLS P+ F Y+ ELIHARWAML
Sbjct: 29 GPDRAKWL--GPFSEGDVPSYLTGQFPGDYGWDTAGLSADPETFKAYREQELIHARWAML 86
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIV 167
GA G + PE +K+ E+VWFK G+ + L+Y G + + A++ ++V
Sbjct: 87 GALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVV 146
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D LHPG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 147 LMGLIEAYRVNGGPLGEGLDVLHPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 206
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
F++QA VTG+GP+EN A+H++DPF+ N
Sbjct: 207 FYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 114/223 (51%), Positives = 144/223 (64%), Gaps = 9/223 (4%)
Query: 35 SLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 94
++ P+ S GP+R +FL G E P YLTGE PGDYG+D GLS P+ F
Sbjct: 27 TVKPASKASTPDSFWYGPERPLFL--GAFT-GEPPSYLTGEFPGDYGWDTAGLSADPETF 83
Query: 95 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 153
+Y+ ELIHARWAMLGA G I PE +G G EAVWFK GA + L+Y G
Sbjct: 84 KRYRELELIHARWAMLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYLGNPN 142
Query: 154 -IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLK 209
+ + A++ +++L+G E YR+ G E DKL+PGG FDPLGLA DPD FA LK
Sbjct: 143 LVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELK 202
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
VKEIKNGRLAMF+M GFF+QA VTG+GP++NL+ HL++P NN
Sbjct: 203 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNN 245
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 157/254 (61%), Gaps = 19/254 (7%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLP--------SLSPSPSPPLTKSSP-SGPDRRIFLPEGLL 63
T+ LSSP L+ K P P ++ + S ++ SP GPDR +L
Sbjct: 4 STMALSSPTLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGP--- 60
Query: 64 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 123
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
Query: 124 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 180
G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 121 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 181 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 239 ENLAKHLSDPFANN 252
ENLA HL+DP NN
Sbjct: 240 ENLADHLADPVNNN 253
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 115/217 (52%), Positives = 140/217 (64%), Gaps = 10/217 (4%)
Query: 42 PPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
P + SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 43 PAASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 99
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 100 EVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQS 158
Query: 159 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKN
Sbjct: 159 ILAIWATQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 218
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 120/253 (47%), Positives = 156/253 (61%), Gaps = 18/253 (7%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSLS-------PSPSPPLTKSSP-SGPDRRIFLPEGLLD 64
T+ LSSP L+ K P P LS + S ++ SP GPDR +L
Sbjct: 4 STMALSSPSLAGQAIKLSPSTPELSGGRISMRKAASKSVSSGSPWYGPDRVKYLGP---F 60
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE +
Sbjct: 61 SGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARN 120
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK G+ + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 121 GVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 179
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF++ GFF+QA VTG+GP+E
Sbjct: 180 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSIFGFFVQAIVTGKGPLE 239
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 121/249 (48%), Positives = 153/249 (61%), Gaps = 21/249 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ + S +K + S SPSP GPDR ++L
Sbjct: 23 LLGVGAGVHGESRVT--MRKSATKKS--VASASPSPW--------YGPDRVLYLGP---F 67
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 68 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 128 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 187 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 240 NLAKHLSDP 248
NLA HL+DP
Sbjct: 247 NLADHLADP 255
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 135/207 (65%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 42 GPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 99
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G + PE K G G EAVWFK GA + L+Y G + N+V + +++
Sbjct: 100 GALGCLTPELLAKNGTQFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVI 158
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 159 LMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 218
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GPV+NL HLS+P NN
Sbjct: 219 FFVQAIVTGKGPVQNLDDHLSNPTVNN 245
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 124/262 (47%), Positives = 156/262 (59%), Gaps = 33/262 (12%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPL-------------TKSSPS-----GPDRR 55
T+ LSSP L+ K L+P+ S L TKS S GPDR
Sbjct: 4 STMALSSPSLAGKMVK------LAPTASEILGEGRITMRKTAGKTKSVSSDSPWYGPDRV 57
Query: 56 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 115
+L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G
Sbjct: 58 KYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFTKNRELEVIHCRWAMLGALGC 114
Query: 116 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGA 172
+ PE + G G EAVWFK GA + L+Y G + + A+ A +++L+G
Sbjct: 115 VFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAI 173
Query: 173 EYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA
Sbjct: 174 EGYRVAGGPLGEVTDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 233
Query: 231 YVTGEGPVENLAKHLSDPFANN 252
VTG+GP+ENLA HL+DP NN
Sbjct: 234 IVTGKGPLENLADHLADPVNNN 255
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 115/227 (50%), Positives = 143/227 (62%), Gaps = 15/227 (6%)
Query: 27 RRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFG 86
R+ +S SPSP GPDR ++L E P YLTGE PGDYG+D G
Sbjct: 39 RKSATKKSVVSASPSPWY------GPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAG 89
Query: 87 LSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNT 146
LS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 90 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGG 148
Query: 147 LNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKD 201
L+Y G I + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA D
Sbjct: 149 LDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADD 208
Query: 202 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
PD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 209 PDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 52 GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A ++V
Sbjct: 109 GALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVV 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 168 LMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 228 FFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 121/254 (47%), Positives = 156/254 (61%), Gaps = 20/254 (7%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSL----------SPSPSPPLTKSSPS-GPDRRIFLPEGLL 63
T+ LSSP + K L +L + + + + SSP G DR ++L G L
Sbjct: 5 TMSLSSPAFAGKAVKNVSLSALFGEARVTMRKTTAKAKQVASSSPWYGADRVLYL--GPL 62
Query: 64 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 123
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 63 S-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 121
Query: 124 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 180
G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 122 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180
Query: 181 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 181 PLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
Query: 239 ENLAKHLSDPFANN 252
ENLA H++DP NN
Sbjct: 241 ENLADHITDPVNNN 254
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 115/226 (50%), Positives = 144/226 (63%), Gaps = 12/226 (5%)
Query: 35 SLSPSPSPPLTKSSPS---GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 91
S+ S P SS S GPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 34 SMRKSAGKPKNVSSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADP 90
Query: 92 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 151
+ FSK + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 ETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
Query: 152 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 206
+ + A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 150 NPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 209
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 124/262 (47%), Positives = 156/262 (59%), Gaps = 31/262 (11%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPS-----GPDRRIFL 58
T+ LSSP + K LSPS S + KS+PS GPDR +L
Sbjct: 5 TMALSSPSFAGQAVK------LSPSASEITGNGRITMRKAVAKSAPSSSPWYGPDRVKYL 58
Query: 59 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 118
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 59 GP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115
Query: 119 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 175
E + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E Y
Sbjct: 116 ELLARNGVKFG-EAVWFKAGSQIFREGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 174
Query: 176 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
RI G ++ + L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 175 RIAGGPLGEVVNPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 234 GEGPVENLAKHLSDPFANNLLT 255
G+GP+ENLA HL+DP NN +
Sbjct: 235 GKGPLENLADHLADPVNNNAWS 256
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 121/249 (48%), Positives = 153/249 (61%), Gaps = 21/249 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ + S +K + S SPSP GPDR ++L
Sbjct: 23 LLGVGAGVHGESRVT--MRKSATKKS--VASASPSPW--------YGPDRVLYLGP---F 67
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 68 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 128 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 187 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 240 NLAKHLSDP 248
NLA HL+DP
Sbjct: 247 NLADHLADP 255
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 109/205 (53%), Positives = 137/205 (66%), Gaps = 9/205 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G ++P YLTGE PGDYG+D GLS P+ F Y+ ELIHARWAML
Sbjct: 14 GPDRPKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAML 71
Query: 111 GAAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEI 166
GA G + PE K+ G +CG E+VWFK G+ + L+Y G + + A++ ++
Sbjct: 72 GALGCVTPEILAKYAGVSCG-ESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQV 130
Query: 167 VLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
VL+G E YR+ G E D LHPG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 131 VLMGLIEAYRVNGGPLGEGLDPLHPGDKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 190
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPF 249
GF++QA VTG+GP+EN A H++DPF
Sbjct: 191 GFYVQAIVTGKGPIENWADHVADPF 215
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 144/223 (64%), Gaps = 10/223 (4%)
Query: 39 SPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 97
+ + PL+ SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 40 TKAKPLSSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 98 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 155
+ E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVH 155
Query: 156 INLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 212
+ A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVK
Sbjct: 156 AQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKH 215
Query: 213 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
IKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 216 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 136/207 (65%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 39 GPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G + PE +K G G EAVWFK GA + L+Y G + N+V + +++
Sbjct: 97 GALGCVTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVI 155
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 156 LMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 215
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL HL++P NN
Sbjct: 216 FFVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 140/207 (67%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 50 GPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +++
Sbjct: 107 GALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVI 165
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 166 LMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 FFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 134/207 (64%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 39 GPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G + PE K G G EAVWFK GA + LNY G I N+V + ++V
Sbjct: 97 GALGIVTPELLQKNGVQFG-EAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVV 155
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+ G
Sbjct: 156 LLGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSSFG 215
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP++NL HLS+P NN
Sbjct: 216 FFVQAIVTGKGPIQNLDDHLSNPGVNN 242
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 143/222 (64%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + P + SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 38 TATKAKPASSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFA 94
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 95 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 153
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 154 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKV 213
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 140/207 (67%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 50 GPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 106
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +++
Sbjct: 107 GALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVI 165
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 166 LMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 FFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 146/224 (65%), Gaps = 10/224 (4%)
Query: 35 SLSPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
S+ + S ++ SP GPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 33 SMRKTASKTVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 148
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
I + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA L
Sbjct: 149 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 208
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 156/254 (61%), Gaps = 19/254 (7%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLP--------SLSPSPSPPLTKSSP-SGPDRRIFLPEGLL 63
+ LSSP L+ K P P ++ + S ++ SP GPDR +L
Sbjct: 4 SAMALSSPTLAGQAVKLSPTAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGP--- 60
Query: 64 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 123
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
Query: 124 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 180
G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 121 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 181 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 239 ENLAKHLSDPFANN 252
ENLA HL+DP NN
Sbjct: 240 ENLADHLADPVNNN 253
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 136/207 (65%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 39 GPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G + PE +K G G EAVWFK GA + L+Y G + N+V + +++
Sbjct: 97 GALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVI 155
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 156 LMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 215
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL HL++P NN
Sbjct: 216 FFVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 152/257 (59%), Gaps = 13/257 (5%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPR----RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPE 60
+ G + + L+ P +S R + + P P + S G DR ++L
Sbjct: 1 MAGATMALTSRALVGKPATTSTRDVFGEGRITMRKTAAKPKPAASGSPWYGADRVLYLGP 60
Query: 61 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 120
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 61 ---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 117
Query: 121 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 177
+ G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+
Sbjct: 118 LARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRV 176
Query: 178 TNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct: 177 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 236 GPVENLAKHLSDPFANN 252
GP+ENLA HL+DP NN
Sbjct: 237 GPLENLADHLADPVNNN 253
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 142/219 (64%), Gaps = 14/219 (6%)
Query: 44 LTKSSPS-----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 98
+ KS+PS GPDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 23 VAKSAPSSSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNR 79
Query: 99 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 156
E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 80 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHA 138
Query: 157 NLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 213
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEI
Sbjct: 139 QSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEI 198
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 199 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 237
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 64 ETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 123
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRVAGGPLG 182
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EITDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
Query: 242 AKHLSDPFANN 252
HL+DP ANN
Sbjct: 243 NDHLADPVANN 253
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 202 bits (515), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 139/207 (67%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 64 GPDRVMYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 120
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK GA + L+Y G + I + A+ A +++
Sbjct: 121 GALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVI 179
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D ++PGG FDPLGLA DPD FA +KVKEIKNGRLAMF+M G
Sbjct: 180 LMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFG 239
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 240 FFVQAIVTGKGPIENLADHLADPVNNN 266
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 143/221 (64%), Gaps = 9/221 (4%)
Query: 37 SPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 96
+ P P + S G DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 36 AAKPKPAASGSPWYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAK 92
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--I 154
+ E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLV 151
Query: 155 PINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 211
+ A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVK
Sbjct: 152 HAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVK 211
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
EIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 212 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 147/222 (66%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + P++ SSP G DR ++L G L + P YLTGE PGDYG+D GLS P+ F+
Sbjct: 37 TAAKAKPVSSSSPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFA 93
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 94 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 152
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 153 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKV 212
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 213 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/258 (48%), Positives = 155/258 (60%), Gaps = 25/258 (9%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLS-----------PSPSPPLTKSSPS---GPDRRIFLP 59
T+ LSSP + K L PS S + S T SS S GPDR +L
Sbjct: 4 STMALSSPSFAGKAVK--LSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLG 61
Query: 60 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 62 P---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 176
+ G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR
Sbjct: 119 LLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177
Query: 177 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 178 VAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 235 EGPVENLAKHLSDPFANN 252
+GP+ENLA HL+DP NN
Sbjct: 238 KGPLENLADHLADPVNNN 255
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 137/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 52 GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK GA + L+Y G I + A+ A ++V
Sbjct: 109 GALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVV 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 168 LMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 228 FFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 123/259 (47%), Positives = 154/259 (59%), Gaps = 30/259 (11%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPL----------TKSSPSG-----PDRRIFL 58
T+ LSSP + K LSP+P + K +PSG PDR +L
Sbjct: 4 STMALSSPSFAGKAVK------LSPAPRELMGNGRVSMRRTAKPTPSGSPWYGPDRVKYL 57
Query: 59 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 118
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + P
Sbjct: 58 SP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 114
Query: 119 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 175
E + G G EAVWFK GA + L+Y G I + A+ A +++L+G E Y
Sbjct: 115 ELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGY 173
Query: 176 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
R+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 174 RVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 233
Query: 234 GEGPVENLAKHLSDPFANN 252
G+GP+ENLA HL+DP NN
Sbjct: 234 GKGPLENLADHLADPVNNN 252
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/251 (47%), Positives = 156/251 (62%), Gaps = 16/251 (6%)
Query: 14 QTLLLSSPLLS------SPRRKPPLLPSLSPSPSPPLTKSSP-SGPDRRIFLPEGLLDRS 66
++ LSSP L+ SP + S+ + + + SP GPDR +L
Sbjct: 4 SSMALSSPSLAGKAVKLSPSTQEVGRVSMRKTVTKQASSGSPWYGPDRVKYLGP---FSG 60
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 61 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 120
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK G+L+ L+Y G I + A+ A +++L+G E YRI G
Sbjct: 121 KFG-EAVWFKAGSLIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLG 179
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 180 EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 239
Query: 242 AKHLSDPFANN 252
A HLSDP +N
Sbjct: 240 ADHLSDPVNSN 250
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 147/222 (66%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + P++ SP G DR ++L G L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 37 TAAKAKPVSSGSPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFA 93
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + ELIH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 94 KNRELELIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 152
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 153 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKV 212
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 213 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/258 (48%), Positives = 153/258 (59%), Gaps = 25/258 (9%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSP--------------SPSPPLTKSSPSGPDRRIFLP 59
T+ LSSP L+ K L PS S P P + S GPDR +L
Sbjct: 4 STMALSSPSLAGKAVK--LAPSASELLGVGRVSMRKTGGRPKPVSSGSPWYGPDRVKYLG 61
Query: 60 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 62 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 176
+ G G EAVWFK GA + L+Y G + + A+ A +++L+G E YR
Sbjct: 119 LLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVLLMGAVEGYR 177
Query: 177 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
I G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 178 IAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 235 EGPVENLAKHLSDPFANN 252
+GP+ENLA HL+DP NN
Sbjct: 238 KGPLENLADHLADPVNNN 255
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/253 (49%), Positives = 154/253 (60%), Gaps = 18/253 (7%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSL--------SPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
T+ LSSP + K P P L + + P + S GPDR +L G L
Sbjct: 4 STMALSSPAFAGKAVKLSPSAPELMGNGRVNMRKTFNKPPSGSPWYGPDRVKYL--GPLS 61
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 62 -GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 121 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 179
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 180 LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP NN
Sbjct: 240 NLADHLADPVNNN 252
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 137/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 53 GPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 109
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK GA + L+Y G + + A+ A ++V
Sbjct: 110 GALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVV 168
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 169 LMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 229 FFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/223 (51%), Positives = 140/223 (62%), Gaps = 8/223 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +LP GLLD ++IP Y+ GE+ GDYGYDP GL K KY+ YE++H RWAML
Sbjct: 60 GPDRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGLGNK-GGVEKYRPYEVLHGRWAML 118
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLV 169
G G ++PE G AVW+ +GA+LLD TL + G P+ L AVI E+ +
Sbjct: 119 GVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALAVIFEVAVF 178
Query: 170 GGAEYYRITN----GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
E YR G L D L+PGG FDPLGLA DP + LKVKEIKNGRLAM A L
Sbjct: 179 FLIENYRYQQDGPWGTGL-DPLYPGGKYFDPLGLASDPSKADELKVKEIKNGRLAMMAFL 237
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
GF +Q +VT EGP N +KHL+DPF N LT++ +ER PTL
Sbjct: 238 GFVVQYFVTKEGPYANWSKHLADPFGYNFLTILGSGSERVPTL 280
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 136/207 (65%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 39 GPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G + PE +K G G EAVWFK GA + L+Y G + N+V + +++
Sbjct: 97 GALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVI 155
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 156 LMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 215
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL HL++P NN
Sbjct: 216 FFVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 137/210 (65%), Gaps = 9/210 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWAML
Sbjct: 53 GPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAML 109
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 110 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVI 168
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 169 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
FF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 229 FFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 136/207 (65%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 39 GPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G + PE +K G G EAVWFK GA + L+Y G + N+V + +++
Sbjct: 97 GALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVI 155
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 156 LMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 215
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL HL++P NN
Sbjct: 216 FFVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 155/254 (61%), Gaps = 19/254 (7%)
Query: 14 QTLLLSSPLLSSPRRK-----PPLLP----SLSPSPSPPLTKSSPS-GPDRRIFLPEGLL 63
T+ LSSP + K P L+ S+ + + ++ SP GPDR +L
Sbjct: 4 STMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKSVSSGSPWYGPDRVKYLGP--- 60
Query: 64 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 123
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 124 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 180
G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 121 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVAGG 179
Query: 181 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238
++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 239 ENLAKHLSDPFANN 252
ENLA HL+DP NN
Sbjct: 240 ENLADHLADPVNNN 253
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 146/222 (65%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + P++ SP G DR ++L G L + P YLTGE PGDYG+D GLS P+ F+
Sbjct: 58 TAAKAKPVSSGSPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFA 114
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 115 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 173
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 174 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKV 233
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 234 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 275
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/249 (48%), Positives = 153/249 (61%), Gaps = 21/249 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ + S +K S SPSP GPDR ++L
Sbjct: 23 LLGVGAGVHGESRVT--MRKSAAKKS--FASASPSPW--------YGPDRVLYLGP---F 67
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K
Sbjct: 68 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKN 127
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 128 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 187 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 240 NLAKHLSDP 248
NLA HL+DP
Sbjct: 247 NLADHLADP 255
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/252 (47%), Positives = 154/252 (61%), Gaps = 18/252 (7%)
Query: 15 TLLLSSPLL---------SSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDR 65
T+ LSSP S+P + S+ + P + S GPDR ++L G L
Sbjct: 5 TMALSSPSFAGKAVKFSPSTPEIQGTGRVSMRKTTKPVPSGSPWYGPDRVLYL--GPLS- 61
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE + G
Sbjct: 62 GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNG 121
Query: 126 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG-- 180
G EAVWFK G+ + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 122 VKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPL 180
Query: 181 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
++ D L+PGG FDPLG A DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 181 GEVTDPLYPGGSFDPLGFADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240
Query: 241 LAKHLSDPFANN 252
LA HL+DP NN
Sbjct: 241 LADHLADPVNNN 252
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/249 (45%), Positives = 150/249 (60%), Gaps = 9/249 (3%)
Query: 9 QLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEI 68
L+ H L+ + + S + S + S GPDR ++L E
Sbjct: 18 SLKPHNNQLVGVGAGVHGEARVTMRKSSTKKVSASASTSPWYGPDRVLYLGP---FSGEP 74
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +LTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G
Sbjct: 75 PSHLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 134
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 183
G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G ++
Sbjct: 135 G-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEI 193
Query: 184 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243
D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 194 TDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 253
Query: 244 HLSDPFANN 252
HL+DP NN
Sbjct: 254 HLADPVNNN 262
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/217 (52%), Positives = 142/217 (65%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P+ GPDR +L +IP YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPTSIWYGPDRPKYLGP---FSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 98 EVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 157 ILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 140/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSTPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH RWAMLGA G + PE +K G G EAVWFK GA + L+Y G +
Sbjct: 98 EVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 157 ILAIWACQVVLMGFVEGYRVGGGPLGEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLVDHLADPVANN 253
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 137/210 (65%), Gaps = 9/210 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWAML
Sbjct: 53 GPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAML 109
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 110 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVI 168
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 169 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
FF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 229 FFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 62 ETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGV 121
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 122 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLG 180
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 181 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 240
Query: 242 AKHLSDPFANN 252
+ HL+DP ANN
Sbjct: 241 SDHLADPVANN 251
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/253 (47%), Positives = 151/253 (59%), Gaps = 21/253 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ R+ S S S SP GPDR ++L
Sbjct: 26 LLGVGAGVHGEARVTM------RKATTKKVSASASTSPWY------GPDRVLYLGP---F 70
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 71 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 130
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 131 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 189
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRL MF+M GFF+QA VTG+GP+E
Sbjct: 190 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLTMFSMFGFFVQAIVTGKGPIE 249
Query: 240 NLAKHLSDPFANN 252
+LA HL+DP NN
Sbjct: 250 DLADHLADPVNNN 262
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 143/222 (64%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
S + + P + SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 38 SVAKAKPASSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFA 94
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 95 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 153
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 154 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKV 213
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 138/215 (64%), Gaps = 9/215 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G +P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAML
Sbjct: 33 GPDRAKWL--GPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFARYREIEVIHARWAML 90
Query: 111 GAAGFIIPEAFNKFGA-NCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEI 166
GA G + PE GA + G AVWFK GA + + LNY G I+ +V ++ ++
Sbjct: 91 GALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPSLIHAQSIVAVLLTQL 150
Query: 167 VLVGGAEYYRITNGLDLE---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
V++G AE YR +E D L+PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M
Sbjct: 151 VIMGAAEAYRYAGEGPVETSGDSLYPGGAFDPLGLADDPDTLAELKVKELKNGRLAMFSM 210
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
GFF+QA +TG+ P+ENLA HL+DP N V +
Sbjct: 211 FGFFVQALITGKSPLENLADHLADPSTANGFAVAT 245
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 143/216 (66%), Gaps = 10/216 (4%)
Query: 43 PLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 101
P++ SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 44 PVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 100
Query: 102 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 159
+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G + +
Sbjct: 101 VIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSI 159
Query: 160 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
A+ A ++VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNG
Sbjct: 160 LAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNG 219
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
RLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 220 RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 146/224 (65%), Gaps = 10/224 (4%)
Query: 35 SLSPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
++ S + ++ SP GPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 34 TMRKSATKSVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 149
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
I + A+ A ++VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA L
Sbjct: 150 SLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 209
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLTDPVNNN 253
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 141/217 (64%), Gaps = 10/217 (4%)
Query: 42 PPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
P SSP GPDR +L E P YL+GE PGDYG+D GLS P+ F+K +
Sbjct: 8 PKTVSSSPWYGPDRVKYLGP---FSGEAPSYLSGEFPGDYGWDTAGLSADPETFAKNREL 64
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G +
Sbjct: 65 EVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQS 123
Query: 159 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A +++L+G E YRI G ++ED L+PGG FDPLGLA DP+ FA LKVKEIKN
Sbjct: 124 ILAIWATQVILMGAVEGYRIAGGPLGEVEDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 183
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+ A VTG+GP+ENLA HL+DP NN
Sbjct: 184 GRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNN 220
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 145/224 (64%), Gaps = 10/224 (4%)
Query: 35 SLSPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
S+ + S ++ SP GPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 33 SMRKTASKTVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 148
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
I + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA L
Sbjct: 149 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 208
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/258 (47%), Positives = 154/258 (59%), Gaps = 25/258 (9%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSP--------------SPSPPLTKSSPSGPDRRIFLP 59
T+ LSSP L+ K L PS S P P + S GPDR +L
Sbjct: 4 STMALSSPSLAGQAIK--LAPSSSDLLGEGRVTMRKTAGRPKPVSSGSPWYGPDRVKYLG 61
Query: 60 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 62 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 118
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 176
+ G G EAVWFK GA + L+Y G + + A+ A +++L+G E YR
Sbjct: 119 LLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 177
Query: 177 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
I G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG
Sbjct: 178 IAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 237
Query: 235 EGPVENLAKHLSDPFANN 252
+GP+ENLA HL+DP NN
Sbjct: 238 KGPLENLADHLADPVNNN 255
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/223 (51%), Positives = 140/223 (62%), Gaps = 8/223 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +LP GLLD ++IP Y+ GE+ GDYGYDP GL K KY+ YE++H RWAML
Sbjct: 67 GPDRPKYLPTGLLDPADIPAYMNGELAGDYGYDPLGLGNK-GGVEKYRPYEVLHGRWAML 125
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLV 169
G G ++PE G AVW+ +GA+LLD TL + G P+ L AVI E+ +
Sbjct: 126 GVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALAVIFEVAVF 185
Query: 170 GGAEYYRITN----GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
E YR G L D L+PGG FDPLGLA DP + LKVKEIKNGRLAM A L
Sbjct: 186 FLIENYRYQQDGPWGTGL-DPLYPGGKYFDPLGLASDPSKADELKVKEIKNGRLAMMAFL 244
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
GF +Q +VT EGP N +KHL+DPF N LT++ +ER PTL
Sbjct: 245 GFVVQYFVTKEGPYANWSKHLADPFGYNFLTILGSGSERVPTL 287
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 144/216 (66%), Gaps = 10/216 (4%)
Query: 43 PLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 101
P++ SSP GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 6 PVSSSSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 62
Query: 102 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 159
+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + +
Sbjct: 63 VIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSI 121
Query: 160 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNG
Sbjct: 122 LAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNG 181
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
RLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 182 RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 217
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 143/217 (65%), Gaps = 14/217 (6%)
Query: 46 KSSPSG-----PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS PSG PDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 KSVPSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G +
Sbjct: 98 EVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KN
Sbjct: 157 ILAIWAVQVILMGAVEGYRIAGGPPGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 253
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 145/220 (65%), Gaps = 10/220 (4%)
Query: 39 SPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 97
+ + P++ SP G DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 36 AKAKPVSSGSPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 92
Query: 98 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 155
+ E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 93 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVH 151
Query: 156 INLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 212
+ A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 152 AQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKE 211
Query: 213 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
IKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 212 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 140/207 (67%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 49 GPDRVKYLGP---FSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 105
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 106 GALGCVFPELLSKNGIKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVI 164
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D ++PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 165 LMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFG 224
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 225 FFVQAIVTGKGPLENLSDHLADPVANN 251
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/260 (46%), Positives = 158/260 (60%), Gaps = 22/260 (8%)
Query: 4 VLLGLQLQVHQTLLLSSPLLSSPR---RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPE 60
L G QL+++ SS L + R RK ++ S SP GPDR +L
Sbjct: 15 TLAGKQLKLNP----SSQELGAARFTMRKSATTKKVASSGSPWY------GPDRVKYLGP 64
Query: 61 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 120
E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLGA G + PE
Sbjct: 65 ---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPEL 121
Query: 121 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 177
++ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI
Sbjct: 122 LSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRI 180
Query: 178 TNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+
Sbjct: 181 AGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 240
Query: 236 GPVENLAKHLSDPFANNLLT 255
GP+ENLA HL+DP NN +
Sbjct: 241 GPLENLADHLADPVNNNAWS 260
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 140/207 (67%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 51 GPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++V
Sbjct: 108 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVV 166
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 167 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 226
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/257 (45%), Positives = 155/257 (60%), Gaps = 21/257 (8%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDR------ 65
+HQT +S L ++PRR + + ++ S P + P DR
Sbjct: 6 LHQT---TSFLGTAPRRDDVVRRVGDSGGRITMRRTVKSAPQSIWYGP----DRPKYLGP 58
Query: 66 --SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 123
+ P YLTGE PGDYG+D GLS P+ F++ + ELIH+RWAMLGA G + PE +K
Sbjct: 59 FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWAMLGALGCVFPEILSK 118
Query: 124 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 180
G G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 119 NGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGG 177
Query: 181 LDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238
E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 178 PLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
Query: 239 ENLAKHLSDPFANNLLT 255
ENL H++DP ANN +
Sbjct: 238 ENLFDHVTDPVANNAWS 254
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 146/222 (65%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + P++ SP G DR ++L G L + P YLTGE PGDYG+D GLS P+ F+
Sbjct: 37 TAAKAKPVSSGSPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFA 93
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 94 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 152
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 153 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKV 212
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 213 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/258 (46%), Positives = 159/258 (61%), Gaps = 19/258 (7%)
Query: 10 LQVHQTLLLSSPLLS-SPRRKPPLLP------SLSPSPSPPLTKSSPS---GPDRRIFLP 59
+ T+ LSSP ++ +P + P ++ + P +S S G DR ++L
Sbjct: 1 MAAAATMALSSPAMAGTPVKASRAAPFGEGRITMRKTAGKPKVAASSSPWYGSDRVLYL- 59
Query: 60 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 60 -GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 176
+ G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR
Sbjct: 118 LLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 176
Query: 177 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 177 VAGGPLGEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 235 EGPVENLAKHLSDPFANN 252
+GP+ENLA HL+DP NN
Sbjct: 237 KGPLENLADHLADPVNNN 254
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 138/210 (65%), Gaps = 13/210 (6%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G ++P YLTGE PGDYG+D GLS P+ F Y+ ELIHARWAML
Sbjct: 29 GPDRAKWL--GPFFEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAML 86
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIV 167
GA G + PE +K+ E+VWFK G+ + L+Y G + + A++ ++V
Sbjct: 87 GALGCVTPEILSKYAGVSLGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVV 146
Query: 168 LVGGAEYYRIT-----NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
L+G E YR+ GLD+ LHPG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 147 LMGLIEAYRVNGGPLGKGLDV---LHPGEKFDPLGLADDPDTFAELKVKEIKNGRLAMFS 203
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
M GF++QA VTG+GP+EN A+H++DPF+ N
Sbjct: 204 MFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 142/220 (64%), Gaps = 10/220 (4%)
Query: 39 SPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 97
+ + P++ SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 40 TKAKPVSSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 98 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 155
+ E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVH 155
Query: 156 INLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 212
+ A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 156 AQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 215
Query: 213 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
IKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 216 IKNGRLAMFSMFGFFVQAIVTGKGPLENLVDHLADPVNNN 255
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 143/217 (65%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 40 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNREL 96
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 EVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLIHAQS 155
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 156 ILAIWACQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPDAFAELKVKELKN 215
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPVANN 252
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 145/222 (65%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ S + P++ SSP GP+R +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 38 TASKAKPVSSSSPWYGPNRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFA 94
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 95 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYLGNPSL 153
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YR+ ++ D L+PGG FDPLGLA+DP+ FA LKV
Sbjct: 154 VHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 213
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/249 (47%), Positives = 150/249 (60%), Gaps = 21/249 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ R+ S S S SP GPDR ++L
Sbjct: 23 LLGVGAGVHGEARVTM------RKATTKKVSASASTSPWY------GPDRVLYLGP---F 67
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 68 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 128 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 187 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 240 NLAKHLSDP 248
NLA HL+DP
Sbjct: 247 NLADHLADP 255
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 143/217 (65%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 40 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 EVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLIHAQS 155
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E DKL+PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 156 ILAIWASQVVLMGLIEGYRVGGGPLGEGLDKLYPGGAFDPLGLADDPEAFAELKVKELKN 215
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPVANN 252
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
G DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 52 GSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++V
Sbjct: 109 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVV 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 168 LMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 228 FFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 145/230 (63%), Gaps = 15/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK P ++ S SP GPDR +L E P YLTGE PGDYG+D GL
Sbjct: 31 RKTAAKPKVAASGSPWY------GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 81
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L
Sbjct: 82 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGL 140
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP
Sbjct: 141 DYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 200
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 201 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 250
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/254 (47%), Positives = 155/254 (61%), Gaps = 19/254 (7%)
Query: 14 QTLLLSSPLLSSPRRK-----PPLLP----SLSPSPSPPLTKSSP-SGPDRRIFLPEGLL 63
T+ LSSP + K P L+ S+ + + ++ SP GPDR +L
Sbjct: 4 STMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKNVSSGSPWYGPDRVKYLGP--- 60
Query: 64 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 123
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120
Query: 124 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 180
G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 121 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRVAGG 179
Query: 181 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238
++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 239 ENLAKHLSDPFANN 252
ENLA HL+DP NN
Sbjct: 240 ENLADHLADPVNNN 253
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 139/207 (67%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
G DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWAML
Sbjct: 52 GADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++V
Sbjct: 109 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVV 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 168 LMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA H++DP NN
Sbjct: 228 FFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 65 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 124
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 125 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLG 183
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
D+ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 184 DVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 243
Query: 242 AKHLSDPFANN 252
HL+DP ANN
Sbjct: 244 NDHLADPVANN 254
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/254 (46%), Positives = 156/254 (61%), Gaps = 19/254 (7%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLP--------SLSPSPSPPLTKSSP-SGPDRRIFLPEGLL 63
+ LSSP L+ K P P ++ + S ++ SP GPDR +L
Sbjct: 4 SAMALSSPTLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGP--- 60
Query: 64 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 123
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
Query: 124 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 180
G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 121 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 179
Query: 181 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 239 ENLAKHLSDPFANN 252
ENLA HL+DP NN
Sbjct: 240 ENLADHLADPVNNN 253
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/254 (47%), Positives = 155/254 (61%), Gaps = 20/254 (7%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSL----------SPSPSPPLTKSSP-SGPDRRIFLPEGLL 63
T+ LSSP + K L +L + + + + SSP G DR ++L G L
Sbjct: 5 TMSLSSPAFAGKAVKNVSLSALFGEARVTMRKTTAKAKQVASSSPWYGADRVLYL--GPL 62
Query: 64 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 123
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 63 S-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 121
Query: 124 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG 180
G G EAVWFK G+ + L+Y G + + A+ A + VL+G E YRI G
Sbjct: 122 NGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQAVLMGAVEGYRIAGG 180
Query: 181 --LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 181 PLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
Query: 239 ENLAKHLSDPFANN 252
ENLA H++DP NN
Sbjct: 241 ENLADHITDPVNNN 254
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 146/222 (65%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + L+ S+P G DR ++L G L E P YLTGE PGDYG+D GLS P+ FS
Sbjct: 37 TAAKAKQLSSSNPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFS 93
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 94 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 152
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 153 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKV 212
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 213 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 141/216 (65%), Gaps = 10/216 (4%)
Query: 43 PLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 101
P++ SP GPDR +L E P YLTGE GDYG+D GLS P+ F+K + E
Sbjct: 43 PVSSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELE 99
Query: 102 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 159
+IHARWAMLGA G + PE + G G EAVWFK G+ + L+Y G + +
Sbjct: 100 VIHARWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSI 158
Query: 160 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNG
Sbjct: 159 LAIWATQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG 218
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
RLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/245 (48%), Positives = 152/245 (62%), Gaps = 13/245 (5%)
Query: 18 LSSPLLSS--PRRKPPLLPSLSPSPSPPLT-KSSPSGPDRRIFLPEGLLDRSEIPEYLTG 74
L+ P L + RR+ + + PS T S+ GPDR +FL G L E P YLTG
Sbjct: 8 LAKPTLKTGVSRRQVQVNARRTVKPSKGSTPDSAWYGPDRPLFL--GSLS-GEPPSYLTG 64
Query: 75 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN-CGPEAV 133
E PGDYG+D G S P F++Y+ E+IHARWA+LGA G + PE + G G A+
Sbjct: 65 EFPGDYGWDTAGFSADPTTFARYRTIEVIHARWALLGALGIVTPEILAQNGVPFSGDAAI 124
Query: 134 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN---GLDLEDKL 187
WFK G+ + LNY G I + A +A +++++G AE +R G++ D L
Sbjct: 125 WFKAGSEIFKEGGLNYLGNPNLIHAQSILATLAVQVIVMGAAEGFRANGEAPGVEGLDTL 184
Query: 188 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 247
+PGGPFDPLGLA DPD FA LKVKEIKNGRLAMFA GFF+QA VTG+GP++NL HL+D
Sbjct: 185 YPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFACFGFFVQAIVTGKGPIQNLEDHLAD 244
Query: 248 PFANN 252
P NN
Sbjct: 245 PGVNN 249
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/258 (47%), Positives = 154/258 (59%), Gaps = 25/258 (9%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLS-----------PSPSPPLTKSSPS---GPDRRIFLP 59
T+ LSSP L+ K L P+ S + P T S S GPDR +L
Sbjct: 4 STMALSSPSLAGKAVK--LGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLG 61
Query: 60 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 62 P---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 176
+ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR
Sbjct: 119 LLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR 177
Query: 177 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
I G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 178 IAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 235 EGPVENLAKHLSDPFANN 252
+GP+ENLA HL+DP NN
Sbjct: 238 KGPLENLADHLADPVNNN 255
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 140/207 (67%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 58 GPDRVKYLGP---FSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 114
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 115 GALGCVFPELLSKNGIKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVI 173
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D ++PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 174 LMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFG 233
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 234 FFVQAIVTGKGPLENLSDHLADPVANN 260
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 143/227 (62%), Gaps = 15/227 (6%)
Query: 27 RRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFG 86
R+ S+S S SP GPDR ++L E P YLTGE PGDYG+D G
Sbjct: 39 RKATTKKVSVSASTSPWY------GPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAG 89
Query: 87 LSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNT 146
LS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 90 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGG 148
Query: 147 LNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKD 201
L+Y G + + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA D
Sbjct: 149 LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADD 208
Query: 202 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
PD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 209 PDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 137/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 52 GPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 109 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVI 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 168 LMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 228 FFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 137/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 53 GPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 109
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK GA + L+Y G + + A+ A +++
Sbjct: 110 GALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVI 168
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 169 LMGAIEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG 228
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 229 FFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 64 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGV 123
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLG 182
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
D+ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 DVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
Query: 242 AKHLSDPFANN 252
HL+DP ANN
Sbjct: 243 NDHLADPVANN 253
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 139/207 (67%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 19 GPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 75
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK GA + L+Y G + I + A+ A +++
Sbjct: 76 GALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVI 134
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 135 LMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFG 194
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA H++DP NN
Sbjct: 195 FFVQAIVTGKGPIENLADHIADPVNNN 221
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/249 (47%), Positives = 150/249 (60%), Gaps = 21/249 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ R+ S+S S SP GPDR ++L
Sbjct: 23 LLGVGAGVHGEARVTM------RKATTKKVSVSASTSPWY------GPDRVLYLGP---F 67
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 68 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 128 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
+ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 187 LGXVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 240 NLAKHLSDP 248
NLA HL+DP
Sbjct: 247 NLADHLADP 255
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 140/219 (63%), Gaps = 14/219 (6%)
Query: 44 LTKSSPS-----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 98
++KSS S G DR FL E P YL GE GDYG+D GLS P+ F++ +
Sbjct: 42 VSKSSGSDSIWYGADRPKFLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNR 98
Query: 99 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 156
E+IHARWAMLGA G + PE K G G EAVWFK GA + L+Y G +
Sbjct: 99 ELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHA 157
Query: 157 NLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 213
+ A+ A +++L+G E YR+ G D+ D ++PGG FDPLGLA DPD FA LKVKEI
Sbjct: 158 QSILAIWACQVILMGAVEGYRVAGGPLGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEI 217
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 256
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 66 ETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLG 184
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 242 AKHLSDPFANN 252
HL+DP ANN
Sbjct: 245 NDHLADPVANN 255
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/245 (48%), Positives = 152/245 (62%), Gaps = 18/245 (7%)
Query: 19 SSPLLSSPR---RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGE 75
+S LL + R RK ++PS SP GPDR +L E P YLTGE
Sbjct: 11 NSELLGNGRVSMRKTAAPKKVAPSGSPWY------GPDRVKYLGP---FSGEAPSYLTGE 61
Query: 76 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 135
PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWF
Sbjct: 62 FPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWF 120
Query: 136 KTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPG 190
K GA + L+Y G + + A+ A +++L+G E YRI G ++ D L+PG
Sbjct: 121 KAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPG 180
Query: 191 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 250
G FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA L+DP A
Sbjct: 181 GSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADRLADPVA 240
Query: 251 NNLLT 255
NN +
Sbjct: 241 NNAWS 245
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/210 (54%), Positives = 139/210 (66%), Gaps = 9/210 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IHARWAML
Sbjct: 50 GPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAML 106
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE +K G G EAVWFK G+ + L+Y G I + A+ A ++V
Sbjct: 107 GALGCIFPELLSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWATQVV 165
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 166 LMGFIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 225
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
FF+QA VTG+GP+ENL+ HL+DP ANN +
Sbjct: 226 FFVQAIVTGKGPLENLSDHLADPVANNAWS 255
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 142/217 (65%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCVFPEVLSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 157 ILAIWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP+ENL HLSDP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLSDPVANN 253
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 125/255 (49%), Positives = 160/255 (62%), Gaps = 23/255 (9%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLPSLSPSPSP----PLTKSSPS----GPDRRIFLPEGLL 63
+HQT +S L ++PRR L+ + S KS+P GPDR P+ L
Sbjct: 6 LHQT---TSFLGTAPRRDE-LVRRVGDSGGRITMRRTVKSAPQSIWYGPDR----PKYLG 57
Query: 64 DRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 122
SE P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE +
Sbjct: 58 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILS 117
Query: 123 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 179
K G G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+
Sbjct: 118 KNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG 176
Query: 180 GLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237
G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP
Sbjct: 177 GPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 236
Query: 238 VENLAKHLSDPFANN 252
+ENL H++DP ANN
Sbjct: 237 IENLFDHVADPVANN 251
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 140/207 (67%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 52 GPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++V
Sbjct: 109 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVV 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 168 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA H++DP NN
Sbjct: 228 FFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/189 (55%), Positives = 131/189 (69%), Gaps = 6/189 (3%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YLTGE PGDYG+D GLS P+ F+K + ELIHARWAMLGA G + PE K G
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGVKF 126
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 183
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ G ++
Sbjct: 127 G-EAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWAFQVVLMGAVEGYRVAGGPLGEV 185
Query: 184 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243
ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL+
Sbjct: 186 EDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSD 245
Query: 244 HLSDPFANN 252
HL+DP NN
Sbjct: 246 HLADPTVNN 254
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/207 (50%), Positives = 137/207 (66%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 39 GPDRPQFLGP---FSGDCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAML 95
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIV 167
GA G + PE +K+G E+VWFK G+ + L+Y G + + A++ ++V
Sbjct: 96 GALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVV 155
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M G
Sbjct: 156 LMGAIEAYRVNGGPLGEGLDPLYPGDKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFG 215
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
F++QA VTG+GP+EN A+H+++PF+ N
Sbjct: 216 FYVQAVVTGKGPIENWAEHVANPFSVN 242
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 141/221 (63%), Gaps = 9/221 (4%)
Query: 37 SPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 96
+ P P + S G DR ++L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 38 AAKPKPAASGSPWYGADRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 94
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--I 154
+ E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I
Sbjct: 95 NRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLI 153
Query: 155 PINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 211
+ A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVK
Sbjct: 154 HAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVK 213
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
EIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 214 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/213 (54%), Positives = 139/213 (65%), Gaps = 11/213 (5%)
Query: 46 KSSPSGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
KS GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH
Sbjct: 45 KSIWYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH 100
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV 162
RWAMLGA G + PE K G G EAVWFK GA + L+Y G I + A+
Sbjct: 101 GRWAMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAI 159
Query: 163 IA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 219
A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKNGRLA
Sbjct: 160 WACQVVLMGFVEGYRVGGGPLGEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLA 219
Query: 220 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
MF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 220 MFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 252
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 145/230 (63%), Gaps = 14/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK S++ S P GPDR ++L E P YLTGE PGDYG+D GL
Sbjct: 46 RKATGKKSVAASSDSPWY-----GPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L
Sbjct: 98 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGWL 156
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G + + A+ A +++L+G E YR+ G ++ D ++PGG FDPLGLA DP
Sbjct: 157 DYLGSPNLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDP 216
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
D FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 DAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/257 (47%), Positives = 156/257 (60%), Gaps = 20/257 (7%)
Query: 12 VHQTLLLSSPLLSS------PRRKPPLLP----SLSPSPSPPLTKSSP-SGPDRRIFLPE 60
+ T+ LSSP L+ P LL S+ + + P++ SP G DR +L
Sbjct: 1 MASTMALSSPSLAGKAVKLGPSAASELLGNGRISMRKTIAKPVSSGSPWYGADRVKYLGP 60
Query: 61 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 120
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 61 ---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 117
Query: 121 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 177
+ G G EAVWFK GA + L+Y G + + + A+ A ++VL+G E YRI
Sbjct: 118 LARNGVKFG-EAVWFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWATQVVLMGAVEGYRI 176
Query: 178 TNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct: 177 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 236 GPVENLAKHLSDPFANN 252
GP+ENLA L+DP NN
Sbjct: 237 GPLENLADPLADPVNNN 253
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 143/221 (64%), Gaps = 9/221 (4%)
Query: 37 SPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 96
+ P P + S G DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 36 AAKPKPAASGSPWYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAK 92
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--I 154
+ E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLV 151
Query: 155 PINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 211
+ A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVK
Sbjct: 152 HAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVK 211
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
EIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 212 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 252
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 135/207 (65%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 39 GPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G + PE K G G EAVWFK GA + L+Y G + N+V + +++
Sbjct: 97 GALGCLTPELLAKNGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVI 155
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 156 LMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 215
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GPV+NL HL++P NN
Sbjct: 216 FFVQAIVTGKGPVQNLDDHLANPTVNN 242
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 118/258 (45%), Positives = 158/258 (61%), Gaps = 16/258 (6%)
Query: 1 MSAVLLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSP-SGPDRRIFLP 59
+S+ G + ++ LSS + S+ R ++ S P + SP GPDR +L
Sbjct: 6 LSSTFTGKVVPLNAFTELSSSVRSNGRV------TMRKSGKPAASSGSPWYGPDRVKYLG 59
Query: 60 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
E P YL GE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 60 P---FSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 176
++ G G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR
Sbjct: 117 LLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYR 175
Query: 177 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
I G ++ D ++PGG FDPLGLA DP+ F+ LKVKE+KNGRLAMF+M GFF+QA VTG
Sbjct: 176 IAGGPLGEITDPIYPGGSFDPLGLADDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTG 235
Query: 235 EGPVENLAKHLSDPFANN 252
+GP+ENLA HL+DP NN
Sbjct: 236 KGPLENLADHLADPVNNN 253
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/225 (49%), Positives = 144/225 (64%), Gaps = 11/225 (4%)
Query: 37 SPSPSPPLTKSSPS--GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 94
S +T++S GPDR FL G +P YL GE PGDYG+D GLS P+ F
Sbjct: 22 SAKARKQVTRASVEFYGPDRAKFL--GPFSEGAVPSYLKGEFPGDYGWDTAGLSADPETF 79
Query: 95 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGA-NCGPEAVWFKTGALLLDGNTLNYFGKN 153
++Y+ ELIH+RWA+LGA G + PE + GA + G AVWFK GA + + LNY G
Sbjct: 80 ARYREIELIHSRWALLGALGILTPEYLQRSGAVDFGEAAVWFKAGASIFGDDGLNYLGNP 139
Query: 154 IPIN---LVFAVIAEIVLVGGAEYYRITNGLDLE---DKLHPGGPFDPLGLAKDPDQFAL 207
I+ +V ++A+IVLVG AE YR ++ DKL+PGG FDPLGL DP+ A
Sbjct: 140 QLIHAQSIVATLLAQIVLVGTAEAYRYAGEGPVDTSGDKLYPGGFFDPLGLGDDPEALAE 199
Query: 208 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
LKVKEIKNGRLA ++ GFF+QA VTG+GP+ENL HL+DP+ NN
Sbjct: 200 LKVKEIKNGRLAQVSVFGFFVQALVTGKGPLENLDDHLADPWNNN 244
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 146/233 (62%), Gaps = 15/233 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK ++ S SP GPDR +L E P YLTGE PGDYG+D GL
Sbjct: 1 RKSATTKKVASSGSPWY------GPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGL 51
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ FSK + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L
Sbjct: 52 SADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGL 110
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G + + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP
Sbjct: 111 DYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 170
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 171 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGV 125
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLG 184
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
D+ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 DVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 242 AKHLSDPFANN 252
HL+DP ANN
Sbjct: 245 NDHLADPVANN 255
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 144/230 (62%), Gaps = 14/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK S++ S P GPDR ++L E P YLTGE PGDYG+D GL
Sbjct: 46 RKATGKKSVAASSDSPWY-----GPDRVLYLGP---FSGEQPSYLTGEFPGDYGWDTAGL 97
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L
Sbjct: 98 SADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 156
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G + + A++A +++L+G E YR+ G ++ D ++PGG FDPLG A DP
Sbjct: 157 DYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDP 216
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
D FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 DAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 126/255 (49%), Positives = 159/255 (62%), Gaps = 23/255 (9%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLPSLSPSPSP----PLTKSSPS----GPDRRIFLPEGLL 63
+HQT +S L ++PRR L+ + S KS+P GPDR P+ L
Sbjct: 6 LHQT---TSFLGTAPRRDD-LVRRVGDSGGRITMRRTVKSAPQSIWYGPDR----PKYLG 57
Query: 64 DRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 122
SE P YLTGE PGDYG+D GLS P+ F+K + ELIH+RWAMLGA G + PE +
Sbjct: 58 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPEILS 117
Query: 123 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 179
K G G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+
Sbjct: 118 KNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG 176
Query: 180 GLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237
G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA V G+GP
Sbjct: 177 GPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVRGKGP 236
Query: 238 VENLAKHLSDPFANN 252
+ENL H++DP ANN
Sbjct: 237 IENLFDHVTDPVANN 251
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 143/222 (64%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + P + SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 4 TAAKAKPASSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFA 60
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 61 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 119
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 120 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKV 179
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 180 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 221
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 139/215 (64%), Gaps = 9/215 (4%)
Query: 43 PLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 102
P T S GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+
Sbjct: 55 PATSSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 111
Query: 103 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 160
IH+RWAMLGA G I PE + G G EAVWFK G+ + L+Y G I +
Sbjct: 112 IHSRWAMLGALGCIFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSIL 170
Query: 161 AVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 217
A+ A ++VL+G E YRI G ++ D L+PG FDPLGLA DP+ FA LKVKE+KNGR
Sbjct: 171 AIWAVQVVLMGAVEGYRIAGGPLGEITDPLYPGNSFDPLGLADDPEAFAELKVKELKNGR 230
Query: 218 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
LAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 231 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 265
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 141/221 (63%), Gaps = 9/221 (4%)
Query: 37 SPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 96
+ P P + S GPDR +L E P YLTGE GDYG+D GLS P+ F+K
Sbjct: 7 AAKPKPAASGSPWYGPDRVKYLGP---FSGEAPSYLTGEFAGDYGWDTAGLSADPETFAK 63
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--I 154
+ E+IHARWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 64 NRELEVIHARWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLV 122
Query: 155 PINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 211
+ A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVK
Sbjct: 123 HAQSILAIWATQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVK 182
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
EIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 183 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 223
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 143/217 (65%), Gaps = 10/217 (4%)
Query: 42 PPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
P + SP GPDR ++L G L E P YLTGE GDYG+D GLS P+ F+K +
Sbjct: 41 PKVASGSPWYGPDRVLYL--GPLS-GEPPSYLTGEFAGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCVFPELLARNGVQFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 157 ILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/222 (50%), Positives = 147/222 (66%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + P++ SP G DR ++L G L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 4 TAAKAKPVSSGSPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFA 60
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + ELIH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 61 KNRELELIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 119
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 120 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKV 179
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 180 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 221
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 135/207 (65%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 39 GPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G + PE K G G EAVWFK GA + L+Y G + N+V + +++
Sbjct: 97 GALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVI 155
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 156 LMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 215
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GPV+NL HL++P NN
Sbjct: 216 FFVQAIVTGKGPVQNLDDHLANPGVNN 242
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 107/207 (51%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 49 GPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 105
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 106 GALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 164
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 165 LMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 224
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 145/230 (63%), Gaps = 14/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK S++ S P GPDR ++L E P YLTGE PGDYG+D GL
Sbjct: 46 RKATGKKSVAASSDSPWY-----GPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L
Sbjct: 98 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 156
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G + + A+ A +++L+G E YR+ G ++ D ++PGG FDPLGLA DP
Sbjct: 157 DYLGSPNLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDP 216
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
D FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 DAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 135/207 (65%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 38 GPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 95
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G + PE K G G EAVWFK GA + L+Y G + N+V + +++
Sbjct: 96 GALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVI 154
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 155 LMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 214
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GPV+NL HL++P NN
Sbjct: 215 FFVQAIVTGKGPVQNLDDHLANPTVNN 241
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 120/249 (48%), Positives = 153/249 (61%), Gaps = 21/249 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ + S +K S SPSP GPDR ++L
Sbjct: 23 LLGVGAGVHGESRVT--MRKSAAKKS--FASASPSPW--------YGPDRVLYLGP---F 67
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K
Sbjct: 68 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKN 127
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L++ G I + A+ A +++L+G E YRI G
Sbjct: 128 GVKFG-EAVWFKAGAQIFSEGGLDHLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 187 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 240 NLAKHLSDP 248
NLA HL+DP
Sbjct: 247 NLADHLADP 255
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 52 GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 109 GALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 168 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 228 FFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 143/221 (64%), Gaps = 9/221 (4%)
Query: 37 SPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 96
+ P P + S G DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 31 AAKPKPAASGSPWYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAK 87
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--I 154
+ E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 88 NRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLV 146
Query: 155 PINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 211
+ A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVK
Sbjct: 147 HAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVK 206
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
EIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 207 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 247
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
G DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWAML
Sbjct: 52 GADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++V
Sbjct: 109 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVV 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 168 LMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA H++DP NN
Sbjct: 228 FFVQAIVTGKGPLENLADHIADPINNN 254
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 123/258 (47%), Positives = 154/258 (59%), Gaps = 25/258 (9%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSP-------------SPSPPLTKSSP-SGPDRRIFLP 59
T+ LSSP L+ K L PS S + P++ SP G DR +L
Sbjct: 4 STMALSSPSLAGKALK--LAPSASDLLGEGRVTMRKTGGRAKPVSSGSPWYGTDRVKYLG 61
Query: 60 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE
Sbjct: 62 P---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 176
+ G G EAVWFK GA + L+Y G + + A+ A +++L+G E YR
Sbjct: 119 LLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVILMGAVEGYR 177
Query: 177 ITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
I G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 178 IGGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 237
Query: 235 EGPVENLAKHLSDPFANN 252
+GP+ENLA HL+DP NN
Sbjct: 238 KGPLENLADHLADPVNNN 255
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 139/210 (66%), Gaps = 9/210 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAML
Sbjct: 18 GPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAML 74
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 75 GALGSVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 133
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 134 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 193
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
FF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 194 FFVQAIVTGKGPLENLADHLADPVNNNAWS 223
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 134/207 (64%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 30 GPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARWAML 87
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G + PE K G G EAVWFK GA + LNY G I N+V + +++
Sbjct: 88 GALGIVTPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVI 146
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+ G
Sbjct: 147 LLGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSSFG 206
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP++NL HLS+P NN
Sbjct: 207 FFVQAIVTGKGPIQNLDDHLSNPGVNN 233
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 140/219 (63%), Gaps = 14/219 (6%)
Query: 44 LTKSSPS-----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 98
++KSS S G DR FL E P YL GE GDYG+D GLS P+ F++ +
Sbjct: 41 VSKSSGSDSIWYGADRPKFLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNR 97
Query: 99 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 156
E+IHARWAMLGA G + PE K G G EAVWFK GA + L+Y G +
Sbjct: 98 ELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHA 156
Query: 157 NLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 213
+ A+ A +++L+G E YR+ G D+ D ++PGG FDPLGLA DPD FA LKVKEI
Sbjct: 157 QSILAIWACQVILMGAVEGYRVAGGPLGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEI 216
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 142/216 (65%), Gaps = 10/216 (4%)
Query: 43 PLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 101
P++ SP GPDR +L G + P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 44 PVSSGSPWYGPDRVKYL--GPFSGNS-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 100
Query: 102 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 159
+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + +
Sbjct: 101 VIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSI 159
Query: 160 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNG
Sbjct: 160 LAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG 219
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
RLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 220 RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 146/224 (65%), Gaps = 10/224 (4%)
Query: 35 SLSPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
++ + S ++ SP GPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 24 TMRKTASKSVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPET 80
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 81 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 139
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
+ + A+ A ++VL+G E YRI G ++ D ++PGG FDPLGLA DP+ FA L
Sbjct: 140 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 199
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 200 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 243
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 142/219 (64%), Gaps = 10/219 (4%)
Query: 43 PLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 101
P++ SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 43 PVSSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 99
Query: 102 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 159
+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + +
Sbjct: 100 VIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSI 158
Query: 160 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
A+ A ++VL+G E YR+ ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNG
Sbjct: 159 LAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNG 218
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
RLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 219 RLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWS 257
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 142/220 (64%), Gaps = 10/220 (4%)
Query: 39 SPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 97
+ + P++ SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 40 TKAKPVSSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKN 96
Query: 98 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 155
+ E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVH 155
Query: 156 INLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 212
+ A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 156 AQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 215
Query: 213 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
IKNGRLAMF+M GFF+QA VTG+GP++NL HL+DP NN
Sbjct: 216 IKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNN 255
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 52 GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 109 GALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 168 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 228 FFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/259 (47%), Positives = 153/259 (59%), Gaps = 31/259 (11%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPS-----------PPLTKSSPS-----GPDRRIFL 58
T+ LSSP + K LSPS S + KS+PS GPDR +L
Sbjct: 5 TMALSSPSFAGQAVK------LSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYL 58
Query: 59 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 118
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G P
Sbjct: 59 GP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCDFP 115
Query: 119 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 175
E + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G E Y
Sbjct: 116 ELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 174
Query: 176 RITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
RI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+ GFF+QA VT
Sbjct: 175 RIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSTFGFFVQAIVT 234
Query: 234 GEGPVENLAKHLSDPFANN 252
G+GP+ENLA HL+DP NN
Sbjct: 235 GKGPLENLADHLADPVNNN 253
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 143/223 (64%), Gaps = 10/223 (4%)
Query: 39 SPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 97
+ + P++ SP GPDR +L E P YLTGE PGDYG+D LS P+ F+K
Sbjct: 40 TKAKPVSSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAELSADPETFAKN 96
Query: 98 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 155
+ E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 97 RELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVH 155
Query: 156 INLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 212
+ A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 156 AQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 215
Query: 213 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
IKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 216 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 258
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 145/224 (64%), Gaps = 10/224 (4%)
Query: 35 SLSPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
S+ + S +T SP GPDR +L E P Y TGE PGDYG+D GLS P+
Sbjct: 33 SMRKTASKTVTSGSPWYGPDRVKYLGP---FSGEPPSYRTGEFPGDYGWDTAGLSADPET 89
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 90 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 148
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
I + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA L
Sbjct: 149 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 208
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KVKE+K+GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 KVKELKHGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
G DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWAML
Sbjct: 52 GADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++V
Sbjct: 109 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSFVHAQSILAIWACQVV 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 168 LMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA H++DP NN
Sbjct: 228 FFVQAIVTGKGPLENLADHIADPINNN 254
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 140/223 (62%), Gaps = 10/223 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+ E+IHARWAML
Sbjct: 136 GPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAML 192
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE G G AVW+K GA + + LNY G I+ +V ++ +
Sbjct: 193 GALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 252
Query: 168 LVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
++G E YR G+ D D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AM
Sbjct: 253 IMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAM 312
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 266
LGF++Q VT GPVENL HL+DP ANN+ + SG A A T
Sbjct: 313 LGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGFAMFAAT 355
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 137/218 (62%), Gaps = 10/218 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+ E+IHARWAML
Sbjct: 597 GPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAML 653
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE G G AVW+K GA + + LNY G I+ +V ++ +
Sbjct: 654 GALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 713
Query: 168 LVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
++G E YR G+ D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AM
Sbjct: 714 IMGAVEAYRYGGGVGDSGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAM 773
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 261
LGF++Q VT GPVENL HL+DP ANN+ + SG A
Sbjct: 774 LGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGFA 811
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 143/234 (61%), Gaps = 14/234 (5%)
Query: 36 LSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+S P PL K GPDR +L G +PEYLTGE+PGDYG+D GL P +
Sbjct: 826 VSKDPFSPLNKLY--GPDRVKWL-GGF--TGFVPEYLTGELPGDYGWDTAGLGADPAKLA 880
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP 155
+Y+ ++IH RWAMLG G PE N++G E VWFK GA + + LNY G+
Sbjct: 881 RYRVAQVIHGRWAMLGVLGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGL 940
Query: 156 IN---LVFAVIAEIVLVGGAEYYRITN-----GLDLEDKLHPGGPFDPLGLAKDPDQFAL 207
I+ +V ++ +VL+G E YR G DL D L+PGGPFDPLGLA DP+ F
Sbjct: 941 IHAQSVVLTFLSTLVLMGAVEAYRSAGSVGDFGADL-DPLYPGGPFDPLGLADDPEAFLE 999
Query: 208 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 261
LKVKE+KNGRLAM A+ GFF+Q +TG+GPVEN HL+DPF NN+ + G A
Sbjct: 1000 LKVKEVKNGRLAMVAIFGFFVQGILTGKGPVENWVDHLTDPFVNNIFQLTPGFA 1053
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/214 (48%), Positives = 133/214 (62%), Gaps = 10/214 (4%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T S GP+R +L G L +PEYL GE GDYG+D GL+ P F +Y+ EL +
Sbjct: 355 TGSKWYGPNRPKWL--GPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQN 412
Query: 105 ARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVF 160
RWAMLG G + PE N FG PE VWFKTGA +L+G +++Y I NL+
Sbjct: 413 GRWAMLGVLGCLAPEVLSNVFGVPY-PEPVWFKTGATILNGGSIDYLANPKLIHASNLLL 471
Query: 161 AVIAEIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 217
++ E+V AE +R L +DK +PGG FDPLGL+KDP FA KVKE+KNGR
Sbjct: 472 TLVLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNGR 531
Query: 218 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 251
LAM AMLG F+QA VTG+ P+ENL+ HL++P N
Sbjct: 532 LAMLAMLGLFVQAGVTGQSPLENLSAHLANPGVN 565
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 77/115 (66%), Gaps = 6/115 (5%)
Query: 157 NLVFAVIAEIVLVGGAEYYRITN-----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 211
++V ++ +VL+G E YR G DL D L+PGGPFDPLGLA DP+ F LKVK
Sbjct: 5 SVVLTFLSTLVLMGAVEAYRSAGSVGDFGADL-DPLYPGGPFDPLGLADDPEAFLELKVK 63
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 266
E+KNGRLAM A+ GF +Q +TG+GPVEN HL+DPF NNL + SG A A +
Sbjct: 64 EVKNGRLAMVAIFGFSVQGILTGKGPVENWVDHLTDPFENNLFQLTSGFAMLATS 118
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 144/230 (62%), Gaps = 14/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK S++ S P GPDR ++L E P YLTGE PGDYG+D GL
Sbjct: 46 RKATGKKSVAASSDSPWY-----GPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L
Sbjct: 98 SADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 156
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G I + A++A +++L+G E YR+ G ++ D ++PGG FDPLG A DP
Sbjct: 157 DYLGSPNLIHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDP 216
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
D FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 DAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 146/230 (63%), Gaps = 15/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK P ++ S SP GPDR +L E P YLTGE PGDYG+D GL
Sbjct: 31 RKTVGKPKVAASGSPWY------GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 81
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L
Sbjct: 82 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGL 140
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP
Sbjct: 141 DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 200
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 201 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/208 (53%), Positives = 138/208 (66%), Gaps = 10/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R ++L G L S P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 55 GPERALWL--GPLSGS-APSYLTGEFPGDYGWDSAGLSSDPETFKRYRELELIHARWAML 111
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K G E VWFK GA + L+Y G + + A +A +++
Sbjct: 112 GALGCVTPELLAKNGTPIA-EPVWFKAGAQIFQEGGLDYLGNPGLVHAQSILATLACQVI 170
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E +R+ G E DKLHPGGP FDPL LA+DPD FA LKVKEIKNGRLAMF+M
Sbjct: 171 LMGAIEGFRVNGGPAGEGLDKLHPGGPWFDPLALAEDPDAFAELKVKEIKNGRLAMFSMF 230
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL++P NN
Sbjct: 231 GFFVQAIVTGQGPIENLESHLANPGVNN 258
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 52 GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 109 GALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 168 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 228 FFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 117/255 (45%), Positives = 156/255 (61%), Gaps = 22/255 (8%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLS-----------PSPSPPLTKSSPSGPDRRIFLPEGL 62
T+ LSSP L+ K + PS S + P++ S GPDR +L
Sbjct: 4 STMALSSPALAGKAVK--VAPSSSELFGNGRVSMRKTVKAPVSDSPWYGPDRVKYLGP-- 59
Query: 63 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 122
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 60 -FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 118
Query: 123 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 179
+ G G EAVWFK G+ + L+Y G + + ++ A +++L+G E YR+
Sbjct: 119 RNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG 177
Query: 180 G--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237
G ++ D L+PGG FDPLGLA+DP++ A LKVKE+KNGRLAMF+M GFF+QA VTG+GP
Sbjct: 178 GPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 237
Query: 238 VENLAKHLSDPFANN 252
+ENLA HL+DP NN
Sbjct: 238 LENLADHLADPVNNN 252
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 140/207 (67%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 88 GPDRVLYL--GPLSGAP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 144
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++V
Sbjct: 145 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVV 203
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 204 LMGAIEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 263
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 264 FFVQAIVTGKGPLENLADHLADPVNNN 290
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 67 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 126
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 127 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLG 185
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 186 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
Query: 242 AKHLSDPFANN 252
HL+DP ANN
Sbjct: 246 NDHLADPVANN 256
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
G DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 51 GADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++V
Sbjct: 108 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWACQVV 166
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 167 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFG 226
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 145/222 (65%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + ++ SSP G DR ++L G L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 32 TAAKAKQVSSSSPWYGSDRVLYL--GSLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFA 88
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWF G+ + L+Y G
Sbjct: 89 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFMAGSQIFSEGGLDYLGNPSL 147
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 148 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKV 207
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 208 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 249
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 107/191 (56%), Positives = 132/191 (69%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G I PE +K G
Sbjct: 63 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGV 122
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 183
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 123 QFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLG 181
Query: 184 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 182 EGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 241
Query: 242 AKHLSDPFANN 252
A H++DP ANN
Sbjct: 242 ADHIADPVANN 252
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 115/217 (52%), Positives = 140/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR FL + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE K G G E+VWFK GA + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCVFPEILAKNGVKFG-ESVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWASQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GPVENL HL+DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPVENLLDHLADPVANN 253
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/189 (54%), Positives = 130/189 (68%), Gaps = 6/189 (3%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 61 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 120
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 183
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ G ++
Sbjct: 121 G-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEI 179
Query: 184 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243
D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 180 VDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 239
Query: 244 HLSDPFANN 252
HL+DP NN
Sbjct: 240 HLADPVNNN 248
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 146/224 (65%), Gaps = 10/224 (4%)
Query: 35 SLSPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
S+ + + ++ SP GPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 32 SMRKTVTKQVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPET 88
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 89 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 147
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
I + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA L
Sbjct: 148 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 207
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 208 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLG 184
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 242 AKHLSDPFANN 252
HL+DP ANN
Sbjct: 245 NDHLADPVANN 255
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
G DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWAML
Sbjct: 52 GADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + + L+Y G + + A+ A ++V
Sbjct: 109 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFNEGGLDYLGNPSLVHAQSILAIWACQVV 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 168 LMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL H++DP NN
Sbjct: 228 FFVQAIVTGKGPLENLGDHITDPVNNN 254
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 144/230 (62%), Gaps = 14/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK S++ S P GPDR ++L E P YLTGE PGDYG+D GL
Sbjct: 46 RKATGKKSVAASSDSPWY-----GPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L
Sbjct: 98 SADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 156
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G + + A++A +++L+G E YR+ G ++ D ++PGG FDPLG A DP
Sbjct: 157 DYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDP 216
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
D FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 DAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 142/222 (63%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + P + SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 38 TATKAKPASSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFA 94
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 95 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 153
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLG A DP+ FA LKV
Sbjct: 154 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGPADDPEAFAELKV 213
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 143/222 (64%), Gaps = 10/222 (4%)
Query: 42 PPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
P SP GPDR ++L G L E P YLTGE GDYG+D GLS P+ F+K +
Sbjct: 41 PKAASGSPWYGPDRVLYL--GPLS-GEPPSYLTGEFAGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 157 ILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN +
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYV 258
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 144/230 (62%), Gaps = 14/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK S++ S P GPDR ++L E P YLTGE PGDYG+D GL
Sbjct: 46 RKATGKKSVAASSDSPWY-----GPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L
Sbjct: 98 SADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 156
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G + + A++A +++L+G E YR+ G ++ D ++PGG FDPLG A DP
Sbjct: 157 DYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDP 216
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
D FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 DAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 107/207 (51%), Positives = 137/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 64 GPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAML 120
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK GA + L+Y G + + A++A +++
Sbjct: 121 GALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVI 179
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D ++PGG FDPLG A DPD FA LKVKE+KNGRLAMF+M G
Sbjct: 180 LMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSMFG 239
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 240 FFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 144/230 (62%), Gaps = 14/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK S++ S P GPDR ++L E P YLTGE PGDYG+D GL
Sbjct: 46 RKATGKKSVAASSDSPWY-----GPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L
Sbjct: 98 SADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 156
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G + + A++A +++L+G E YR+ G ++ D ++PGG FDPLG A DP
Sbjct: 157 DYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDP 216
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
D FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 DAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLG 184
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 242 AKHLSDPFANN 252
HL+DP ANN
Sbjct: 245 NDHLADPVANN 255
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 103/193 (53%), Positives = 131/193 (67%), Gaps = 7/193 (3%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
S P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAMLGA G + PE ++ G
Sbjct: 9 SATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLSQNG 68
Query: 126 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITN--- 179
E VW+K GA +L L+Y GK ++ +V + +++L+G AE YR
Sbjct: 69 FTF-QEPVWWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEAYRAAGSAP 127
Query: 180 GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
G+D DKL+PGGPFDPL A DPD A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 128 GVDGLDKLYPGGPFDPLEFASDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 187
Query: 240 NLAKHLSDPFANN 252
NL HL+ P+ANN
Sbjct: 188 NLNDHLASPYANN 200
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 145/230 (63%), Gaps = 15/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK P ++ S SP GPDR +L E P YLTGE PGDYG+D GL
Sbjct: 31 RKTVGKPKVAASGSPWY------GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 81
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L
Sbjct: 82 SADPKTFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGL 140
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP
Sbjct: 141 DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 200
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 201 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 140/207 (67%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 51 GPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++V
Sbjct: 108 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVV 166
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA +KVKE+KNGRLAMF+M G
Sbjct: 167 LMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFG 226
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 62 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGV 121
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 122 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLG 180
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 181 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 240
Query: 242 AKHLSDPFANN 252
HL+DP ANN
Sbjct: 241 NDHLADPVANN 251
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 135/207 (65%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 39 GPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G + PE K G G EAVWFK GA + L+Y G + N+V + +++
Sbjct: 97 GALGCLTPELLAKNGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVI 155
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKE+KNGRLAMF+M G
Sbjct: 156 LMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKELKNGRLAMFSMFG 215
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GPV+NL HL++P NN
Sbjct: 216 FFVQAIVTGKGPVQNLDDHLANPTVNN 242
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 118/249 (47%), Positives = 150/249 (60%), Gaps = 21/249 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ R+ S+S S SP GPDR ++L
Sbjct: 23 LLGVGAGVHGEARVTM------RKAATKKVSVSASTSPWY------GPDRVLYLGP---F 67
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 68 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 128 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPL LA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 187 LGEVTDPIYPGGSFDPLRLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 240 NLAKHLSDP 248
NLA HL+DP
Sbjct: 247 NLADHLADP 255
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 143/218 (65%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 40 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNREL 96
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G +
Sbjct: 97 EVIHSRWAMLGALGCVFPELLSKNGVQFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQS 155
Query: 159 VFAVIA-EIVLVGGAEYYRITNG---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YR+ G DL DKL+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 156 ILAIWACQVVLMGFVEGYRVGGGPLGEDL-DKLYPGGAFDPLGLADDPEAFAELKVKELK 214
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF+M GFF+QA VTG+GPVENL H++DP ANN
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPVENLVDHIADPVANN 252
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 140/207 (67%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 51 GPDRVLYL--GPLSGAP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++V
Sbjct: 108 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVV 166
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 167 LMGAIEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 226
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 142/215 (66%), Gaps = 10/215 (4%)
Query: 44 LTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 102
++ SSP G DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+
Sbjct: 44 VSSSSPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 103 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 160
IH RWAMLGA G I PE + G G EAVWFK G+ + L+Y G + +
Sbjct: 101 IHCRWAMLGALGSIFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 159
Query: 161 AVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 217
A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGR
Sbjct: 160 AIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 219
Query: 218 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
LAMF+M GFF+QA VTG+GP+ENLA H+ DP NN
Sbjct: 220 LAMFSMFGFFVQAIVTGKGPLENLADHIVDPVNNN 254
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGV 125
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLG 184
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 242 AKHLSDPFANN 252
HL+DP ANN
Sbjct: 245 NDHLADPVANN 255
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/217 (52%), Positives = 140/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSP----SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 19 VKSAPPSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 75
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH RWAMLGA G + PE +K G G EAVWFK GA + L+Y G I
Sbjct: 76 EVIHCRWAMLGALGCVFPEVLSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 134
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 135 ILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKN 194
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 195 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 231
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 140/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSTPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE K G G EAVWFK G+ + L+Y G +
Sbjct: 98 EVIHSRWAMLGALGCVFPEILAKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YRI G E D L+PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 157 ILAIWASQVVLMGLIEGYRIGGGPLGEGLDSLYPGGAFDPLGLADDPEAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GPVENL HL+DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPVENLYDHLADPVANN 253
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/191 (55%), Positives = 132/191 (69%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 123
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 183
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPLG 182
Query: 184 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
E DK++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GPVENL
Sbjct: 183 EGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENL 242
Query: 242 AKHLSDPFANN 252
HL+DP ANN
Sbjct: 243 FDHLADPVANN 253
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 134/207 (64%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 49 GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWAML 105
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK GA + L+Y G I + A+ A ++V
Sbjct: 106 GALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVV 164
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G + D L+PGG FDPLGLA DP+ FA LKVKEIKNGR AMF+M G
Sbjct: 165 LMGAVEGYRIAGGPLGKVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRSAMFSMFG 224
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/215 (52%), Positives = 140/215 (65%), Gaps = 10/215 (4%)
Query: 44 LTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 102
+ SSP GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+
Sbjct: 10 VQSSSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 66
Query: 103 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 160
IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G + +
Sbjct: 67 IHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 125
Query: 161 AVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 217
A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGR
Sbjct: 126 AIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 185
Query: 218 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
LAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 186 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 220
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/204 (50%), Positives = 133/204 (65%), Gaps = 7/204 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G +P YL GE PGDYG+D GLS P+ F Y+ ELIHARWAML
Sbjct: 10 GPDRALWL--GPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAML 67
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIV 167
GA G + PE +K+ E+VWFK G+ + L+Y G + + A++ ++V
Sbjct: 68 GALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVV 127
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D LHPG FDPLGLA DPD FA LK+KEIKNGRLAMF+M G
Sbjct: 128 LMGLIEAYRVNGGPLGEGLDTLHPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFG 187
Query: 226 FFLQAYVTGEGPVENLAKHLSDPF 249
F++QA VTG+GP+EN A H++DPF
Sbjct: 188 FYVQAIVTGKGPIENWADHVADPF 211
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 143/225 (63%), Gaps = 10/225 (4%)
Query: 37 SPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + P++ SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 38 TATKAKPVSSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFA 94
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE F + G G EAVW K G+ + L+Y G
Sbjct: 95 KNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLGNPSL 153
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A +++L+G E YR+ G + D L+PGG FDPLGLA+DP+ FA LKV
Sbjct: 154 VHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKV 213
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
KE KNGRLAMF+M GFF+QA VTG+GP+ENLA HL DP NN +
Sbjct: 214 KETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWS 258
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 137/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 49 GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 105
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK GA + L+Y G + + A+ A +++
Sbjct: 106 GALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPGLVHAQSILAIWACQVI 164
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 165 LMGAVEGYRIGGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 224
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 144/230 (62%), Gaps = 15/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK ++ S SP GPDR +L E P YLTGE PGDYG+D GL
Sbjct: 8 RKSATTKKVASSGSPWY------GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 58
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L
Sbjct: 59 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 117
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G + + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP
Sbjct: 118 DYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 177
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 178 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 138/218 (63%), Gaps = 10/218 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+ E+IHARWAML
Sbjct: 393 GPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAML 449
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE G G AVW+K GA + + LNY G I+ +V ++ +
Sbjct: 450 GALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 509
Query: 168 LVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
++G E YR G+ D D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AM
Sbjct: 510 IMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAM 569
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 261
LGF++Q VT GPVENL HL+DP ANN+ + SG A
Sbjct: 570 LGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGFA 607
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/214 (48%), Positives = 133/214 (62%), Gaps = 10/214 (4%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T S GP+R +L G L +PEYL GE GDYG+D GL+ P F +Y+ EL +
Sbjct: 151 TGSKWYGPNRPKWL--GPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQN 208
Query: 105 ARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVF 160
RWAMLG G + PE N FG PE VWFKTGA +L+G +++Y I NL+
Sbjct: 209 GRWAMLGVLGCLAPEVLSNVFGVPY-PEPVWFKTGATILNGGSIDYLANPKLIHASNLLL 267
Query: 161 AVIAEIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 217
++ E+V AE +R L +DK +PGG FDPLGL+KDP FA KVKE+KNGR
Sbjct: 268 TLVLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNGR 327
Query: 218 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 251
LAM AMLG F+QA VTG+ P+ENL+ HL++P N
Sbjct: 328 LAMLAMLGLFVQAGVTGQSPLENLSAHLANPGVN 361
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 93/149 (62%), Gaps = 7/149 (4%)
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGL 181
G G AVW+K GA + + LNY G I+ +V ++ + ++G E YR G+
Sbjct: 3 GVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGV 62
Query: 182 -DLE---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237
D D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AMLGF++Q VT GP
Sbjct: 63 GDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGP 122
Query: 238 VENLAKHLSDPFANNLLTVISGNAERAPT 266
VENL HL+DP ANN+ + SG A A T
Sbjct: 123 VENLTFHLADPSANNIFSFTSGFAMFAAT 151
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 72/181 (39%), Gaps = 38/181 (20%)
Query: 68 IPEYLTGEVPGDYG-----------YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 116
+ Y G GD+G +DP GL+ PD ++ + EL + R AM+ GF
Sbjct: 53 VEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFY 112
Query: 117 IPEAFNKFG---------ANCGPEAVW-FKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
+ K G A+ ++ F +G + ++G N P L
Sbjct: 113 VQPLVTKAGPVENLTFHLADPSANNIFSFTSGFAMFAATGSKWYGPNRPKWLG------- 165
Query: 167 VLVGGA--EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L GGA EY + D FD GLA DP F + E++NGR AM +L
Sbjct: 166 PLSGGAVPEYLKGEYAGDYG--------FDTAGLAADPKLFQRYRDAELQNGRWAMLGVL 217
Query: 225 G 225
G
Sbjct: 218 G 218
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 138/218 (63%), Gaps = 10/218 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+ E+IHARWAML
Sbjct: 47 GPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAML 103
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE G G AVW+K GA + + LNY G I+ +V ++ +
Sbjct: 104 GALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 163
Query: 168 LVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
++G E YR G+ D D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AM
Sbjct: 164 IMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAM 223
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 261
LGF++Q VT GPVENL HL+DP +NN+ + SG A
Sbjct: 224 LGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGFA 261
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+ E+IHARWAML
Sbjct: 282 GPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAML 338
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGA 139
GA G + PE G G AVW+K GA
Sbjct: 339 GALGVVTPELLAGNGVPFGEGAVWYKAGA 367
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/255 (48%), Positives = 159/255 (62%), Gaps = 23/255 (9%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLPSLSPSPSP----PLTKSSPS----GPDRRIFLPEGLL 63
+HQT +S L ++PRR L+ + S KS+P GPDR P+ L
Sbjct: 6 LHQT---TSFLGTAPRRDE-LVRRVGDSGGRITMRRTVKSAPQSIWYGPDR----PKYLG 57
Query: 64 DRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 122
SE P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE +
Sbjct: 58 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILS 117
Query: 123 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 179
K G G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+
Sbjct: 118 KNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG 176
Query: 180 GLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237
G E DK++P G FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP
Sbjct: 177 GPLGEGLDKVYPSGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 236
Query: 238 VENLAKHLSDPFANN 252
+ENL H++DP ANN
Sbjct: 237 IENLFDHVADPVANN 251
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/213 (53%), Positives = 136/213 (63%), Gaps = 9/213 (4%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
+ +S GP+R +L + P YLTGE GDYG+D GLS P+ F +Y+ ELIH
Sbjct: 36 SGTSWYGPERAKWLGP---FSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIH 92
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV 162
ARWAMLGA G I PE K G G EAVWFK GA + LNY G + I + A
Sbjct: 93 ARWAMLGALGCITPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILAT 151
Query: 163 IA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 219
+A +++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLA
Sbjct: 152 LACQVILMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLA 211
Query: 220 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
MF+M GFF+QA VTG+GP+ NL HLSDP NN
Sbjct: 212 MFSMFGFFVQAIVTGQGPIANLDAHLSDPSGNN 244
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 136/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 52 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K G G EAVWFK GA + L+Y G I + A+ A ++V
Sbjct: 109 GALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVV 167
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 168 LMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 228 FFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/224 (49%), Positives = 143/224 (63%), Gaps = 10/224 (4%)
Query: 35 SLSPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
S+ + S ++ SP GPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 14 SMRKTASKTVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPET 70
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F+K + E+IH+RWAMLGA G + PE + G G EA WFK G+ + L+Y G
Sbjct: 71 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EACWFKAGSQIFSEGGLDYLGNQ 129
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
I + A+ A +++L+G E YRI G ++ D ++PGG FDPL LA DP+ FA L
Sbjct: 130 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAEL 189
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 190 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 233
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 144/230 (62%), Gaps = 15/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK ++ S SP GPDR +L E P YLTGE PGDYG+D GL
Sbjct: 8 RKSATTKKVASSGSPWY------GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 58
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L
Sbjct: 59 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 117
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G + + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP
Sbjct: 118 DYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 177
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 178 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 136/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 52 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K G G EAVWFK GA + L+Y G I + A+ A ++V
Sbjct: 109 GALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVV 167
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 168 LMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 228 FFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/211 (54%), Positives = 139/211 (65%), Gaps = 10/211 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G L + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 54 GPDRGLWL--GPLSGT-TPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAML 110
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K G E VWFK GA + L+Y G + + A +A +++
Sbjct: 111 GALGCITPELLAKNGTPI-VEPVWFKAGAQIFAEGGLDYLGNPGLVHAQSILATLAVQVI 169
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E YR+ G E DKLHPGG F DPLGLA+DPD FA LKVKEIKNGRLAMF+M
Sbjct: 170 LMGAIEGYRVNGGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAMFSMF 229
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
GFF+QA VTG+GP+ NL +HL+ PF +N T
Sbjct: 230 GFFVQAIVTGKGPLANLDEHLASPFTSNAFT 260
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 153/259 (59%), Gaps = 27/259 (10%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPL---------TKSSPSGPDRRIFLPEGLLD 64
T+ LSSP + K LSP+ S L T + P GP + +
Sbjct: 4 STMALSSPAFAGKAVK------LSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVK 57
Query: 65 -----RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE
Sbjct: 58 YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 117
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 176
+ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR
Sbjct: 118 LLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 176
Query: 177 IT-NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
+ NG + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VT
Sbjct: 177 VAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 236
Query: 234 GEGPVENLAKHLSDPFANN 252
G+GP+ENLA HL+DP NN
Sbjct: 237 GKGPIENLADHLADPVNNN 255
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 144/230 (62%), Gaps = 15/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK ++ S SP GPDR +L E P YLTGE PGDYG+D GL
Sbjct: 8 RKAATTKKVASSGSPWY------GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 58
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L
Sbjct: 59 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 117
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G + + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP
Sbjct: 118 DYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 177
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 178 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 137/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 51 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK GA + L+Y G + + A+ A ++V
Sbjct: 108 GALGCVFPEILARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVV 166
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E DK++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 167 LMGFVEGYRVGGGPLGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 226
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 227 FFVQAIVTGKGPIENLYDHLADPVANN 253
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 137/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 23 GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 79
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK GA + L+Y G + + A+ A +++
Sbjct: 80 GALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVI 138
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 139 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 198
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 199 FFVQAIVTGKGPLENLADHLADPVNNN 225
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 132/191 (69%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE +K G
Sbjct: 36 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 95
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 183
G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 96 TFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLG 154
Query: 184 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 155 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 214
Query: 242 AKHLSDPFANN 252
+ H++DP ANN
Sbjct: 215 SDHIADPVANN 225
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 51 GPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 108 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVI 166
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 167 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFG 226
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP++NLA H++DP NN
Sbjct: 227 FFVQAIVTGKGPLKNLADHIADPVNNN 253
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 145/222 (65%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + P+ SP G DR ++L G L + P YLTGE PGDYG+D GLS P+ F+
Sbjct: 37 TAAKAKPVPSGSPWYGADRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADPETFA 93
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 94 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 152
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 153 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKV 212
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KE+KNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 213 KEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNN 254
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 146/230 (63%), Gaps = 15/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK P ++ S SP GPDR +L E P YLTGE PGDYG+D GL
Sbjct: 2 RKTVGKPKVAASGSPWY------GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 52
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L
Sbjct: 53 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGL 111
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP
Sbjct: 112 DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 171
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 172 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 221
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 135/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 52 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K G G EAVWFK GA + L+Y G I + A+ A ++V
Sbjct: 109 GALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVV 167
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 168 LMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 228 FFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 137/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 23 GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 79
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK GA + L+Y G + + A+ A +++
Sbjct: 80 GALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVI 138
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 139 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 198
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 199 FFVQAIVTGKGPLENLADHLADPVNNN 225
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/218 (53%), Positives = 142/218 (65%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPESIWYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G PE K G G EAVWFK GA + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 156 SILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELK 215
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF+M GFF+QA VTG+GPV+NL H++DP ANN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPVANN 253
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 141/218 (64%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPESIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE K G G EAVWFK GA + L+Y G +
Sbjct: 98 EVIHSRWAMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNG---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YR+ G L DK++PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 157 ILAIWASQVVLMGFVEGYRVGGGPLGWGL-DKIYPGGSFDPLGLADDPEAFAELKVKELK 215
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 253
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 140/223 (62%), Gaps = 10/223 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+ E+IHARWAML
Sbjct: 99 GPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAML 155
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE G G AVW+K GA + + LNY G I+ +V ++ +
Sbjct: 156 GALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 215
Query: 168 LVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
++G E YR G+ D D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AM
Sbjct: 216 IMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAM 275
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 266
LGF++Q VT GPVENL HL+DP +NN+ + SG A A +
Sbjct: 276 LGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGFAMFAAS 318
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 135/218 (61%), Gaps = 15/218 (6%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+ E+IHARWAML
Sbjct: 334 GPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAML 390
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
+ PE G G AVW+K GA + + LNY G I+ +V ++ +
Sbjct: 391 -----VTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 445
Query: 168 LVGGAEYYRITNGL-DLE---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
++G E YR G+ D D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AM
Sbjct: 446 IMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAM 505
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 261
LGF++Q VT GPVENL HL+DP +NN+ + SG A
Sbjct: 506 LGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGFA 543
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/82 (64%), Positives = 62/82 (75%)
Query: 185 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 244
D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AMLGF++Q VT GPVENL H
Sbjct: 2 DTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFH 61
Query: 245 LSDPFANNLLTVISGNAERAPT 266
L+DP +NN+ + SG A A +
Sbjct: 62 LADPSSNNIFSFTSGFAMFAAS 83
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 143/218 (65%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 39 VKSAPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRE 94
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G + PE +K G G EAVWFK GA + L+Y G +
Sbjct: 95 LEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQ 153
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 154 SILAIWASQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELK 213
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
N RLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 214 NSRLAMFSMFGFFVQAIVTGKGPIENLADHVADPVNNN 251
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 137/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
G DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 51 GADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIV 167
GA G + PE + G G EAVWFK G+ + L+Y G I + A+ ++V
Sbjct: 108 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVV 166
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 167 LMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 226
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE +K G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV-IAEIVLVGGAEYYRITNGLDL 183
G EAVWFK G+ + L+Y G I + A+ A++VL+G E YR+ G
Sbjct: 124 TFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLG 182
Query: 184 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 242 AKHLSDPFANN 252
H++DP ANN
Sbjct: 243 YDHVADPVANN 253
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G
Sbjct: 62 ETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 121
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 122 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLG 180
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 181 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 240
Query: 242 AKHLSDPFANN 252
HL+DP ANN
Sbjct: 241 NDHLADPVANN 251
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAML
Sbjct: 49 GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 105
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 106 GALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 164
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 165 LMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 224
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/191 (54%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YLTGE PGDYG+D GLS P+ F++ E+IH RWAMLGA G + PE +K G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRWAMLGALGCVFPEILSKNGV 123
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 183
G EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G
Sbjct: 124 TFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLG 182
Query: 184 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 242 AKHLSDPFANN 252
+ H++DP ANN
Sbjct: 243 SDHIADPVANN 253
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 135/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 52 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K G G EAVWFK GA + L+Y G I + A+ A ++V
Sbjct: 109 GALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVV 167
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 168 LMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPESFAELKVKEIKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 228 FFVQAIVTGKGPIENLYDHLADPTANN 254
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/247 (47%), Positives = 149/247 (60%), Gaps = 21/247 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ R+ S+S S SP GPDR ++L
Sbjct: 23 LLGVGAGVHGEARVTM------RKATTKKVSVSASTSPWY------GPDRVLYLGP---F 67
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 68 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 127
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 128 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 186
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 187 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 246
Query: 240 NLAKHLS 246
NLA HL+
Sbjct: 247 NLADHLA 253
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 132/191 (69%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE +K G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 183
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLG 182
Query: 184 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 242 AKHLSDPFANN 252
+ H++DP ANN
Sbjct: 243 SDHINDPVANN 253
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 134/207 (64%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 39 GPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G + PE K G G EAVWFK GA + L+Y G + N+V + +++
Sbjct: 97 GALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVI 155
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNG LAMF+M G
Sbjct: 156 LMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGALAMFSMFG 215
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GPV+NL HL++P NN
Sbjct: 216 FFVQAIVTGKGPVQNLDDHLANPGVNN 242
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/189 (52%), Positives = 131/189 (69%), Gaps = 6/189 (3%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL+GE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K G
Sbjct: 66 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKF 125
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 183
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ G ++
Sbjct: 126 G-EAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEV 184
Query: 184 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243
ED ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL+
Sbjct: 185 EDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSD 244
Query: 244 HLSDPFANN 252
HL+DP NN
Sbjct: 245 HLADPAVNN 253
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NG-- 180
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ NG
Sbjct: 125 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 183
Query: 181 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
+ ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 184 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 243
Query: 241 LAKHLSDPFANN 252
LA HL+DP NN
Sbjct: 244 LADHLADPVNNN 255
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/218 (53%), Positives = 141/218 (64%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPESIWYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G PE K G G EAVWFK GA + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A +VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 156 SILAIWATRVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELK 215
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF+M GFF+QA VTG+GPV+NL H++DP ANN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADPVANN 253
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/224 (49%), Positives = 143/224 (63%), Gaps = 10/224 (4%)
Query: 35 SLSPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
S+ + S ++ SP GPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 14 SMRKTASKTVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPET 70
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F+K + E+IH+RWAMLGA G + PE + G G EA WFK G+ + L+Y G
Sbjct: 71 FAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQ 129
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
I + A+ A +++L+G E YRI G ++ D ++PGG FDPL LA DP+ FA L
Sbjct: 130 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAEL 189
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL++P NN
Sbjct: 190 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNN 233
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 139/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR FL + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE K G G E+VWFK GA + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCVFPEILAKNGVKFG-ESVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWASQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLA F+M GFF+QA VTG+GPVENL HL+DP ANN
Sbjct: 217 GRLATFSMFGFFVQAIVTGKGPVENLLDHLADPVANN 253
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 139/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH RWAMLGA G + PE K G G EAVWFK GA + L+Y G I
Sbjct: 98 EVIHCRWAMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DP+ FA LKVKEIKN
Sbjct: 157 ILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPEAFAELKVKEIKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 115/208 (55%), Positives = 137/208 (65%), Gaps = 11/208 (5%)
Query: 51 GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAM
Sbjct: 52 GPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 107
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EI 166
LGA G + PE K G G EAVWFK GA + L+Y G I + A+ A ++
Sbjct: 108 LGALGCLFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 166
Query: 167 VLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 226
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 227 GFFVQAIVTGKGPIENLYDHLADPVANN 254
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 143/236 (60%), Gaps = 9/236 (3%)
Query: 22 LLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 81
L SS + S+ + + S GPDR +L E P YLTGE PGDYG
Sbjct: 21 LSSSSEVQGDARVSMRKTAATKKVGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYG 77
Query: 82 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 141
+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ +
Sbjct: 78 WDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGSQI 136
Query: 142 LDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPL 196
L Y G + + A+ A ++VL+G E YR+ G ++ D L+PGG FDPL
Sbjct: 137 FSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPL 196
Query: 197 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GLA D + FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 197 GLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/222 (49%), Positives = 143/222 (64%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + P++ SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 38 TAAKAKPVSSGSPWYGPDRVKYLGP---FSGEAPSYLTGEKPGDYGWDTAGLSADPETFA 94
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWA+L G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 95 KNRELEVIHCRWAILERLGCVFPELLSRNGVKFG-EAVWFKVGSQIFSEGGLDYLGNPSL 153
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 154 VHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKV 213
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/192 (53%), Positives = 130/192 (67%), Gaps = 7/192 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 65 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 124
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 183
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ L
Sbjct: 125 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNEPL 183
Query: 184 ---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 184 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 243
Query: 241 LAKHLSDPFANN 252
LA HL+DP NN
Sbjct: 244 LADHLADPVNNN 255
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 140/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L +IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G PE K G G EAVWFK GA + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE +K G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 183
G EAVWFK G+ + L+Y G I + AV A ++VL+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLG 182
Query: 184 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 242 AKHLSDPFANN 252
H++DP ANN
Sbjct: 243 FDHVADPVANN 253
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 112/215 (52%), Positives = 138/215 (64%), Gaps = 15/215 (6%)
Query: 37 SPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 96
S SPSP GPDR ++L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 49 SASPSPWY------GPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 99
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--I 154
+ E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 100 NRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLI 158
Query: 155 PINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 211
+ A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DPD FA LKVK
Sbjct: 159 HAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVK 218
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 246
EIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+
Sbjct: 219 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLA 253
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 112/207 (54%), Positives = 136/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 32 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 88
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K G G EAVWFK GA + L+Y G I + A+ A ++V
Sbjct: 89 GALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVV 147
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 148 LMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 207
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 208 FFVQAIVTGKGPIENLYDHLADPVANN 234
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NG-- 180
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ NG
Sbjct: 120 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 178
Query: 181 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
+ ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 179 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 238
Query: 241 LAKHLSDPFANN 252
LA HL+DP NN
Sbjct: 239 LADHLADPVTNN 250
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 60 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 119
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NG-- 180
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ NG
Sbjct: 120 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 178
Query: 181 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
+ ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 179 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 238
Query: 241 LAKHLSDPFANN 252
LA HL+DP NN
Sbjct: 239 LADHLADPVTNN 250
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAML
Sbjct: 5 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 61
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE +K G G EAVWFK GA + L+Y G + + A+ A ++V
Sbjct: 62 GALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVV 120
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M G
Sbjct: 121 LMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFG 180
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL H++DP ANN
Sbjct: 181 FFVQAIVTGKGPIENLFDHVADPVANN 207
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 141/217 (64%), Gaps = 10/217 (4%)
Query: 42 PPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
P + SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 42 PAASSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 98
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 99 EVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQS 157
Query: 159 VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KN
Sbjct: 158 ILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKN 217
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP+ENLA L+DP NN
Sbjct: 218 GRLAMFSMFGFFVQAIVTGKGPLENLADPLADPVNNN 254
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 110/224 (49%), Positives = 145/224 (64%), Gaps = 10/224 (4%)
Query: 35 SLSPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
S+ + + ++ SP GPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 32 SMRKTVTKQVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPET 88
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 89 FAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 147
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
I + A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA L
Sbjct: 148 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAEL 207
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+ P NN
Sbjct: 208 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/191 (56%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K G
Sbjct: 63 QTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGV 122
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 183
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 123 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRIGGGPLG 181
Query: 184 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
E D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GPVENL
Sbjct: 182 EGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENL 241
Query: 242 AKHLSDPFANN 252
HL+DP NN
Sbjct: 242 YDHLADPATNN 252
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 140/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L +IP YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G PE + G G EAVWFK GA + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCTFPEILERNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/192 (56%), Positives = 127/192 (66%), Gaps = 6/192 (3%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
+ P YLTGE GDYG+D GLS P+ F +Y+ ELIHARWAMLGA G I PE K G
Sbjct: 53 TATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCITPELLAKNG 112
Query: 126 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD 182
G EAVWFK GA + LNY G + I + A +A +++L+G E YR+ G
Sbjct: 113 VPFG-EAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQVILMGLVEGYRVNGGPA 171
Query: 183 LE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ N
Sbjct: 172 GEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIAN 231
Query: 241 LAKHLSDPFANN 252
L HLSDP NN
Sbjct: 232 LDAHLSDPSGNN 243
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 141/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L +IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE K G G EAVWFK GA + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGIVFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF++ GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 217 GRLAMFSVFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 136/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 9 GPERVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 65
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK GA + L+Y G + + A+ A +++
Sbjct: 66 GALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVL 124
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 125 LMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 184
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 185 FFVQAIVTGKGPLENLADHLADPVNNN 211
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/191 (53%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P Y TGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE +K G
Sbjct: 64 QTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 183
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLG 182
Query: 184 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 242 AKHLSDPFANN 252
+ H++DP ANN
Sbjct: 243 SDHINDPVANN 253
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 140/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE K G G E+VWFK G+ + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCVFPEILAKNGVKFG-ESVWFKAGSQIFSEGGLDYLGNPNLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWASQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA +TG+GP+ENL HL+DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIITGKGPIENLLDHLADPVANN 253
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 47 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 106
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NG-- 180
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ NG
Sbjct: 107 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 165
Query: 181 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
+ ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 166 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 225
Query: 241 LAKHLSDPFANN 252
LA HL+DP NN
Sbjct: 226 LADHLADPVNNN 237
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 110/227 (48%), Positives = 139/227 (61%), Gaps = 16/227 (7%)
Query: 45 TKSSPS--------GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 96
TK++P+ GPDR +L + P YLTGE PGDYG+D GLS P+ F K
Sbjct: 27 TKAAPAKSAGIEWYGPDRAKWLGP---FSTNTPAYLTGEFPGDYGWDTAGLSADPETFKK 83
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
Y+ E+IHARWA+LGA G + PE + + E VWFK GA + L+Y G I
Sbjct: 84 YRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALI 143
Query: 157 ---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVK 211
N+V + ++VL+G E YR+ G E D L+PG FDPLGLA DPD FA LKVK
Sbjct: 144 HAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVK 203
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
EIKNGRLAMF+ GFF+QA VTG+GP++NLA HL+DP NN +
Sbjct: 204 EIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAAT 250
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 145/224 (64%), Gaps = 10/224 (4%)
Query: 35 SLSPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
S+ + + ++ SP GPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 32 SMRKTVTKQVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPET 88
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F++ + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 89 FARNRELEVIHSRWAMLGALGIVFPEPLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 147
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
I + A+ A +++L+G E YRI G ++ D +PGG FDPLGLA DP+ FA L
Sbjct: 148 SLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPTYPGGSFDPLGLADDPEAFAEL 207
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KVKE+KNGRLAMF++ GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 208 KVKELKNGRLAMFSVFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 117/258 (45%), Positives = 151/258 (58%), Gaps = 26/258 (10%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPL--------TKSSPSGPDRRIFLPEGLLD- 64
T+ LSSP L+ K LSP+ S S P+GP + +
Sbjct: 4 STMALSSPALTGKAVK------LSPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKY 57
Query: 65 ----RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 120
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE
Sbjct: 58 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEL 117
Query: 121 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 177
+ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+
Sbjct: 118 LARNGVEFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 176
Query: 178 TNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
L ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG
Sbjct: 177 AGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 236
Query: 235 EGPVENLAKHLSDPFANN 252
+GP+ENLA HL+DP NN
Sbjct: 237 KGPLENLADHLADPVNNN 254
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 117/258 (45%), Positives = 151/258 (58%), Gaps = 26/258 (10%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPL--------TKSSPSGPDRRIFLPEGLLD- 64
T+ LSSP L+ K LSP+ S S P+GP + +
Sbjct: 4 STMALSSPALTGKAVK------LSPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKY 57
Query: 65 ----RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 120
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE
Sbjct: 58 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEL 117
Query: 121 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 177
+ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+
Sbjct: 118 LARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 176
Query: 178 TNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
L ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG
Sbjct: 177 AGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 236
Query: 235 EGPVENLAKHLSDPFANN 252
+GP+ENLA HL+DP NN
Sbjct: 237 KGPLENLADHLADPVNNN 254
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 143/230 (62%), Gaps = 15/230 (6%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK ++ S SP GPDR +L E P YLTGE PGDYG+D GL
Sbjct: 8 RKSATTKKVASSGSPWY------GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 58
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L
Sbjct: 59 SADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 117
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDP 202
+Y G + + A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP
Sbjct: 118 DYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDP 177
Query: 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+ FA KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 178 EAFAEXKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 140/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L +IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G PE K G G EAVWFK G+ + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 149/251 (59%), Gaps = 13/251 (5%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSL-SPSPSPPLTKSSPSGPDRRIFLPEGLLD-----RSE 67
T+ LSSP + KP L S + T + P GP + + E
Sbjct: 4 STMALSSPAFAGKAVKPAASDVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGE 63
Query: 68 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 127
P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 64 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 123
Query: 128 CGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL- 183
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ L
Sbjct: 124 FG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLG 182
Query: 184 --EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
Query: 242 AKHLSDPFANN 252
A HL+DP NN
Sbjct: 243 ADHLADPVNNN 253
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 136/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 54 GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 110
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++V
Sbjct: 111 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVV 169
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 170 LMGAVEGYRIAGGPLGEVVDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 229
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL DP NN
Sbjct: 230 FFVQAIVTGKGPLENLADHLFDPVNNN 256
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 137/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F++ E+IH+RWAML
Sbjct: 49 GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNPELEVIHSRWAML 105
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 106 GALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 164
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 165 LMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 224
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 140/216 (64%), Gaps = 10/216 (4%)
Query: 43 PLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 101
P++ SP GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 41 PVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 97
Query: 102 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 159
+IH RWAM GA G + PE ++ G G EAVWFK G+ + L+Y G I +
Sbjct: 98 VIHCRWAMPGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPSLIHAQSI 156
Query: 160 FAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
A+ A +++L+G E YRI G ++ D ++PGG FDPLGLA P+ FA LKVKEIKNG
Sbjct: 157 LAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADVPEAFAELKVKEIKNG 216
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
RLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 140/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L +IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G PE K G G EAVWFK G+ + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 143/218 (65%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE PGDY +D GLS P+ F++ +
Sbjct: 29 VKSAPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPETFARNRE 84
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G + PE +K G G EAVWFK GA + L+Y G +
Sbjct: 85 LEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQ 143
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 144 SILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELK 203
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 204 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 241
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 100/189 (52%), Positives = 128/189 (67%), Gaps = 5/189 (2%)
Query: 72 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 131
LTGE PGDYG+D GLS P+ F KY+ ELIHARWAMLGA G + PE ++G E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 132 AVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVLVGGAEYYRITNGLDLE--DK 186
+VWF+ GA + L+Y G I+ + VI++++L+G E YR+ G E D
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGEGLDP 120
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 246
L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF++QA VTG+GPVEN A+H++
Sbjct: 121 LYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHVA 180
Query: 247 DPFANNLLT 255
DPF N +
Sbjct: 181 DPFTANAFS 189
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 140/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 38 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNREL 94
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE K G G EAVWFK GA + L+Y G +
Sbjct: 95 EVIHSRWAMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQS 153
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DPD A LKVKE+KN
Sbjct: 154 ILAIWACQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKN 213
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 214 GRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 250
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 128/191 (67%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YL GE GDYG+D GLS + F++ + E+IHARWAMLGA G + PE K G
Sbjct: 66 ETPSYLNGEFAGDYGWDTAGLSSDLETFARNRELEVIHARWAMLGALGCLTPELLAKSGV 125
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 126 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLG 184
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 242 AKHLSDPFANN 252
HL+DP ANN
Sbjct: 245 NDHLADPVANN 255
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 132/207 (63%), Gaps = 8/207 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 38 GPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 95
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 167
GA G PE K G G EAVWFK GA + L+Y G + N+V +++
Sbjct: 96 GALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVI 154
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLA F+M G
Sbjct: 155 LMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFG 214
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GPV+NL HL++P NN
Sbjct: 215 FFVQAIVTGKGPVQNLDDHLANPTVNN 241
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 134/207 (64%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 53 GPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 109
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K G G EAVWFK G+ + L+Y G + + A+ A +++
Sbjct: 110 GALGCVTPELLAKNGIKFG-EAVWFKAGSQIFKEGGLDYLGNPNLVHAQSILAIWASQVI 168
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M G
Sbjct: 169 LMGAVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFG 228
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF QA VTG+GP+ENL HL +P NN
Sbjct: 229 FFTQAIVTGKGPIENLLDHLDNPTVNN 255
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/222 (49%), Positives = 144/222 (64%), Gaps = 10/222 (4%)
Query: 37 SPSPSPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + + ++ SSP G DR ++L G L R E P YLTG+ PGDYG+D GLS P+ FS
Sbjct: 37 TAAKAKQVSSSSPWYGADRVLYL--GPLSR-EPPSYLTGDFPGDYGWDTAGLSADPETFS 93
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 94 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 152
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA+ P F LKV
Sbjct: 153 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGRFDPLGLAERPQAFDALKV 212
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GF +QA VTG+GP+ENLA H++DP NN
Sbjct: 213 KEIKNGRLAMFSMFGFLVQAIVTGKGPLENLADHIADPVNNN 254
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 140/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE K G G E+VWFK G+ + L+Y G I
Sbjct: 98 EVIHSRWAMLGALGCVFPELLAKNGVKFG-ESVWFKAGSQIFSEGGLDYLGNPNLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKE+KN
Sbjct: 157 ILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 31 ESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 90
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NG-- 180
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ NG
Sbjct: 91 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 149
Query: 181 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
+ ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 150 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 209
Query: 241 LAKHLSDPFANN 252
LA HL+DP NN
Sbjct: 210 LADHLADPVNNN 221
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 139/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 40 VKSTPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH RWAMLGA G + PE +K G G EAVWFK GA + L+Y G I
Sbjct: 97 EVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 155
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DP+ FA LKVKEIKN
Sbjct: 156 ILAIWACQVVLMGFIEGYRVGGGPLGEGLDSIYPGGAFDPLGLADDPEAFAELKVKEIKN 215
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GP+ENL HL+D ANN
Sbjct: 216 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADLAANN 252
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 135/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 52 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K G G EAVWFK GA + L+Y G I + A+ A ++
Sbjct: 109 GALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVG 167
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 168 LMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 228 FFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 142/218 (65%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPESIWYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G PE K G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQ 155
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 156 SILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELK 215
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF+M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/218 (52%), Positives = 142/218 (65%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPESIWYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G PE K G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQ 155
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 156 SILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELK 215
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF+M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 136/217 (62%), Gaps = 10/217 (4%)
Query: 44 LTKSSPS--GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 101
+T++S GPDR FL P YL GE PGDYG+D GLS P+ FS+Y+ E
Sbjct: 21 VTRASAEFYGPDRVKFLGP---FSGATPSYLKGEYPGDYGWDTAGLSADPETFSRYRELE 77
Query: 102 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---L 158
+IHARWAMLGA G + PE K GA EAVWFK GA + L+Y G ++ +
Sbjct: 78 VIHARWAMLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGLDYLGNANLVHAQSI 137
Query: 159 VFAVIAEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
V ++ +IVL+G E YR+ G ++ D ++PG FDPLGLA DPD A LKVKEIKNG
Sbjct: 138 VAVLLTQIVLMGLIEGYRVNGGPAGEITDPIYPGEAFDPLGLADDPDTLAELKVKEIKNG 197
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNL 253
RLAM +M GFF+QA VTG+GP+ENL HL+ P N
Sbjct: 198 RLAMVSMFGFFIQAIVTGKGPIENLNDHLAAPGETNF 234
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 136/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAML
Sbjct: 46 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 102
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K G G EAVWFK GA + L+Y G + + A+ A ++V
Sbjct: 103 GALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVV 161
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M G
Sbjct: 162 LMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFG 221
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL H++DP ANN
Sbjct: 222 FFVQAIVTGKGPIENLFDHVADPVANN 248
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 141/218 (64%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 41 VKSAPESIWYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRE 96
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G PE K G G EAVWFK GA + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 156 SILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELK 215
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF+M GFF+QA VT +GPV+NL H++DP ANN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTDKGPVQNLYDHVADPVANN 253
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 135/216 (62%), Gaps = 24/216 (11%)
Query: 51 GPDRRIFL----PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
GPDR FL PE +YLTGE PGDYG+D GLS P FS+Y+ E+IHAR
Sbjct: 31 GPDRAKFLGPFTPE--------SDYLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHAR 82
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA 164
WAMLGA G I PE K G G EAVWFK GA + LNY G + + A +A
Sbjct: 83 WAMLGALGCITPELLAKNGVPFG-EAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLA 141
Query: 165 -EIVLVGGAEYYRITNGL------DLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNG 216
+++L+G AE YR G DL D L+PGG F DPLGLA DPD A LKVKE+KNG
Sbjct: 142 VQVILMGAAEAYRANGGAPGGFGEDL-DSLYPGGKFFDPLGLADDPDTLAELKVKELKNG 200
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
RLAMF+M GFF+QA VTG+GP+ NL HL+DP NN
Sbjct: 201 RLAMFSMFGFFVQAIVTGQGPIANLDAHLADPSGNN 236
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 136/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 51 GPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++V
Sbjct: 108 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVV 166
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ F LKVKE+K GRLAM +M G
Sbjct: 167 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFG 226
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA H++DP NN
Sbjct: 227 FFVQAIVTGKGPLENLADHIADPVNNN 253
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 142/218 (65%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 39 VKSAPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRE 94
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
+IH+RWAMLGA G + PE +K G G EAVWFK GA + L+Y G +
Sbjct: 95 LGVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQ 153
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YRI G E DK++PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 154 SILAIWASQVVLMGFVEGYRIGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELK 213
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF+M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 129/192 (67%), Gaps = 7/192 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE + G
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 183
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ L
Sbjct: 124 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPL 182
Query: 184 ---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
ED L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 183 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 242
Query: 241 LAKHLSDPFANN 252
LA HL+DP NN
Sbjct: 243 LADHLADPVNNN 254
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 136/216 (62%), Gaps = 12/216 (5%)
Query: 42 PPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 101
P + S GPDR FL G +P YLTGE PGDYG+D GLS P+ F +++ E
Sbjct: 29 PSKSDSVWYGPDRPKFL--GPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKRFRTVE 86
Query: 102 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---L 158
+IHARWAMLGA G I PE K+ EAVWFK GA + LNY G ++ +
Sbjct: 87 VIHARWAMLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHAQSI 146
Query: 159 VFAVIAEIVLVGGAEYYRITNGL------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 212
V ++ +++L+G E YR NG + +D L+PGG FDPLGLA DPD A LKVKE
Sbjct: 147 VATLVVQVLLMGAVEIYR-ANGEGPSGFGEGQDNLYPGGAFDPLGLADDPDTLAELKVKE 205
Query: 213 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
+KNGRLAM +MLGFF+QA VTG+GP++NL HL +P
Sbjct: 206 LKNGRLAMMSMLGFFVQAIVTGKGPLDNLLTHLEEP 241
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 136/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAML
Sbjct: 46 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAML 102
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K G G EAVWFK GA + L+Y G + + A+ A ++V
Sbjct: 103 GALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVV 161
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M G
Sbjct: 162 LMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFG 221
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL H++DP ANN
Sbjct: 222 FFVQAIVTGKGPIENLFDHVADPVANN 248
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/207 (51%), Positives = 139/207 (67%), Gaps = 10/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G +S P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAML
Sbjct: 38 GPNRAGYL--GPFTKS--PSYLNGEYPGDYGWDTAGLSADPETFARYREIEVIHARWAML 93
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE K G + G EAVW+K G+ + L+Y G I+ ++ V ++++
Sbjct: 94 GALGCVTPELLAKNGVSFG-EAVWWKAGSQIFAPGGLDYLGNPSLIHAQSIIAIVFSQVL 152
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA L+VKEIKNGRLAMF+M G
Sbjct: 153 LMGLIEGYRVNGGPAGEGLDALYPGEAFDPLGLADDPDTFAELRVKEIKNGRLAMFSMFG 212
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL++P NN
Sbjct: 213 FFVQAIVTGKGPIENLADHLANPSVNN 239
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 142/218 (65%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE GDYG+D GLS P+ F++ +
Sbjct: 39 VKSAPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRE 94
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G + PE +K G G EAVWFK GA + L+Y G +
Sbjct: 95 LEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQ 153
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 154 SILAIWASQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELK 213
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF+M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 136/210 (64%), Gaps = 8/210 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +FL GL E P YL GE PGDYG+D GLS P+ F +Y+ ELIHARWA+L
Sbjct: 42 GPNRPLFL-GGL--SGEPPAYLNGEFPGDYGWDTAGLSADPETFKRYRQLELIHARWALL 98
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G ++PE + G + VWFK GA + LNY G ++ +V ++ ++V
Sbjct: 99 GALGCVVPELLARNGVAMPADGVWFKVGAEIFKEGGLNYLGNENLVHAQSIVATLLVQLV 158
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G AE YRI G E D L+PGG FDPLGLA DPD A LKVKE+KNGR+AM AM G
Sbjct: 159 LMGWAEGYRINGGPLGEGLDPLYPGGAFDPLGLADDPDTLAELKVKELKNGRMAMAAMFG 218
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
F +QA VT +GP+ENLA HL+ P NN+ +
Sbjct: 219 FLVQAIVTQKGPLENLADHLAAPGTNNVFS 248
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 129/192 (67%), Gaps = 7/192 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE + G
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGV 123
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 183
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ L
Sbjct: 124 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPL 182
Query: 184 ---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
ED L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 183 GEAEDLLYPGGSFDPLGLAADPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 242
Query: 241 LAKHLSDPFANN 252
LA HL+DP NN
Sbjct: 243 LADHLADPVNNN 254
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 136/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 20 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 76
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K G G EAVWFK GA + L+Y G I + A+ A ++V
Sbjct: 77 GALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQVV 135
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 136 LMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 195
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 196 FFVQAIVTGKGPIENLFDHLADPTANN 222
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/248 (47%), Positives = 148/248 (59%), Gaps = 22/248 (8%)
Query: 2 SAVLLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEG 61
S LLG+ VH ++ RK S SPSP GPDR ++L
Sbjct: 20 SNQLLGVGAGVHGESRVT-------MRKSATKKFASESPSPWY------GPDRVLYLGP- 65
Query: 62 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 121
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE
Sbjct: 66 --FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 123
Query: 122 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT 178
+ G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI
Sbjct: 124 ARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIA 182
Query: 179 NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 236
G ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+G
Sbjct: 183 GGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 242
Query: 237 PVENLAKH 244
P+ENLA H
Sbjct: 243 PIENLADH 250
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/207 (53%), Positives = 135/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 52 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K G G EAVWFK GA + L+Y G I + A+ A ++V
Sbjct: 109 GALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQVV 167
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 168 LMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL HL+DP NN
Sbjct: 228 FFVQAIVTGKGPIENLFDHLADPANNN 254
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/192 (53%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 64 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 123
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NG-- 180
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ NG
Sbjct: 124 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 182
Query: 181 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
+ ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 183 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 242
Query: 241 LAKHLSDPFANN 252
L+ HL+DP NN
Sbjct: 243 LSDHLADPVNNN 254
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/192 (53%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G
Sbjct: 43 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV 102
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NG-- 180
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR+ NG
Sbjct: 103 KFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPL 161
Query: 181 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
+ ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 162 GEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 221
Query: 241 LAKHLSDPFANN 252
LA HL+DP NN
Sbjct: 222 LADHLADPVNNN 233
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 130/191 (68%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE +K G
Sbjct: 64 QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL 183
G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+ G
Sbjct: 124 KFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGLIEGYRVGGGPLG 182
Query: 184 E--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
E DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Query: 242 AKHLSDPFANN 252
++DP ANN
Sbjct: 243 FDQINDPVANN 253
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 140/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 39 VKSAPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 95
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G +
Sbjct: 96 EVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQS 154
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DPD A LKVKE+KN
Sbjct: 155 ILAIWACQVVLMGFIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPDTAAELKVKELKN 214
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA VTG+GPVENL H++DP NN
Sbjct: 215 GRLAMFSMFGFFVQAIVTGKGPVENLFDHVADPVNNN 251
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 135/217 (62%), Gaps = 12/217 (5%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
+K S GP R FL G P YLTGE PGDYG+D GLS P F++Y+ E+IH
Sbjct: 34 SKLSWYGPSRPKFL--GPYSDGATPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIH 91
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFA 161
ARWAMLGA G ++PE + G N WF GA + + L Y G IN +V
Sbjct: 92 ARWAMLGALGCVVPELLD--GTN---HIAWFNAGATIFSDDGLQYLGIPGLINAKSIVAT 146
Query: 162 VIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 219
+I +++L+ E YR+ G D ++PGG FDPLGLA DPD F+ LKVKEIKNGRLA
Sbjct: 147 LIVQVILMSYVEGYRVNGGPAGTGLDAVYPGGSFDPLGLADDPDTFSELKVKEIKNGRLA 206
Query: 220 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 256
M +M GFF+QA VTGEGP+ENL KHL+D ANN ++
Sbjct: 207 MLSMFGFFIQAIVTGEGPIENLNKHLADASANNFYSL 243
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 145/243 (59%), Gaps = 9/243 (3%)
Query: 9 QLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEI 68
L+ H L+ + + S + S + S GPDR ++L E
Sbjct: 15 SLKPHNNQLVGVGAGVHGEARVTMRKSSTKKVSASASTSPWYGPDRVLYLGP---FSGEP 71
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 131
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDL 183
G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G ++
Sbjct: 132 G-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEI 190
Query: 184 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243
D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF QA VTG+GP+ENLA
Sbjct: 191 TDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFXQAIVTGKGPIENLAD 250
Query: 244 HLS 246
HL+
Sbjct: 251 HLA 253
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 149/259 (57%), Gaps = 27/259 (10%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPL---------TKSSPSGPDRRIFLPEGLLD 64
T+ LSSP + K LSP+ S L T + P GP + +
Sbjct: 4 STMALSSPAFAGKAVK------LSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSERVK 57
Query: 65 -----RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
E P YLTGE PGDYG+D GLS P+ F++ + ++IH RWAMLGA G + PE
Sbjct: 58 YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAMLGALGCVFPE 117
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 176
+ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR
Sbjct: 118 LLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 176
Query: 177 ITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
+ L ED L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF QA VT
Sbjct: 177 VAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFAQAIVT 236
Query: 234 GEGPVENLAKHLSDPFANN 252
G+GP+ENLA HL+DP NN
Sbjct: 237 GKGPLENLADHLADPVNNN 255
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 143/221 (64%), Gaps = 15/221 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 96
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 155
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 156 SILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 215
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN +
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 143/221 (64%), Gaps = 15/221 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 96
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 155
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 156 SILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 215
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN +
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 143/221 (64%), Gaps = 15/221 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 96
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 155
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 156 SILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 215
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN +
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/190 (55%), Positives = 132/190 (69%), Gaps = 7/190 (3%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL+GE PGDYG+D GLS P+ F+KY+ E+IHARWAMLGA G + PE K G +
Sbjct: 36 PSYLSGEYPGDYGWDTAGLSADPETFAKYREIEVIHARWAMLGALGCLTPELLAKNGVSF 95
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE- 184
G EAVW+K GA + L+Y G + + A++A +++L+G E YR+ G E
Sbjct: 96 G-EAVWWKAGAQIFAPGGLDYLGNPSLVHAQSIIAILASQVLLMGAIEGYRVYGGPGGEG 154
Query: 185 -DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 242
DK++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 155 LDKVYPGGDYFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLE 214
Query: 243 KHLSDPFANN 252
HL+DP NN
Sbjct: 215 SHLADPSVNN 224
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 143/221 (64%), Gaps = 15/221 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 96
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 155
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 156 SILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 215
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN +
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 143/221 (64%), Gaps = 15/221 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 96
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 97 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 155
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 156 SILAIWAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 215
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN +
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 256
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/191 (53%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE ++ G
Sbjct: 37 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 96
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK GA + L+Y G + + A+ A +++L+G E YR+ G
Sbjct: 97 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGGPLG 155
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
+ L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 156 KVTGPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 215
Query: 242 AKHLSDPFANN 252
A HL+DP NN
Sbjct: 216 ADHLADPVNNN 226
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/191 (53%), Positives = 131/191 (68%), Gaps = 6/191 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE ++ G
Sbjct: 5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGV 64
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI G
Sbjct: 65 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLG 123
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 124 EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 183
Query: 242 AKHLSDPFANN 252
A HL+DP NN
Sbjct: 184 ADHLADPVNNN 194
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 143/221 (64%), Gaps = 15/221 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 42 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 97
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 98 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 156
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 157 SILAIWASQVVLMGLIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 216
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
NGRLAMF+M GFF+QA VTG+GP+ENL HL+DP ANN +
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWS 257
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 147/243 (60%), Gaps = 21/243 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ + S +K S SPSP GPDR ++L
Sbjct: 28 LLGVGAGVHGESRVT--MRKSATKKS--FASASPSPW--------YGPDRVLYLGP---F 72
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 73 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 132
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 133 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGP 191
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 192 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 251
Query: 240 NLA 242
NLA
Sbjct: 252 NLA 254
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 121/255 (47%), Positives = 156/255 (61%), Gaps = 23/255 (9%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLPSLSPSPSP----PLTKSSPS----GPDRRIFLPEGLL 63
+HQT +S L ++PRR L+ + S KS+P GPDR P+ L
Sbjct: 6 LHQT---TSFLGTAPRRDE-LVRRVGNSGGRITMRRTVKSAPQNIWYGPDR----PKYLG 57
Query: 64 DRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 122
SE P YLTG+ PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G PE +
Sbjct: 58 PFSEQTPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCFFPEILS 117
Query: 123 KFGANCGPEAVWFKTGALLLDGNTLNYFGKNI---PINLVFAVIAEIVLVGGAEYYRITN 179
K G N G EAVWFK GA + L+Y G P +++ ++VL+G E YR+
Sbjct: 118 KNGVNFG-EAVWFKAGAQIFSEGGLDYLGNPALVRPQSILAIWAVQVVLMGFVEGYRVGG 176
Query: 180 GLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237
G E DK++PGG FD LGLA+DPD FA KVKE NGRLAMF+MLGFF+QA VTG+GP
Sbjct: 177 GPLGEGLDKVYPGGAFDHLGLAEDPDTFAEFKVKEFNNGRLAMFSMLGFFVQAIVTGKGP 236
Query: 238 VENLAKHLSDPFANN 252
+EN H++DP ANN
Sbjct: 237 IENFFDHVADPVANN 251
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 142/221 (64%), Gaps = 10/221 (4%)
Query: 44 LTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 102
++ SSP G DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+
Sbjct: 44 VSSSSPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEV 100
Query: 103 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LV 159
IH RWAMLGA G + PE + G G EA WFK G+ + L+Y G ++ L+
Sbjct: 101 IHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLL 159
Query: 160 FAVIAEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 217
++VL+G E YRI G ++ D L+PGG FDPLGLA+ P FA LKVKEIKNGR
Sbjct: 160 AIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGR 219
Query: 218 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
LAMF+M GFF+QA VTG+GP+E+LA H++DP NN + +
Sbjct: 220 LAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIAT 260
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/207 (52%), Positives = 138/207 (66%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 51 GPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAV FK G+ + L+Y G I + A+ A ++V
Sbjct: 108 GALGCVFPELLARNGVKFG-EAVGFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVV 166
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+K GRLAMF+M G
Sbjct: 167 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKKGRLAMFSMFG 226
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA H++DP NN
Sbjct: 227 FFVQAIVTGKGPLENLADHIADPVNNN 253
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 139/217 (64%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 41 VKSTPQSIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGEL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH+RWAMLGA G + PE +K G G EAVWFK G+ + L+Y G +
Sbjct: 98 EVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKE+KN
Sbjct: 157 ILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAM +M GFF+QA VTG+GPVENL H++DP ANN
Sbjct: 217 GRLAMTSMFGFFVQAIVTGKGPVENLYDHVADPVANN 253
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 142/218 (65%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 42 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 97
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 98 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGSPNLIHAQ 156
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 157 SILAIWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 216
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 142/218 (65%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 42 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 97
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 98 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 156
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 157 SILAIWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 216
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 138/217 (63%), Gaps = 13/217 (5%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
KS P+ GPDR +L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSVPASIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
E+IH RWAMLGA G + PE +K G G EAVWFK GA + L+Y G I
Sbjct: 98 EVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQS 156
Query: 159 VFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A+ A ++VL+G E YRI G E D L+PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 157 ILAIWATQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKEIKN 216
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GRLAMF+M GFF+QA V G+GP+ENL+ L+ P ANN
Sbjct: 217 GRLAMFSMFGFFVQAIVPGKGPIENLSDPLAAPVANN 253
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 146/243 (60%), Gaps = 21/243 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ R+ S S S SP GPDR ++L
Sbjct: 28 LLGVGAGVHGEARVTM------RKATTKKVSASASTSPWY------GPDRVLYLGP---F 72
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 73 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 132
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 133 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 191
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 192 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 251
Query: 240 NLA 242
NLA
Sbjct: 252 NLA 254
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 141/218 (64%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE GDYG+D GLS P+ F++ +
Sbjct: 39 VKSAPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRE 94
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G + PE +K G G EAVWFK GA + L+Y G +
Sbjct: 95 LEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQ 153
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YR+ G E DK++PGG FDPLGLA DPD FA LKVKE+K
Sbjct: 154 SILAIWASQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELK 213
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NG LAMF+M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 214 NGSLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 145/243 (59%), Gaps = 21/243 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ R+ S S S SP GPDR ++L
Sbjct: 28 LLGVGAGVHGEARVTM------RKATTKKVSASASTSPWY------GPDRVLYLGP---F 72
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 73 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 132
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 133 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 191
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 192 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 251
Query: 240 NLA 242
NLA
Sbjct: 252 NLA 254
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 136/208 (65%), Gaps = 11/208 (5%)
Query: 51 GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
GPDR P+ L SE P YLTGE PGDYG+D +S P+ F+K + E+IH RWAM
Sbjct: 12 GPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAM 67
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EI 166
LGA G + PE K G G EAVWFK GA + L+Y G I + A+ A ++
Sbjct: 68 LGALGCVFPELLVKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 126
Query: 167 VLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 127 VLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMF 186
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 187 GFFVQAIVTGKGPIENLYDHLADPVANN 214
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/212 (50%), Positives = 135/212 (63%), Gaps = 9/212 (4%)
Query: 35 SLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 94
++ P+ S GP+R +FL E P YLTGE PGDYG+D GLS P+ F
Sbjct: 27 TVKPASKASTPDSFWYGPERPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETF 83
Query: 95 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 153
+Y+ ELIHARWAMLGA G I PE +G G EAVWFK GA + L+Y G
Sbjct: 84 KRYRELELIHARWAMLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYLGNPN 142
Query: 154 -IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLK 209
+ + A++ +++L+G E YR+ G E DKL+PGG FDPLGLA DPD FA LK
Sbjct: 143 LVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELK 202
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
VKEIKNGRLAMF+M GFF+QA VTG+GP++NL
Sbjct: 203 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNL 234
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/208 (53%), Positives = 136/208 (65%), Gaps = 11/208 (5%)
Query: 51 GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
GPDR P+ L SE P YLTGE PGDY +D GLS P+ F+K + E+IH+RWAM
Sbjct: 52 GPDR----PKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPETFAKNRELEVIHSRWAM 107
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EI 166
LGA G + PE K G G EAVWFK GA + L+Y G I + A+ A ++
Sbjct: 108 LGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQV 166
Query: 167 VLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 167 VLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMF 226
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 227 GFFVQAIVTGKGPIENLFDHLADPANNN 254
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 141/218 (64%), Gaps = 15/218 (6%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 42 VKSTPQSIWYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRE 97
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH+RWAMLGA G PE +K G G EAVWFK G+ + L+Y G I
Sbjct: 98 LEVIHSRWAMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQ 156
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+K
Sbjct: 157 SILAIWACQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELK 216
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
NGRLAMF M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 217 NGRLAMFPMFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/194 (52%), Positives = 132/194 (68%), Gaps = 6/194 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++ G
Sbjct: 27 ESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGV 86
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 87 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLG 145
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
++ D L+PGG FDPLGLA+ P+ FA LKVKE+KNGRLAMF+M GFF+ A VTG+GP+ENL
Sbjct: 146 EVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENL 205
Query: 242 AKHLSDPFANNLLT 255
A HL+DP NN +
Sbjct: 206 ADHLADPVNNNAWS 219
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/247 (46%), Positives = 148/247 (59%), Gaps = 11/247 (4%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSP--SGPDRRIFLPEGLLDRSEIPEY 71
+ L +P L PR L ++ + + +T S GPDR +L ++ P Y
Sbjct: 11 RVLAAKTPFLGHPRPSNAPLRDIAAAATGRITMSKELWYGPDRVKYLGP---FSAQTPSY 67
Query: 72 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 131
L GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+ E
Sbjct: 68 LRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKE 127
Query: 132 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLEDK 186
VWFK GA + L+Y G + + AV+ ++VL+G E YRI G+ +
Sbjct: 128 PVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGND 187
Query: 187 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 245
L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL
Sbjct: 188 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 247
Query: 246 SDPFANN 252
+DP ANN
Sbjct: 248 ADPVANN 254
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 145/243 (59%), Gaps = 21/243 (8%)
Query: 5 LLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLD 64
LLG+ VH ++ R+ S S S SP GPDR ++L
Sbjct: 7 LLGVGAGVHGEARVTM------RKATTKKVSASASTSPWY------GPDRVLYLGP---F 51
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE +
Sbjct: 52 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 111
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK GA + L+Y G + + A+ A +++L+G E YRI G
Sbjct: 112 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP 170
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 171 LGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 230
Query: 240 NLA 242
NLA
Sbjct: 231 NLA 233
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 117/259 (45%), Positives = 148/259 (57%), Gaps = 27/259 (10%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPL---------TKSSPSGPDRRIFLPEGLLD 64
T+ LSSP + K LSP+ S L T + P GP + +
Sbjct: 4 STMALSSPAFAGKAVK------LSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSERVK 57
Query: 65 -----RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
E P YLTG+ PGDYG+D GLS P+ F + + E+IH RWAMLGA G + PE
Sbjct: 58 YLGPFSGEPPSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWAMLGALGCVFPE 117
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYR 176
+ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YR
Sbjct: 118 LLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 176
Query: 177 ITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
+ L ED L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 177 VPGDGPLGEAEDLLYPGGSFDPLGLATDPVAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 234 GEGPVENLAKHLSDPFANN 252
G+GP+ENLA HL+DP NN
Sbjct: 237 GKGPLENLADHLADPVNNN 255
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 148/247 (59%), Gaps = 11/247 (4%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSP--SGPDRRIFLPEGLLDRSEIPEY 71
+ L +P L PR + ++ + + +T S GPDR +L ++ P Y
Sbjct: 11 RVLAAKTPFLGHPRPSNAPVRDIAAAATGRITMSKELWYGPDRVKYLGP---FSAQTPSY 67
Query: 72 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 131
L GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+ E
Sbjct: 68 LRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKE 127
Query: 132 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLEDK 186
VWFK GA + L+Y G + + AV+ ++VL+G E YRI G+ +
Sbjct: 128 PVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGLPGVGDGND 187
Query: 187 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 245
L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL
Sbjct: 188 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 247
Query: 246 SDPFANN 252
+DP ANN
Sbjct: 248 ADPVANN 254
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/208 (53%), Positives = 134/208 (64%), Gaps = 11/208 (5%)
Query: 51 GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
GPDR P+ L SE P YLTGE PGDYG+D +S P+ F+K + E+IH RWAM
Sbjct: 52 GPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAM 107
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EI 166
LGA G + PE K G G EAVWFK GA + L+Y G I + A+ A ++
Sbjct: 108 LGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQV 166
Query: 167 VLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
VL+G E YR+ G E D L PGG FDPLGLA DP+ A LKVKEIKNGRLAMF+M
Sbjct: 167 VLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMF 226
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 227 GFFVQAIVTGKGPIENLYDHLADPVANN 254
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 135/207 (65%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 5 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 61
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE +K G G EAVWFK GA + L+Y G + + A+ A ++V
Sbjct: 62 GALGCVFPEILSKNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVV 120
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D ++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M G
Sbjct: 121 LMGFIEGYRVGGGPLGEGLDIIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFG 180
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GPVENL H++DP NN
Sbjct: 181 FFVQAIVTGKGPVENLFDHIADPVNNN 207
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/193 (52%), Positives = 127/193 (65%), Gaps = 7/193 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G ++P YLTGE PGDYG+D GLS P+ F Y+ ELIHARWAML
Sbjct: 30 GPDRAKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAML 87
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIV 167
GA G + PE +K+G E+VWFK G+ + L+Y G + I + A++ ++V
Sbjct: 88 GALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSNLIHAQSILAILGCQVV 147
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D LHPG FDPLGLA DPD FA LKVKEIKNGRLAMF+M G
Sbjct: 148 LMGLIEAYRVNGGPLGEGLDPLHPGDKFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 207
Query: 226 FFLQAYVTGEGPV 238
F++QA VTG+GP+
Sbjct: 208 FYVQAIVTGKGPI 220
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 108/208 (51%), Positives = 134/208 (64%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 53 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 109
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ ++V
Sbjct: 110 GAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 169
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E YRI G+ + L+PGGP FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 170 LMGLVEGYRINGLPGVGEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 229
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 230 GFFVQAIVTGKGPLENLLDHLDNPVANN 257
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 108/208 (51%), Positives = 134/208 (64%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 53 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 109
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ ++V
Sbjct: 110 GAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 169
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E YRI G+ + L+PGGP FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 170 LMGLVEGYRINGLPGVGEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 229
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 230 GFFVQAIVTGKGPLENLLDHLDNPVANN 257
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/255 (49%), Positives = 156/255 (61%), Gaps = 23/255 (9%)
Query: 12 VHQTLLLSSPLLSSPRRKPPLLPSLSPSPSP----PLTKSSPS----GPDRRIFLPEGLL 63
+HQT +S L ++PRR L+ S+ KS+P GPDR P+ L
Sbjct: 6 LHQT---TSFLGTAPRRDD-LVRSVGDFGGRITMRRTVKSAPQSIWYGPDR----PKYLG 57
Query: 64 DRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 122
SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 58 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 117
Query: 123 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 179
K G G EAVWFK GA + L+Y G + + A+ A ++VL+G E YR+
Sbjct: 118 KNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFIEGYRVGG 176
Query: 180 G-LDLE-DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237
G LD D ++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M GFF+QA VTG+GP
Sbjct: 177 GPLDEGLDIIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 236
Query: 238 VENLAKHLSDPFANN 252
VENL L DP NN
Sbjct: 237 VENLFDQLRDPGNNN 251
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 132/209 (63%), Gaps = 11/209 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +FL P YL GE PGDYG+D GLS P+ F++ +A ELIH RWAML
Sbjct: 50 GPDRPLFLGP---FSGNTPSYLKGEFPGDYGWDTAGLSADPESFARNRALELIHGRWAML 106
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G I + AV A ++V
Sbjct: 107 GALGCITPELLQKYSRVTLKEPVWFKAGAQIFSDGGLDYLGNPNLIHAQSILAVWAVQVV 166
Query: 168 LVGGAEYYRITNGL---DLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G E YR TNGL L+PGG FDPLGLA DP+ A LKVKE+KNGRLAMF+M
Sbjct: 167 LMGAVEAYR-TNGLPGVGEGGDLYPGGKYFDPLGLADDPETLAELKVKELKNGRLAMFSM 225
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL++P +NN
Sbjct: 226 FGFFVQAIVTGKGPLENLLDHLANPVSNN 254
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 135/209 (64%), Gaps = 11/209 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 53 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 109
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ +++
Sbjct: 110 GALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVI 169
Query: 168 LVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 170 LMGLVEGFRI-NGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 228
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 229 FGFFVQAIVTGKGPLENLLDHLDDPVANN 257
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 135/209 (64%), Gaps = 11/209 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 52 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ +++
Sbjct: 109 GALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVI 168
Query: 168 LVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 169 LMGLVEGFRI-NGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 228 FGFFVQAIVTGKGPLENLLDHLDDPVANN 256
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 135/209 (64%), Gaps = 11/209 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 56 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 112
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ +++
Sbjct: 113 GALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVI 172
Query: 168 LVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 173 LMGLVEGFRI-NGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 231
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 232 FGFFVQAIVTGKGPLENLLDHLDDPVANN 260
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/200 (53%), Positives = 128/200 (64%), Gaps = 15/200 (7%)
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
+S P YLTGE PGDYG+D GLS P F Y+ E+IHARWAMLGA G I PE N
Sbjct: 102 QSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWAMLGALGCIFPELLNSA 161
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA------EIVLVGGAEYYRIT 178
G N VWFK G + + N ++Y G NLV A A ++VL+G +E YR
Sbjct: 162 GFNL---PVWFKAGGTIFE-NGIDYLGNP---NLVHAQSALAVLSVQVVLMGASEAYRFN 214
Query: 179 NGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 236
G E D L+PGG FDPLG AKDP + A LKVKEIKNGRLAM AMLG+++QA TG+G
Sbjct: 215 GGPLGEPADVLYPGGAFDPLGFAKDPSKAAELKVKEIKNGRLAMTAMLGYYVQALATGKG 274
Query: 237 PVENLAKHLSDPFANNLLTV 256
P+ENL++HL+DP NN V
Sbjct: 275 PIENLSEHLADPSKNNGFAV 294
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 147/245 (60%), Gaps = 10/245 (4%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLS-PSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLT 73
T++ ++P L + PL ++ S ++ GPDR +L ++ P YL
Sbjct: 12 TVVKATPFLGQTKNANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGP---FSAQTPSYLN 68
Query: 74 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 133
GE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E V
Sbjct: 69 GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPV 128
Query: 134 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLEDKLH 188
WFK G+ + L+Y G + + AV+ ++VL+G E +RI G+ + L+
Sbjct: 129 WFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLY 188
Query: 189 PGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 247
PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +
Sbjct: 189 PGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDN 248
Query: 248 PFANN 252
P ANN
Sbjct: 249 PVANN 253
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 132/217 (60%), Gaps = 15/217 (6%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P Y + PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 42 GPNRAKWL--GPYSENATPAYRLAKFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 99
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA------ 164
GA G I PE K G G EAVWFK GA + L+Y G +LV A
Sbjct: 100 GALGCITPELLAKSGTQFG-EAVWFKAGAQIFSEGGLDYLGNP---SLVHAQNIRRHPGR 155
Query: 165 -EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
+++L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF
Sbjct: 156 FKVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMF 215
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
+M GFF+QA VTG+GP++NL HLS+P NN +
Sbjct: 216 SMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFAT 252
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 132/207 (63%), Gaps = 9/207 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
G DR ++L G L E P YLTGE GDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 51 GADRVLYL--GPLS-GEPPSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIV 167
GA G + PE + G G EAVWFK G+ + L+Y G I + A+ ++V
Sbjct: 108 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVV 166
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
+G E YR+ G ++ D L+PGG DPLGLA DP+ FA LKVKEIKNGRLAM +M G
Sbjct: 167 FMGAVEGYRVAGGPLGEVVDPLYPGGSLDPLGLADDPEAFAELKVKEIKNGRLAMLSMFG 226
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+EN+ HL+DP NN
Sbjct: 227 FFVQAIVTGKGPLENITDHLADPVNNN 253
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 133/208 (63%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 51 GPDRLKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ +++
Sbjct: 108 GALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVI 167
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E YRI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 168 LMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 227
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL H+ +P ANN
Sbjct: 228 GFFVQAIVTGKGPLENLLDHIDNPVANN 255
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 130/209 (62%), Gaps = 18/209 (8%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
G DR +L G RS P YL GE PGDYG+D GLS P+ FS+Y+ E+IHARWAML
Sbjct: 68 GADRPGYL--GAFTRS--PSYLNGEFPGDYGWDTAGLSADPETFSRYREIEVIHARWAML 123
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAE 165
GA G ++PE ++ WF GA + + Y G +P N++ V +
Sbjct: 124 GALGIVVPELLDQTN-----HVAWFDAGATIFGPKGIQYLG--VPGLINAKNIIATVAVQ 176
Query: 166 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
++L+G E YR+ G E DK++PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 177 VILMGAIEGYRVNGGPAGEGLDKVYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSN 236
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ NL HL++P NN
Sbjct: 237 FGFFVQAIVTGKGPIANLNDHLANPTVNN 265
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 115/253 (45%), Positives = 152/253 (60%), Gaps = 20/253 (7%)
Query: 18 LSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLL---DR--------S 66
L +P + K P L + P+ + PL + + + RI + L DR +
Sbjct: 5 LMAPASRAVAGKTPFLGA-RPAVASPLRDVAAAASNGRISMSNELWYGPDRVKYLGPFSA 63
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YL+GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G + PE K+
Sbjct: 64 QTPSYLSGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVG 123
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIVLVGGAEYYRITNGLD- 182
E VWFK GA + L+Y G + + AV+ ++++L+G E +RI NGLD
Sbjct: 124 VEFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGSQVLLMGLVEGFRI-NGLDG 182
Query: 183 --LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 183 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 242
Query: 240 NLAKHLSDPFANN 252
NL HL DP ANN
Sbjct: 243 NLFDHLDDPVANN 255
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 116/246 (47%), Positives = 149/246 (60%), Gaps = 12/246 (4%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSP-PLTKSSPSGPDRRIFLPEGLLDRSEIPEYLT 73
T++ +P L + PL ++ S + GPDR +L ++ P YLT
Sbjct: 12 TVVKQTPFLGQRKSANPLRDVVAMGTSKFTMGNDLWYGPDRVKYLGP---FSAQTPSYLT 68
Query: 74 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 133
GE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E V
Sbjct: 69 GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRVDFKEPV 128
Query: 134 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL-DLED--KL 187
WFK G+ + L+Y G + + AV+ +IVL+G E +RI NGL D+ + L
Sbjct: 129 WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRI-NGLPDVGEGNDL 187
Query: 188 HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 246
+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL
Sbjct: 188 YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLD 247
Query: 247 DPFANN 252
+P ANN
Sbjct: 248 NPVANN 253
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 147/245 (60%), Gaps = 10/245 (4%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLS-PSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLT 73
T++ +P L + PL ++ +P + GPDR +L ++ P YLT
Sbjct: 12 TVVKQTPFLGQRKSANPLRDVVAMGTPKFTMGNDLWYGPDRVKYLGP---FSAQTPSYLT 68
Query: 74 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 133
GE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E V
Sbjct: 69 GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRVDFKEPV 128
Query: 134 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLED--KLH 188
WFK G+ + L+Y G + + AV+ +IVL+G E +RI D+ + L+
Sbjct: 129 WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPDVGEGNDLY 188
Query: 189 PGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 247
PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +
Sbjct: 189 PGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDN 248
Query: 248 PFANN 252
P ANN
Sbjct: 249 PVANN 253
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 133/208 (63%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAML
Sbjct: 47 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 103
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ ++V
Sbjct: 104 GALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 163
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E +RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 164 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMF 223
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 224 GFFVQAIVTGKGPLENLLDHLDNPVANN 251
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 133/208 (63%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAML
Sbjct: 47 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 103
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ ++V
Sbjct: 104 GALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 163
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E +RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 164 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMF 223
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 224 GFFVQAIVTGKGPLENLLDHLDNPVANN 251
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 106/208 (50%), Positives = 133/208 (63%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 51 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ +++
Sbjct: 108 GALGCITPEVLQKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVI 167
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E YRI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 168 LMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 227
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 228 GFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 105/217 (48%), Positives = 141/217 (64%), Gaps = 15/217 (6%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +LP+ L + +P+YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARWAML
Sbjct: 127 GPDRPKWLPDAFL--AGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAML 184
Query: 111 GAAGFIIPE--AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAE 165
GA G I PE A N +G E VWFK GAL+L+ +++Y G ++ ++ A+
Sbjct: 185 GALGCIFPEILAMN-YGVGL-EEPVWFKAGALVLNDKSIDYLGSPQLVHASSIIAIAAAQ 242
Query: 166 IVLVGGAEYYRIT----NGLDLEDKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAM 220
++L+GGAE YR + NG + DK+HPGG F+PL KD A LKVKEIKNGRLAM
Sbjct: 243 VLLMGGAEAYRASGVAPNGEEF-DKMHPGGYYFNPLKFGKDEADLAELKVKEIKNGRLAM 301
Query: 221 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
F+MLGF++QA TG GP++NL H +D N+ +
Sbjct: 302 FSMLGFYIQAATTGNGPLQNLVDHRADAANENIFKYV 338
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 134/209 (64%), Gaps = 11/209 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 45 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 101
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ +++
Sbjct: 102 GALGCITPEVLQKWVNVNFKEPVWFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGFQVL 161
Query: 168 LVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 162 LMGAVEGFRI-NGLDGVGNGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 220
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+EN HL +P ANN
Sbjct: 221 FGFFVQAIVTGKGPLENWLDHLDNPVANN 249
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 131/213 (61%), Gaps = 8/213 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R FL G S P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAML
Sbjct: 31 GPNRPQFL--GPFSGS-TPSYLKGEYPGDYGWDTAGLSADPETFARYRELEVIHARWAML 87
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE G EAVWFK GA + L+Y G I+ +V ++ ++
Sbjct: 88 GALGCVTPELLQNNGVASFGEAVWFKAGAQIFQEGGLDYLGNPSLIHAQSIVAVLLTQLT 147
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD F+ LKVKE+KNGRLAM +M G
Sbjct: 148 LMGLIEGYRVNGGPAGEGLDALYPGEAFDPLGLADDPDTFSELKVKELKNGRLAMVSMFG 207
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
FF+Q VT +GP+ENL HL+ P A N + +
Sbjct: 208 FFVQGIVTKKGPIENLNDHLASPDATNFWAIYA 240
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/206 (53%), Positives = 133/206 (64%), Gaps = 15/206 (7%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 VKSAPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH RWAMLGA G + PE +K G G EAVWFK GA + L+Y G I
Sbjct: 97 LEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQ 155
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A ++VL+G E YR+ G E D ++PGG FDPLGLA DPD FA LKVKEIK
Sbjct: 156 SILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIK 215
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVEN 240
NGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIEN 241
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 138/221 (62%), Gaps = 11/221 (4%)
Query: 39 SPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 98
SP + GPDR +L + + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 37 SPKYTMGNDLWYGPDRVKYLGPFSV---QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNR 93
Query: 99 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 156
A E+IH RWAMLGA G I PE K+ E VWFK G+ + L+Y G +
Sbjct: 94 ALEVIHGRWAMLGAFGCITPEVLQKWVRVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA 153
Query: 157 NLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVK 211
+ AV+ +++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVK
Sbjct: 154 QSILAVLGFQVILMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 212
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
EIKNGRLAMF+M GFF+QA VTG+GP+ENL H+ DP ANN
Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDDPVANN 253
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 134/209 (64%), Gaps = 11/209 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWAML
Sbjct: 52 GPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ +++
Sbjct: 109 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVI 168
Query: 168 LVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G E YRI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 169 LMGLVEGYRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 227
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 228 FGFFVQAIVTGKGPLENLLDHLDNPVANN 256
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 134/209 (64%), Gaps = 11/209 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWAML
Sbjct: 51 GPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ +++
Sbjct: 108 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVI 167
Query: 168 LVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G E YRI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 168 LMGLVEGYRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 226
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 227 FGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 134/209 (64%), Gaps = 11/209 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWAML
Sbjct: 53 GPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 109
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ ++V
Sbjct: 110 GALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 169
Query: 168 LVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 170 LMGLVEGFRI-NGLDGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSM 228
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 229 FGFFVQAIVTGKGPLENLLDHLDNPVANN 257
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 134/209 (64%), Gaps = 11/209 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 48 GPDRVKYLGP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 104
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ +++
Sbjct: 105 GALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVL 164
Query: 168 LVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 165 LMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 223
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 224 FGFFIQAIVTGKGPLENLLDHLDDPVANN 252
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 133/208 (63%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAML
Sbjct: 8 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 64
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ ++V
Sbjct: 65 GALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 124
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E +RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 125 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMF 184
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 185 GFFVQAIVTGKGPLENLLDHLDNPVANN 212
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 138/221 (62%), Gaps = 11/221 (4%)
Query: 39 SPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 98
SP + GPDR +L + + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 37 SPKYTMGNDLWYGPDRVKYLGPFSV---QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNR 93
Query: 99 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 156
A E+IH RWAMLGA G I PE K+ E VWFK G+ + L+Y G +
Sbjct: 94 ALEVIHGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA 153
Query: 157 NLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVK 211
+ AV+ +++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVK
Sbjct: 154 QSILAVLGFQVILMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 212
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
EIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 138/221 (62%), Gaps = 11/221 (4%)
Query: 39 SPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 98
SP + GPDR +L + + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 37 SPKYTMGNDLWYGPDRVKYLGPFSV---QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNR 93
Query: 99 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 156
A E+IH RWAMLGA G I PE K+ E VWFK G+ + L+Y G +
Sbjct: 94 ALEVIHGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHA 153
Query: 157 NLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVK 211
+ AV+ +++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVK
Sbjct: 154 QSILAVLGFQVILMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVK 212
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
EIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/194 (52%), Positives = 125/194 (64%), Gaps = 6/194 (3%)
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NK 123
+ + P TGE PGDYG+D GLS P+ F +Y+ ELIHAR +LGA G + PE ++
Sbjct: 69 QHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADE 128
Query: 124 FGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG 180
G G A+WFK GA + LNY G I N+V + ++VL+G E YR+ G
Sbjct: 129 DGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGG 188
Query: 181 LDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238
E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMFA LGFF+QA VTG+GP+
Sbjct: 189 PAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPI 248
Query: 239 ENLAKHLSDPFANN 252
ENL HL++P NN
Sbjct: 249 ENLTDHLANPAENN 262
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 134/209 (64%), Gaps = 11/209 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWAML
Sbjct: 48 GPDRVKYLGP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 104
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK G+ + L+Y G + + AV+ ++V
Sbjct: 105 GALGCITPEVLEKWLKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVV 164
Query: 168 LVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 165 LMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 223
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 224 FGFFVQAIVTGKGPLENLLDHLDDPVANN 252
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 150/250 (60%), Gaps = 15/250 (6%)
Query: 14 QTLLLSSPLLSSPRRKPPLLP--SLSPSPSPPLTKSSP--SGPDRRIFLPEGLLDRSEIP 69
+ ++ +P LS R P ++ + + +T + GPDR +L ++ P
Sbjct: 11 RAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGP---FSAQTP 67
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 129
YL GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G + PE K+
Sbjct: 68 SYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEF 127
Query: 130 PEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD---L 183
E VWFK G+ + L+Y G + + AV+ +++L+G E +RI NGLD
Sbjct: 128 KEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI-NGLDGVGE 186
Query: 184 EDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 242
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 187 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLF 246
Query: 243 KHLSDPFANN 252
HL DP ANN
Sbjct: 247 DHLDDPVANN 256
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 147/256 (57%), Gaps = 22/256 (8%)
Query: 16 LLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSG-------------PDRRIFLPEGL 62
L+ ++ S+ R P L + S PL P G PDR +L
Sbjct: 2 LMAATASSSTVLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGP-- 59
Query: 63 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 122
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE
Sbjct: 60 -FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 118
Query: 123 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 179
K+ E +WFK GA + L+Y G + + AV+ ++VL+G E +RI
Sbjct: 119 KWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 178
Query: 180 --GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 236
G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+G
Sbjct: 179 LPGVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 237 PVENLAKHLSDPFANN 252
P+ENL HL +P ANN
Sbjct: 239 PLENLLDHLDNPVANN 254
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 135/215 (62%), Gaps = 9/215 (4%)
Query: 43 PLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 102
P++ S GPDR +L E P YLTGE P G P P+ F+K + E+
Sbjct: 44 PVSSSPWYGPDRVKYLGP---FSGEPPSYLTGEFPVTTGGTPPVCQPDPETFAKNRELEV 100
Query: 103 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 160
IHARWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G + +
Sbjct: 101 IHARWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSIL 159
Query: 161 AVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 217
A+ A +++L+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGR
Sbjct: 160 AIWACQVILMGAVEGYRVAGGPLGEITDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR 219
Query: 218 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
LAMF+M GF++QA VTG+GP+ENLA HL+DP NN
Sbjct: 220 LAMFSMFGFYVQAIVTGKGPLENLADHLADPVNNN 254
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 132/208 (63%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 52 GPDRVKYLGP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ ++V
Sbjct: 109 GALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 168
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E +RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 169 LMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 229 GFFVQAIVTGKGPLENLLDHLDNPVANN 256
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 133/208 (63%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAML
Sbjct: 50 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 106
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK G+ + L+Y G + + AV+ ++V
Sbjct: 107 GALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 166
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E +RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 167 LMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 226
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL H+ +P ANN
Sbjct: 227 GFFVQAIVTGKGPLENLLDHIDNPVANN 254
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 133/208 (63%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAML
Sbjct: 48 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 104
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK G+ + L+Y G + + AV+ ++V
Sbjct: 105 GALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 164
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E +RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 165 LMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 224
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL H+ +P ANN
Sbjct: 225 GFFVQAIVTGKGPLENLLDHIDNPVANN 252
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 132/208 (63%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE GDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 51 GPDRVKYLGP---FSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ +++
Sbjct: 108 GALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVI 167
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E YRI G+ + L+PGG FDPLGLA DP FA L+VKEIKNGRLAMF+M
Sbjct: 168 LMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELRVKEIKNGRLAMFSMF 227
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 228 GFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 132/208 (63%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAML
Sbjct: 48 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 104
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK G+ + L+Y G + + AV+ ++V
Sbjct: 105 GAFGCITPEVLEKWVKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVV 164
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E +RI G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMF+M
Sbjct: 165 LMGLVESFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTLAELKVKEIKNGRLAMFSMF 224
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 225 GFFVQAIVTGKGPLENLLDHLDNPVANN 252
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 132/208 (63%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAML
Sbjct: 54 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAML 110
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK G+ + L+Y G + + AV+ +++
Sbjct: 111 GALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVL 170
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E +RI G+ + L+PG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 171 LMGLVEGFRINGLPGVGEGNNLYPGDQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMF 230
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 231 GFFVQAIVTGKGPLENLLDHLDDPVANN 258
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/183 (53%), Positives = 124/183 (67%), Gaps = 6/183 (3%)
Query: 75 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 134
E PGDYG+D GLS P+ FSK + E+IH+RWAMLGA G + PE + G G EAVW
Sbjct: 1 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVW 59
Query: 135 FKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHP 189
FK G+ + L+Y G + + V A +++L+G E YRI G ++ D L+P
Sbjct: 60 FKAGSQIFSEGGLDYLGNPSLVHAQSILTVWATQVILMGAVEGYRIAGGPLGEVVDPLYP 119
Query: 190 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 249
GG FDPLGLA+ P+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 120 GGSFDPLGLAEIPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 179
Query: 250 ANN 252
NN
Sbjct: 180 NNN 182
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 133/208 (63%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 15 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 71
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E +WFK GA + L+Y G + + AV+ ++V
Sbjct: 72 GALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 131
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E +RI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 132 LMGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 191
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 192 GFFVQAIVTGKGPLENLLDHLDNPVANN 219
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 137/221 (61%), Gaps = 9/221 (4%)
Query: 37 SPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 96
+ P P + S G DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 36 AAKPKPARSGSPWYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAK 92
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--I 154
+ E+IH RWA+ G + PE + G G E VWFK G+ + L++ G +
Sbjct: 93 NRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLV 151
Query: 155 PINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVK 211
+ A+ A ++VL+G E Y + G ++ D L+ GG FDPLGL DP++FA LKVK
Sbjct: 152 HAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVK 211
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
EIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 212 EIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/205 (52%), Positives = 129/205 (62%), Gaps = 31/205 (15%)
Query: 51 GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAM
Sbjct: 52 GPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 107
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 169
LGA G + PE K G G EAVWFK ++A +++VL+
Sbjct: 108 LGALGCVFPELLAKTGVKFG-EAVWFKA---------------------IWA--SQVVLM 143
Query: 170 GGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct: 144 GLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 203
Query: 228 LQAYVTGEGPVENLAKHLSDPFANN 252
+QA VTG+GP+ENL HL+DP ANN
Sbjct: 204 VQAIVTGKGPIENLFDHLADPTANN 228
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 137/208 (65%), Gaps = 11/208 (5%)
Query: 51 GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
GPDR P+ L SE P YLTGE PGDYG++ G+S P+ F++ + E+IH+RWAM
Sbjct: 15 GPDR----PKYLGPFSEQTPSYLTGEFPGDYGWETAGVSADPETFARNRELEVIHSRWAM 70
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EI 166
LGA G + PE K G G EAVWFK GA + L+Y G + + A+ A ++
Sbjct: 71 LGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQV 129
Query: 167 VLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
VL+G E Y + G E DK++PGG F+PLGLA DPD A LKVKE+KNGRLAMF+M
Sbjct: 130 VLMGFVEGYGVGGGPLGEGLDKVYPGGAFEPLGLADDPDTAAELKVKELKNGRLAMFSMF 189
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 190 GFFVQAIVTGKGPIENLFDHVADPVANN 217
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/208 (49%), Positives = 131/208 (62%), Gaps = 9/208 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 51 GPDRLKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 107
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ +++
Sbjct: 108 GALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVI 167
Query: 168 LVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E YRI G+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 168 LMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 227
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+G +ENL H+ +P ANN
Sbjct: 228 RFFVQAIVTGKGSLENLLDHIDNPVANN 255
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/181 (55%), Positives = 122/181 (67%), Gaps = 6/181 (3%)
Query: 77 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 136
PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE K G G EAVWFK
Sbjct: 4 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFK 62
Query: 137 TGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGG 191
GA + L+Y G I + A+ A ++VL+G E YR+ G E D L+PGG
Sbjct: 63 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGG 122
Query: 192 PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 251
FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP AN
Sbjct: 123 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTAN 182
Query: 252 N 252
N
Sbjct: 183 N 183
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 147/253 (58%), Gaps = 26/253 (10%)
Query: 14 QTLLLSSPLLSSPRRK-PPLLPSL-----SPSPSPPLTKSSPS---GPDRRIFLPEGLLD 64
T+ LSS L+ K P P L S + P T SS S GPDR +L
Sbjct: 4 STMALSSSSLAGQAMKLAPSTPELGVGRVSMRKTAPKTVSSGSPWYGPDRVKYLGP---F 60
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
E P YLTGE GLS P+ F+K + E+IH+RWAMLGA G + PE +
Sbjct: 61 SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARN 112
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG- 180
G G EAVWFK G+ + L+Y G I + A+ A +++L+G E YRI G
Sbjct: 113 GVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP 171
Query: 181 -LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
++ D ++PGG FDPLGLA DP+ A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 172 LGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 231
Query: 240 NLAKHLSDPFANN 252
NLA HL+DP NN
Sbjct: 232 NLADHLADPVNNN 244
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 134/209 (64%), Gaps = 11/209 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL ++ P YL GE PGDYG+D GLS P+ F++ +A ELIH RWAML
Sbjct: 47 GPDRVKFLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAML 103
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE +K+ E VWFK G+ + L+Y G + + A+ A +++
Sbjct: 104 GALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVI 163
Query: 168 LVGGAEYYRITNGL-DLED--KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G E YRI NGL D+ + L+PGG FDPLG A DP+ A LKVKEIKNGRLAMF+M
Sbjct: 164 LMGLVEGYRI-NGLPDVGEGGDLYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFSM 222
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 223 FGFFVQAIVTGKGPLENLFDHLDNPVVNN 251
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 134/209 (64%), Gaps = 11/209 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL ++ P YL GE PGDYG+D GLS P+ F++ +A ELIH RWAML
Sbjct: 47 GPDRVKFLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAML 103
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE +K+ E VWFK G+ + L+Y G + + A+ A +++
Sbjct: 104 GALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVI 163
Query: 168 LVGGAEYYRITNGL-DLED--KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G E YRI NGL D+ + L+PGG FDPLG A DP+ A LKVKEIKNGRLAMF+M
Sbjct: 164 LMGLVEGYRI-NGLPDVGEGGDLYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFSM 222
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 223 FGFFVQAIVTGKGPLENLFDHLDNPVVNN 251
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 125/199 (62%), Gaps = 9/199 (4%)
Query: 45 TKSSPSGPDRRIFLPE--GLLD--RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
T+ S PD + PE L + P YLTGE PGDYG+D GLS P+ F +Y+
Sbjct: 26 TQKKSSAPDSVWYGPERPQFLGPFSGDCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQ 85
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 158
ELIHARWAMLGA G + PE K+G E+VWFK G+ + L+Y G + +
Sbjct: 86 ELIHARWAMLGALGCVTPEILAKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSSLVHAQY 145
Query: 159 VFAVI-AEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 215
+ A++ +++L+G E YR+ G E D L+PGG FDPLGLA DPD FA LKVKEIKN
Sbjct: 146 ILAILGCQVLLMGAIEAYRVNGGPLGEGLDPLYPGGQFDPLGLADDPDTFAELKVKEIKN 205
Query: 216 GRLAMFAMLGFFLQAYVTG 234
GRLAMF+M GF++QA VTG
Sbjct: 206 GRLAMFSMFGFYVQALVTG 224
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/182 (53%), Positives = 125/182 (68%), Gaps = 7/182 (3%)
Query: 77 PGDYGYDPF-GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 135
PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWF
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWF 59
Query: 136 KTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPG 190
K GA + L+Y G + + A+ A +++L+G E YRI G ++ D L+PG
Sbjct: 60 KAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPG 119
Query: 191 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 250
G FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 120 GSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 179
Query: 251 NN 252
NN
Sbjct: 180 NN 181
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 11/209 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PG+YG+D GLS P+ F+K +A E+IH RWAML
Sbjct: 5 GPDRVKYLGP---FSVQTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAML 61
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK G+ + L+Y G + + AV+ +++
Sbjct: 62 GAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVI 121
Query: 168 LVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G E RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M
Sbjct: 122 LMGLVEGLRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSM 180
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 181 FGFFVQAIVTGKGPLENLLDHLDNPVANN 209
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 140/238 (58%), Gaps = 37/238 (15%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R+++LP GLL ++++P YL G + GDYG+DP GL Y+ E++HARWAML
Sbjct: 95 GPNRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GKVKDYRVAEILHARWAML 153
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIAEIVL 168
G +IPEA N P VW +TG + LDG T G++ + ++A I ++VL
Sbjct: 154 AVPGVVIPEALNI------PGGVWTETGKVFLDGET----GRDSILEFWPIYAAI-QVVL 202
Query: 169 VGGAEYYRIT-------------------NGLDLEDKLHPGGPFDPLGLAKDPDQFALLK 209
+GGAE +R NGLD ++PGGP D +AK+P +LK
Sbjct: 203 MGGAEKFRQDGVGPAGFVPFKGKFEESAFNGLD---PVNPGGPLDFFDVAKNPQDLQILK 259
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
VKEIKNGRLAM AMLG F+Q VTGEGP N KH+++PF N +T+ SG +R P L
Sbjct: 260 VKEIKNGRLAMIAMLGVFVQGAVTGEGPAANWGKHVANPFGYNFVTITSG-IDRTPVL 316
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 127/205 (61%), Gaps = 18/205 (8%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ PEYLTGE PGDYG+D GL + P F+ Y +E++H RWAML A G ++PE + FG
Sbjct: 110 DYPEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGL 169
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 179
E VW+K G L G+ L+Y G IP +V I + +L+ G EY R
Sbjct: 170 VHFVEPVWWKVGYAKLQGDNLDYLG--IPGFRIAGGQGVVVIAICQALLMVGPEYARYCG 227
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE D +PGGP FDPLGL+KDP F LKVKEIKNGRLAM A GF++QA
Sbjct: 228 IEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWFGFYIQA 287
Query: 231 YVTGEGPVENLAKHLSDPFANNLLT 255
VTG+GPV+NL +HLSDP NN+L+
Sbjct: 288 AVTGKGPVQNLVEHLSDPLNNNILS 312
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 129/207 (62%), Gaps = 18/207 (8%)
Query: 65 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
R + PE+L GE PGDYG+D GL + P F+ Y +E++H RWAML A G ++PE + F
Sbjct: 103 RYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLF 162
Query: 125 GANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRI 177
G E VW+K G L G+TL+Y G IP ++ I +++L+ G EY R
Sbjct: 163 GIVHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGIIVIAICQVLLMVGPEYARY 220
Query: 178 TNGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
LE D +PGG FDPLGL+KDP F KVKEIKNGRLAM A +GF++
Sbjct: 221 CGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEEFKVKEIKNGRLAMVAWIGFYI 280
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLT 255
QA VTG+GPV+NLA+HLSDP NN+L+
Sbjct: 281 QAAVTGKGPVQNLAEHLSDPLHNNILS 307
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/189 (50%), Positives = 122/189 (64%), Gaps = 8/189 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR FL + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 39 GPDRPQFLGP---FSGDCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAML 95
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AEIV 167
GA G + PE +K+G E+VWFK G+ + L+Y G + + + A++ +++
Sbjct: 96 GALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSNLVHAQSILAILGCQVL 155
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M G
Sbjct: 156 LMGAIEAYRVNGGPLGEGLDPLYPGDKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFG 215
Query: 226 FFLQAYVTG 234
F++QA VTG
Sbjct: 216 FYVQAVVTG 224
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/187 (53%), Positives = 123/187 (65%), Gaps = 6/187 (3%)
Query: 72 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 131
LTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 132 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLEDK 186
VWFK GA + L+Y G + + AV+ ++VL+G E +RI G+ +
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNN 120
Query: 187 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 245
L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL
Sbjct: 121 LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 180
Query: 246 SDPFANN 252
+P ANN
Sbjct: 181 DNPVANN 187
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 125/192 (65%), Gaps = 9/192 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAML
Sbjct: 25 GPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAML 81
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK GA + L+Y G + + A+ A +++
Sbjct: 82 GALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVI 140
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M G
Sbjct: 141 LMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 200
Query: 226 FFLQAYVTGEGP 237
FF+QA VTG+GP
Sbjct: 201 FFVQAIVTGKGP 212
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 128/205 (62%), Gaps = 18/205 (8%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ PE+LTGE PGDYG+D GL + P F+ Y +E++H RWAML A G +IPE + FG
Sbjct: 109 DYPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWAMLAALGVVIPELLDLFGL 168
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 179
E VW+K G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 169 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVIVIAICQALLMVGPEYARYCG 226
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 227 IEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQA 286
Query: 231 YVTGEGPVENLAKHLSDPFANNLLT 255
VTG+GPV+NL +HLSDP NN+L+
Sbjct: 287 AVTGKGPVQNLVEHLSDPLHNNILS 311
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/180 (53%), Positives = 122/180 (67%), Gaps = 6/180 (3%)
Query: 78 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 137
GDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE K G G EAVWFK
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFG-EAVWFKA 59
Query: 138 GALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGP 192
GA + L+Y G + + A+ A ++VL+G E YR+ G E DK++PGG
Sbjct: 60 GAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKVYPGGA 119
Query: 193 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
FDPLGLA DPD A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 120 FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 179
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 127/205 (61%), Gaps = 18/205 (8%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P +LTGE PGDYG+D GL + P F+ Y +E++H RWAML A G ++PE + FG
Sbjct: 116 EYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGV 175
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 179
E VW+K G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 176 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVIVIAICQALLMVGPEYARYCG 233
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 234 IEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQA 293
Query: 231 YVTGEGPVENLAKHLSDPFANNLLT 255
VTG+GP++NL +HLSDP NN+L+
Sbjct: 294 AVTGKGPIQNLVEHLSDPLHNNILS 318
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 100/194 (51%), Positives = 124/194 (63%), Gaps = 9/194 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
G DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAML
Sbjct: 52 GSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAML 108
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++V
Sbjct: 109 GALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVV 167
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 168 LMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 227
Query: 226 FFLQAYVTGEGPVE 239
FF+QA VTG P
Sbjct: 228 FFVQAIVTGGEPCR 241
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 134/213 (62%), Gaps = 18/213 (8%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P+YLTGE+PGDYG+D GLS+ P F K+ +E++HARWAML + G ++PE + FGA
Sbjct: 128 DYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGA 187
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 179
E +W++ G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 188 FHFTEPIWWRVGYSKLKGDTLDYLG--IPGLHLAGSQGVIVIAICQAILMVGPEYARYCG 245
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE D +PGG FDPL L+KD + F LKVKEIKNGRLAM A LGF+ QA
Sbjct: 246 IEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQA 305
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAER 263
+TG+GPV+NL H++DPF NN L++++ + R
Sbjct: 306 ALTGKGPVQNLLNHIADPFHNNFLSLLNSSFSR 338
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 127/203 (62%), Gaps = 14/203 (6%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ PE+L GE PGDYG+D GL + P F+ Y +E++H RWAML A G +IPE + FG
Sbjct: 113 DYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVIPELLDLFGI 172
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFG-KNIPI----NLVFAVIAEIVLVGGAEYYRITNGL 181
E VW+K G L G+TL+Y G + I ++ I + +L+ G EY R
Sbjct: 173 VHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVIAICQALLMVGPEYARYCGIE 232
Query: 182 DLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF+LQA V
Sbjct: 233 ALEPLGIYLPGDINYPGGALFDPLGLSKDPVGFEELKVKEIKNGRLAMVAWLGFYLQAAV 292
Query: 233 TGEGPVENLAKHLSDPFANNLLT 255
TG+GPV+NL +HLSDP NN+L+
Sbjct: 293 TGKGPVQNLVEHLSDPLHNNILS 315
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 133/233 (57%), Gaps = 28/233 (12%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR+++LP GLL ++++P YL G + GDYG+DP GL +Y+ E+IHARWAML
Sbjct: 104 GPDRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GAIKQYRVAEVIHARWAML 162
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
G +IPEA P VW +TG + LDG T F PI VFA + ++ L+
Sbjct: 163 AIPGVVIPEALGL------PGGVWTETGKVFLDGETGRPFFLENPI--VFAAV-QVALMA 213
Query: 171 GAEYYRIT----------------NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
G E +R + + D ++PGGP D +A +P ALLKVKEIK
Sbjct: 214 GVEQFRSSGEGPAGFVPFKGKFDESAFKGLDPINPGGPLDFFNVASNPQDLALLKVKEIK 273
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
NGRLAM AMLG F+Q TGEGP N KH++DPF N +T+ + +R P L
Sbjct: 274 NGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFVTLQA--VDRTPVL 324
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/189 (54%), Positives = 123/189 (65%), Gaps = 10/189 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR ++L G L + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 48 GPDRGLWL--GPLSGT-TPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAML 104
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K G E VWFK GA + L+Y G I + A +A +++
Sbjct: 105 GALGCVTPELLAKNGTPI-AEPVWFKAGAQIFQEGGLDYLGNAGLIHAQSILATLAVQVI 163
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E YR+ G E DKLHPGG FDPLGLA+DPD FA LKVKEIKNGRLAMF+M
Sbjct: 164 LMGAIEGYRVNGGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNGRLAMFSMF 223
Query: 225 GFFLQAYVT 233
GFF+QA VT
Sbjct: 224 GFFVQAIVT 232
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 127/205 (61%), Gaps = 18/205 (8%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P +LTGE PGDYG+D GL + P F+ Y +E++H RWAML A G ++PE + FG
Sbjct: 40 EYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGV 99
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 179
E VW+K G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 100 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVIVIAICQALLMVGPEYARYCG 157
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 158 IEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQA 217
Query: 231 YVTGEGPVENLAKHLSDPFANNLLT 255
VTG+GP++NL +HLSDP NN+L+
Sbjct: 218 AVTGKGPIQNLVEHLSDPLHNNILS 242
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 133/213 (62%), Gaps = 18/213 (8%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P+YLTGE+PGDYG+D GLS+ P F K+ +E++HARWAML + G ++PE + FGA
Sbjct: 128 DYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGA 187
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 179
E +W++ G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 188 FHFTEPIWWRVGYSKLKGDTLDYLG--IPGLHLAGSQGVIVIAICQAILMVGPEYARYCG 245
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE D +PGG FDPL L+KD F LKVKEIKNGRLAM A LGF+ QA
Sbjct: 246 IEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQA 305
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGNAER 263
+TG+GPV+NL H++DPF NN L++++ + R
Sbjct: 306 ALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR 338
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 128/205 (62%), Gaps = 18/205 (8%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ PE+L GE PGDYG+D GL + P F+ Y +E++H RWAMLGA G ++PE + FG
Sbjct: 1 DYPEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGI 60
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 179
E VW+K G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 61 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGLRIAGGQGIIVIAICQALLMVGPEYARYCG 118
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 119 IEALEPLGIYLPGDLNYPGGALFDPLGLSKDPVAFEELKVKEIKNGRLAMVAWLGFYVQA 178
Query: 231 YVTGEGPVENLAKHLSDPFANNLLT 255
VTG+GPV+NL +HLSDP NN+L+
Sbjct: 179 AVTGKGPVQNLIEHLSDPLHNNILS 203
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 124/202 (61%), Gaps = 14/202 (6%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE+PGDYG+D GL + P KY +E++HARWAML + G +IPE + GA
Sbjct: 120 EYPSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARWAMLASVGALIPEILDLLGA 179
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNI-----PINLVFAVIAEIVLVGGAEYYRITNGL 181
E VW++ G L G+TL+Y G +V I + +L+ G EY R
Sbjct: 180 FHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGIE 239
Query: 182 DLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
LE D +PGG FDPL L+ DP+ F LKVKEIKNGRLAM A LGF++QA +
Sbjct: 240 ALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAAL 299
Query: 233 TGEGPVENLAKHLSDPFANNLL 254
TG+GPV+NL H+SDPF NNLL
Sbjct: 300 TGKGPVQNLIDHISDPFHNNLL 321
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 114/176 (64%), Gaps = 11/176 (6%)
Query: 86 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 145
GLS P F++Y+ E+IHARWAMLGA G I PE K G G EAVWFK GA +
Sbjct: 2 GLSADPQTFARYREIEVIHARWAMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIFQDG 60
Query: 146 TLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL------DLEDKLHPGGPFDPL 196
LNY G + + A +A +++L+G AE YR G DL D L+PGG FDPL
Sbjct: 61 GLNYLGNESLVHAQSILATLAVQVLLMGAAESYRANGGAPGGFGEDL-DSLYPGGAFDPL 119
Query: 197 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GLA DPD A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ NL HLSDP NN
Sbjct: 120 GLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPTGNN 175
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 126/205 (61%), Gaps = 18/205 (8%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P +LTGE PGDYG+D GL + P F+ Y +E++H RWAML A G ++PE + F
Sbjct: 116 EYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFEV 175
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 179
E VW+K G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 176 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVIVIAICQALLMVGPEYARYCG 233
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 234 IEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQA 293
Query: 231 YVTGEGPVENLAKHLSDPFANNLLT 255
VTG+GP++NL +HLSDP NN+L+
Sbjct: 294 AVTGKGPIQNLVEHLSDPLHNNILS 318
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 106/207 (51%), Positives = 126/207 (60%), Gaps = 22/207 (10%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F AML
Sbjct: 52 GPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETF-------------AML 95
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G + PE K G G EAVWFK GA + L+Y G I + A+ A ++V
Sbjct: 96 GALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVV 154
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M G
Sbjct: 155 LMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 214
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 215 FFVQAIVTGKGPIENLFDHLADPTANN 241
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 127/216 (58%), Gaps = 28/216 (12%)
Query: 40 PSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
P P + S G DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 39 PKPAASGSPWYGADRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 95
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I
Sbjct: 96 LEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQ 154
Query: 158 LVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
+ A+ A ++VL+G E YRI A DP+ FA LKVKEIKNG
Sbjct: 155 SILAIWACQVVLMGAVEGYRI---------------------ADDPEAFAELKVKEIKNG 193
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
RLAMF+M GFF+QA VTG+GPVENLA HL+DP NN
Sbjct: 194 RLAMFSMFGFFVQAIVTGKGPVENLADHLADPVNNN 229
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 133/234 (56%), Gaps = 28/234 (11%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP R+++LP GLL ++IP YL G++ GDYG+DP GL +Y+ E+IHARWAML
Sbjct: 69 GPQRKLYLPSGLLTTADIPSYLDGKLAGDYGFDPLGLGAD-GAIKQYRVAEVIHARWAML 127
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
G +IPEA N G + W +TG + L+G+T FG + L AV IVL+G
Sbjct: 128 AVPGIVIPEALNIAGGD------WRETGKVFLEGST-GRFGP-AELWLGIAVAPLIVLMG 179
Query: 171 GAEYYRIT---------------NGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEI 213
GAE +R G D D ++PGGP D +A P +LKVKEI
Sbjct: 180 GAEKFRSDPASAPSGFVPFKGSFTGKDFAKLDPINPGGPLDFYNVAATPQDLEILKVKEI 239
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
KNGRLAM AMLG F+Q TGEGP N KH++DPF N +T+ + +R P L
Sbjct: 240 KNGRLAMIAMLGVFVQGATTGEGPAANWGKHVADPFGYNFVTLNA--VDRTPVL 291
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 173 bits (438), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 96/183 (52%), Positives = 116/183 (63%), Gaps = 26/183 (14%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP R +FLP GLL+RS++P YLTG++ GDYGYDP GL K P+ KY+A+ELIHARWAML
Sbjct: 66 GPSRVLFLPSGLLERSDVPAYLTGDLAGDYGYDPLGLGKDPEQVQKYRAFELIHARWAML 125
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA 164
AAG IIPE GA+ A WF+TGA +L+G TLNYF +P +V FA++A
Sbjct: 126 AAAGMIIPEGLAANGADI-KGATWFETGAEMLNGGTLNYFA--VPWAIVSNPLPLFAIVA 182
Query: 165 -EIVLVGGAEYYRITNG----------------LDLEDKLHPGGPFDPLGLAKDPDQFAL 207
E+ L+G AE YR T D D LHPGGPFDPLGLA DP+ F
Sbjct: 183 VEVGLMGAAENYRRTGTGPKGYSPGVGNFESSVFDGLDSLHPGGPFDPLGLADDPEVFQE 242
Query: 208 LKV 210
LKV
Sbjct: 243 LKV 245
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 98/207 (47%), Positives = 125/207 (60%), Gaps = 18/207 (8%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P++L G PGDYG+D GL K P F K+ +E++HARWAML A G +IPE KF
Sbjct: 114 DYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFG 173
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 179
E+VW++ G L+G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 174 VNFAESVWWRVGYAKLEGDTLDYLG--IPGLHIVGAQGIIVIAICQFLLMVGPEYARYCG 231
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 232 IEALEPLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQA 291
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVI 257
VT +GP+ENL HL DP NN +T I
Sbjct: 292 LVTKKGPLENLLDHLQDPLHNNAVTSI 318
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 132/209 (63%), Gaps = 20/209 (9%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YL+GE+PGDYG+D GL++ P F +Y +E++HARWAML A G +IPE + GA
Sbjct: 131 QYPTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARWAMLAALGALIPEVLDLSGA 190
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA------VIA--EIVLVGGAEYYRIT 178
E VW++ G L G+TL+Y G IP L FA VIA + +L+ G EY R
Sbjct: 191 FHFIEPVWWRVGYSKLKGDTLDYLG--IP-GLHFAGGQGVLVIAFCQAILMVGPEYARYC 247
Query: 179 NGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 229
LE D +PGG FDPL L+KDP F LKVKEIKNGRLAM A LGF++Q
Sbjct: 248 GIEALEPLGIYLPGDINYPGGILFDPLNLSKDPVSFEELKVKEIKNGRLAMVAWLGFYIQ 307
Query: 230 AYVTGEGPVENLAKHLSDPFANNLLTVIS 258
A +TG+GPVENL +H+SDP NNL + +
Sbjct: 308 AALTGKGPVENLVEHISDPLHNNLFSTLK 336
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/207 (48%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P++L G PGDYG+D GL K P F K+ +E++HARWAML A G +IPE KF
Sbjct: 114 DYPDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFG 173
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-INLVFA------VIAEIVLVGGAEYYRITN 179
E+VW++ G L+G+TL+Y G IP +++V A I + +L+ G EY R
Sbjct: 174 VKFAESVWWRVGYAKLEGDTLDYLG--IPGLHIVGAQGILVIAICQFLLMVGPEYARYCG 231
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 232 IEALEPLGIYLPGDINYPGGVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQA 291
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVI 257
VT +GP+ENL HL DP NN +T I
Sbjct: 292 LVTKKGPLENLLDHLQDPLHNNAVTSI 318
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 134/228 (58%), Gaps = 23/228 (10%)
Query: 50 SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
SG R + P +E P +LTGE PGD G+DPFGL+K P DF+K++ E+ H RWAM
Sbjct: 147 SGEKRPTWFP-----GAEAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAM 201
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEI 166
LG G ++PE F G P W+ A + + + L+Y G + N+ F ++ +
Sbjct: 202 LGLVGCLVPEVFGNLGIAQLP--AWYDA-ATVANTSNLDYLGNPNLVHASNVSFIALSTL 258
Query: 167 VLVGGAEYYRITNGLDLEDK-----LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
+L+G E +R L E K +PGGPFDPL L P+ LK+KEIKNGRLAM
Sbjct: 259 LLMGPVEAWRWNGALASEAKSAERTTYPGGPFDPLKLGASPE----LKLKEIKNGRLAMV 314
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI---SGNAERAPT 266
M GF+ Q+YVTGEGP+ NLA HL+DP NNLL + + + E+ PT
Sbjct: 315 GMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTVAMFAASGEKRPT 362
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 128/221 (57%), Gaps = 28/221 (12%)
Query: 50 SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
SG R + P +E P +LTGE PGD G+DP GL+K P+DF+K + E+ H RWAM
Sbjct: 356 SGEKRPTWFP-----GAEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAM 410
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-------NIPINLVFAV 162
LG G ++PE F G P W++ GA+ G +L+Y G N+P L+F
Sbjct: 411 LGLVGCLVPEVFGNLGIAQLP--AWYEAGAVANTG-SLDYLGNPNLVHASNVP--LIF-- 463
Query: 163 IAEIVLVGGAEYYRITNGLDLEDK-----LHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 217
++L E +R + E K +PGGPFDPL L P+ LK+KEIKNGR
Sbjct: 464 FTTLLLFLPIEAWRWNGQIAPEAKSAERTTYPGGPFDPLKLGASPE----LKLKEIKNGR 519
Query: 218 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
LAM M GF+ Q+YVTGEGP+ NLA HL+DP NNLL ++
Sbjct: 520 LAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTVA 560
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 89/164 (54%), Gaps = 26/164 (15%)
Query: 118 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-------NIPINLVFAVIAEIVLVG 170
PE F G P W++ GA+ G +L+Y G N+P L+F ++L
Sbjct: 1 PEVFGNLGIAQLP--AWYEAGAVANTG-SLDYLGNPNLVHASNVP--LIF--FTTLLLFL 53
Query: 171 GAEYYRITNGL-----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
E +R + E +PGGPFDPL L P+ LK+KEIKNGRLAM M G
Sbjct: 54 PIEAWRWNGQIAPDAKSKEWTTYPGGPFDPLKLGASPE----LKLKEIKNGRLAMVGMFG 109
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI---SGNAERAPT 266
F+ Q+YVTGEGP+ NLA HL+DP NNLL + + + E+ PT
Sbjct: 110 FWAQSYVTGEGPLANLAAHLADPAHNNLLNTVAMFAASGEKRPT 153
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 116/172 (67%), Gaps = 6/172 (3%)
Query: 86 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 145
GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 4 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEG 62
Query: 146 TLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAK 200
L+Y G + + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA
Sbjct: 63 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLAD 122
Query: 201 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 123 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 174
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/184 (50%), Positives = 117/184 (63%), Gaps = 9/184 (4%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G L ++P YLTGE+PGDYG+D GL P ++Y+ E+IHARWAML
Sbjct: 154 GPDRAKWL--GPL-TGQVPAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAML 210
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE G G AVW+K GA + + LNY G I+ +V ++ +
Sbjct: 211 GALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 270
Query: 168 LVGGAEYYRITNGL---DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
++G E YR G D D+L+PGGPFDPLGLA DPD FA LKVKE+KNGRLAM AML
Sbjct: 271 IMGAVEGYRYGGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAELKVKEVKNGRLAMVAML 330
Query: 225 GFFL 228
GF++
Sbjct: 331 GFYV 334
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 125/199 (62%), Gaps = 10/199 (5%)
Query: 41 SPPLTKSSP-SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
+ P++ SP G DR +L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 40 AKPVSSGSPWYGTDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 96
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 157
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G +
Sbjct: 97 LEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQ 155
Query: 158 LVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ A+ A +++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIK
Sbjct: 156 SILAIWASQVILMGAVEGYRIGGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIK 215
Query: 215 NGRLAMFAMLGFFLQAYVT 233
NGRLAMF+M GFF+QA VT
Sbjct: 216 NGRLAMFSMFGFFVQAIVT 234
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 116/175 (66%), Gaps = 6/175 (3%)
Query: 83 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 142
D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ +
Sbjct: 1 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIF 59
Query: 143 DGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLG 197
L+Y G I + A+ A +++L+G E YRI G ++ D L+PGG FDPLG
Sbjct: 60 SEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 119
Query: 198 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
LA DPD FA LKVKEIKNG LAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 120 LADDPDAFAELKVKEIKNGMLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 174
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 169 bits (429), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 125/208 (60%), Gaps = 18/208 (8%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YLTGE+PGDYG+D GL K F KY +E++HARWAML A G +IPE + GA
Sbjct: 124 DYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVLDLTGA 183
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 179
E VW++ G L G TL+Y G IP ++ I +++L+ G EY R
Sbjct: 184 FHFAEPVWWRVGYSKLQGETLDYLG--IPGLHVAGSQGVIVIAICQVLLMVGPEYARYCG 241
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE D +PGG FDPL L++DP F LKVKEIKNGRLAM A LGF+ QA
Sbjct: 242 IEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQA 301
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVIS 258
TG+GPV+NL H+SDP NNLL ++
Sbjct: 302 AFTGKGPVQNLVDHVSDPLHNNLLAMLQ 329
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 124/208 (59%), Gaps = 18/208 (8%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YLTGE+PGDYG+D GL K F KY +E++HARWAML A G +IPE F+ G
Sbjct: 121 DYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGT 180
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 179
E VW++ G L G TL Y G IP ++ I +++L+ G EY R
Sbjct: 181 FHFAEPVWWRVGYSKLQGETLEYLG--IPGLHVAGSQGVIVIAICQVLLMVGPEYARYCG 238
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE D +PGG FDPL L++DP F LKVKEIKNGRLAM A LGF+ QA
Sbjct: 239 IEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQA 298
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVIS 258
TG+GPV+NL H+SDP NNL+ ++
Sbjct: 299 AFTGKGPVQNLVDHVSDPLHNNLIAMLQ 326
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/185 (50%), Positives = 119/185 (64%), Gaps = 10/185 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 39 GPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAML 96
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI----NLVFAVIAEI 166
GA G + P+ +K G EA+WFK GA + L+Y G N+ + N+V + ++
Sbjct: 97 GALGCVTPKLLSKNGVQF-SEALWFKAGAQIFQEGGLDYLG-NLSLVHAQNIVATLACQV 154
Query: 167 VLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
+L+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 155 ILMGLVEGYRVNGGPAGEGLDPLYPGKSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 214
Query: 225 GFFLQ 229
GFF+Q
Sbjct: 215 GFFVQ 219
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/181 (53%), Positives = 119/181 (65%), Gaps = 8/181 (4%)
Query: 79 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 138
DYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E VWFK G
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAG 60
Query: 139 ALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP 192
A + L+Y G + + AV+ ++V++G E +RI NGLD + L+PGG
Sbjct: 61 AQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVVMGLVEGFRI-NGLDGVGEGNDLYPGGQ 119
Query: 193 -FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 251
FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +P AN
Sbjct: 120 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVAN 179
Query: 252 N 252
N
Sbjct: 180 N 180
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 116/184 (63%), Gaps = 10/184 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G L E P YLTGE GDYG+D GLS P+ F +Y+ ELIHARWAML
Sbjct: 44 GPDRPKYL--GWLS-GETPAYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWAML 100
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G I PE G E VWFK GA + LNY G ++ ++ ++ +++
Sbjct: 101 GALGCITPELLANNGTPIA-EPVWFKAGAQIFQDGGLNYLGNENLVHAQSIIVTLLVQVI 159
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L+G E YR+ G E DKL+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 160 LMGTVEGYRVNGGPAGEGLDKLYPGGDFFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 219
Query: 225 GFFL 228
GFF+
Sbjct: 220 GFFV 223
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 133/241 (55%), Gaps = 31/241 (12%)
Query: 46 KSSPSGPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
KS GP+RR++LP GLLD +++P Y+ G + GDYG+DP L K ++Y+ E+ H
Sbjct: 105 KSKWYGPNRRLYLPAGLLDINTDVPSYMNGTLAGDYGFDPLQLGKD-GKIAQYRIAEVQH 163
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
ARWAML G +IPEA G N W +TG + LDG I N
Sbjct: 164 ARWAMLAVPGVVIPEALGVPGGN------WTETGKVFLDGEAGR---PEILGNPYLFTAI 214
Query: 165 EIVLVGGAEYYRITN---------------GLDLE--DKLHPGGPFDPLGLAKDPDQFAL 207
E+ L+ G E YR G D + D ++PGGP D L +A P+ A+
Sbjct: 215 EVALLAGVEGYRSGKLEAPAGFAPIYGKFEGKDFKGLDPINPGGPLDFLNVASTPEDLAI 274
Query: 208 LKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSDPFANNLLTVISGNAERAPT 266
LKVKEIKNGRLAM AMLG F+Q T GEGP N AKH++DPFA N +T+ + +R P
Sbjct: 275 LKVKEIKNGRLAMIAMLGVFVQGATTGGEGPATNWAKHVADPFAYNFVTISA--IDRTPV 332
Query: 267 L 267
L
Sbjct: 333 L 333
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/169 (53%), Positives = 112/169 (66%), Gaps = 6/169 (3%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 8 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 67
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--L 181
G EAVWFK GA + L+Y G I + A+ A ++VL+G E YRI G
Sbjct: 68 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLG 126
Query: 182 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA
Sbjct: 127 EVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 175
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 125/207 (60%), Gaps = 29/207 (14%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L E P YLTGE PGDYG++ GLS P+ F+K + E+IH+RWAM
Sbjct: 35 GPDRVKYLGPFF---GEAPSYLTGEFPGDYGWNTAGLSADPETFAKNRELEVIHSRWAM- 90
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
F++ WFK + + L+Y G + + A+ A +++
Sbjct: 91 ----------FDR----------WFKARSQIFSEGGLDYLGNPSLVHAQSILAIWACQVI 130
Query: 168 LVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L+G E YRI G ++ D L+PGG FDPLGLA DP+ F LKVKEIKNGRLAMF+M G
Sbjct: 131 LMGAVEGYRIAGGPLGEVIDPLYPGGSFDPLGLADDPEAFVELKVKEIKNGRLAMFSMFG 190
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANN 252
FF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 191 FFVQAIVTGKGPLENLADHLADPVNNN 217
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 131/236 (55%), Gaps = 32/236 (13%)
Query: 51 GPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
GP+RR++LP GLLD +++P YL G + GDYG+DP L K +Y+A E+IHARWAM
Sbjct: 86 GPNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDPLQLGKD-GKVEQYRAAEVIHARWAM 144
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-LVFAVIAEIVL 168
L G +IPEA P VW +TG + LDG I N +FA I +I L
Sbjct: 145 LAIPGIVIPEALGI------PGGVWTETGKVFLDGEAGR---PEILQNPYLFAAI-QIGL 194
Query: 169 VGGAEYYRIT---------------NGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVK 211
E YR +G D D ++PGGP D +A PD A+LKVK
Sbjct: 195 FAAVEGYRAGKAPAPDGFVPFKGKFSGSDFSGLDPINPGGPLDFFNVAATPDDLAVLKVK 254
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
EIKNGRLAM AMLG F+Q TGEGP N KH++DPF N +T+ + ER P L
Sbjct: 255 EIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFVTISA--IERTPVL 308
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 121/205 (59%), Gaps = 18/205 (8%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P++L GE PGDYG+D GLS+ P F +Y +E++HARWAML A G +IPE ++FG
Sbjct: 141 DYPDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALGVVIPELLDRFGG 200
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 179
E VW+K G L G+TL+Y G IP ++ +++L+ G EY R
Sbjct: 201 VQFSEPVWWKVGYAKLQGDTLDYLG--IPGLHIAGAQGILVIAFCQVILMLGPEYARYCG 258
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE D +PGG FDPLGL KD F LKVKE+KNGRLAM A LGF++QA
Sbjct: 259 IEALEPLGIFLPGDVNYPGGALFDPLGLTKDAAAFEDLKVKEMKNGRLAMVAWLGFYVQA 318
Query: 231 YVTGEGPVENLAKHLSDPFANNLLT 255
VT +GP++NL L DP NL
Sbjct: 319 LVTQKGPIDNLFDFLEDPLHQNLFA 343
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 131/219 (59%), Gaps = 9/219 (4%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
+K S S DRR+ E P YLTGE PGDYG+D GLS P+ F+K + E+IH
Sbjct: 48 SKVSSSTCDRRVKYLGPF--SGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIH 105
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAV 162
+R AM A G I PE + G G EAVWFK GA + L+Y G + + A+
Sbjct: 106 SRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAI 164
Query: 163 -IAEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 219
+++L+G E YRI G ++ D L+PG FD LGLA+D + FA LKVKE+KNGRLA
Sbjct: 165 WTTKVILMGAVEGYRIARGPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLA 223
Query: 220 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
MF+M GFF+QA V+ + +ENLA HL NN L+ ++
Sbjct: 224 MFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVT 262
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 114/166 (68%), Gaps = 6/166 (3%)
Query: 92 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 151
+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G
Sbjct: 3 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLG 61
Query: 152 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 206
I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 62 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPLYPGGSFDPLGLADDPEAFA 121
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 122 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 167
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 111/263 (42%), Positives = 140/263 (53%), Gaps = 34/263 (12%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPL--------TKSSPSGPDRRIFLPEGLLD- 64
T+ LSSP L+ K LSP+ S S P+GP + +
Sbjct: 4 STMALSSPALTGKAVK------LSPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKY 57
Query: 65 ----RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 120
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE
Sbjct: 58 LGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEL 117
Query: 121 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEY-----Y 175
+ G G EAVW + L + G + +G + Y
Sbjct: 118 LARNGVKFG-EAVWVQGWFTDLQRRRI---GPTWATPSLVHAQEHFSHLGYSSYPHGSLL 173
Query: 176 RIT----NG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 229
R T NG + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+Q
Sbjct: 174 RATRVPGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQ 233
Query: 230 AYVTGEGPVENLAKHLSDPFANN 252
A VTG+GP+ENLA HL+DP NN
Sbjct: 234 AIVTGKGPLENLADHLADPVNNN 256
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 113/178 (63%), Gaps = 7/178 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GP+R +L G +P YLTGE PGDYG+D GLS P+ F KY+ ELIHAR+AML
Sbjct: 33 GPNRAKWL--GPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARFAML 90
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE K+G E+VWF+ GA + L+Y G I+ + VI+++V
Sbjct: 91 GALGCVTPELLAKYGGVSFGESVWFRAGAQIFQEGGLDYLGSPALIHAQSIGAIVISQVV 150
Query: 168 LVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L+G E YR+ G E D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M
Sbjct: 151 LMGLVEGYRVNGGPAGEGLDSLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSM 208
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/202 (47%), Positives = 120/202 (59%), Gaps = 20/202 (9%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 129
E+L G + GD G+DP GLSK+ F+KYQ EL+HARWAMLG G ++PE G + G
Sbjct: 193 EHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGCLVPELLALRGVDLG 252
Query: 130 PEAVWFKTGALLLDGN-TLNYFG-------KNIPINLVFAVIAEIVLVGGAEYYRITNGL 181
E VW+K GA L+ + TLN+ G I L+ A A VL+GG EY R
Sbjct: 253 -EPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQA--VLMGGPEYARYVGIR 309
Query: 182 DLE--------DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
LE D+ +PGG PFDPL A D D F VKE+KNGRLAM AMLGFF+QA V
Sbjct: 310 SLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVEQAVKEVKNGRLAMLAMLGFFVQAAV 369
Query: 233 TGEGPVENLAKHLSDPFANNLL 254
T GPV+N+ ++DP NN+
Sbjct: 370 TRVGPVQNVLDFVADPAHNNIF 391
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 132/216 (61%), Gaps = 11/216 (5%)
Query: 35 SLSPSPSPPLTKSSPSGPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
S++PS T+++ GP+R ++ +G ++PEYL GE PGDYG D F L + P++
Sbjct: 2 SVAPSQD---TRTAYYGPNRPLW--KGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPEN 56
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
++K ++ EL++ RWAMLG G ++PE N G E VWFKTGA + ++Y G
Sbjct: 57 YAKLRSQELMNGRWAMLGITGCLVPELINS-NPTPGFEPVWFKTGAQIFSEAGIDYLGVP 115
Query: 154 IPIN---LVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLK 209
IN LV ++ + +L+G AEY RI + D +PGG FDPLG + DP+ FA LK
Sbjct: 116 GFINAHSLVAVIVVQALLMGVAEYARIKLSPEGNDAFYPGGKAFDPLGFSSDPESFAELK 175
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 245
VKEIKNGRLAM AM G F Q VTG P++NL L
Sbjct: 176 VKEIKNGRLAMMAMAGLFAQGAVTGVSPLQNLHDFL 211
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 128/235 (54%), Gaps = 30/235 (12%)
Query: 51 GPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
G +RR +LP GLLD +++P Y+ G + GDYG+DP L + Y+A E+IHARWAM
Sbjct: 84 GKNRRFYLPSGLLDPATDVPSYMDGTLAGDYGFDPLKLGAD-GKINDYRAAEVIHARWAM 142
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 169
L G +IPEA P VW +TG + LDG PI +FA I +I L
Sbjct: 143 LAIPGIVIPEALGI------PGGVWTETGKVFLDGEAGRPEILQNPI--IFAGI-QIALF 193
Query: 170 GGAEYYRIT---------------NGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKE 212
E YR +G D D ++PGGP D +A P+ A+LKVKE
Sbjct: 194 AAVEGYRSGKVAPPEGFVPGKGKFSGSDFAGLDPINPGGPLDFFNVASTPEDLAILKVKE 253
Query: 213 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
IKNGRLAM AMLG F+Q TGEGP N KH++DPF N +T+ + ER P L
Sbjct: 254 IKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFVTISA--IERTPVL 306
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 98/228 (42%), Positives = 127/228 (55%), Gaps = 37/228 (16%)
Query: 28 RKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL 87
RK S++ S P GPDR ++L E P YLTGE PGDYG+D GL
Sbjct: 46 RKATGKKSVAASSDSPWY-----GPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGL 97
Query: 88 SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL 147
S P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L
Sbjct: 98 SADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGL 156
Query: 148 NYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQ 204
+Y G + + A++A +++L+G E YR+ G PLG
Sbjct: 157 DYLGSPNLVHAQSILAILACQVILMGAIEGYRVAGG--------------PLG------- 195
Query: 205 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+VKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 196 ----EVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 239
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 114/167 (68%), Gaps = 6/167 (3%)
Query: 81 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 140
G+D GLS P+ F++ + E+IH+RWAMLGA G + PE +K G G EAVWFK G+
Sbjct: 1 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQ 59
Query: 141 LLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDP 195
+ L+Y G I + A+ A ++VL+G E YR+ G E DK++PGG FDP
Sbjct: 60 IFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKVYPGGSFDP 119
Query: 196 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 242
LGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL+
Sbjct: 120 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLS 166
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/208 (49%), Positives = 127/208 (61%), Gaps = 20/208 (9%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YLTGE+PGDYG+D GLSK F +Y +E++HARWAML A G + PE + GA
Sbjct: 122 DYPAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEILHARWAMLAALGALAPEVLDLSGA 181
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--------VIAEIVLVGGAEYYRIT 178
E VW++ G L G+TL+Y G IP L FA I + +L+ G EY R
Sbjct: 182 FHFIEPVWWRVGYSKLKGDTLDYLG--IP-GLHFAGSQGVLVIAICQALLMVGPEYARYC 238
Query: 179 NGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 229
LE D +PGGP FDPL L+ D LKVKEIKNGRLAM A LGF+ Q
Sbjct: 239 GIEALEPLGIYLPGDINYPGGPLFDPLNLSSDAVALEELKVKEIKNGRLAMVAWLGFYAQ 298
Query: 230 AYVTGEGPVENLAKHLSDPFANNLLTVI 257
A +TG+GPV+NL +H+SDPF NNLL V+
Sbjct: 299 AALTGKGPVQNLVEHISDPFHNNLLCVL 326
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 116/204 (56%), Gaps = 13/204 (6%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YL G PGDY YDP L++ D F +Y +EL+HARWAMLGA G IPE G
Sbjct: 83 DYPAYLRGGAPGDYAYDPLQLAQDQDKFDQYFEFELLHARWAMLGALGAGIPEILQYSGV 142
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFG-KNIPI----NLVFAVIAEIVLVGGAEYYRITNGL 181
+ EA W+ G L G LNY G + I + I +++L+ G EY R
Sbjct: 143 SDFLEARWWAVGGAKLQGEDLNYLGVSGLRIAGGQGIAIIAICQVLLMFGPEYARACGIE 202
Query: 182 DLE--------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
LE DK +PGG FDPLGL+KDP FA L+VKEIKNGRLA+ A +GF QA VT
Sbjct: 203 ALEPLGLYLPGDKNYPGGLFDPLGLSKDPASFADLQVKEIKNGRLALVAWVGFAAQAAVT 262
Query: 234 GEGPVENLAKHLSDPFANNLLTVI 257
+GP+ +L +DP NN+ +
Sbjct: 263 RKGPIADLLDFAADPVHNNIFAYL 286
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/207 (48%), Positives = 128/207 (61%), Gaps = 18/207 (8%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YLTGE+PGDYG+D GL K P F KY +E++HARWAML A G ++PE + GA
Sbjct: 124 DYPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGALLPELLDLLGA 183
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLVGGAEYYRITN 179
E VW++ G L G+TL+Y G IP ++ I + +L+ G EY R
Sbjct: 184 FHFVEPVWWRVGYSKLKGDTLDYLG--IPGFHFAGSQGVIVIAICQALLMVGPEYARYCG 241
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE D +PGG FDPL L+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 242 IEALEPLGIYLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQA 301
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVI 257
TG+GPV+NL HL+DPF NNLL++
Sbjct: 302 AATGKGPVQNLLDHLADPFHNNLLSIF 328
>gi|302144191|emb|CBI23318.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/205 (46%), Positives = 119/205 (58%), Gaps = 31/205 (15%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 53 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 109
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ ++V
Sbjct: 110 GAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 169
Query: 168 LVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
L+G E YRI NGL PG LKVKEIKNGRLAMF+M GFF
Sbjct: 170 LMGLVEGYRI-NGL-------PG-----------------LKVKEIKNGRLAMFSMFGFF 204
Query: 228 LQAYVTGEGPVENLAKHLSDPFANN 252
+QA VTG+GP+ENL HL +P ANN
Sbjct: 205 VQAIVTGKGPLENLLDHLDNPVANN 229
>gi|302144193|emb|CBI23320.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/205 (46%), Positives = 119/205 (58%), Gaps = 31/205 (15%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAML
Sbjct: 48 GPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAML 104
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ ++V
Sbjct: 105 GAFGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 164
Query: 168 LVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
L+G E YRI NGL PG LKVKEIKNGRLAMF+M GFF
Sbjct: 165 LMGLVEGYRI-NGL-------PG-----------------LKVKEIKNGRLAMFSMFGFF 199
Query: 228 LQAYVTGEGPVENLAKHLSDPFANN 252
+QA VTG+GP+ENL HL +P ANN
Sbjct: 200 VQAIVTGKGPLENLLDHLDNPVANN 224
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/156 (57%), Positives = 105/156 (67%), Gaps = 6/156 (3%)
Query: 102 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 159
+IH+RWAMLGA G PE K G G EAVWFK GA + L+Y G I +
Sbjct: 1 VIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSI 59
Query: 160 FAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
A+ A ++VL+G E YRI G E D L+PGG FDPLGLA DPD FA LKVKE+KNG
Sbjct: 60 LAIWATQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNG 119
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
RLAMF+M GFF+QA VTG+GPV+NL HL+DP ANN
Sbjct: 120 RLAMFSMFGFFVQAIVTGKGPVQNLYDHLADPVANN 155
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 113/191 (59%), Gaps = 10/191 (5%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+DP GL++ P++F++Y+ ELIH RWAML G +IPEA N
Sbjct: 55 PAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPGVLIPEALGL--GNW 112
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKL 187
W T G Y G +P + ++A E + V E R D E +
Sbjct: 113 VSAQQWAAT-----PGGQATYLGNPVPWGTLPIILAIEFLAVAFVEAKRGEEP-DHEKRK 166
Query: 188 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLS 246
+PGGPFDPLG AKDP + K+KE+KNGRLA+ A LGF +QA G GP+ENLA HLS
Sbjct: 167 YPGGPFDPLGFAKDPKKLEEYKLKELKNGRLALLAFLGFSVQAIAYPGTGPLENLASHLS 226
Query: 247 DPFANNLLTVI 257
+P+ANN+ +I
Sbjct: 227 NPWANNIANII 237
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 106/172 (61%), Gaps = 9/172 (5%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L G L ++P YLTGE+PGDYG+D GL P ++Y+ E+IHARWAML
Sbjct: 154 GPDRAKWL--GPL-TGQVPAYLTGELPGDYGWDTAGLGADPVTLARYREAEVIHARWAML 210
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G + PE G G AVW+K GA + + LNY G I+ +V ++ +
Sbjct: 211 GALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLA 270
Query: 168 LVGGAEYYRITNGL---DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
++G E YR G D D+L+PGGPFDPLGLA DPD FA LKVKE+KNG
Sbjct: 271 IMGAVEGYRYGGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAELKVKEVKNG 322
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 130/223 (58%), Gaps = 9/223 (4%)
Query: 36 LSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
L P+P T+ + S P R + +P G + E G Y PF ++ P F+
Sbjct: 13 LRPTPFLGQTRGANSNPLRDV-VPMGTGKYTMGNELWYGPDRVKY-LGPFS-AQTPFAFA 69
Query: 96 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 153
+ +A E+IH RWAMLGA G I PE K+ E +WFK GA + L+Y G
Sbjct: 70 RNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNPNL 129
Query: 154 IPINLVFAVIA-EIVLVGGAEYYRITN--GLDLEDKLHPGGP-FDPLGLAKDPDQFALLK 209
+ + AV+ ++VL+G E +RI G+ + L+PGG FDPLGLA DP FA LK
Sbjct: 130 VHAQSILAVLGFQVVLMGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLADDPVTFAELK 189
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
VKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 190 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 232
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 111/192 (57%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G I+PEA
Sbjct: 56 PSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL----- 110
Query: 129 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 186
W K + G Y G+ +P + ++A E + + E+ R D E K
Sbjct: 111 ---GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DSEKK 166
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG +KDP +F LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
Query: 246 SDPFANNLLTVI 257
+DP+ NN+ VI
Sbjct: 227 ADPWHNNIGDVI 238
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 122/211 (57%), Gaps = 21/211 (9%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL-SKKPDDFSKYQAYELIHARWAM 109
GP RR FLP+G PE+L G + GD G+DP GL S P D +Y+ EL+H RWAM
Sbjct: 177 GPTRRKFLPDGF--GYPFPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWAM 234
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG-----NTLNYFGKNIPINLVFAVIA 164
LG G +PEA +FG E VW+K GA L+ + L G +I + AVIA
Sbjct: 235 LGVVGAAVPEALARFGGLELGEPVWWKVGAAKLNSPDLALDYLGLGGFHIAGSSGLAVIA 294
Query: 165 --EIVLVGGAEYYRITNGLDL---------EDKLHPGG-PFDPLGLAKDPDQFALLKVKE 212
++VL+GG EY R G+D D+ +PGG PFDP G++ D F KV E
Sbjct: 295 ACQLVLMGGPEYARKV-GIDSLVPVGVYLPGDRDYPGGAPFDPFGVSADAAVFERQKVAE 353
Query: 213 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243
+K+GRLAM AMLG F QA+ TG GPVENL +
Sbjct: 354 MKHGRLAMVAMLGCFAQAWATGVGPVENLTE 384
>gi|330318814|gb|AEC11067.1| chlorophyll a/b binding protein [Camellia sinensis]
Length = 107
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/100 (75%), Positives = 82/100 (82%)
Query: 168 LVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
VGGAEY NGL+LEDKLHP GPFDPLGLAKDPDQ A+LKVKEIKNGRL MF +LGFF
Sbjct: 8 FVGGAEYSSFLNGLNLEDKLHPSGPFDPLGLAKDPDQGAILKVKEIKNGRLTMFPILGFF 67
Query: 228 LQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267
+QA VTGEGPVE LAKH+ DPFAN LT ++G ERA TL
Sbjct: 68 IQASVTGEGPVEKLAKHVRDPFANKDLTKLAGFEERASTL 107
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 114/206 (55%), Gaps = 12/206 (5%)
Query: 55 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 114
R+ + L P YL G PGD+G+DP GL + PD+ +++ ELIH RWAML G
Sbjct: 44 RVSMSAEWLPGQPRPAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPG 103
Query: 115 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAE 173
+IPEA N W T G Y G +P + +IA E V + E
Sbjct: 104 CLIPEALGL--GNWVEAQQWAAT-----PGGQATYLGTPVPWGTLPVIIAIEFVAIAFVE 156
Query: 174 YYRITNGL-DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
RI G+ E + +PGG FDPLG +KDP +F K+KE+KNGRLA+ A LGF QA
Sbjct: 157 SRRI--GVPSAEKRKYPGGAFDPLGFSKDPKKFEEFKLKEVKNGRLALLAFLGFCAQAAA 214
Query: 233 T-GEGPVENLAKHLSDPFANNLLTVI 257
G GP++NLA HL+DP+ NN+ +I
Sbjct: 215 YPGTGPLQNLATHLADPWHNNIANII 240
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 125/217 (57%), Gaps = 23/217 (10%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL------IH 104
GPDR +L G E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 52 GPDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNVSLRSSTPDGPCW 108
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
W + + F N CG FK G+ + L+Y G N + +++A
Sbjct: 109 VPWD-VSSQSFCPVTVLNSVKL-CG-----FKAGSQIFSEGGLDYLG-NPSLGSRQSILA 160
Query: 165 ----EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 218
+++L+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRL
Sbjct: 161 IWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRL 220
Query: 219 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
AMF+M GFF+QA VTG+GP+ENLA HLSDP NN +
Sbjct: 221 AMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWS 257
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 120/206 (58%), Gaps = 20/206 (9%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 129
++L GE GD G+DP L K P F++++ EL+HARWAMLG G ++PE G G
Sbjct: 71 QHLNGEEAGDAGFDPLELGKDPGAFARFREVELLHARWAMLGFVGCMVPELLALRGVELG 130
Query: 130 PEAVWFKTGALLLDGN-TLNYFG-------KNIPINLVFAVIAEIVLVGGAEYYRITNGL 181
E VW+K GA L+ + TLN+ G I L+ A A VL+GG EY R
Sbjct: 131 -EPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQA--VLMGGPEYARYVGIR 187
Query: 182 DLE--------DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
LE D+ +PGG PFDPL A D D F V+EIKNGRLAM AMLG F+QA V
Sbjct: 188 SLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVDQAVREIKNGRLAMVAMLGLFVQAAV 247
Query: 233 TGEGPVENLAKHLSDPFANNLLTVIS 258
T +GPV+N+ + +SDP N+ T ++
Sbjct: 248 TKKGPVQNVMEFVSDPAGENIFTNVA 273
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 111/192 (57%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA
Sbjct: 56 PPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEALGL----- 110
Query: 129 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 186
W K + G Y G+ +P + ++A E + + E+ R D E K
Sbjct: 111 ---GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKK 166
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG +KDP +F LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 226
Query: 246 SDPFANNLLTVI 257
+DP+ NN+ VI
Sbjct: 227 ADPWHNNIGDVI 238
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 113/193 (58%), Gaps = 14/193 (7%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+D GL + P + +Y+ ELIH RWAML G I+PEA
Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL----- 110
Query: 129 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 186
W K + G Y G+ +P + ++A E + + E+ R D E K
Sbjct: 111 ---GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DSEKK 166
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ--AYVTGEGPVENLAKH 244
+PGG FDPLG +KDP +F LKVKEIKNGRLA+ A++GF +Q AY+ G GP+ENLA H
Sbjct: 167 KYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYL-GTGPLENLATH 225
Query: 245 LSDPFANNLLTVI 257
L+DP+ NN+ VI
Sbjct: 226 LADPWHNNIGDVI 238
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 112/188 (59%), Gaps = 10/188 (5%)
Query: 35 SLSPSPSPPLTKSSPS-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 93
S+ + S ++ SP GPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 33 SMRKTGSKSVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPET 89
Query: 94 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 153
F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 90 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNP 148
Query: 154 --IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALL 208
I + A+ A ++VL+G E YRI G ++ D L+PGG FDPLGLA DP FA L
Sbjct: 149 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPKAFAEL 208
Query: 209 KVKEIKNG 216
KVKEIKNG
Sbjct: 209 KVKEIKNG 216
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 113/206 (54%), Gaps = 12/206 (5%)
Query: 55 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 114
R+ + L P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G
Sbjct: 41 RVTMSADWLPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 100
Query: 115 FIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIA-EIVLVGGA 172
+IPEA W K G Y G+ +P + V+A E V +
Sbjct: 101 ILIPEALGL--------GNWVKAQEWAAAPGGQATYLGQPVPWGTLPTVLAIEFVAIAFV 152
Query: 173 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 231
E+ R D E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGFSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSA 211
Query: 232 VTGEGPVENLAKHLSDPFANNLLTVI 257
G GP+ENLA HL+DP+ NN+ +I
Sbjct: 212 YPGTGPLENLATHLADPWHNNIGDII 237
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 125/229 (54%), Gaps = 15/229 (6%)
Query: 32 LLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 91
L PS + S P ++ SG R+ + + P +L G PGD+G+DP GL+ P
Sbjct: 18 LAPSSNRSRLPVCAYATTSG---RVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGLATVP 74
Query: 92 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYF 150
++F +++ E+ H RWAML G ++PEA W + + G Y
Sbjct: 75 ENFERFKESEVYHCRWAMLAVPGVLVPEALGL--------GNWVQAQEWAAEPGGQATYL 126
Query: 151 GKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLK 209
G +P L ++ E V + AE+ R T D E K +PGG FDPLG +KDP +F K
Sbjct: 127 GNPVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKKKYPGGAFDPLGFSKDPVKFEEYK 185
Query: 210 VKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANNLLTVI 257
+KEIKNGRLAM A +GF + Q+ G GP+ENLA HLSDP+ NN+ +I
Sbjct: 186 LKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNIGDII 234
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 111/193 (57%), Gaps = 18/193 (9%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
S P +LTG + GD G+DP L K P+ ++ EL+HARWAML G +PEA + G
Sbjct: 185 SSPPPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAMLAVVGVAVPEALSIAG 244
Query: 126 A----NCGPEAVWFKTGALLLDGNTLNYFGKN---IPINLVFAVIA--EIVLVGGAEYYR 176
A E VW+K GA L+G +LNY G I AVIA + VL+GG EY R
Sbjct: 245 ALPEGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIAGKQGVAVIAACQAVLMGGPEYAR 304
Query: 177 ITNGLDLE--------DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
LE D +PGG PFDP GL+ D D+FA KV EI++GRLAM AMLG F
Sbjct: 305 YVGIRSLEPVGVYLPGDANYPGGAPFDPFGLSDDADRFARQKVIEIEHGRLAMVAMLGCF 364
Query: 228 LQAYVTGEGPVEN 240
QA VTGEGPV N
Sbjct: 365 AQAIVTGEGPVAN 377
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/209 (44%), Positives = 124/209 (59%), Gaps = 12/209 (5%)
Query: 51 GPDRRIFL-PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD-FSKYQAYELIHARWA 108
GPDR +L P + + P Y TGE PGDYG+D GLS P+ F+K A E+I+ RWA
Sbjct: 49 GPDRVKYLGPFSV----QTPSYPTGEFPGDYGWDTAGLSADPEKAFAKNIALEVIYGRWA 104
Query: 109 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 165
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 105 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 164
Query: 166 IVLVGGAEYYRIT--NGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
++L+G E +RI +G+ + L+PGG FD L L D F LKVKEIKNG LAMF+
Sbjct: 165 VILMGLVEGFRINRFDGVGEGNDLYPGGKYFDLLSLVDDQVTFVELKVKEIKNGMLAMFS 224
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFAN 251
M GFF+QA VTG+ P+E+L HL + AN
Sbjct: 225 MFGFFVQAIVTGKDPLESLLDHLDNFVAN 253
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 113/184 (61%), Gaps = 5/184 (2%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
++PEYL GE PGDYG D F L++ P ++++ + EL++ RWAMLG G + PE N
Sbjct: 41 KDVPEYLKGEYPGDYGCDIFKLARLPANYARLRTQELMNGRWAMLGITGCLTPELINS-N 99
Query: 126 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGLD 182
+ G E VWF TGA + ++Y G IN +FAVI + +L+G AEY RI +
Sbjct: 100 STPGFEPVWFNTGAQIFSDAGIDYLGVPGFINAHSLFAVIVVQALLMGLAEYARIKFVPE 159
Query: 183 LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
D +PGG FDPLG + DP+ A LKVKEIKNGRLAM AM G F Q VTG P++NL
Sbjct: 160 GADPFYPGGKTFDPLGFSSDPEILAELKVKEIKNGRLAMMAMAGLFAQGAVTGVSPLQNL 219
Query: 242 AKHL 245
L
Sbjct: 220 HDWL 223
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 111/192 (57%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 110
Query: 129 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 186
W K + G Y G +P L ++ E V + AE+ R T D E K
Sbjct: 111 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKK 166
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 226
Query: 246 SDPFANNLLTVI 257
+DP+ NN+ +I
Sbjct: 227 ADPWHNNIGDII 238
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 112/192 (58%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 110
Query: 129 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 186
W K + G Y G +P +L ++ E V + AE+ R T D E K
Sbjct: 111 ---GNWVKAQEWAAVPGGQATYLGNPVPWGSLPTILVIEFVAIAFAEHQR-TMEKDPEKK 166
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHL 226
Query: 246 SDPFANNLLTVI 257
+DP+ NN+ +I
Sbjct: 227 ADPWHNNIGDII 238
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 113/213 (53%), Gaps = 10/213 (4%)
Query: 43 PLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 102
P TK S R + L S+ P YL G +PG +G+DPFGL P + ++Q EL
Sbjct: 18 PATKLPKSNGSRVVMKAGNWLPGSDTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAEL 76
Query: 103 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 162
+H+RWAM G AG + GA + W++ ++G Y G +P NL +
Sbjct: 77 VHSRWAMAGVAGAL--------GAELLGQGDWYQAPLWAVNGGAPTYLGIPVPFNLSTLL 128
Query: 163 IAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
E V + GAE R D E + +PGG FDPLG +KD K+KE+KNGRLAM A
Sbjct: 129 AIEFVAIAGAEAQRNAE-PDAEKRKYPGGAFDPLGFSKDSKVLEENKLKELKNGRLAMLA 187
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
+GF Q TG+GP+E L HL+DP+ N T
Sbjct: 188 FVGFIAQHAATGKGPLEALKLHLADPWGANFAT 220
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 111/192 (57%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 110
Query: 129 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 186
W K + G Y G +P L ++ E V + AE+ R T D E K
Sbjct: 111 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKK 166
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 226
Query: 246 SDPFANNLLTVI 257
+DP+ NN+ +I
Sbjct: 227 ADPWHNNIGDII 238
>gi|13676402|dbj|BAB41190.1| type I chlorophyll a/b-binding protein a [Amaranthus tricolor]
Length = 154
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 102/155 (65%), Gaps = 6/155 (3%)
Query: 79 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 138
DYG+D GLS P+ F+K + E+IH RWAMLGA G I PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLARNGVKFG-EAVWFKAG 59
Query: 139 ALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPF 193
+ + L+Y G I+ + A+ A +++L+G E YRI G ++ D L+PGG F
Sbjct: 60 SQIFSEGGLDYLGNPTLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSF 119
Query: 194 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
DPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+
Sbjct: 120 DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 116/206 (56%), Gaps = 12/206 (5%)
Query: 55 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 114
RI + + P YL G PGD+G+DP GL + P++ +Y+ ELIH RWAML G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPG 100
Query: 115 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 172
++PEA +G W K L G Y G +P + ++A E + +
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 173 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 231
E+ R D E K +PGG FDPLG +KDP +F LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSA 211
Query: 232 VTGEGPVENLAKHLSDPFANNLLTVI 257
G GP+ENLA HL+DP+ N+ ++
Sbjct: 212 YPGTGPLENLATHLADPWHKNIGDIV 237
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 123/209 (58%), Gaps = 8/209 (3%)
Query: 37 SPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 96
+PS + T ++ S P+R ++L P YL G + GDYG+D GLS P+ +
Sbjct: 8 TPSFAMRRTTAATSAPERPLWLGP---YTGATPSYLDGSLVGDYGWDTSGLSTTPEALLR 64
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--I 154
+ EL+HARWAMLGA G ++PE + E VWFK GA + L+Y G +
Sbjct: 65 NRELELLHARWAMLGALGSLLPELLATYAGTPLLEPVWFKAGAQIFSPGGLDYLGNPSLV 124
Query: 155 PINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 211
+ A++ +++L+G +E YR+ G ++ D L+PG FDPLG ++DP+ L+ K
Sbjct: 125 HAQSILAILGFQVLLMGLSEGYRLAGGPLGEVGDALYPGASFDPLGFSEDPESLLELQTK 184
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
EIKNGRLAM AMLG + QA VTG+GPV N
Sbjct: 185 EIKNGRLAMLAMLGMYTQALVTGKGPVSN 213
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 122/215 (56%), Gaps = 20/215 (9%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
SS G R FL + E P +L G + GD G+DP GL K DD + + EL+HAR
Sbjct: 155 SSLYGARRVKFLGDA---EYEYPAHLDGSLCGDAGFDPLGLGK--DDLPRMRELELLHAR 209
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN-TLNYFGK---NIPINLVFAV 162
WAMLG G +PE ++G E VW+K GA ++ + +L+YFG +I A+
Sbjct: 210 WAMLGIVGVAVPELLERYGVADLGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAI 269
Query: 163 IA--EIVLVGGAEYYRITNGLDLE--------DKLHPGG-PFDPLGLAKDPDQFALLKVK 211
IA ++VL+GG EY R LE DK +PGG PFDP ++ D D+F KV
Sbjct: 270 IAACQVVLMGGPEYARYVGIDSLEPVGVYLPGDKDYPGGAPFDPFKISDDADEFEKQKVM 329
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 246
EIK+GRLAM AMLG QA+VT GP+ENLA S
Sbjct: 330 EIKHGRLAMIAMLGVAAQAFVTRAGPIENLASVFS 364
>gi|15637137|gb|AAL04435.1| chlorophyll a/b binding protein [Beta vulgaris]
Length = 168
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 103/159 (64%), Gaps = 6/159 (3%)
Query: 79 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 138
DYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAG 59
Query: 139 ALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPF 193
+ + L+Y G + + A+ A +++L+G E YR+ G ++ D L+PGG F
Sbjct: 60 SQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSF 119
Query: 194 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
DPLGLA DP+ FA LKVKEIKNGRLAM +M GFF+QA V
Sbjct: 120 DPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIV 158
>gi|12240089|gb|AAG49561.1| light-harvesting chlorophyll-binding protein [Citrus reticulata]
Length = 156
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 103/157 (65%), Gaps = 6/157 (3%)
Query: 74 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 133
GE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K G G EAV
Sbjct: 1 GEFPGDYGWDTAGLSADPETFAKNREPEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAV 59
Query: 134 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLH 188
WFK GA + L+Y G I + A+ A ++VL+G E YRI G E D L+
Sbjct: 60 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLY 119
Query: 189 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
PGG FDPLGLA PDQFA LKVKE+KNGRLAMF+M G
Sbjct: 120 PGGAFDPLGLADGPDQFAELKVKELKNGRLAMFSMFG 156
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 124/229 (54%), Gaps = 15/229 (6%)
Query: 32 LLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 91
L PS + S P ++ SG R+ + + P +L G PGD+G+DP GL+ P
Sbjct: 18 LAPSSNRSRLPVCAYATTSG---RVTMSAEWMPGQPRPAHLDGSSPGDFGFDPLGLATVP 74
Query: 92 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYF 150
++F +++ E+ H RWAML G ++PEA W + + G Y
Sbjct: 75 ENFERFKESEVYHCRWAMLAVPGVLVPEALGL--------GNWVQAQEWAAEPGGQATYL 126
Query: 151 GKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLK 209
G +P L ++ E V + AE+ R T D E K +PGG FDPLG +KDP +F K
Sbjct: 127 GNPVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKKKYPGGAFDPLGFSKDPVKFEEYK 185
Query: 210 VKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANNLLTVI 257
+KEIKNGRLAM A + F + Q+ G GP+ENLA HLSDP+ NN+ +I
Sbjct: 186 LKEIKNGRLAMLAFVAFCVQQSAYPGTGPLENLASHLSDPWHNNIGDII 234
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 107/191 (56%), Gaps = 10/191 (5%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP GL P++ +Y+ ELIH RWAML G +IPEA N
Sbjct: 57 PAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGL--GNW 114
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL-DLEDKL 187
W + G Y G +P F +I I + A NG DLE +
Sbjct: 115 VEAQKW-----AAIPGGQATYLGVPVPWGY-FPIILSIFFLKMAFAESQRNGEPDLEKRK 168
Query: 188 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLS 246
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA G GP+ENLA HLS
Sbjct: 169 YPGGAFDPLGFSKDPAKFEEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLS 228
Query: 247 DPFANNLLTVI 257
DP+ N+ +I
Sbjct: 229 DPWHKNIAEII 239
>gi|13676406|dbj|BAB41192.1| type I chlorophyll a/b-binding protein b [Amaranthus tricolor]
Length = 154
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 101/155 (65%), Gaps = 6/155 (3%)
Query: 79 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 138
DYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAG 59
Query: 139 ALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPF 193
+ + L+Y G I + A+ A +++L+G E YRI G ++ D L+PGG F
Sbjct: 60 SQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSF 119
Query: 194 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
DPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+
Sbjct: 120 DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 113/193 (58%), Gaps = 14/193 (7%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 109
Query: 129 GPEAVWFKT--GALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 185
W K A L DG Y G +P NL + E + + AE R T D E
Sbjct: 110 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 164
Query: 186 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 244
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENLA H
Sbjct: 165 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATH 224
Query: 245 LSDPFANNLLTVI 257
L+DP+ NN+ ++
Sbjct: 225 LADPWHNNIGDIV 237
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 116/206 (56%), Gaps = 12/206 (5%)
Query: 55 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 114
RI + + P YL G PGD+G+DP GL + P++ +Y+ ELIH RWAML G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPG 100
Query: 115 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 172
++PEA +G W K + G Y G +P + ++A E + +
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 173 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 231
E+ R D E K +PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSA 211
Query: 232 VTGEGPVENLAKHLSDPFANNLLTVI 257
G GP+ENLA HL+DP+ NN+ ++
Sbjct: 212 YPGTGPLENLATHLADPWHNNIGDIV 237
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 111/194 (57%), Gaps = 14/194 (7%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 80 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 134
Query: 129 GPEAVWFKTG--ALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 185
W K A L DG Y G +P NL + E + + AE R T D E
Sbjct: 135 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 189
Query: 186 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 244
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENLA H
Sbjct: 190 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATH 249
Query: 245 LSDPFANNLLTVIS 258
L+DP+ N T S
Sbjct: 250 LADPWHNTSATSSS 263
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 113/193 (58%), Gaps = 14/193 (7%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 111
Query: 129 GPEAVWFKT--GALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 185
W K A L DG YFG +P NL + E + + AE R T D E
Sbjct: 112 ---GNWVKAQEWAALPDGQA-TYFGVPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 166
Query: 186 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 244
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENL H
Sbjct: 167 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLGAH 226
Query: 245 LSDPFANNLLTVI 257
L+DP+ NN+ ++
Sbjct: 227 LADPWHNNIGDIV 239
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 115/206 (55%), Gaps = 12/206 (5%)
Query: 55 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 114
RI + + P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G
Sbjct: 41 RIKMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 115 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 172
++PEA +G W K L G Y G +P + ++A E + +
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 173 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 231
E+ R D E K +PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSA 211
Query: 232 VTGEGPVENLAKHLSDPFANNLLTVI 257
G GP+ENLA HL+DP+ NN+ ++
Sbjct: 212 YPGTGPLENLATHLADPWHNNIGDIV 237
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 115/206 (55%), Gaps = 12/206 (5%)
Query: 55 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 114
RI + + P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 115 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGA 172
++PEA +G W K L G Y G +P + ++A E + +
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 173 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAY 231
E+ R D E K +PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSA 211
Query: 232 VTGEGPVENLAKHLSDPFANNLLTVI 257
G GP+ENLA HL+DP+ NN+ ++
Sbjct: 212 YPGTGPLENLATHLADPWHNNIGDIV 237
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 112/205 (54%), Gaps = 10/205 (4%)
Query: 55 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 114
R+ + + P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G
Sbjct: 40 RVTMSANWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 99
Query: 115 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAE 173
++PEA N W T G Y G+ +P + ++A E V + E
Sbjct: 100 ILVPEALGL--GNWVKAQEWAAT-----PGGQATYLGQPVPWGTLPIILAIEFVAIAFVE 152
Query: 174 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
+ R D E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +G +Q
Sbjct: 153 HQRSMEK-DTEKKKYPGGAFDPLGYSKDPQKFEEYKVKEIKNGRLALLAFVGICVQQTAY 211
Query: 234 -GEGPVENLAKHLSDPFANNLLTVI 257
G GP+ENLA HL+DP+ NN+ V+
Sbjct: 212 PGTGPLENLATHLADPWHNNIGDVL 236
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 111/192 (57%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 7 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 61
Query: 129 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 186
W K + G Y G +P L ++ E V + AE+ R T D E K
Sbjct: 62 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQR-TMEKDPEKK 117
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 118 KYPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 177
Query: 246 SDPFANNLLTVI 257
+DP+ NN+ +I
Sbjct: 178 ADPWHNNIGDII 189
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 109/192 (56%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 109
Query: 129 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 186
W K L G Y G +P + V+A E + + E+ R D E K
Sbjct: 110 ---GNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEK-DPEKK 165
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 166 KYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 225
Query: 246 SDPFANNLLTVI 257
+DP+ NN+ V+
Sbjct: 226 ADPWHNNIGNVL 237
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 110/192 (57%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+DP GL + P++ +++ ELIH RWAML G ++PEA
Sbjct: 57 PPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 111
Query: 129 GPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 186
W K + G Y G+ +P L ++ E + + E+ R D E K
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEK-DPEKK 167
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG +KDP++ KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 168 KYPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 227
Query: 246 SDPFANNLLTVI 257
+DP+ NN+ +I
Sbjct: 228 ADPWHNNIGDII 239
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 109/192 (56%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 109
Query: 129 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 186
W K L G Y G +P + V+A E + + E+ R D E K
Sbjct: 110 ---GNWVKAQEWAALPGGQATYLGNPVPRGTLPTVLAIEFLAISFVEHQRSMEK-DPEKK 165
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 166 KYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 225
Query: 246 SDPFANNLLTVI 257
+DP+ NN+ V+
Sbjct: 226 ADPWHNNIGNVL 237
>gi|297744047|emb|CBI37017.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 119/238 (50%), Gaps = 69/238 (28%)
Query: 15 TLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTG 74
T+ LSSP + P P GPDR +L E P YLTG
Sbjct: 3 TMALSSPFVGKPSGSPWY------------------GPDRVKYLGP---FSGEPPSYLTG 41
Query: 75 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 134
E PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE ++ G G EAVW
Sbjct: 42 EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVW 100
Query: 135 FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFD 194
FK ++A +++L+G E YRI G
Sbjct: 101 FKAA--------------------IWAC--QVILMGAVEGYRIGGG-------------- 124
Query: 195 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
PLG +VKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 125 PLG-----------EVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 171
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 109/188 (57%), Gaps = 12/188 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 63
Query: 129 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 186
W K L G Y G +P + ++A E + + E+ R D E K
Sbjct: 64 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKK 117
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 118 KYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 177
Query: 246 SDPFANNL 253
+DP+ NN+
Sbjct: 178 ADPWHNNI 185
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 111/192 (57%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 60 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 114
Query: 129 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 186
W K + G Y G +P + ++A E V + AE+ R T D E K
Sbjct: 115 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILAVEFVAIAFAEHQR-TMEKDPEKK 170
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG ++DP + K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 171 KYPGGAFDPLGFSRDPAKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLAAHL 230
Query: 246 SDPFANNLLTVI 257
+DP+ NN+ +I
Sbjct: 231 ADPWHNNIGDII 242
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G ++PEA N
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGL--GNW 112
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKL 187
W + G Y G +P NL + E + + E+ R D E K
Sbjct: 113 VQAQEW-----AAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEK-DTEKKK 166
Query: 188 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 246
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 167 YPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLA 226
Query: 247 DPFANNLLTVI 257
DP+ NN+ VI
Sbjct: 227 DPWHNNIGDVI 237
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 110/192 (57%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G +IPEA N
Sbjct: 56 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGL--GNW 113
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGL-DLEDK 186
W + G+ YFG +P + V+A E + + E R NG D E +
Sbjct: 114 VEAQKW-----AAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQR--NGEPDPEKR 166
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 245
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA G GP+ENLA HL
Sbjct: 167 KYPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHL 226
Query: 246 SDPFANNLLTVI 257
SDP+ N+ +I
Sbjct: 227 SDPWHRNIAEII 238
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 109/188 (57%), Gaps = 12/188 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP GL P++F +++ E+ H RWAML G ++PEA
Sbjct: 25 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGL----- 79
Query: 129 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 186
W K + G YFG +P NL + E V + AE+ R T D E K
Sbjct: 80 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFVAIAFAEHQR-TMEKDPEKK 135
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 136 KYPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 195
Query: 246 SDPFANNL 253
+DP+ NN+
Sbjct: 196 ADPWHNNI 203
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 114/206 (55%), Gaps = 12/206 (5%)
Query: 55 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 114
R+ + + + P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G
Sbjct: 43 RVSMSDEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPG 102
Query: 115 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAE 173
+IPEA N W + GN Y G +P + ++A E + + E
Sbjct: 103 VLIPEALGL--GNWVEAQKW-----AAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVE 155
Query: 174 YYRITNGL-DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
R NG D E + +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA
Sbjct: 156 SQR--NGEPDPEKRKYPGGAFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASA 213
Query: 233 T-GEGPVENLAKHLSDPFANNLLTVI 257
G GP+ENLA HLSDP+ N+ +I
Sbjct: 214 NPGTGPLENLATHLSDPWHKNIAEII 239
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 108/192 (56%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 57 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 111
Query: 129 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 186
W K + G Y G +P + ++A E + + E+ R D E K
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSMEK-DPEKK 167
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG +KDP F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 168 KYPGGAFDPLGYSKDPKTFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHL 227
Query: 246 SDPFANNLLTVI 257
+DP+ NN+ VI
Sbjct: 228 ADPWHNNIGNVI 239
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 109/192 (56%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G +IPEA N
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGL--GNW 114
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGL-DLEDK 186
W + GN Y G +P + ++A E + + E R NG D E +
Sbjct: 115 VEAQKW-----AAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQR--NGEPDPEKR 167
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 245
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA G GP+ENLA HL
Sbjct: 168 KYPGGAFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHL 227
Query: 246 SDPFANNLLTVI 257
SDP+ N+ +I
Sbjct: 228 SDPWHKNIAEII 239
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 110/192 (57%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP GL P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGL----- 111
Query: 129 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 186
W K + G YFG +P NL + E + + AE+ R T D E K
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQR-TMEKDPEKK 167
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG +KDP + K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 168 KYPGGAFDPLGFSKDPVKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHL 227
Query: 246 SDPFANNLLTVI 257
+DP+ NN+ V+
Sbjct: 228 ADPWHNNIGDVV 239
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 139/253 (54%), Gaps = 41/253 (16%)
Query: 36 LSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + SPP+ ++ G +R+++ + YL G +PGD+G+DP GLS P+
Sbjct: 42 VKAASSPPVKQN---GANRQLWFAS-----KQSLSYLDGSLPGDFGFDPLGLSD-PEGTG 92
Query: 96 -----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLN 148
++ AY E+I+ R+AMLGAAG I PE K G A+ WF+TG + G T N
Sbjct: 93 GFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYN 151
Query: 149 YFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLEDKL-------HPG 190
Y+ N + + E+ +G AE+ R + L LE L +PG
Sbjct: 152 YWADNYTL-----FVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPG 206
Query: 191 GP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 249
GP F+PLG KD LK+KE+KNGRLAM A+LG+F+QA VTG GP +NL HL+DP
Sbjct: 207 GPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPV 266
Query: 250 ANNLLTVISGNAE 262
NN+LT + GN E
Sbjct: 267 NNNILTSLKGNKE 279
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 122/214 (57%), Gaps = 33/214 (15%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 123
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K
Sbjct: 348 SYLDGSLPGDFGFDPLGLSD-PEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEILGK 406
Query: 124 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
G A+ WF+TG + G T NY+ N + + E+ +G AE+ R+ +
Sbjct: 407 AGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMGFAEHRRLQDWYN 460
Query: 181 ---------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L LE L +PGGP F+PLG KD LK+KE+KNGRLAM A+
Sbjct: 461 PGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 520
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 521 LGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 554
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 108/191 (56%), Gaps = 10/191 (5%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G ++PEA N
Sbjct: 12 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGL--GNW 69
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKL 187
W + G Y G +P NL + E + + E+ R D E K
Sbjct: 70 VQAQEW-----AAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEK-DTEKKK 123
Query: 188 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 246
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 124 YPGGAFDPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLA 183
Query: 247 DPFANNLLTVI 257
DP+ NN+ VI
Sbjct: 184 DPWHNNIGDVI 194
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 110/192 (57%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G +IPEA N
Sbjct: 17 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGL--GNW 74
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGL-DLEDK 186
W + G+ YFG +P + V+A E + + E R NG D E +
Sbjct: 75 VEAQKW-----AAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQR--NGEPDPEKR 127
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 245
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA G GP+ENLA HL
Sbjct: 128 KYPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHL 187
Query: 246 SDPFANNLLTVI 257
SDP+ N+ +I
Sbjct: 188 SDPWHRNIAEII 199
>gi|388507164|gb|AFK41648.1| unknown [Lotus japonicus]
Length = 160
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/149 (51%), Positives = 99/149 (66%), Gaps = 6/149 (4%)
Query: 109 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAE 165
MLGA G + PE + G G EAVWFK G+ + L+Y G ++ ++ +
Sbjct: 1 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILVIWATQ 59
Query: 166 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 60 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 119
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 120 FGFFVQAIVTGKGPLENLADHLSDPVNNN 148
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 114/211 (54%), Gaps = 12/211 (5%)
Query: 50 SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
+G RI + + P YL G PGD+G+DP L + P++ +++ ELIH RWAM
Sbjct: 36 NGSSSRITMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAM 95
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVFAVIAEIV 167
L G ++PEA W K + G Y G+ +P L ++ E +
Sbjct: 96 LAVPGILVPEALGL--------GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFL 147
Query: 168 LVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
+ E+ R D E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +G
Sbjct: 148 AIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPAKFHEYKVKEIKNGRLALLAFVGIC 206
Query: 228 L-QAYVTGEGPVENLAKHLSDPFANNLLTVI 257
+ Q+ G GP+ENLA HL+DP+ NN+ +I
Sbjct: 207 VQQSAYPGTGPLENLATHLADPWHNNIGDII 237
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 113/191 (59%), Gaps = 15/191 (7%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
++ P++L+GE+PGDYG+DP GL + P +Y EL+HARWAMLGA G ++PE G
Sbjct: 137 TQPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVELELLHARWAMLGALGAVVPELLQLAG 196
Query: 126 ANCGPEAVWFKTG-ALLLDGNTLNYFGK---NIPINLVFAVIA--EIVLVGGAEYYRITN 179
+ E W+ G A L G L Y G + A+IA +++L+ G EY R
Sbjct: 197 SATFLEDRWWNVGYAKLTTGEELAYLGVPGLRVAGGQGVAIIAFCQVLLMFGPEYARACG 256
Query: 180 GLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
LE DK +PGG FDPL L+ D +++ ++V+EIKNGRLAM A LGF QA
Sbjct: 257 ISALEPLGVFLPGDKNYPGGWLFDPLQLSGDAERYEAMRVREIKNGRLAMVAWLGFAAQA 316
Query: 231 YVTGEGPVENL 241
VT +GPV+NL
Sbjct: 317 AVTRQGPVQNL 327
>gi|224034127|gb|ACN36139.1| unknown [Zea mays]
Length = 191
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 100/149 (67%), Gaps = 6/149 (4%)
Query: 109 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 165
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 1 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 59
Query: 166 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
+VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 60 VVLMGAIEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 119
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 120 FGFFVQAIVTGKGPLENLADHLADPVNNN 148
>gi|242045514|ref|XP_002460628.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
gi|241924005|gb|EER97149.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
Length = 160
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 100/149 (67%), Gaps = 6/149 (4%)
Query: 109 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 165
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 1 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 59
Query: 166 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
+VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 60 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 119
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 120 FGFFVQAIVTGKGPLENLADHLADPVNNN 148
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 12/214 (5%)
Query: 43 PLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 102
PL ++ + R + + P YL G PGD+G+DP L + P++ +++ EL
Sbjct: 30 PLPCTASTNASSRFTMTSDWMPGQPRPSYLDGSAPGDFGFDPLRLGEVPENLERFKESEL 89
Query: 103 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPI-NLVF 160
IH RWAML G ++PEA W K L G Y G +P L
Sbjct: 90 IHCRWAMLAVPGILVPEALGL--------GNWVKAQEWAALPGGQATYLGNPVPWGTLPT 141
Query: 161 AVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAM 220
++ E + + E+ R D E K +PGG FDPLG +KDP +F K+KE+KNGRLA+
Sbjct: 142 ILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLAL 200
Query: 221 FAMLGFFLQAYVT-GEGPVENLAKHLSDPFANNL 253
A +G +Q G GP+ENLA HL+DP+ NN+
Sbjct: 201 LAFVGIVVQQTAYPGTGPLENLATHLADPWHNNI 234
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 109/192 (56%), Gaps = 12/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+DP L + P++ +++ ELIH WAML G ++PEA
Sbjct: 51 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEALGL----- 105
Query: 129 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDK 186
W K + G Y G +P + ++A E + + E+ R + G D E K
Sbjct: 106 ---GNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQR-SMGKDPEKK 161
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 245
+PGG FDPLG +KDP F KVKE+KNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 162 KYPGGAFDPLGYSKDPKTFHEYKVKELKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHL 221
Query: 246 SDPFANNLLTVI 257
+DP+ NN+ +I
Sbjct: 222 ADPWHNNIGNII 233
>gi|148908677|gb|ABR17446.1| unknown [Picea sitchensis]
Length = 160
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/149 (55%), Positives = 99/149 (66%), Gaps = 6/149 (4%)
Query: 109 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 165
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 1 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 59
Query: 166 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
+VL+G E YR+ G E D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 60 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 119
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 120 FGFFVQAIVTGKGPIENLFDHLADPTANN 148
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 108/191 (56%), Gaps = 14/191 (7%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 111
Query: 129 GPEAVWFKT--GALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 185
W K A L DG Y G +P NL + E + + AE R T D E
Sbjct: 112 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 166
Query: 186 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 244
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+EN H
Sbjct: 167 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENPGTH 226
Query: 245 LSDPFANNLLT 255
L+DP+ N T
Sbjct: 227 LADPWHNTSAT 237
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 124/213 (58%), Gaps = 20/213 (9%)
Query: 46 KSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 105
+S+ G +R FL G L+ E P +L G + GD G+DP L+ K +D +Y+ EL+H
Sbjct: 28 RSAFYGANRVKFL--GDLE-YEYPAHLDGTLCGDVGFDPLNLAAKSEDLERYRELELLHG 84
Query: 106 RWAMLGAAGFIIPEAFNKFG-ANCGPEAVWFKTGALLLDGNT----LNYFGKNIPINLVF 160
RWAMLG G +PE ++FG AN G E VW+K GA ++ + L + G +I
Sbjct: 85 RWAMLGVVGAAVPETLDRFGVANLG-EPVWWKVGAAKMNSDIALDYLGFSGFHIAGGSGI 143
Query: 161 AVIA--EIVLVGGAEYYRITNGLDLE--------DKLHPGG-PFDPLGLAKDPDQFALLK 209
AVIA ++VL+GG EY R LE DK +PGG PFDP + D ++F K
Sbjct: 144 AVIAACQLVLMGGPEYARYVGINSLEPVGVYLPGDKDYPGGAPFDPFKFSDDAEEFEKQK 203
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 242
V EIK+ RLAM A LG +QA VT +GP+ENLA
Sbjct: 204 VMEIKHCRLAMIAALGCAIQAIVTRQGPIENLA 236
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 120/214 (56%), Gaps = 30/214 (14%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSK--KPDDFS--KYQAY-ELIHARWAMLGAAGFIIPEA 120
S+ YL G +PGDYG+DP GLS +F + +Y E+I+ R+AMLGAAG I PE
Sbjct: 66 SQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEI 125
Query: 121 FNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 179
F K G AV WFKTG G T NY+ P L F E+ L+G AE+ R +
Sbjct: 126 FGKIGIIPQQTAVVWFKTGVFPPAG-TYNYWAD--PYTLFFL---EMALMGFAEHRRAQD 179
Query: 180 G-----------LDLE-------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
L E D +PGG F+P G KD LK+KE+KNGRLAM
Sbjct: 180 YYKPGSMGKQYFLGFEKYLGGSGDPAYPGGIFNPFGFGKDEKSMRTLKIKEVKNGRLAML 239
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
A+LG+F+QA TG GP +NL HL+DPFANN+LT
Sbjct: 240 AILGYFIQAPFTGVGPFQNLLDHLADPFANNILT 273
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/267 (39%), Positives = 142/267 (53%), Gaps = 46/267 (17%)
Query: 18 LSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVP 77
+ S + S RK P + + S SPP + G DR+++ + YL G +P
Sbjct: 17 VQSAVSRSSARKAPFV--VRASSSPP----AKQGADRQLWFAS-----KQSLSYLDGTLP 65
Query: 78 GDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPE 131
GDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE F K G PE
Sbjct: 66 GDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGI-IPPE 123
Query: 132 AV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--------- 180
WFKTG + G T NY+ + + + + L+G AE+ R+ +
Sbjct: 124 TALPWFKTGVIPPAG-TYNYWADSYTL-----FVFNMALMGFAEHRRLQDWYNPGSMGKQ 177
Query: 181 --LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
L LE D +PGGP F+PLG K + LK+KEIKNGRLAM A+LG+F+Q
Sbjct: 178 YFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFIQG 237
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVI 257
VTG GP +NL HL+DP NN+LT +
Sbjct: 238 LVTGVGPFQNLLDHLADPVNNNVLTSL 264
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 120/214 (56%), Gaps = 30/214 (14%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSK--KPDDFS--KYQAY-ELIHARWAMLGAAGFIIPEA 120
S+ YL G +PGDYG+DP GLS +F + +Y E+I+ R+AMLGAAG I PE
Sbjct: 66 SQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEI 125
Query: 121 FNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 179
F K G AV WFKTG G T NY+ P L F E+ L+G AE+ R +
Sbjct: 126 FGKIGIIPQETAVVWFKTGVFPPAG-TYNYWAD--PYTLFFL---EMALMGFAEHRRAQD 179
Query: 180 G-----------LDLE-------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
L E D +PGG F+P G KD LK+KE+KNGRLAM
Sbjct: 180 FYKPGSMGKQYFLGFEKYLGGSGDPAYPGGIFNPFGFGKDEKSMRTLKIKEVKNGRLAML 239
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
A+LG+F+QA TG GP +NL HL+DPFANN+LT
Sbjct: 240 AILGYFIQAPFTGVGPFQNLLDHLADPFANNILT 273
>gi|296085004|emb|CBI28419.3| unnamed protein product [Vitis vinifera]
Length = 172
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 111/213 (52%), Gaps = 62/213 (29%)
Query: 45 TKSSPS----GPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 99
KS+P GPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 5 VKSTPQSIWYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 60
Query: 100 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 159
E+IH RWAMLGA G + PE +K G FG+ + I +
Sbjct: 61 LEVIHCRWAMLGALGCVFPEILSKNGVK----------------------FGEAVCILAI 98
Query: 160 FAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 219
+A ++VL+G E YR+ LKVKEIKNGRLA
Sbjct: 99 WA--CQVVLMGFVEGYRVE-----------------------------LKVKEIKNGRLA 127
Query: 220 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
MF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 128 MFSMFGFFVQAIVTGKGPIENLVDHLADPVANN 160
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 106/190 (55%), Gaps = 10/190 (5%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
SE EYL ++PG++ +DP L K+ +Y+ ELIH RWAMLGAAG + E
Sbjct: 41 SEPKEYLN-DLPGNFNFDPLELGKEKGTLQRYREAELIHCRWAMLGAAGCLAVEVLGL-- 97
Query: 126 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 185
W+ + G+ +FG +P ++ + E+V + AE R N D+E
Sbjct: 98 ------GNWYDAPLWAVTGDKPTWFGIEVPFDIATILGVEVVAMAVAEGLRNDN-QDMEK 150
Query: 186 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 245
+L+PGG FDPLG +KDP F K+KE+KNGRLAM A LGF Q TG+ +E L HL
Sbjct: 151 RLYPGGAFDPLGFSKDPKSFEDKKLKELKNGRLAMVACLGFAGQHAATGKPILEALGDHL 210
Query: 246 SDPFANNLLT 255
S PF NN T
Sbjct: 211 SSPFFNNFAT 220
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/267 (38%), Positives = 144/267 (53%), Gaps = 44/267 (16%)
Query: 17 LLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEV 76
++ S + S RK + + + +PP+ + G +R+++ + YL G +
Sbjct: 22 IIGSRISQSVTRKASFV--VRAASTPPVKQ----GANRQLWFAS-----KQSLSYLDGRL 70
Query: 77 PGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGP 130
PGD+G+DP GLS P+ K+ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 71 PGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQE 129
Query: 131 EAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--------- 180
A+ WF+TG + G T NY+ N + + E+ L+G AE+ R +
Sbjct: 130 TALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQ 183
Query: 181 --LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
L LE D +PGGP F+PLG KD LK+KEIKNGRLAM A+LG+F+QA
Sbjct: 184 YFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQA 243
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVI 257
VTG GP +NL HL+DP NN+LT +
Sbjct: 244 LVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/267 (38%), Positives = 144/267 (53%), Gaps = 44/267 (16%)
Query: 17 LLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEV 76
++ S + S RK + + + +PP+ + G +R+++ + YL G +
Sbjct: 22 IIGSRISQSVTRKASFV--VRAASTPPVKQ----GANRQLWFAS-----KQSLSYLDGSL 70
Query: 77 PGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGP 130
PGD+G+DP GLS P+ K+ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 71 PGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQE 129
Query: 131 EAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--------- 180
A+ WF+TG + G T NY+ N + + E+ L+G AE+ R +
Sbjct: 130 TALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQ 183
Query: 181 --LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
L LE D +PGGP F+PLG KD LK+KEIKNGRLAM A+LG+F+QA
Sbjct: 184 YFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQA 243
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVI 257
VTG GP +NL HL+DP NN+LT +
Sbjct: 244 LVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|302854483|ref|XP_002958749.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
gi|300255924|gb|EFJ40205.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
Length = 2775
Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats.
Identities = 76/146 (52%), Positives = 95/146 (65%), Gaps = 6/146 (4%)
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL 168
A G + PE +K G G EAVWFK GA + L+Y G + N+V + +++L
Sbjct: 2614 ALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVIL 2672
Query: 169 VGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 226
+G E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 2673 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 2732
Query: 227 FLQAYVTGEGPVENLAKHLSDPFANN 252
F+QA VTG+GP+ENL HL++P NN
Sbjct: 2733 FVQAIVTGKGPIENLNDHLANPAVNN 2758
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 139/270 (51%), Gaps = 39/270 (14%)
Query: 11 QVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPE 70
+V T LS +++ R +P SP + + +R +LP GL + P
Sbjct: 11 RVLHTCTLSPKPVTALSRSMAAIPGHHVFQSPRARIAVRASTERATWLP-GL----DPPP 65
Query: 71 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 130
+L G +PGD+G+DP GL ++P + Y EL+H R+AM G AG + + G N P
Sbjct: 66 HLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLP 125
Query: 131 EAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------- 182
VWF+ GA D NT F +++L+G AE R + ++
Sbjct: 126 --VWFEAGATKFDFANTTALF------------FVQLLLMGFAETKRYMDFINPGSQAEE 171
Query: 183 -----LEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
+E L +PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +QA
Sbjct: 172 GTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQA 231
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGN 260
VT GP++NL HLSDPF N++ +S +
Sbjct: 232 SVTHVGPIDNLLTHLSDPFNKNIIHTLSSS 261
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 139/270 (51%), Gaps = 39/270 (14%)
Query: 11 QVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPE 70
+V T LS +++ R +P SP + + +R +LP GL + P
Sbjct: 11 RVLHTCTLSPKPVTALSRSMAAIPGHHVFQSPRARIAVRASTERATWLP-GL----DPPP 65
Query: 71 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 130
+L G +PGD+G+DP GL ++P + Y EL+H R+AM G AG + + G N P
Sbjct: 66 HLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDFIRVSGINNLP 125
Query: 131 EAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------- 182
VWF+ GA D NT F +++L+G AE R + ++
Sbjct: 126 --VWFEAGATKFDFANTTALF------------FVQLLLMGFAETKRYMDFINPGSQAEE 171
Query: 183 -----LEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
+E L +PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +QA
Sbjct: 172 GTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQA 231
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVISGN 260
VT GP++NL HLSDPF N++ +S +
Sbjct: 232 SVTHVGPIDNLLTHLSDPFNKNIIHTLSSS 261
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/270 (37%), Positives = 147/270 (54%), Gaps = 44/270 (16%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLT 73
+ + S P+ S+ ++K + + + +PP+ + G +R +++ S+ YL
Sbjct: 19 RQIFGSKPVASASQKKSSFV--VKAAAAPPVKQ----GANRPLWVAS-----SQSLSYLD 67
Query: 74 GEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGAN 127
G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 68 GSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLI 126
Query: 128 CGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------ 180
A+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 127 PAETALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPGSM 180
Query: 181 -----LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F
Sbjct: 181 GKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240
Query: 228 LQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 241 IQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|222618804|gb|EEE54936.1| hypothetical protein OsJ_02493 [Oryza sativa Japonica Group]
Length = 207
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 97/151 (64%), Gaps = 6/151 (3%)
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA 164
WAMLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 46 WAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 104
Query: 165 -EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++VL+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF
Sbjct: 105 VQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 164
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP + L+DP NN
Sbjct: 165 SMFGFFVQAIVTGKGPPREPRRPLADPVNNN 195
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/270 (37%), Positives = 146/270 (54%), Gaps = 44/270 (16%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLT 73
+ + S P+ S+ ++K + + + +PP+ + G +R ++ S+ YL
Sbjct: 19 RQIFGSKPVASASQKKSSFV--VKAAATPPVKQ----GANRPLWFAS-----SQSLSYLD 67
Query: 74 GEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGAN 127
G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 68 GSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLI 126
Query: 128 CGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------ 180
A+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 127 PAETALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPGSM 180
Query: 181 -----LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F
Sbjct: 181 GKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240
Query: 228 LQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 241 IQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 110/198 (55%), Gaps = 10/198 (5%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGDYG+DP GL ++P+D Y EL+H R+AM G AG + + G
Sbjct: 60 PAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGIGN 119
Query: 129 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKL 187
P VWF+ GA D NT F + + + V + L +E L
Sbjct: 120 LP--VWFEAGATKFDFANTTALFFVQLLLMGFVETKRYMDFVSPGSQAKEGTFLGIEASL 177
Query: 188 ------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
+PGGP F+P+GLAKD + +K+KEIKNGRLAM AMLGF +QA VT GP++N
Sbjct: 178 EGLQPGYPGGPLFNPMGLAKDIENANEVKLKEIKNGRLAMVAMLGFIVQASVTHAGPIDN 237
Query: 241 LAKHLSDPFANNLLTVIS 258
L HLSDPF N++ ++
Sbjct: 238 LLTHLSDPFNKNIIHALT 255
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/270 (37%), Positives = 146/270 (54%), Gaps = 44/270 (16%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLT 73
+ + + P +S+ RRK + + + +PP+ + G +R ++ S+ YL
Sbjct: 19 RQIFGTKPAVSTSRRKSSFV--VKATSTPPVKQ----GANRPLWFAS-----SQSLTYLD 67
Query: 74 GEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGAN 127
G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 68 GSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLI 126
Query: 128 CGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------ 180
A+ WF+TG + G T +Y+ N + + E+ L+G AE+ R+ +
Sbjct: 127 PAETALPWFQTGVIPPAG-TYSYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPGSM 180
Query: 181 -----LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
L LE +PGGPF +PLG K+ LK+KEIKNGRLAM A+LG+F
Sbjct: 181 GKQYFLGLEKGFSGSGEPAYPGGPFFNPLGFGKNEKSMKELKLKEIKNGRLAMLAILGYF 240
Query: 228 LQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 241 VQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 108/202 (53%), Gaps = 13/202 (6%)
Query: 55 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 113
R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG A
Sbjct: 31 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 90
Query: 114 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 173
G + E W+ ++G +FG +P +L + E V + AE
Sbjct: 91 GSLAVELLGY--------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAE 142
Query: 174 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
R D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q T
Sbjct: 143 GQRG----DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAAT 198
Query: 234 GEGPVENLAKHLSDPFANNLLT 255
G+GP+ L +HL++P+ N T
Sbjct: 199 GKGPIAALGEHLANPWGANFAT 220
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 108/192 (56%), Gaps = 13/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA N
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEALGY--GNW 68
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNG-LDLEDK 186
W T G Y G +P NL + E + + E R NG D E +
Sbjct: 69 VSAQKWAAT-----PGGQATYLGNPVPWGNLPIILAVEFIAIAFVESQR--NGESDPEKR 121
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 245
+PGGPFDPLG +K + LK+KEIKNGRLA+ A LGF +QA G GP+ENL HL
Sbjct: 122 KYPGGPFDPLGFSKGAN-LEELKLKEIKNGRLALVAFLGFVVQAVAYPGTGPLENLKTHL 180
Query: 246 SDPFANNLLTVI 257
+DP+ N + V+
Sbjct: 181 ADPWHNTIAHVL 192
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 115/210 (54%), Gaps = 34/210 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGDYG+DP GL ++P D Y EL+H R+AM G AG + + G +
Sbjct: 62 PPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGISN 121
Query: 129 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAE---YYRITNG---- 180
P VWF+ GA D NT F +++L+G E Y I N
Sbjct: 122 LP--VWFEAGATKFDFANTTALF------------FVQLLLMGFVETKRYMDIVNPGSQA 167
Query: 181 -----LDLEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
L +E L +PGGP F+P+GLAKD +K+KEIKNGRLAM AMLGFF+
Sbjct: 168 EEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIKNAHEVKLKEIKNGRLAMVAMLGFFV 227
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
QA VT GP++NL HLSDPF NN++ +
Sbjct: 228 QASVTHVGPIDNLLIHLSDPFNNNIIHAFT 257
>gi|307106821|gb|EFN55066.1| hypothetical protein CHLNCDRAFT_35848 [Chlorella variabilis]
Length = 219
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 112/206 (54%), Gaps = 16/206 (7%)
Query: 52 PDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
P R + G L S+ P YL +P YG+DP GL+K+ +++ E+IH RWAML
Sbjct: 20 PRARTVMKAGNWLPGSDTPAYLE-NLPASYGFDPLGLAKEAPSLQRFKESEVIHGRWAML 78
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
GAAG + E +G W+ L+ G + YFG +IP +L E +
Sbjct: 79 GAAGVLGVEVLG-YGN-------WYDAPLPLVQGGSATYFGASIPFDLGTLAAIEFAAMA 130
Query: 171 GAEYYRITNGLDLEDKLHPGGPFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQ 229
GAE +R + E +++PGGPFDP G++K + D+ L+ KEIKNGRLAM A LGF Q
Sbjct: 131 GAESFR--GAAEPEKRVYPGGPFDPAGMSKGNQDE---LRTKEIKNGRLAMIACLGFVAQ 185
Query: 230 AYVTGEGPVENLAKHLSDPFANNLLT 255
TG P+E L HL++P N T
Sbjct: 186 HAATGASPLEALGAHLANPMVANFAT 211
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 137/249 (55%), Gaps = 41/249 (16%)
Query: 36 LSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + SPP+ ++ G +R+++ + YL G +PGD+G+DP GLS P+
Sbjct: 42 VKAASSPPVKQN---GANRQLWFAS-----KQSLSYLDGSLPGDFGFDPLGLSD-PEGTG 92
Query: 96 -----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLN 148
++ AY E+I+ R+AMLGAAG I PE K G A+ WF+TG + G T N
Sbjct: 93 GFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYN 151
Query: 149 YFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLEDKL-------HPG 190
Y+ N + + E+ +G AE+ R + L LE L +PG
Sbjct: 152 YWADNYTL-----FVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPG 206
Query: 191 GP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 249
GP F+PLG KD LK+KE+KNGRLAM A+LG+F+QA VTG GP +NL HL+DP
Sbjct: 207 GPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPV 266
Query: 250 ANNLLTVIS 258
NN+LT ++
Sbjct: 267 NNNILTSLN 275
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 122/214 (57%), Gaps = 33/214 (15%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 123
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K
Sbjct: 364 SYLDGSLPGDFGFDPLGLSD-PEGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEILGK 422
Query: 124 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
G A+ WF+TG + G T NY+ N + + E+ +G AE+ R+ +
Sbjct: 423 AGLIPAETALPWFQTGVIPPAG-TYNYWADNYTL-----FVMEMAFMGFAEHRRLQDWYN 476
Query: 181 ---------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L LE L +PGGP F+PLG KD LK+KE+KNGRLAM A+
Sbjct: 477 PGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 536
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 537 LGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 570
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 108/202 (53%), Gaps = 13/202 (6%)
Query: 55 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 113
R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG A
Sbjct: 27 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 86
Query: 114 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 173
G + E W+ ++G +FG +P +L + E V + AE
Sbjct: 87 GSLAVELLGY--------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAE 138
Query: 174 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
R D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q T
Sbjct: 139 GQRG----DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAAT 194
Query: 234 GEGPVENLAKHLSDPFANNLLT 255
G+GP+ L +HL++P+ N T
Sbjct: 195 GKGPIAALGEHLANPWGANFAT 216
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 136/248 (54%), Gaps = 41/248 (16%)
Query: 36 LSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 95
+ + SPP+ ++ G +R+++ + YL G +PGD+G+DP GLS P+
Sbjct: 42 VKAASSPPVKQN---GANRQLWFAS-----KQSLSYLDGSLPGDFGFDPLGLSD-PEGTG 92
Query: 96 -----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLN 148
++ AY E+I+ R+AMLGAAG I PE K G A+ WF+TG + G T N
Sbjct: 93 GFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYN 151
Query: 149 YFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLEDKL-------HPG 190
Y+ N + + E+ +G AE+ R + L LE L +PG
Sbjct: 152 YWADNYTL-----FVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPG 206
Query: 191 GP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 249
GP F+PLG KD LK+KE+KNGRLAM A+LG+F+QA VTG GP +NL HL+DP
Sbjct: 207 GPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPV 266
Query: 250 ANNLLTVI 257
NN+LT +
Sbjct: 267 NNNILTSL 274
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 108/192 (56%), Gaps = 13/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA N
Sbjct: 54 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGY--GNW 111
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGL-DLEDK 186
W T G Y G +P NL + E + + AE R NG D E +
Sbjct: 112 VSAQKWAAT-----PGGQATYLGNPVPWGNLPVILAIEFLAIAFAESQR--NGEPDPEKR 164
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 245
+PGG FDPLG +K + LK+KEIKNGRLA+ A LGF +QA G GP+ENL HL
Sbjct: 165 KYPGGAFDPLGFSKGAN-LEELKLKEIKNGRLALVAFLGFAVQAIAYPGTGPLENLKTHL 223
Query: 246 SDPFANNLLTVI 257
+DP+ N + VI
Sbjct: 224 ADPWHNTIAHVI 235
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 146/271 (53%), Gaps = 46/271 (16%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLT 73
+ + S P+ S+ ++K + + + +PP+ + G +R ++ S+ YL
Sbjct: 19 RQIFGSKPVASASQKKSSFV--VKATATPPVKQ----GANRPLWFAS-----SQSLSYLD 67
Query: 74 GEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGAN 127
G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 68 GSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGL- 125
Query: 128 CGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----- 180
PE WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 126 IPPETALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPGS 179
Query: 181 ------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 226
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+
Sbjct: 180 MGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGY 239
Query: 227 FLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 240 FIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/268 (39%), Positives = 141/268 (52%), Gaps = 46/268 (17%)
Query: 17 LLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEV 76
L + P S R+ + + +PP+ + G DR+++ + YL G +
Sbjct: 22 LGARPSFGSSRKSASFV--VRAEATPPVKQ----GADRQLWFAS-----KQSLSYLDGSL 70
Query: 77 PGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGP 130
PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE F G P
Sbjct: 71 PGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGL-IPP 128
Query: 131 EAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-------- 180
E WFKTG + G T NY+ P L + E+ L+G AE+ R +
Sbjct: 129 ETALPWFKTGVIPPAG-TYNYWAD--PYTLF---VFEMALMGFAEHRRFQDWAKPGSMGK 182
Query: 181 ---LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 229
L LE D +PGGP F+PLG KD LK+KEIKNGRLAM A+LG+F+Q
Sbjct: 183 QYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQ 242
Query: 230 AYVTGEGPVENLAKHLSDPFANNLLTVI 257
VTG GP +NL HLSDP NN+LT +
Sbjct: 243 GLVTGVGPYQNLLDHLSDPVNNNVLTSL 270
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 126/243 (51%), Gaps = 39/243 (16%)
Query: 38 PSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 97
PSP + +G R +LP GL + P YL G +PGD+G+DP GL ++P+ Y
Sbjct: 46 PSPRARVVAVRAAGTQRATWLP-GL----DPPPYLDGTLPGDFGFDPLGLGEEPEALKWY 100
Query: 98 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPI 156
EL+H R+AM G AG + + G + P VWF+ GA D NT F
Sbjct: 101 VQAELVHCRFAMAGVAGILFTDLLRVSGNSDLP--VWFEAGAAKFDFANTTALF------ 152
Query: 157 NLVFAVIAEIVLVGGAEYYRITNG------------LDLEDKL------HPGGP-FDPLG 197
++ L+G AE R + + LE L +PGGP F+PLG
Sbjct: 153 ------FVQLFLMGFAETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLG 206
Query: 198 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
LAKD + K+KEIKNGRLAM AMLGF +QA VT GP++NL HLSDPF N++
Sbjct: 207 LAKDIENAHDEKLKEIKNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTF 266
Query: 258 SGN 260
S +
Sbjct: 267 SSS 269
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 107/188 (56%), Gaps = 12/188 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G PGD+G+DP GL+ P++ +++ E+ H RWAML G ++PEA
Sbjct: 26 PVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCVPGVLVPEALGL----- 80
Query: 129 GPEAVWFKTGALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDK 186
W K + G YFG +P NL + E + + AE+ R T D E K
Sbjct: 81 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQR-TMEKDPEKK 136
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY-VTGEGPVENLAKHL 245
+PGG FDPLG +KDP + K+KEI+NGRLAM A +GF +Q G GP+ENLA HL
Sbjct: 137 KYPGGAFDPLGFSKDPVKLEEYKLKEIRNGRLAMLAFVGFCVQQSPYPGTGPLENLASHL 196
Query: 246 SDPFANNL 253
+DP+ NN+
Sbjct: 197 ADPWHNNI 204
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 55 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 113
R+ + G L S+ P +L ++PG+YG+DP L K P ++ E+IH RWAMLG A
Sbjct: 31 RVVMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVA 90
Query: 114 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 173
G + E W+ + G +FG +P +L + E V + AE
Sbjct: 91 GALAVELLGY--------GNWYDAPLWAVTGGKATWFGIEVPFDLNTLLAFEFVAMAAAE 142
Query: 174 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
R D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q T
Sbjct: 143 GQRN----DAGGVIYPGGAFDPLGFAKDSSKAGELKLKEIKNGRLAMVAFLGFIAQHAAT 198
Query: 234 GEGPVENLAKHLSDPFANNLLT 255
G+GP+ L +HL++P+ N T
Sbjct: 199 GKGPLAALGEHLANPWGANFAT 220
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 126/243 (51%), Gaps = 39/243 (16%)
Query: 38 PSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 97
PSP + +G R +LP GL + P YL G +PGD+G+DP GL ++P+ Y
Sbjct: 92 PSPRARVVAVRAAGTQRATWLP-GL----DPPPYLDGTLPGDFGFDPLGLGEEPEALKWY 146
Query: 98 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPI 156
EL+H R+AM G AG + + G + P VWF+ GA D NT F
Sbjct: 147 VQAELVHCRFAMAGVAGILFTDLLRVSGNSDLP--VWFEAGAAKFDFANTTALF------ 198
Query: 157 NLVFAVIAEIVLVGGAEYYRITNG------------LDLEDKL------HPGGP-FDPLG 197
++ L+G AE R + + LE L +PGGP F+PLG
Sbjct: 199 ------FVQLFLMGFAETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLG 252
Query: 198 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
LAKD + K+KEIKNGRLAM AMLGF +QA VT GP++NL HLSDPF N++
Sbjct: 253 LAKDIENAHDEKLKEIKNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTF 312
Query: 258 SGN 260
S +
Sbjct: 313 SSS 315
>gi|47026888|gb|AAT08668.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 237
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 108/186 (58%), Gaps = 12/186 (6%)
Query: 35 SLSPSPSPPLTKSSPS---GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 91
++ + + P T SS S GPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 19 TMRKTVAKPKTVSSGSPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADP 75
Query: 92 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 151
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 76 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 134
Query: 152 KN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFA 206
+ + A+ A ++VL+G E YR+ G ++ D L+PGG FDPLGLA DP FA
Sbjct: 135 NPSLVHAQSILAIWATQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPKAFA 194
Query: 207 LLKVKE 212
LKV E
Sbjct: 195 ELKVNE 200
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 103/190 (54%), Gaps = 12/190 (6%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
S+ P +L ++PG+YG+DP L K P ++ E+IH RWAMLG AG + E
Sbjct: 7 SDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVELLGY-- 64
Query: 126 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 185
W+ ++G +FG ++P +L + E V + AE R D
Sbjct: 65 ------GNWYDAPLWAVNGGKATWFGIDVPFDLNTLLAFEFVAMAAAEGQRG----DAGG 114
Query: 186 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 245
++PGG FDPLG AKD + LK+KE+KNGRLAM A LGF Q TG+GP+ L +HL
Sbjct: 115 VVYPGGAFDPLGFAKDASKSGELKLKEVKNGRLAMVAFLGFVAQHAATGKGPIAALGEHL 174
Query: 246 SDPFANNLLT 255
S+P+ N T
Sbjct: 175 SNPWGANFAT 184
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 120/230 (52%), Gaps = 33/230 (14%)
Query: 46 KSSPSGPDRRIFLPEGLLDRSEIPEYL----TGEVPGDYGYDPFGLSKKPDDFSKYQAYE 101
KS + R+ +LP S+IP +L + G++G+DP GL K P + YQ E
Sbjct: 13 KSVVTCVARQSWLPG-----SQIPAHLDTPSAQALAGNFGFDPLGLGKDPVALAWYQQAE 67
Query: 102 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 161
LIH R AM G AG +IP K GA PE W+ G + ++ N+ +G + + L
Sbjct: 68 LIHCRTAMTGVAGILIPGLLTKAGALNVPE--WYDAGKVAIE-NSFAPWGTLLAVQLFLC 124
Query: 162 VIAEIVLVGGAEYYRI----TNG-----LDLEDKL-------HPGGPFDPLGLAKDPDQF 205
E+ + I + G L E L +PGGPFDPLGL+K+ D++
Sbjct: 125 GFVEV-----KRWQDIRKPGSQGEPGSFLGFESSLKGTSEVGYPGGPFDPLGLSKEADKW 179
Query: 206 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
A K+KE+KNGRLAM A LGF Q Y TG GPV+NL HL DP+ N T
Sbjct: 180 ADWKLKEVKNGRLAMLAFLGFVAQKYATGAGPVDNLVAHLKDPWHVNYAT 229
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 109/192 (56%), Gaps = 13/192 (6%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA N
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGY--GNW 68
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNG-LDLEDK 186
W T G Y G +P + ++A E + + AE R NG D E +
Sbjct: 69 VSAQKWAAT-----PGGQATYLGNPVPWGTLPVILAVEFIAIAFAESQR--NGESDPEKR 121
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHL 245
+PGG FDP+G +K + LK+KEIKNGRLA+ A LGF +QA G GP+ENL HL
Sbjct: 122 KYPGGAFDPMGFSKGAN-LEELKLKEIKNGRLALVAFLGFAIQAIAYPGTGPLENLKTHL 180
Query: 246 SDPFANNLLTVI 257
+DP+ N + ++
Sbjct: 181 ADPWHNTIANIL 192
>gi|227206230|dbj|BAH57170.1| AT3G27690 [Arabidopsis thaliana]
Length = 160
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 99/149 (66%), Gaps = 6/149 (4%)
Query: 109 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 165
MLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 1 MLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 59
Query: 166 IVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
+VL+G E YRI G E D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+M
Sbjct: 60 VVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSM 119
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 120 FGFFVQAIVTGKGPIENLFDHIADPVANN 148
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 120/225 (53%), Gaps = 23/225 (10%)
Query: 46 KSSPSGPDRRIFLPEGLLDRSEIPEYL----TGEVPGDYGYDPFGLSKKPDDFSKYQAYE 101
KS + R+ +LP S+IP +L + G++G+DP GL K P YQ E
Sbjct: 19 KSVVTCVARQSWLPG-----SQIPAHLDTPAAQALAGNFGFDPLGLGKDPVALRWYQQAE 73
Query: 102 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 161
LIH R AM G AG +IP K GA PE W+ G + ++ N+ +G + + L
Sbjct: 74 LIHCRTAMAGVAGILIPGLLTKAGALNVPE--WYDAGKVAIE-NSFAPWGSLLAVQLFLC 130
Query: 162 VIAEI-----VLVGGAE-----YYRITNGLDLEDKL-HPGGPFDPLGLAKDPDQFALLKV 210
E + G++ + L +L +PGGPFDPLGL+K+ D++A K+
Sbjct: 131 GFVEAKRWQDIRKPGSQGEPGSFLGFEASLKGTSELGYPGGPFDPLGLSKEADKWADWKL 190
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
KE+KNGRLAM A LGF Q Y TG GPV+NLA HL DP+ N T
Sbjct: 191 KEVKNGRLAMLAFLGFVAQKYATGAGPVDNLAAHLKDPWHVNYAT 235
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 117/227 (51%), Gaps = 31/227 (13%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P PDR ++ P S PE+L G +PGD+G+DP GL P+ EL+HAR
Sbjct: 47 CEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHAR 101
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAMLG +G +IPE K G W++ G T YF P L +A +
Sbjct: 102 WAMLGVSGILIPELLEKMGYV--ENYSWYEAG-------TQEYFAD--PTTLFIVQLALM 150
Query: 167 VLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVK 211
V G + + N +D+E KL +PGG FDP+ + P+ +L+ K
Sbjct: 151 GWVEGRRWADLVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTK 210
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
EIKNGRLAM A +GF+ QA TG+GP+ENL HL+DP N+ + +
Sbjct: 211 EIKNGRLAMLAFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFT 257
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 115/210 (54%), Gaps = 34/210 (16%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
SEIP YL GE+PGD+G+DP L + P YQ EL + RWAML AAG + + G
Sbjct: 45 SEIPSYLKGELPGDFGFDPLRLGEDPAALKWYQQAELQNGRWAMLAAAGILFVDLLGHLG 104
Query: 126 ANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN---- 179
A GP A WFK + YF P + +F I E++L E R +
Sbjct: 105 AG-GPAAATPWFKA-------SDFTYFA---PTSTLF--IVELLLFAWVEVRRYQDMVKP 151
Query: 180 GLDLEDKL-------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 226
G +D + +PGG FDPLG +K A LK+KEIKN RLAM A+LGF
Sbjct: 152 GSTNQDPIFSQYSLPSGNEPGYPGGIFDPLGYSK--GNMAELKLKEIKNARLAMLAVLGF 209
Query: 227 FLQAYVTGEGPVENLAKHLSDPFANNLLTV 256
F+QA TG+ P+++L+ HL+DP++NN+ +
Sbjct: 210 FVQAKTTGKTPLDSLSSHLADPWSNNVFGI 239
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 145/270 (53%), Gaps = 44/270 (16%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLT 73
+ + S P+ S+ ++K + + + +PP+ + G +R ++ S+ YL
Sbjct: 19 RQIFGSKPVASASQKKSSFV--VKAAATPPVKQ----GANRPLWFAS-----SQSLSYLD 67
Query: 74 GEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGAN 127
G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 68 GSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLI 126
Query: 128 CGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------ 180
A+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 127 PAETALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPGSM 180
Query: 181 -----LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F
Sbjct: 181 GKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 240
Query: 228 LQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
+Q VTG GP +NL HL+ P NN+LT +
Sbjct: 241 IQGLVTGVGPYQNLLDHLAGPVNNNVLTSL 270
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 109/202 (53%), Gaps = 21/202 (10%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 112
+R+++ P GL+ + P +L G +PGD+GYDP GL+K P ++Y+ E+++ RWAMLG
Sbjct: 37 ERKLWAP-GLV---KAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGV 92
Query: 113 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 172
AG + PE + W + G Y G +P + E +
Sbjct: 93 AGMLAPELVG--------QGTWLSAQDWAVTGGKPTYLGNELPYGFGTVLAVEFFCL--- 141
Query: 173 EYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
+ I+ GL+ + +++PGG FDPLG KD + KVKE++NGRLAM A +G + Q
Sbjct: 142 SWVEISRGLEKDPMKRIYPGGAFDPLGFGKDE----VNKVKELRNGRLAMVAFVGMWCQG 197
Query: 231 YVTGEGPVENLAKHLSDPFANN 252
G GPV NL HL+DP NN
Sbjct: 198 IHVGGGPVSNLMDHLADPLHNN 219
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 112/229 (48%), Gaps = 37/229 (16%)
Query: 48 SPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 107
S + PDR I+ P S P +L G +PGD+G+DPFGL P+ EL+H RW
Sbjct: 51 SAAAPDRPIWFPG-----SVPPPWLDGSLPGDFGFDPFGLGSDPESLRWNVQAELVHCRW 105
Query: 108 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 167
AMLGAAG IPE K G P W+ G +T F I E++
Sbjct: 106 AMLGAAGIFIPEFLTKIGILSTPS--WYTAGEQQYFTDTTTLF------------IIELI 151
Query: 168 LVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLK 209
L+G AE R N L D +PGG FDPLG P++ L+
Sbjct: 152 LIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKLKELR 211
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
KEIKNGRLAM A++G + QA TG GP++NL HL+DP N+ +
Sbjct: 212 TKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHANIFQAFT 260
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 123
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 67 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 124 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
G A+ WF+TG G T NY+ + + + E+ L+G AE+ R +
Sbjct: 126 AGLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-----FVFEMALMGFAEHRRFQDWAK 179
Query: 181 ---------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+
Sbjct: 180 PGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 239
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 123
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 67 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 124 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
G A+ WF+TG G T NY+ + + + E+ L+G AE+ R +
Sbjct: 126 AGLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-----FVFEMALMGFAEHRRFQDWAK 179
Query: 181 ---------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+
Sbjct: 180 PGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 239
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGYFVQALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 123
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 67 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 124 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
G A+ WF+TG + T NY+ + + + E+ L+G AE+ R +
Sbjct: 126 AGLIPQETALPWFRTG-FIPPAGTYNYWADSYTL-----FVFEMALMGFAEHRRFQDWAK 179
Query: 181 ---------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+
Sbjct: 180 PGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 239
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 114/242 (47%), Gaps = 37/242 (15%)
Query: 35 SLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 94
S +P+ T + PDR ++ P S P +L G +PGD+G+DP GL+ P+
Sbjct: 46 STTPTARSATTVCVAADPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESL 100
Query: 95 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 154
Q EL+H RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 101 RWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF---- 154
Query: 155 PINLVFAVIAEIVLVGGAEYYRIT----------------NGLDLEDKLHPGG-PFDPLG 197
I E+VL+G AE R N L D +PGG FDPLG
Sbjct: 155 --------IVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 206
Query: 198 LAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 256
P + L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP +
Sbjct: 207 WGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAA 266
Query: 257 IS 258
S
Sbjct: 267 FS 268
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 123
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 67 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 124 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
G A+ WF+TG G T NY+ + + + E+ L+G AE+ R +
Sbjct: 126 AGLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-----FVFEMALMGFAEHRRFQDWAK 179
Query: 181 ---------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+
Sbjct: 180 PGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 239
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGYFVQALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 130/256 (50%), Gaps = 39/256 (15%)
Query: 25 SPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 84
S RR + +PSP + +G R +LP GL + P +L G +PGD+G+DP
Sbjct: 30 SSRRTLAMPAHHAPSPRARVVAVRAAGTQRPTWLP-GL----DPPPHLDGTLPGDFGFDP 84
Query: 85 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD- 143
GL + P Y EL+H R+AM G AG + + G + P VWF+ GA +
Sbjct: 85 LGLGEDPASLKWYVQAELVHCRFAMAGVAGILFTDLLRVSGNSDLP--VWFEAGAAKFEF 142
Query: 144 GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------------LDLEDKL---- 187
NT F +++L+G AE R + + LE L
Sbjct: 143 ANTTALF------------FVQLLLMGFAETKRYMDFKNPGSQAEEGTFIGLEAALAGQQ 190
Query: 188 --HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 244
+PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +QA VT GP++NL H
Sbjct: 191 PGYPGGPLFNPLGLAKDIENAHEEKLKEIKNGRLAMVAMLGFMVQASVTHAGPIDNLLTH 250
Query: 245 LSDPFANNLLTVISGN 260
LSDPF N++ S +
Sbjct: 251 LSDPFNKNIIHAFSSS 266
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 125/242 (51%), Gaps = 39/242 (16%)
Query: 39 SPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 98
SP + +G R +LP GL + P YL G +PGD+G+DP GL ++P+ Y
Sbjct: 47 SPRARVVAVRAAGTQRATWLP-GL----DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYV 101
Query: 99 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPIN 157
EL+H R+AM G AG + + G + P VWF+ GA D NT F
Sbjct: 102 QAELVHCRFAMAGVAGILFTDLLRVSGNSDLP--VWFEAGAAKFDFANTTALF------- 152
Query: 158 LVFAVIAEIVLVGGAEYYRITNG------------LDLEDKL------HPGGP-FDPLGL 198
++ L+G AE R + + LE L +PGGP F+PLGL
Sbjct: 153 -----FVQLFLMGFAETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGL 207
Query: 199 AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
AKD + K+KEIKNGRLAM AMLGF +QA VT GP++NL HLSDPF N++ S
Sbjct: 208 AKDIENAHDEKLKEIKNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFS 267
Query: 259 GN 260
+
Sbjct: 268 SS 269
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 117/237 (49%), Gaps = 33/237 (13%)
Query: 38 PSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 97
P+P S+ + RR++ P E P YL GE+ GDYG+DP GL KP+ Y
Sbjct: 28 PAPRSTFQVSAAASQGRRLWAPG-----VEAPSYLNGELAGDYGWDPLGLGAKPEALKWY 82
Query: 98 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 157
+ EL+HARWAML AG + E V+F L + +N+ G +N
Sbjct: 83 RQAELVHARWAMLAVAGILAQEIVK--------PGVFFYNAGLPENLPGINFGGPEGKVN 134
Query: 158 LVFAVIAEIVLVGGAEYYRITNGLDLEDKL-----------------HPGGPFDPLGLAK 200
L + E +L E R + + +D + +PGG FDP G +K
Sbjct: 135 LGGLLAWEFLLFHWVEVRRWQD-IKKKDSVNQDPIFKGNKVPNPELGYPGGIFDPFGFSK 193
Query: 201 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
F ++ KEIKNGRLAM A +GF +QA TG+GP+ NL HL++PF NN+ I
Sbjct: 194 --GNFKEVQTKEIKNGRLAMVAFVGFIIQAQATGQGPLANLGAHLANPFGNNITKNI 248
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 121/228 (53%), Gaps = 32/228 (14%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHAR 106
DR++F + YL G PGD+GYDP GL K P+ K+ AY E+IH R
Sbjct: 75 DRQLFFSD-----KAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWLAYSEVIHCR 128
Query: 107 WAMLGAAGFIIPEAFNKFG---ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 163
+AMLG AG + PE K G A G VWFKTG + +G +Y+ + + + V+
Sbjct: 129 YAMLGMAGMVAPEILGKLGLIPAETG--LVWFKTGVIPSEGQ-YDYWASPLALFWIEVVL 185
Query: 164 AEIVLVGGAEYYRITNG------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLK 209
+ + + YR L LE D +PGG F+ LG KD LK
Sbjct: 186 MQFAELRRWQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLK 245
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
+KE+KNGRLAM A LGFF+QA TGEGP +NL HL+DPF NN+LT
Sbjct: 246 LKELKNGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTF 293
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 127/261 (48%), Gaps = 61/261 (23%)
Query: 43 PLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD---------- 92
P PS PDR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 40 PKKSIKPSTPDRPLWYP-----GAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLD 94
Query: 93 ---------------------------------DFSKYQAYELIHARWAMLGAAGFIIPE 119
+++ ELIH RWAML G + E
Sbjct: 95 QNLAKNLAGDIIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVE 154
Query: 120 AFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT 178
W G + L++G++ Y G+ +P ++ + E V++G E+ R
Sbjct: 155 WLTG--------VTWQDAGKVELVEGSS--YLGQPLPFSITALIWIEAVIIGYIEFQRNA 204
Query: 179 NGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237
LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA+VTG+GP
Sbjct: 205 E-LDPEKRLYPGGQFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGP 263
Query: 238 VENLAKHLSDPFANNLLTVIS 258
+ N A HLSDP ++ +S
Sbjct: 264 LNNWATHLSDPLHTTIIDNLS 284
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 113/228 (49%), Gaps = 37/228 (16%)
Query: 39 SPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 98
S S L ++ + P+R I+ P S PE+L G +PGD+G+DP GLS PD
Sbjct: 36 SRSAALVRAVAADPERPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNA 90
Query: 99 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 158
EL+H RWAMLGAAG IPE K G P W+ G YF + +
Sbjct: 91 QAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAG-------EQEYFTDKTTLFV 141
Query: 159 VFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK- 200
V E++L+G AE R N L D +PGG FDPLG
Sbjct: 142 V-----ELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSG 196
Query: 201 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
P + L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 197 SPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 244
>gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-binding protein [Hyacinthus orientalis]
Length = 156
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 114 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVG 170
G + PE + G G EAVWFK GA + L+Y G + + A+ A +++L+G
Sbjct: 2 GCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMG 60
Query: 171 GAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAM +M GFF+
Sbjct: 61 AVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMLSMFGFFV 120
Query: 229 QAYVTGEGPVENLAKHLSDPFANN 252
QA VTG+GP+ENLA HL+DP NN
Sbjct: 121 QAIVTGKGPLENLADHLADPVNNN 144
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 121/228 (53%), Gaps = 32/228 (14%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHAR 106
DR++F + YL G PGD+GYDP GL K P+ K+ AY E+IH R
Sbjct: 53 DRQLFFSD-----KAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWLAYSEVIHCR 106
Query: 107 WAMLGAAGFIIPEAFNKFG---ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 163
+AMLG AG + PE K G A G VWFKTG + +G +Y+ + + + V+
Sbjct: 107 YAMLGMAGMVAPEILGKLGLIPAETG--LVWFKTGVIPSEGQ-YDYWASPLALFWIEVVL 163
Query: 164 AEIVLVGGAEYYRITNG------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLK 209
+ + + YR L LE D +PGG F+ LG KD LK
Sbjct: 164 MQFAELRRWQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLK 223
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
+KE+KNGRLAM A LGFF+QA TGEGP +NL HL+DPF NN+LT
Sbjct: 224 LKELKNGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTF 271
>gi|13676408|dbj|BAB41193.1| type III chlorophyll a/b-binding protein [Amaranthus tricolor]
Length = 156
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 100/157 (63%), Gaps = 8/157 (5%)
Query: 79 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 138
DYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+ E VWFK G
Sbjct: 1 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAG 60
Query: 139 ALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGLD---LEDKLHPGGP 192
A + L+Y G + + AV+ ++VL+G E +RI NGLD + L+PGG
Sbjct: 61 AQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-NGLDGVGEGNDLYPGGQ 119
Query: 193 -FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+
Sbjct: 120 YFDPLGLADDPVPFAELKVKEIKNGRLAMFSMFGFFV 156
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 114/224 (50%), Gaps = 37/224 (16%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 112
DR ++LP SE P++L G +PGDYG+DP L+ +P + EL+H RWAMLGA
Sbjct: 13 DRPLWLPG-----SEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGA 67
Query: 113 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 172
AG IPE K G P W+K G YF + I E++L+ A
Sbjct: 68 AGIFIPELLTKIGILNTPS--WYKAG-------DATYFADQGTL-----FIVELLLMAWA 113
Query: 173 EYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIK 214
E R N L D +PGG FDPLG D+ ++ KE+K
Sbjct: 114 ESRRWADIARPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVK 173
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
NGRLAM A+LG F+QA VT GP++NL HL+DP+ +L +S
Sbjct: 174 NGRLAMLAVLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSVS 217
>gi|149392733|gb|ABR26169.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 144
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/135 (55%), Positives = 92/135 (68%), Gaps = 10/135 (7%)
Query: 123 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 179
KFG EAVWFK G+ + L+Y G I + A+ A ++VL+G E YRI
Sbjct: 3 KFG-----EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG 57
Query: 180 G--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237
G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP
Sbjct: 58 GPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 117
Query: 238 VENLAKHLSDPFANN 252
+ENLA HL+DP NN
Sbjct: 118 LENLADHLADPVNNN 132
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 103/178 (57%), Gaps = 12/178 (6%)
Query: 78 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 137
GD+G+DP GL + P++ +Y+ ELIH RWAML G ++PEA FG W K
Sbjct: 1 GDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-FGN-------WVKA 52
Query: 138 GALL-LDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDP 195
+ G Y G +P L ++ E + + E+ R D E + +PGG FDP
Sbjct: 53 QEWAAVPGGQATYLGNPVPWGTLPTILVIEFLAIAFVEHQRSMEK-DPEKRKYPGGAFDP 111
Query: 196 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANN 252
LG +KDP +F LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+ N
Sbjct: 112 LGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNK 169
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 114/226 (50%), Gaps = 37/226 (16%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 112
DR ++LP SE P++L G +PGDYG+DP L+ +P + EL+H RWAMLGA
Sbjct: 64 DRPLWLPG-----SEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGA 118
Query: 113 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 172
AG IPE K G P W+K G YF + I E++L+ A
Sbjct: 119 AGIFIPELLTKIGILNTPS--WYKAG-------DATYFADQGTL-----FIVELLLMAWA 164
Query: 173 EYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIK 214
E R N L D +PGG FDPLG D+ ++ KE+K
Sbjct: 165 ESRRWADIARPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVK 224
Query: 215 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
NGRLAM A+LG F+QA VT GP++NL HL+DP+ +L + G
Sbjct: 225 NGRLAMLAVLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSLFGK 270
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 142/271 (52%), Gaps = 46/271 (16%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLT 73
+ +L S PL S R+ + + + +PP+ + G DR ++ + YL
Sbjct: 19 RQILGSRPLQSPSRKSSSFV--VRAASTPPVKQ----GADRPLWFAS-----KQSLTYLD 67
Query: 74 GEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGAN 127
G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGA G I PE K G
Sbjct: 68 GSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGKLGL- 125
Query: 128 CGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----- 180
PE WFKTG G T NY+ P L + E+ L+G AE+ R +
Sbjct: 126 IPPETALPWFKTGVFPPAG-TYNYWAD--PYTLF---VFEMALMGFAEHRRFQDWANPGS 179
Query: 181 ------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 226
L LE D +PGGP F+PLG KD LK+KE+KNGRLAM A+LG+
Sbjct: 180 MGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGY 239
Query: 227 FLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
F Q VTG GP++NL HL+DP NN++T +
Sbjct: 240 FAQGPVTGVGPLQNLLDHLADPVNNNIITSL 270
>gi|375152106|gb|AFA36511.1| light harvesting chlorophyll a/b-binding protein Lhcb1, partial
[Lolium perenne]
Length = 155
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 95/144 (65%), Gaps = 6/144 (4%)
Query: 114 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVG 170
G PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL+G
Sbjct: 1 GASFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 59
Query: 171 GAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+
Sbjct: 60 AVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 119
Query: 229 QAYVTGEGPVENLAKHLSDPFANN 252
QA VTG+GP+ENLA HL+DP NN
Sbjct: 120 QAIVTGKGPLENLADHLADPVNNN 143
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 118/225 (52%), Gaps = 31/225 (13%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 111
PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+HARWAML
Sbjct: 58 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLA 112
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 171
AG ++PE F G W+ D + YF P L+ A +A + V G
Sbjct: 113 VAGILLPEWFESLG--LIQNFSWY-------DAGSREYFAD--PTTLLVAQLALMGWVEG 161
Query: 172 AEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNG 216
+ + N +D++ KL +PGG FDP+ + P+ +L+ KEIKNG
Sbjct: 162 RRWADLVNPGSVDVDLKLPHKKKAMADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNG 221
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 261
RLAM A +G + QA TG+GP+ENLA H++DP N+ + S +
Sbjct: 222 RLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGS 266
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 116/232 (50%), Gaps = 37/232 (15%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P PDR ++ P S PE+L G +PGD+G+DP GL P+ + ELIH R
Sbjct: 49 CEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGR 103
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAML AAG +IPE + G F D T YF P L + ++
Sbjct: 104 WAMLAAAGILIPEWLERLG---------FIDNFNWFDAGTREYFAD--PTTL---FVVQL 149
Query: 167 VLVGGAEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALL 208
+L+G E R + +D++ KL +PGG FDP + P+ +
Sbjct: 150 ILMGWIEGRRWADMIKPGCVDIDPKLPHKTKPKPDVGYPGGLWFDPWNWGRGSPEPVMAI 209
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+ KEIKNGRLAM A +GF+ QA TGEGP++NL H++DP N+ + + +
Sbjct: 210 RTKEIKNGRLAMLAFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTSH 261
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 116/232 (50%), Gaps = 37/232 (15%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P PDR ++ P S PE+L G +PGD+G+DP GL P+ + ELIH R
Sbjct: 49 CEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGR 103
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAML AAG +IPE + G F D T YF P L + ++
Sbjct: 104 WAMLAAAGILIPEWLERLG---------FIDNFNWFDAGTREYFAD--PTTL---FVVQL 149
Query: 167 VLVGGAEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALL 208
+L+G E R + +D++ KL +PGG FDP + P+ +
Sbjct: 150 ILMGWIEGRRWADMIKPGCVDIDPKLPHKTKPKPDIGYPGGLWFDPWNWGRGSPEPVMAI 209
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+ KEIKNGRLAM A +GF+ QA TGEGP++NL H++DP N+ + + +
Sbjct: 210 RTKEIKNGRLAMLAFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTSH 261
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 120/214 (56%), Gaps = 33/214 (15%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 123
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 67 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 124 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
G A+ WF+TG G T NY+ + + + E+ L+G AE+ R +
Sbjct: 126 AGLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-----FVFEMALMGFAEHRRFQDWAK 179
Query: 181 ---------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+
Sbjct: 180 PGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 239
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
LG+F++A VTG GP +NL HL+DP NN+LT +
Sbjct: 240 LGYFVRALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 102/177 (57%), Gaps = 12/177 (6%)
Query: 76 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 135
PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G W
Sbjct: 2 APGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-------WV 53
Query: 136 KTGALL-LDGNTLNYFGKNIPINLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPF 193
K L G Y G +P + ++A E + + E+ R D E K +PGG F
Sbjct: 54 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAF 112
Query: 194 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPF 249
DPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+
Sbjct: 113 DPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 169
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 42/284 (14%)
Query: 1 MSAVLLGLQLQVHQTLLLSSPLLSSPRR--KPPLLPSLSPSPSPPLTKSSPSGPDRR-IF 57
++A+ Q H L++S ++ P L P+ + + P K + +R +
Sbjct: 4 LAAIARSFHFQQHS--LINSNVIGKPSTAGHHWLRPAAAGTGVTPRCKQICAAAQQRPTW 61
Query: 58 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 117
LP GL + P YL G +PGD+G+DP GL + P+ Y EL+H+R+AMLG G ++
Sbjct: 62 LP-GL----DPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILV 116
Query: 118 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI 177
+ G N P +WF+ GA+ K N V+ +++L+G AE R
Sbjct: 117 TDLLRVAGVNSIP--IWFEAGAV-----------KYEFANTGTLVVVQLLLMGYAETRRY 163
Query: 178 TNGLD------------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRL 218
+ + LE L +PGGP +PLGLAKD K+KEIKNGRL
Sbjct: 164 MDFVSPGSQAKEGSFFGLEASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRL 223
Query: 219 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAE 262
AM A+LG F+QA VT GP++NL +HLS+P+ ++ +++ ++
Sbjct: 224 AMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQILASSSS 267
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 118/225 (52%), Gaps = 31/225 (13%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 111
PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+HARWAML
Sbjct: 58 PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPETLKWFAQAELMHARWAMLA 112
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 171
AG ++PE F G W+ D + YF P L+ A +A + V G
Sbjct: 113 VAGILLPEWFESLG--LIQNFSWY-------DAGSREYFAD--PTTLLVAQLALMGWVEG 161
Query: 172 AEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNG 216
+ + N +D++ KL +PGG FDP+ + P+ +L+ KEIKNG
Sbjct: 162 RRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNG 221
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 261
RLAM A +G + QA TG+GP+ENLA H++DP N+ + S +
Sbjct: 222 RLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGS 266
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 122/253 (48%), Gaps = 60/253 (23%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP------------------- 91
G +R ++ P ++ P+YL G + GDYG+DP GL K P
Sbjct: 61 GANRPLWFPG-----AKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMP 115
Query: 92 --------DDFS-----------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+D S +++ ELIH RWAML G I E F
Sbjct: 116 GELLGERVEDLSTIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTG--- 172
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 186
W G + LD +YFG ++P + V E++++G E+ R T LD E +
Sbjct: 173 -----VTWQDAGKVELDQGP-SYFGFSLPFTITALVWIEVLVIGFIEFQRNTE-LDPEKR 225
Query: 187 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 245
L+PGG FDPLGLA DP++ +LK+ EIK+ RLAM A GF +QA TG+GP++N HL
Sbjct: 226 LYPGGSYFDPLGLAADPERKEVLKLAEIKHARLAMVAAFGFAVQAAATGKGPLDNWVTHL 285
Query: 246 SDPFANNLLTVIS 258
SDP ++ S
Sbjct: 286 SDPLHTTIIDTFS 298
>gi|449479523|ref|XP_004155624.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 153
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 92/135 (68%), Gaps = 10/135 (7%)
Query: 123 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 179
KFG EAVWFK G+ + L+Y G + + A+ A ++VL+G E YRI
Sbjct: 12 KFG-----EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 66
Query: 180 G--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237
G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP
Sbjct: 67 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 126
Query: 238 VENLAKHLSDPFANN 252
+ENLA HL+DP NN
Sbjct: 127 LENLADHLADPVNNN 141
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 129/258 (50%), Gaps = 61/258 (23%)
Query: 46 KSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------- 92
KS + PDR ++ P ++ PEYL G + GDYG+DPFGL + +
Sbjct: 41 KSIKTIPDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNL 95
Query: 93 ------------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFN 122
+++ ELIH RWAML G + E
Sbjct: 96 AKNLAGDIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLT 155
Query: 123 KFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL 181
W G + L++G++ Y G+ +P ++ ++ E++++G E+ R L
Sbjct: 156 G--------VTWQDAGKVELVEGSS--YLGQPLPFSITTLILIEVLVIGYIEFQRNAE-L 204
Query: 182 DLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
D E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA+VTG+GP+ N
Sbjct: 205 DPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLNN 264
Query: 241 LAKHLSDPFANNLLTVIS 258
A HLSDP ++ +S
Sbjct: 265 WATHLSDPLHTTIIDTLS 282
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 129/258 (50%), Gaps = 61/258 (23%)
Query: 46 KSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------- 92
KS + PDR ++ P ++ PEYL G + GDYG+DPFGL + +
Sbjct: 41 KSIKTIPDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNL 95
Query: 93 ------------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFN 122
+++ ELIH RWAML G + E
Sbjct: 96 AKNLAGDIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLT 155
Query: 123 KFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL 181
W G + L++G++ Y G+ +P ++ ++ E++++G E+ R L
Sbjct: 156 G--------VTWQDAGKVELVEGSS--YLGQPLPFSITTLILIEVLVIGYIEFQRNAE-L 204
Query: 182 DLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
D E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA+VTG+GP+ N
Sbjct: 205 DPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLNN 264
Query: 241 LAKHLSDPFANNLLTVIS 258
A HLSDP ++ +S
Sbjct: 265 WATHLSDPLHTTIIDTLS 282
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 140/272 (51%), Gaps = 41/272 (15%)
Query: 9 QLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEI 68
QL + L+ P S R+ S + P+ + DR+++ D+S
Sbjct: 26 QLLLGGKALVLPPYFSQSSRRTSFTVRSQASSNKPVKQG-----DRQLWFAS---DQSL- 76
Query: 69 PEYLTGEVPGDYGYDPFGLS--KKPDDFSK--YQAY-ELIHARWAMLGAAGFIIPEAFNK 123
YL G +PGDYG+DP GL + P F + + Y E+I+ R+AMLGA G I PE K
Sbjct: 77 -SYLDGSLPGDYGFDPLGLMDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIAPEILGK 135
Query: 124 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
G A+ WF+TG + G T NY+ P L + E+ L+G AE+ R+ +
Sbjct: 136 LGLIPQETALPWFQTGVIPPAG-TYNYWAD--PFTLF---VLEMALMGFAEHRRLQDYRN 189
Query: 181 ---------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L LE L +PGGP F+PLG KD LK+KE+KNGRLAM A+
Sbjct: 190 PGSMGKQYFLGLEKFLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAI 249
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
LG+F+Q VTG GP +NL HL+DP NN LT
Sbjct: 250 LGYFIQGLVTGVGPFQNLLDHLADPVHNNFLT 281
>gi|302784975|ref|XP_002974259.1| light-harvesting complex [Selaginella moellendorffii]
gi|300157857|gb|EFJ24481.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 116/238 (48%), Gaps = 55/238 (23%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKP---------------------------DDFS--- 95
++ P+YL G + GDYG+DP GL K P +D S
Sbjct: 71 AKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDLSTIR 130
Query: 96 --------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 141
+++ ELIH RWAML G I E F W G +
Sbjct: 131 ATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTG--------VTWQDAGKVE 182
Query: 142 LDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAK 200
LD +YFG ++P + V E++++G E+ R T LD E +L+PGG FDPLGLA
Sbjct: 183 LDQGP-SYFGFSLPFTITALVWIEVLVIGFIEFQRNTE-LDPEKRLYPGGSYFDPLGLAA 240
Query: 201 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
DP++ +LK+ EIK+ RLAM A GF +QA TG+GP++N HLSDP ++ S
Sbjct: 241 DPERKEVLKLAEIKHARLAMVAAFGFAVQAAATGKGPLDNWVTHLSDPLHTTIIDTFS 298
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 139/262 (53%), Gaps = 47/262 (17%)
Query: 23 LSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 82
SS R+ ++ + S +PP+ + G DR+++ + YL G +PGD+G+
Sbjct: 31 FSSSRKASFVVKAAS---TPPVKQ----GADRQLWFAS-----KQSLSYLDGSLPGDFGF 78
Query: 83 DPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV--W 134
DP GLS P+ K+ AY E+I+ R+AMLG AG I PE K G PE W
Sbjct: 79 DPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGL-IPPETALPW 136
Query: 135 FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDL 183
F+TG + G T +Y+ P L + E+ L+G AE+ R + L
Sbjct: 137 FQTGVIPPAG-TYSYWAD--PYTLF---VLEMALMGFAEHRRFQDWAKPGSMGKQYFLGF 190
Query: 184 E-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
E D +PGGP F+PLG KD LK+KE+KNGRLAM A+LGFF+Q VTG
Sbjct: 191 EKFLGGSGDPAYPGGPIFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGFFIQGLVTGV 250
Query: 236 GPVENLAKHLSDPFANNLLTVI 257
GP +NL HL+DP NN+LT +
Sbjct: 251 GPFQNLLDHLADPVNNNVLTSL 272
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 110/221 (49%), Gaps = 37/221 (16%)
Query: 46 KSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 105
++ + PDR I+ P S PE+L G +PGD+G+DP GLS PD EL+H
Sbjct: 44 RAVAADPDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHC 98
Query: 106 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 165
RWAMLGAAG IPE K G P W+ G YF + +V E
Sbjct: 99 RWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVV-----E 144
Query: 166 IVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFAL 207
++L+G AE R N L D +PGG FDPLG P +
Sbjct: 145 LILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKE 204
Query: 208 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 205 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 139/262 (53%), Gaps = 47/262 (17%)
Query: 23 LSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 82
SS R+ ++ + S +PP+ + G DR+++ + YL G +PGD+G+
Sbjct: 31 FSSSRKASFVVKAAS---TPPVKQ----GADRQLWFAS-----KQSLSYLDGSLPGDFGF 78
Query: 83 DPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV--W 134
DP GLS P+ K+ AY E+I+ R+AMLG AG I PE K G PE W
Sbjct: 79 DPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGL-IPPETALPW 136
Query: 135 FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDL 183
F+TG + G T +Y+ P L + E+ L+G AE+ R + L
Sbjct: 137 FQTGVIPPAG-TYSYWAD--PYTLF---VLEMALMGFAEHRRFQDWAKPGSMGKQYFLGF 190
Query: 184 E-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
E D +PGGP F+PLG KD LK+KE+KNGRLAM A+LGFF+Q VTG
Sbjct: 191 EKFLGGSGDPAYPGGPIFNPLGFGKDERSMKELKLKEVKNGRLAMLAILGFFIQGLVTGV 250
Query: 236 GPVENLAKHLSDPFANNLLTVI 257
GP +NL HL+DP NN+LT +
Sbjct: 251 GPFQNLLDHLADPVNNNVLTSL 272
>gi|544700|gb|AAB29485.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 221
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 107/193 (55%), Gaps = 14/193 (7%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G P P GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 31 PAHLAGSSPRGLRVRPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 85
Query: 129 GPEAVWFKT--GALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLED 185
W K A L DG Y G +P NL + E + + AE R T D E
Sbjct: 86 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEK 140
Query: 186 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKH 244
K +PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENLA H
Sbjct: 141 KKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATH 200
Query: 245 LSDPFANNLLTVI 257
L+DP+ NN+ ++
Sbjct: 201 LADPWHNNIGDIV 213
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 110/210 (52%), Gaps = 34/210 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G + GD+G+DP GL + P D Y EL+H+R+AM G AG + + G
Sbjct: 12 PAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILFTDLLRASGRTD 71
Query: 129 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD----- 182
P VWF+ GA D +T F + +++L+G E R + +
Sbjct: 72 IP--VWFEAGATKFDFADTTTLF------------VVQLILMGFVETKRWMDIVKPGSQA 117
Query: 183 LEDKL-------------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
ED +PGGP F+PLG A DP + L+ KEIKNGRLAM AM+GF +
Sbjct: 118 AEDSFFGFEAAFEGLETGYPGGPLFNPLGFANDPTKPQPLRWKEIKNGRLAMVAMVGFMV 177
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
QAYVT GP+ENL HLSDP N ++ I+
Sbjct: 178 QAYVTKTGPIENLLTHLSDPVHNTIIQRIA 207
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 125/265 (47%), Gaps = 43/265 (16%)
Query: 2 SAVLLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEG 61
S+ + G + + LS L+ + P++ S S +T + + PDR ++ P
Sbjct: 19 SSQINGSTVGATKASFLSGKRLTVRKHTSPVVASRS------VTVCAVADPDRPLWFPG- 71
Query: 62 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 121
S P +L G +PGD+G+DP GL P+ EL+H RWAMLGAAG IPE
Sbjct: 72 ----STPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFL 127
Query: 122 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI---- 177
K G P W+ G L +T F I E++ +G AE R
Sbjct: 128 TKIGILNTPS--WYDAGKLEYFTDTTTLF------------IIELIFIGWAEGRRWADIL 173
Query: 178 ------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAM 223
N L D +PGG FDPLG P++ L+ KEIKNGRLAM A+
Sbjct: 174 KPGCVNTDPIFPNNRLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAV 233
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDP 248
+G + Q TG GP++NL HL+DP
Sbjct: 234 MGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 119/214 (55%), Gaps = 33/214 (15%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 123
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGA G I PE K
Sbjct: 66 SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGK 124
Query: 124 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
G A+ WF+TG + G T NY+ N + + E+ L+G AE+ R +
Sbjct: 125 VGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAK 178
Query: 181 ---------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L LE +PGGPF +PLG KD LK+KE+KNGRLAM A+
Sbjct: 179 PGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 238
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
LG+F+Q VTG GP +NL H++DP NN+LT +
Sbjct: 239 LGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSL 272
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 141/269 (52%), Gaps = 42/269 (15%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLT 73
+ + S P+ S+ ++K + + + +PP+ + G +R ++ S+ YL
Sbjct: 19 RQIFGSKPVASASQKKSSFV--VKAAATPPVKQ----GANRPLWFAS-----SQSLSYLD 67
Query: 74 GEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGAN 127
G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 68 GSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLI 126
Query: 128 CGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------- 180
A+ ++ T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 127 PAETALPXXQTGVIPPAGTYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPGSMG 181
Query: 181 ----LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F+
Sbjct: 182 KQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI 241
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVI 257
Q VTG GP +NL HL+DP NN+LT +
Sbjct: 242 QGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 110/221 (49%), Gaps = 37/221 (16%)
Query: 46 KSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 105
++ + PDR I+ P S PE+L G +PGD+G+DP GLS PD E++H
Sbjct: 44 RAVAADPDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHC 98
Query: 106 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 165
RWAMLGAAG IPE K G P W+ G YF + +V E
Sbjct: 99 RWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVV-----E 144
Query: 166 IVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFAL 207
++L+G AE R N L D +PGG FDPLG P +
Sbjct: 145 LILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKE 204
Query: 208 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 205 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 110/221 (49%), Gaps = 37/221 (16%)
Query: 46 KSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 105
++ + PDR I+ P S PE+L G +PGD+G+DP GLS PD E++H
Sbjct: 44 RAVAADPDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHC 98
Query: 106 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 165
RWAMLGAAG IPE K G P W+ G YF + +V E
Sbjct: 99 RWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVV-----E 144
Query: 166 IVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFAL 207
++L+G AE R N L D +PGG FDPLG P +
Sbjct: 145 LILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKE 204
Query: 208 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 205 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 107/215 (49%), Gaps = 37/215 (17%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 111
PDR ++ P S P +L G +PGD+G+DP GL+ P+ Q EL+H RWAMLG
Sbjct: 64 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLG 118
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 171
AAG IPE K G P W+ G L +T F I E++ +G
Sbjct: 119 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------IVELIFIGW 164
Query: 172 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 213
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 165 AEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 224
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 225 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 259
>gi|388504276|gb|AFK40204.1| unknown [Lotus japonicus]
Length = 202
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 115/205 (56%), Gaps = 22/205 (10%)
Query: 14 QTLLLSSPLLSSPRRKPPLLPSL----------SPSPSPPLTKSSPS-GPDRRIFLPEGL 62
T+ +SSP L+ K L PS+ + + S P++ SP GPDR +L
Sbjct: 4 STMAVSSPSLAGQAIK--LAPSVQDTGRITMRKTTTKSKPVSSGSPWYGPDRVKYLGP-- 59
Query: 63 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 122
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 60 -FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLA 118
Query: 123 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 179
+ G G EAVWFK G+ + L+Y G + + A+ A +++L+G E YRI
Sbjct: 119 RNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG 177
Query: 180 G--LDLEDKLHPGGPFDPLGLAKDP 202
G ++ D L+PGG FDPLGLA DP
Sbjct: 178 GPLGEVTDPLYPGGSFDPLGLADDP 202
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 113/228 (49%), Gaps = 37/228 (16%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P PDR ++ P S PE+L G +PGD+G+DP GL PD + ELIH+R
Sbjct: 58 CEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSR 112
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAML G IIPE + G F D + YF + + +A++
Sbjct: 113 WAMLAVTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTL-----FVAQM 158
Query: 167 VLVGGAEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALL 208
VL+G AE R + +D+E K +PGG FD + + P+ +L
Sbjct: 159 VLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVL 218
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 256
+ KEIKNGRLAM A LGF QA T + P+ENL HL+DP N+ +V
Sbjct: 219 RTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSV 266
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 134/247 (54%), Gaps = 44/247 (17%)
Query: 39 SPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS--- 95
S +PP+ + G DR+++ + YL G +PGD+G+DP GLS P+
Sbjct: 42 SSTPPVKQ----GADRQLWFAS-----KQSLTYLDGSLPGDFGFDPLGLSD-PEGTGGFI 91
Query: 96 --KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV--WFKTGALLLDGNTLNYF 150
K+ AY E+I+ R+AMLGAAG I PE K G PE WF+TG + G T +Y+
Sbjct: 92 EPKWLAYGEIINGRFAMLGAAGAIAPEILGKAGL-IPPETALPWFQTGVIPPAG-TYDYW 149
Query: 151 GKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGP 192
P L + E+ L+G AE+ R + L LE D +PGGP
Sbjct: 150 AD--PYTLF---VFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGP 204
Query: 193 -FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 251
F+PLG KD LK+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL+DP N
Sbjct: 205 LFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNN 264
Query: 252 NLLTVIS 258
N+LT +
Sbjct: 265 NVLTSLK 271
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/274 (37%), Positives = 141/274 (51%), Gaps = 46/274 (16%)
Query: 11 QVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPE 70
+ + +L SS RK ++ +PP + G DR+++ +
Sbjct: 17 EAARQILGGRSFQSSSSRKVSF--AVRAEATPPAKQ----GADRQLWFAS-----KQSLS 65
Query: 71 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 124
YL G +PGDYG+DP GLS P+ + AY E+I+ R+AMLGA G I PE K
Sbjct: 66 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPSWLAYGEIINGRYAMLGAVGAIAPEILGKA 124
Query: 125 GANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
G PE WFKTG + G T +Y+ P L + E+ L+G AE+ R +
Sbjct: 125 GL-IPPETALPWFKTGVIPPAG-TYDYWAD--PYTLF---VFELALMGFAEHRRFQDFQK 177
Query: 181 ---------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L E + ++PGGP F+PLG KD LK+KE+KNGRLAM A+
Sbjct: 178 PGCLSKQYFLGFEKYFEGSGNPIYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAI 237
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
LG+F+QA VTG GP +NL HLSDP NN+LT +
Sbjct: 238 LGYFVQALVTGVGPYQNLLDHLSDPVNNNILTSL 271
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T P PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+H
Sbjct: 83 TVCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMH 137
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
+RWAML AG +IPE G F D YF P L I
Sbjct: 138 SRWAMLAVAGILIPEWLESLG---------FIENYNWFDAGAREYFAD--PTTL---FIV 183
Query: 165 EIVLVGGAEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFA 206
++VL+G E R + +D+E L +PGG FDPL + P+
Sbjct: 184 QLVLMGWVEGRRWADMIKPGCVDIEPTLPNKTKPKPDVGYPGGLWFDPLMWGRGSPEPVM 243
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+L+ KEIKNGRLAM A +GF QA TGEGP+ENL H++DP N+ + +
Sbjct: 244 VLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHIADPGHCNIFSAFTSQ 297
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 107/217 (49%), Gaps = 37/217 (17%)
Query: 50 SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
+ PDR I+ P S P +L G +PGD+G+DP GL P+ EL+H RWAM
Sbjct: 54 AAPDRPIWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAM 108
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 169
LGAAG IPE K G P W+ G +T F I E++L+
Sbjct: 109 LGAAGIFIPEFLTKIGILNTPS--WYTAGEQQYFTDTTTLF------------IIELILI 154
Query: 170 GGAEYYRIT----------------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVK 211
G AE R N L D +PGG FDPLG P++ L+ K
Sbjct: 155 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTK 214
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
EIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 215 EIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 251
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 128/261 (49%), Gaps = 62/261 (23%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------ 92
++SSPS DR ++ P ++ PE+L G + GDYG+DPFGL K +
Sbjct: 104 SRSSPS-TDRPLWFPG-----AKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQN 157
Query: 93 -------------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAF 121
+++ ELIH RWAML G + E
Sbjct: 158 LAKNLAGDVIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL 217
Query: 122 NKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 180
W G + L++G+T Y G+ +P ++ + E++++G E+ R
Sbjct: 218 TG--------VTWQDAGKVELVEGST--YLGQPLPFSITTLIWIEVLVIGYIEFQRNAE- 266
Query: 181 LDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+
Sbjct: 267 LDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 326
Query: 240 NLAKHLSDPFANNLLTVISGN 260
N A HLSDP ++ S +
Sbjct: 327 NWATHLSDPLHTTIIDTFSSS 347
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 128/261 (49%), Gaps = 62/261 (23%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------ 92
++SSPS DR ++ P ++ PE+L G + GDYG+DPFGL K +
Sbjct: 46 SRSSPS-TDRPLWFPG-----AKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQN 99
Query: 93 -------------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAF 121
+++ ELIH RWAML G + E
Sbjct: 100 LAKNLAGDVIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL 159
Query: 122 NKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 180
W G + L++G+T Y G+ +P ++ + E++++G E+ R
Sbjct: 160 TG--------VTWQDAGKVELVEGST--YLGQPLPFSITTLIWIEVLVIGYIEFQRNAE- 208
Query: 181 LDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+
Sbjct: 209 LDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 268
Query: 240 NLAKHLSDPFANNLLTVISGN 260
N A HLSDP ++ S +
Sbjct: 269 NWATHLSDPLHTTIIDTFSSS 289
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 108/225 (48%), Gaps = 37/225 (16%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 111
PDR ++ P S PE+L G +PGD+G+DP GL P+ EL+H+RWAMLG
Sbjct: 63 PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLG 117
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 171
AAG IPE K G P W+ G +T F + E+VL+G
Sbjct: 118 AAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF------------VIELVLIGW 163
Query: 172 AEYYRIT----------------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 213
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 164 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 223
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
KNGRLAM A++G + Q TG GP++NL HL+DP + S
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 118/232 (50%), Gaps = 37/232 (15%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P GPDR ++ P S P +L G +PGD+G+DP GL P+ + EL+H+R
Sbjct: 52 CEPLGPDRPLWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSR 106
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAML AAG ++PE K+G F +D +YF P L ++++
Sbjct: 107 WAMLAAAGILVPEVLEKWG---------FMEDYSWIDAGARDYFAD--PWTL---FVSQM 152
Query: 167 VLVGGAEYYRITNGLD----------------LEDKLHPGG-PFDPLGLAK-DPDQFALL 208
L+G AE R + L+ + D +PGG FD + P+ +L
Sbjct: 153 ALMGWAEGRRWADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVL 212
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+ KEIKNGRLAM A +GF+ QA TGEGP++NL HL+DP N+ + + +
Sbjct: 213 RTKEIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTSH 264
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 111/225 (49%), Gaps = 37/225 (16%)
Query: 42 PPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 101
P + + P+R I+ P S P +L G +PGD+G+DP+GL P+ E
Sbjct: 43 PSFAVRAAADPNRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAE 97
Query: 102 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 161
L+H RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 98 LVHCRWAMLGAAGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLF----------- 144
Query: 162 VIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPD 203
I E++L+G AE R +N L D +PGG FDPLG P+
Sbjct: 145 -IIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPE 203
Query: 204 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
+ L+ KEIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 204 KIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 248
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 112/209 (53%), Gaps = 33/209 (15%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G++ GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE--------------- 173
P VW++ GA+ D + ++ + +L+G AE
Sbjct: 116 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKRYVDYVSPGSQAK 162
Query: 174 ----YYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
++ I L+ + +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+
Sbjct: 163 EGSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMMAMLGFFV 222
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVI 257
QA VT GP++NL +HLS+P+ ++ +
Sbjct: 223 QASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 111/229 (48%), Gaps = 37/229 (16%)
Query: 50 SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
+ P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAM
Sbjct: 49 AAPERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAM 103
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 169
LGAAG IPE K G P W+ G +T F I E++L+
Sbjct: 104 LGAAGIFIPELLTKIGILNTPS--WYTAGEQTYFADTTTLF------------IVELILI 149
Query: 170 GGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVK 211
G AE R N L D +PGG FDPLG P++ L+ K
Sbjct: 150 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKELRTK 209
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
EIKNGRLAM A++G + QA TG GP++NL HL+DP + + N
Sbjct: 210 EIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFRAFTPN 258
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 114/232 (49%), Gaps = 37/232 (15%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P PDR ++ P S PE+L G +PGD+G+DP GL PD + ELIH+R
Sbjct: 58 CEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSR 112
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAML G IIPE + G F D + YF + + +A++
Sbjct: 113 WAMLAVTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTL-----FVAQM 158
Query: 167 VLVGGAEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALL 208
VL+G AE R + +D+E K +PGG FD + + P+ +L
Sbjct: 159 VLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVL 218
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+ KEIKNGRLAM A LGF QA T + P+ENL HL+DP N+ + + +
Sbjct: 219 RTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 114/232 (49%), Gaps = 37/232 (15%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P PDR ++ P S PE+L G +PGD+G+DP GL PD + ELIH+R
Sbjct: 58 CEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSR 112
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAML G IIPE + G F D + YF + + +A++
Sbjct: 113 WAMLAVTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTL-----FVAQM 158
Query: 167 VLVGGAEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALL 208
VL+G AE R + +D+E K +PGG FD + + P+ +L
Sbjct: 159 VLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVL 218
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+ KEIKNGRLAM A LGF QA T + P+ENL HL+DP N+ + + +
Sbjct: 219 RTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 101/192 (52%), Gaps = 14/192 (7%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
+E P +L G++P DYG+DP L +KPD+ ++Y+ EL+HARWAM+G AG + G
Sbjct: 38 AEAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELMHARWAMMGVAGAV--------G 89
Query: 126 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 185
+ W D T Y G L + VLV AE R E
Sbjct: 90 VEIAGQGDWASAQPTTWDA-TAKYLGNETHAPLFAVIGVNGVLVAFAESQR--QAATGEA 146
Query: 186 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV--TGEGPVENLAK 243
+L+PGG FDP GL+K D F LK KE+ NGR+AM A G Q +G GPV+ LA
Sbjct: 147 RLYPGGSFDPAGLSKGKD-FETLKRKELANGRVAMMAFFGIMAQHQADPSGPGPVKQLAN 205
Query: 244 HLSDPFANNLLT 255
HL+DP+ N+ T
Sbjct: 206 HLADPWHVNVCT 217
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 111/209 (53%), Gaps = 33/209 (15%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 182
P VW++ GA+ D + ++ + +L+G AE R + +
Sbjct: 116 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKRYMDFVSPGSQAK 162
Query: 183 -------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
LE L +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+
Sbjct: 163 EGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFV 222
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVI 257
QA VT GP++NL +HLS+P+ ++ +
Sbjct: 223 QASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 126/234 (53%), Gaps = 40/234 (17%)
Query: 46 KSSPSGPDRR-IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
++ SG D R I+LP GL P++L G + GD+G+DP L K P+ Y EL+H
Sbjct: 34 RAQSSGSDERPIWLP-GL----SPPQHLDGSLAGDFGFDPLELGKDPETLRWYVQAELVH 88
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVI 163
+R+AM G AG ++ + G P VW++ GA + +T F +
Sbjct: 89 SRFAMAGIAGILVTDLLRTVGGRDLP--VWYEAGATEFEFADTRTLF------------V 134
Query: 164 AEIVLVGGAEYYR----ITNG--------LDLEDKL------HPGGPF-DPLGLAKDPDQ 204
+++L+G AE R I+ G L ED L +PGGPF DP GL +D +
Sbjct: 135 VQLILMGYAETRRYYDYISPGSQAAQDTFLGFEDALAGLQSGYPGGPFFDPAGLGRDINN 194
Query: 205 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
LK KE+KNGRLAM A+LG F+QA+ T GP++NL H+SDP+ N ++ +S
Sbjct: 195 ARTLKEKELKNGRLAMVAILGVFVQAFFTKTGPIDNLLTHVSDPWHNTIVQTLS 248
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 111/209 (53%), Gaps = 33/209 (15%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 48 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 107
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 182
P VW++ GA+ D + ++ + +L+G AE R + +
Sbjct: 108 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKRYMDFVSPGSQAK 154
Query: 183 -------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
LE L +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+
Sbjct: 155 EGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFV 214
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVI 257
QA VT GP++NL +HLS+P+ ++ +
Sbjct: 215 QASVTHTGPIDNLVEHLSNPWHKTIIQTL 243
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 120/234 (51%), Gaps = 36/234 (15%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T P GPDR I+ P S P +L G +PGD+G+DP GL +P+ + EL+H
Sbjct: 56 TVCEPLGPDRPIWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMH 110
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
RWAML AAG ++P+ ++G + G D + YF P L ++
Sbjct: 111 GRWAMLAAAGILVPDLLARWG--------FIDAGFSWFDAGSREYFAD--PWTL---FVS 157
Query: 165 EIVLVGGAEYYRITNGL-----DLEDKL-----------HPGG-PFDPLGLAK-DPDQFA 206
++ L+G AE R + L D+E + +PGG FD + P+
Sbjct: 158 QMALMGWAEGRRWADYLRPGCVDIEPRFPNRRNPVPDVGYPGGLWFDWANWGRGSPEPVM 217
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+L+ KEIKNGRLAM A +GF+ QA TG+GP++NL HL+DP N+ + + +
Sbjct: 218 VLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTSH 271
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 119/211 (56%), Gaps = 31/211 (14%)
Query: 70 EYLTGEVPGDYGYDPFGLS--KKPDDFSK--YQAY-ELIHARWAMLGAAGFIIPEAFNKF 124
YL G +PGDYG+DP GL + P F + + AY E+I+ R+AMLGA G I PE K
Sbjct: 79 SYLDGSLPGDYGFDPLGLMDPEGPGGFIEPGWLAYGEIINGRYAMLGAVGAIAPEILGKL 138
Query: 125 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 180
G A+ WF+TG + G T +Y+ P L + E+ L+G AE+ R+ +
Sbjct: 139 GLIPQETALPWFRTGVIPPAG-TYDYWAD--PFTLF---VLEMALMGFAEHRRLQDYRYP 192
Query: 181 --------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L E L +PGGP F+PLG KD LK+KE+KNGRLAM A++
Sbjct: 193 GSMSKQYFLGFEKYLGGSGNPSYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAIV 252
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
G+F+Q VTG GP +NL HL+DP NNLLT
Sbjct: 253 GYFIQGLVTGVGPFQNLLDHLADPVNNNLLT 283
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 120/234 (51%), Gaps = 36/234 (15%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T P GPDR I+ P S P +L G +PGD+G+DP GL +P+ + EL+H
Sbjct: 56 TVCEPLGPDRPIWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMH 110
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
RWAML AAG ++P+ ++G + G D + YF P L ++
Sbjct: 111 GRWAMLAAAGILVPDLLARWG--------FIDAGFSWFDAGSREYFAD--PWTL---FVS 157
Query: 165 EIVLVGGAEYYRITNGL-----DLEDKL-----------HPGG-PFDPLGLAK-DPDQFA 206
++ L+G AE R + L D+E + +PGG FD + P+
Sbjct: 158 QMALMGWAEGRRWADYLRPGCVDIEPRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVM 217
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+L+ KEIKNGRLAM A +GF+ QA TG+GP++NL HL+DP N+ + + +
Sbjct: 218 VLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTSH 271
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 107/215 (49%), Gaps = 37/215 (17%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 111
P+R ++ P S P +L G +PGD+G+DP GL P+ E++H RWAMLG
Sbjct: 64 PNRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLG 118
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 171
AAG IPE K G P W+ G L YF + +V E++ +G
Sbjct: 119 AAGIFIPEFLTKIGILNTPS--WYTAG-------ELEYFTDKTTLFIV-----EMIFIGW 164
Query: 172 AEYYRIT----------------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 213
AE R N L D +PGG FDPLG PD+ L+ KEI
Sbjct: 165 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEI 224
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
KNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 225 KNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADP 259
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 111/230 (48%), Gaps = 37/230 (16%)
Query: 37 SPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 96
+P+ + +T + PDR ++ P S P +L G +PGD+G+DP GL P+
Sbjct: 50 APTAARSVTVCVAADPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLRW 104
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
EL+H RWAMLGAAG IPE K G P W+ G L +T F
Sbjct: 105 NVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------ 156
Query: 157 NLVFAVIAEIVLVGGAEYYRIT----------------NGLDLEDKLHPGG-PFDPLGLA 199
I E+ +G AE R N L D +PGG FDPLG
Sbjct: 157 ------IVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 210
Query: 200 K-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
P++ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 211 SGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 260
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 116/222 (52%), Gaps = 39/222 (17%)
Query: 54 RRIFLPEGLLDRSEIPEYLTG----EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
R+ +LP SEIP++L + G++G+DP GL K + YQ EL+HAR AM
Sbjct: 27 RQSWLPG-----SEIPKHLDSPAALAMAGNFGFDPLGLGKDAEALRWYQQAELVHARTAM 81
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 169
AG +IP K GA PE W+ G + ++ + P + AV ++ L
Sbjct: 82 TAVAGILIPGLLTKAGALNVPE--WYDAGKVAIESSF-------APFGALLAV--QLFLT 130
Query: 170 GGAEYYRITN----GLDLE---------------DKLHPGGPFDPLGLAKDPDQFALLKV 210
G E R + G E D +PGG FDPLGL+KD D+ A K+
Sbjct: 131 GFVEAKRWQDFKKPGSQAEKGSFLGFETAFAGTGDNGYPGGIFDPLGLSKDADKLADWKL 190
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAM A LGF Q + TG+GP++NLA HL+DP+ N
Sbjct: 191 KEIKNGRLAMVAFLGFTAQKFATGKGPIDNLAAHLADPWHVN 232
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 102/180 (56%), Gaps = 19/180 (10%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L + P YLTGE PGDYG+D GLS P+ F++Y+ E+IHARWAML
Sbjct: 34 GPDRAKWLGP---FSDDTPSYLTGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAML 90
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIV 167
GA G I PE A E VWFK GA + L+Y G ++ ++ + +++
Sbjct: 91 GALGCITPELIGGDIA----EPVWFKAGAQIFSEGGLDYLGNPSLVHAQSIIATLAVQVI 146
Query: 168 LVGGAEYYRITN-------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAM 220
L+G AE +R G DL D L+PG FDPL PD FA LKVKEIKNGRLA
Sbjct: 147 LMGQAEAFRAAGYVVPGGFGEDL-DNLYPGDAFDPLAWLI-PDTFAELKVKEIKNGRLAC 204
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 113/227 (49%), Gaps = 31/227 (13%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+H+R
Sbjct: 49 CEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSR 103
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAML G ++PE + G + D T YF P L + +
Sbjct: 104 WAMLAVFGILVPELLERIG---------YIENFSWYDAGTREYFVD--PTTLFVVQMGLM 152
Query: 167 VLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVK 211
V G + I N +D+E K+ +PGG FDP+ + P+ +L+ K
Sbjct: 153 GWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTK 212
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
EIKNGRLAM A +GF+ QA TGEGP+ENL HL+DP N+ + +
Sbjct: 213 EIKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 110/209 (52%), Gaps = 33/209 (15%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 182
P VW++ GA+ D ++ + +L+G AE R + +
Sbjct: 116 LP--VWYEAGAVKFDFACTKTL-----------IVVQFLLMGFAETKRYMDFVSPGSQAK 162
Query: 183 -------LEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
LE L +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+
Sbjct: 163 EGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFV 222
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVI 257
QA VT GP++NL +HLS+P+ ++ +
Sbjct: 223 QASVTHTGPIDNLVEHLSNPWHKTIIQTL 251
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 119/232 (51%), Gaps = 37/232 (15%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P GPDR ++ P + P +L G +PGD+G+DP GL +P+ + EL+H+R
Sbjct: 60 CEPLGPDRPVWFPG-----TSPPPWLDGSLPGDFGFDPLGLGSEPETLRWFAQAELMHSR 114
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAML AG +IPE K+G E W+ G YF P L IA++
Sbjct: 115 WAMLAVAGILIPEILQKWGFM--EEFSWYTAG-------EREYFAD--PWTL---FIAQM 160
Query: 167 VLVGGAEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALL 208
L+G AE R + +D+E + +PGG FD + P+ +L
Sbjct: 161 ALMGWAEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVL 220
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+ KEIKNGRLAM A +GF+ QA TG+GPV+NL HL+DP N+ + + +
Sbjct: 221 RTKEIKNGRLAMLAFVGFWFQAVYTGQGPVDNLLAHLADPGHCNIFSAFTSH 272
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 111/209 (53%), Gaps = 33/209 (15%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE--------------- 173
P VW++ GA+ D + ++ + +L+G AE
Sbjct: 116 LP--VWYEAGAVKFDFASTKTL-----------IVVQFLLMGFAETKRYMDFVSPGSQAK 162
Query: 174 ----YYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
++ I L+ + +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+
Sbjct: 163 EGSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDVKNAHDWKLKEIKNGRLAMMAMLGFFV 222
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVI 257
QA VT GP++NL +HLS+P+ ++ +
Sbjct: 223 QASVTHTGPIDNLVEHLSNPWHXTIIQTL 251
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 110/225 (48%), Gaps = 37/225 (16%)
Query: 42 PPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 101
P + + DR I+ P S P +L G +PGD+G+DP+GL P+ E
Sbjct: 53 PSFAVRAAADSDRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAE 107
Query: 102 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 161
L+H RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 108 LVHCRWAMLGAAGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLF----------- 154
Query: 162 VIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPD 203
I E++L+G AE R +N L D +PGG FDPLG P+
Sbjct: 155 -IIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPE 213
Query: 204 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
+ L+ KEIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 214 KIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 258
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 108/217 (49%), Gaps = 37/217 (17%)
Query: 50 SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
+ P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAM
Sbjct: 46 AAPERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAM 100
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 169
LGAAG IPE K G P W+ G +T F I E++L+
Sbjct: 101 LGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELILI 146
Query: 170 GGAEYYRIT----------------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVK 211
G AE R N L D +PGG FDPLG P++ L+ K
Sbjct: 147 GWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGTGSPEKLKELRTK 206
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
EIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 207 EIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 243
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 111/230 (48%), Gaps = 37/230 (16%)
Query: 37 SPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 96
SP+ + +T + PDR ++ P S P +L G +PGD+G+DP GL P+
Sbjct: 47 SPTAARSVTVCVAADPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLRW 101
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
EL+H RWAMLGAAG IPE K G P W+ G + +T F
Sbjct: 102 NVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYSAGEVEYFTDTTTLF------ 153
Query: 157 NLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLA 199
I E+ +G AE R N L D +PGG FDPLG
Sbjct: 154 ------IVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 207
Query: 200 K-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
P++ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 208 SGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 111/230 (48%), Gaps = 37/230 (16%)
Query: 37 SPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 96
SP+ + +T + PDR ++ P S P +L G +PGD+G+DP GL P+
Sbjct: 47 SPTAARSVTVCVAADPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLRW 101
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
EL+H RWAMLGAAG IPE K G P W+ G + +T F
Sbjct: 102 NVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYSAGEVEYFTDTTTLF------ 153
Query: 157 NLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLA 199
I E+ +G AE R N L D +PGG FDPLG
Sbjct: 154 ------IVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 207
Query: 200 K-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
P++ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 208 SGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 106/207 (51%), Gaps = 28/207 (13%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 112
DR ++LP + P +L G +PGDYGYDP GL+ PD + + E + RWAM G
Sbjct: 38 DRTLWLPN-----TVPPAHLNGTLPGDYGYDPIGLATDPDRLAWFVEAERTNGRWAMAGV 92
Query: 113 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 172
AG + +A + A WF GA L PI L E V+ G
Sbjct: 93 AGILFTDALHI------GSAPWFSIGAEL-----------ESPIPLWGLATIEFVIFGFL 135
Query: 173 EYYRITNGLDL-EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 231
E R+ ++ L PFDPLG+ + VKE+KNGRLAMFA GF +QA
Sbjct: 136 EMKRLEGWKKTGQNGLLNWFPFDPLGMNSKE-----MMVKEVKNGRLAMFAWCGFMVQAL 190
Query: 232 VTGEGPVENLAKHLSDPFANNLLTVIS 258
VT EGPV NL KH++DPF NN +T I+
Sbjct: 191 VTREGPVTNLEKHIADPFNNNFITSIA 217
>gi|322812534|pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 114/233 (48%), Gaps = 55/233 (23%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPD--------------------------------- 92
++ PEYL G + GDYG+DPFGL K +
Sbjct: 18 AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKS 77
Query: 93 ----------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-L 141
+++ ELIH RWAML G + E W G + L
Sbjct: 78 TSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGI--------TWQDAGKVEL 129
Query: 142 LDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKD 201
++G++ Y G+ +P ++ + E++++G E+ R LD E +L+PGG FDPLGLA D
Sbjct: 130 IEGSS--YLGQPLPFSMTTLIWIEVLVIGYIEFQRNAE-LDTEKRLYPGGTFDPLGLASD 186
Query: 202 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 254
P++ +L++ EIK+ RLAM LGF +QA VTG+GP+ N HLSDP +L
Sbjct: 187 PEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLHTTIL 239
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 117/214 (54%), Gaps = 26/214 (12%)
Query: 61 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK-----YQAY-ELIHARWAMLGAAG 114
G+ D+S YL G +PGDYG+DP GLS P+ + AY E+IH RWAMLG AG
Sbjct: 69 GVSDQSL--SYLDGTLPGDYGFDPLGLSD-PEGAGGFINPGWLAYAEVIHGRWAMLGVAG 125
Query: 115 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG-AE 173
PE F + VWFK G + G + +++ + V + V + E
Sbjct: 126 ATAPETMKGFIPDS-TAVVWFKNGIIPAQG-SYDFWAPPTALFWVMVCMMNFVEINRLTE 183
Query: 174 Y----YRITNGL-DLEDKL-------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
Y +R L LE + +PGG F+P+G+ K+ +KVKEIKNGRLAM
Sbjct: 184 YANPGFRTKQSLAGLEKGMGGTGNPAYPGGSFNPMGMGKN--DMDAMKVKEIKNGRLAMM 241
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
A G +QA +TGEGPV+NL H++DPFA+NLLT
Sbjct: 242 AFFGIMVQAIITGEGPVKNLTDHVTDPFAHNLLT 275
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 117/232 (50%), Gaps = 37/232 (15%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P GPDR ++ P S P +L G +PGD+G+DP GL P+ + EL+H+R
Sbjct: 52 CEPLGPDRPLWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSR 106
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAML AG ++PE K+G F +D +YF P L ++++
Sbjct: 107 WAMLAVAGILVPEVLEKWG---------FMEDYSWIDAGARDYFAD--PWTL---FVSQM 152
Query: 167 VLVGGAEYYRITNGLD----------------LEDKLHPGG-PFDPLGLAK-DPDQFALL 208
L+G AE R + L+ + D +PGG FD + P+ +L
Sbjct: 153 ALMGWAEGRRWADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVL 212
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+ KEIKNGRLAM A +GF+ QA TGEGP++NL HL+DP N+ + + +
Sbjct: 213 RTKEIKNGRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTSH 264
>gi|115777|sp|P12332.2|CB21_SILPR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169886|gb|AAB42157.1| chlorophyl-a/b-binding protein precursor, partial [Silene latifolia
subsp. alba]
Length = 205
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 100/169 (59%), Gaps = 13/169 (7%)
Query: 46 KSSPS----GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 101
KS+P GPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E
Sbjct: 41 KSAPESIWYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELE 97
Query: 102 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 159
+IH RWAMLGA G + PE K G G EAVWFK G+ + L+Y G + +
Sbjct: 98 VIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLVHAQSI 156
Query: 160 FAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQF 205
A+ A ++VL+G E YR+ G E D+L+PGG FDPLGLA+DP+ F
Sbjct: 157 LAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 109/221 (49%), Gaps = 37/221 (16%)
Query: 46 KSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 105
++ + P+R ++ P S P +L G +PGD+G+DP GL P+ E++H
Sbjct: 59 SAAAADPNRPLWFP-----GSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHC 113
Query: 106 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 165
RWAMLGAAG IPE K G P W+ G L YF + I E
Sbjct: 114 RWAMLGAAGIFIPEFLTKIGILNTPS--WYTAG-------ELEYFTDKTTL-----FIVE 159
Query: 166 IVLVGGAEYYRIT----------------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFAL 207
++ +G AE R N L D +PGG FDPLG PD+
Sbjct: 160 MIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKE 219
Query: 208 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
L+ KEIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 220 LRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADP 260
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 108/217 (49%), Gaps = 37/217 (17%)
Query: 50 SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
+ P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAM
Sbjct: 44 AAPERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAM 98
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 169
LGAAG IPE K G P W+ G +T F + E++L+
Sbjct: 99 LGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------VVELILI 144
Query: 170 GGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVK 211
G AE R N L D +PGG FDPLG P++ L+ K
Sbjct: 145 GWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGNGSPEKLKELRTK 204
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
EIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 205 EIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLADP 241
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 119/234 (50%), Gaps = 36/234 (15%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T P GPDR I+ P S P +L G +PGD+G+DP GL +P+ + EL+H
Sbjct: 17 TVCEPLGPDRPIWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMH 71
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
RWAML AAG ++P+ ++G G D + YF P L ++
Sbjct: 72 GRWAMLAAAGILVPDLLARWGF--------IDAGFSWFDAGSREYFAD--PWTL---FVS 118
Query: 165 EIVLVGGAEYYRITNGL-----DLEDKL-----------HPGG-PFDPLGLAK-DPDQFA 206
++ L+G AE R + L D+E + +PGG FD + P+
Sbjct: 119 QMALMGWAEGRRWADYLRPGCVDIEPRFPNRKNPVPDVGYPGGLWFDWANWGRGSPEPVM 178
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+L+ KEIKNGRLAM A +GF+ QA TG+GP++NL HL+DP N+ + + +
Sbjct: 179 VLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTSH 232
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 111/230 (48%), Gaps = 37/230 (16%)
Query: 37 SPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 96
+P+ + +T + PDR ++ P S P +L G +PGD+G+DP GL P+
Sbjct: 47 APTAARSVTVCVAADPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETLRW 101
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 156
EL+H RWAMLGAAG IPE K G P W+ G L +T F
Sbjct: 102 NVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------ 153
Query: 157 NLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLA 199
I E+ +G AE R N L D +PGG FDPLG
Sbjct: 154 ------IVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 207
Query: 200 K-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
P++ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 208 SGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 114/227 (50%), Gaps = 31/227 (13%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+HAR
Sbjct: 49 CEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHAR 103
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAML G ++PE K G W+ GA YF P L + +
Sbjct: 104 WAMLAVFGILVPELLEKIGYI--ENFSWYDAGA-------REYFVD--PTTLFVVQMGLM 152
Query: 167 VLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVK 211
V G + + N +D+E K+ +PGG FDP+ + P+ +L+ K
Sbjct: 153 GWVEGRRWADMVNPGSVDIEPKVPHITNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTK 212
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
EIKNGRLAM A +GF+ QA TGEGP+ENL HL+DP N+ + +
Sbjct: 213 EIKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 107/200 (53%), Gaps = 20/200 (10%)
Query: 54 RRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 113
R +++P S P +LTG +P DYG+DP GL K+P + +++Q E+IH+RWAMLG A
Sbjct: 37 RAVWMPG-----STPPAHLTGTLPCDYGFDPLGLGKEPANLARFQEAEIIHSRWAMLGVA 91
Query: 114 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 173
G EA W + A + D T Y G P L V E+ ++ E
Sbjct: 92 GAAGQEAITGV--------TWIE--APVQDSQT--YLGAESPFPLPVVVAIEVFVMAFVE 139
Query: 174 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
R +N D +L+PGG FDP G +K D F LK KEI NGR+AM A G QA T
Sbjct: 140 QQR-SNEKDPAKRLYPGGAFDPAGFSKGAD-FETLKKKEIANGRVAMLAFAGLIGQAQAT 197
Query: 234 G-EGPVENLAKHLSDPFANN 252
EGP+ L +H++DP+ N
Sbjct: 198 NLEGPLSALGRHVADPWHVN 217
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 107/222 (48%), Gaps = 37/222 (16%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T + + PDR ++ P S P +L G +PGD+G+DP GLS P+ EL+H
Sbjct: 55 TVCAAAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVH 109
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
RWAMLGAAG IPE K G P W+ G +T F I
Sbjct: 110 CRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IV 155
Query: 165 EIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFA 206
E++ +G AE R N L D +PGG FDPLG P +
Sbjct: 156 ELIFIGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLK 215
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 216 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 115/213 (53%), Gaps = 34/213 (15%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GD+G+DP GL + P++ Y EL+HAR+AM G AG ++ + G +
Sbjct: 66 PPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAGILVTDLLRVTGISN 125
Query: 129 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAE---YYRITN----- 179
P VW++ GA+ + +T F I +++L+G E Y TN
Sbjct: 126 LP--VWYEAGAVKFEFASTEALF------------IVQLILMGFVETKRYMDFTNPGSQA 171
Query: 180 ----GLDLEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
LE L +PGGP +PLGLA+D K+KEIKNGRLAM AMLG F+
Sbjct: 172 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLARDIKNAHDWKLKEIKNGRLAMVAMLGVFV 231
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 261
QA VT GP+ENL +HLS+P+ ++ IS +
Sbjct: 232 QASVTHAGPIENLVEHLSNPWHKTIIQTISSTS 264
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 107/222 (48%), Gaps = 37/222 (16%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T + + PDR ++ P S P +L G +PGD+G+DP GLS P+ EL+H
Sbjct: 54 TVCAAAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVH 108
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
RWAMLGAAG IPE K G P W+ G +T F I
Sbjct: 109 CRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IV 154
Query: 165 EIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFA 206
E++ +G AE R N L D +PGG FDPLG P +
Sbjct: 155 ELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLK 214
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 215 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 256
>gi|412987928|emb|CCO19324.1| predicted protein [Bathycoccus prasinos]
Length = 415
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 102/187 (54%), Gaps = 14/187 (7%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GD +DP LS + + EL+H RWAML G +PE ++ GA
Sbjct: 225 PSYLDGTLAGDAQFDPLRLSDTEEKRRRNVELELLHGRWAMLAVVGVCVPEILSRSGALE 284
Query: 129 GPEAVWFKTGALLLDGNTLNYFG-KNIPI----NLVFAVIAEIVLVGGAEYYRITNGLDL 183
E +W+K G +L+G +NY G + I ++ + VL+GG EY R L
Sbjct: 285 LSEPIWWKIGEKVLEGIDVNYLGIEGFHIAGASGIIGIAFCQAVLMGGPEYARYVGIESL 344
Query: 184 E--------DKLHP-GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
E D +P GGPFDP L+ D ++ L+V E+K+GRLAM AMLG F QA+VT
Sbjct: 345 EPVGVYLPGDTNYPGGGPFDPFNLSADAERDVELRVSEVKHGRLAMIAMLGVFAQAFVTR 404
Query: 235 EGPVENL 241
EGPV N+
Sbjct: 405 EGPVANV 411
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 107/222 (48%), Gaps = 37/222 (16%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T + + PDR ++ P S P +L G +PGD+G+DP GLS P+ EL+H
Sbjct: 54 TVCAAAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVH 108
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
RWAMLGAAG IPE K G P W+ G +T F I
Sbjct: 109 CRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IV 154
Query: 165 EIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFA 206
E++ +G AE R N L D +PGG FDPLG P +
Sbjct: 155 ELIFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLK 214
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 215 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 256
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 120/215 (55%), Gaps = 35/215 (16%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 123
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 65 SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 123
Query: 124 FGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG- 180
G PE WF+TG + G T +Y+ P L + E+ L+G AE+ R+ +
Sbjct: 124 AGL-IPPETALPWFRTGVIPPAG-TYSYWAD--PYTLF---VFEMALMGFAEHRRLQDWA 176
Query: 181 ----------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
L E L +PGGP F+PLG KD LK+KE+KNGRLAM A
Sbjct: 177 KPGSMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLA 236
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 237 ILGYFVQGLVTGVGPYQNLLDHLADPVHNNILTSL 271
>gi|55668304|gb|AAV54188.1| chloroplast major light-harvesting complex II protein m9
[Haematococcus pluvialis]
Length = 152
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 90/142 (63%), Gaps = 6/142 (4%)
Query: 116 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGA 172
+ PE G + G E VWFK GA + LNY G I N+V + +++L+G
Sbjct: 1 VTPELLAANGVSFG-EPVWFKAGAQIFQDGGLNYLGNPSLIHAQNIVATLAVQVILMGLV 59
Query: 173 EYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
E YR+ G E D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+ GFF+QA
Sbjct: 60 EGYRMNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQA 119
Query: 231 YVTGEGPVENLAKHLSDPFANN 252
VTG+GP++NL HL++P NN
Sbjct: 120 IVTGKGPIQNLTDHLANPAENN 141
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 106/200 (53%), Gaps = 13/200 (6%)
Query: 55 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 113
R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG A
Sbjct: 31 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 90
Query: 114 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 173
G + E +G W+ ++G +FG +P +L + E V + AE
Sbjct: 91 GSLAVELLG-YGN-------WYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAE 142
Query: 174 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
+ PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q T
Sbjct: 143 ----GQRRRCRRRRLPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAAT 198
Query: 234 GEGPVENLAKHLSDPFANNL 253
G+ P+ L +HL++P+A L
Sbjct: 199 GKAPLAALGEHLANPWAPTL 218
>gi|297829418|ref|XP_002882591.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
gi|297328431|gb|EFH58850.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 121/253 (47%), Gaps = 61/253 (24%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 92
DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 51 DRPLWFP-----GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGD 105
Query: 93 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 129
+++ ELIH RWAML G I E
Sbjct: 106 VIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTG------ 159
Query: 130 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLH 188
W G + L+DG++ Y G+ +P ++ + E+++VG E+ R LD E +L+
Sbjct: 160 --VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVVGYIEFQRNAE-LDSEKRLY 214
Query: 189 PGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 247
PGG F DPLGLA DP++ A L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSD
Sbjct: 215 PGGKFFDPLGLASDPEKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSD 274
Query: 248 PFANNLLTVISGN 260
P ++ S +
Sbjct: 275 PLHTTIIDTFSSS 287
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 111/229 (48%), Gaps = 31/229 (13%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+H+R
Sbjct: 47 CEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSR 101
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAML AG +IPE + G F D +F P L +A +
Sbjct: 102 WAMLAVAGILIPECLERLG---------FIENFSWYDAGAQEFFAD--PTTLFVVQLALM 150
Query: 167 VLVGGAEYYRITN--GLDLE-----------DKLHPGG-PFDPLGLAK-DPDQFALLKVK 211
V G + + N +D++ D +PGG FDP + P+ +L+ K
Sbjct: 151 GWVEGRRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTK 210
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
EIKNGRLAM A +GF QA TGEGP+ENL H++DP N+ + +
Sbjct: 211 EIKNGRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFTSQ 259
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 107/215 (49%), Gaps = 37/215 (17%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 111
P+R I+ P S PE+L G +PGD+G+DP GLS P+ E++H RWAMLG
Sbjct: 49 PERPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLG 103
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 171
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 104 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVV-----ELILIGW 149
Query: 172 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 213
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 150 AEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 209
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 210 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 244
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 106/215 (49%), Gaps = 37/215 (17%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 111
P+R I+ P S PE+L G +PGD+G+DP GLS PD E++H RWAMLG
Sbjct: 49 PERPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 103
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 171
AAG IPE K G P W+ G YF + +V E++L+G
Sbjct: 104 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVV-----ELILIGW 149
Query: 172 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 213
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 150 AEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEI 209
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
KNGRL M A++G + Q TG GP++NL HL+DP
Sbjct: 210 KNGRLTMLAVMGAWFQHIYTGTGPIDNLFAHLADP 244
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 105/215 (48%), Gaps = 37/215 (17%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 111
PDR ++ P S P +L G +PGD+G+DP GL+ P+ EL+H RWAMLG
Sbjct: 63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLG 117
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 171
AAG IPE K G P W+ G L +T F I E+ +G
Sbjct: 118 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------IVELFFIGW 163
Query: 172 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 213
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 164 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 223
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 109/205 (53%), Gaps = 28/205 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 62 PSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 121
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 122 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 170
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 171 FKQYSLPPNECGYPGGIFNPLNFAPTIEA----KEKELANGRLAMLAFLGFVIQHNVTGK 226
Query: 236 GPVENLAKHLSDPFANNLLTVISGN 260
GP ENL +H+SDP+ N ++ SGN
Sbjct: 227 GPFENLLQHISDPWHNTIVQTFSGN 251
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 28/204 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F KFG
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIIN 122
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 APQ--WY-------DAGKSEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 171
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFIVQHNVTGK 227
Query: 236 GPVENLAKHLSDPFANNLLTVISG 259
GP ENL +HLSDP+ N ++ I G
Sbjct: 228 GPFENLLQHLSDPWHNTIINTIRG 251
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 105/215 (48%), Gaps = 37/215 (17%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 111
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H+RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLG 116
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 171
AAG IPE K G P W+ G +T F I E+V +G
Sbjct: 117 AAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVFIGW 162
Query: 172 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEI 213
AE R N L D +PGG FDPLG + P + L+ KEI
Sbjct: 163 AEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEI 222
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 119/215 (55%), Gaps = 35/215 (16%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 123
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 65 SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 123
Query: 124 FGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG- 180
G PE WF+TG + G T +Y+ P L + E+ L+G AE+ R +
Sbjct: 124 AGL-IPPETALPWFRTGVIPPAG-TYSYWAD--PYTLF---VFEMALMGFAEHRRFQDWA 176
Query: 181 ----------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
L E L +PGGP F+PLG KD LK+KE+KNGRLAM A
Sbjct: 177 KPGSMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLA 236
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 237 ILGYFVQGLVTGVGPYQNLLDHLADPVHNNILTSL 271
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 106/200 (53%), Gaps = 28/200 (14%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P+YL G + GDYG+DP GL P+ + Y+ EL +ARWAMLG AG + E N
Sbjct: 46 PKYLDGNLAGDYGFDPMGLGANPERLTWYRQAELQNARWAMLGVAGILGQEIIN------ 99
Query: 129 GPEAVWFKTGA----LLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE 184
PE W+ G DGN +N G I ++ V V + R + ++ +
Sbjct: 100 -PEQWWYSAGMPENLPSFDGNKVNMGG----ILAWEFLLMHFVEVRRWQDIRKKDSVNAD 154
Query: 185 -----------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
+ +PGGPFDPLG +K F ++ KEIKNGRLAM A + F +QA T
Sbjct: 155 PFNPNLKVPNPEMGYPGGPFDPLGFSK--GNFKEVQTKEIKNGRLAMVAFVAFTIQAQAT 212
Query: 234 GEGPVENLAKHLSDPFANNL 253
G+GP+ NL HL+ PF+NN+
Sbjct: 213 GKGPLANLTDHLASPFSNNV 232
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 102/208 (49%), Gaps = 32/208 (15%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G +PGD+G+DP GL P+ EL+H RWAMLGAAG IPE K G
Sbjct: 83 PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIPELCTKLGILN 142
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT---------- 178
P W+ G L YF + +V E++ +G AE R
Sbjct: 143 TPS--WYTAG-------ELEYFTDKTTLFVV-----EMIFLGWAEGRRWADILEPGSVNT 188
Query: 179 ------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
N L D +PGG FDPLG P++ L+ KEIKNGRLAM A++G + QA
Sbjct: 189 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQA 248
Query: 231 YVTGEGPVENLAKHLSDPFANNLLTVIS 258
TG GP++NL HL+DP + S
Sbjct: 249 EYTGTGPIDNLLAHLADPGHATIFAAFS 276
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 108/222 (48%), Gaps = 37/222 (16%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T + + PDR ++ P S P +L G +PGD+G+DP GL+ P+ EL+H
Sbjct: 67 TVCAVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVH 121
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
RWAMLGAAG IPE K G P W+ G L +T F I
Sbjct: 122 CRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------IV 167
Query: 165 EIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFA 206
E+ +G AE R N L D +PGG FDPLG P++
Sbjct: 168 ELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIK 227
Query: 207 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 228 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 269
>gi|227202590|dbj|BAH56768.1| AT5G54270 [Arabidopsis thaliana]
Length = 162
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 97/151 (64%), Gaps = 8/151 (5%)
Query: 109 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 165
MLGA G I PE K+ E VWFK G+ + L+Y G + + AV+ +
Sbjct: 1 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 60
Query: 166 IVLVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++L+G E +RI NGLD + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF
Sbjct: 61 VILMGLVEGFRI-NGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMF 119
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 120 SMFGFFVQAIVTGKGPLENLLDHLDNPVANN 150
>gi|303288868|ref|XP_003063722.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
gi|226454790|gb|EEH52095.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
Length = 1523
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 113/211 (53%), Gaps = 25/211 (11%)
Query: 51 GPDRRIFLPEGLLDR----SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
G RR FLP+ LL + +P YLTGE+PGD G+DP + + D +K + ELIH R
Sbjct: 1317 GTTRRKFLPDSLLASLGPSTVVPAYLTGELPGDVGWDPLQMGAQ-RDLTKLRERELIHGR 1375
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL-----LDGNTLNYFGKNIP------ 155
WAML A G + PE K G P + W+ T L G L Y G+ IP
Sbjct: 1376 WAMLAAVGVLTPELTAKLGVFGAPGSHWWNTAINFPTEGGLAGAELTYLGETIPFGLFWL 1435
Query: 156 --INLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFAL--LKV 210
I+L +AE++ G E R GL D+++PGG FDPLG+ +D D+ L LK
Sbjct: 1436 PIIHLPVFFVAEMLRTGKYEVERF-RGL---DRMYPGGSLFDPLGIGRDIDETELKVLKT 1491
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
EI + RLAM A GF ++A + G GP++ L
Sbjct: 1492 IEINHCRLAMTASFGFIVEAALWGAGPLDWL 1522
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 116/209 (55%), Gaps = 31/209 (14%)
Query: 75 EVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCG 129
+PGDYG+DP GLS ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 14 SLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPA 73
Query: 130 PEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-------- 180
A+ WF+TG + G T Y+ N + + E+ L+G AE+ R+ +
Sbjct: 74 ETALPWFQTGVIPPAG-TYTYWADNYTL-----FVLEMALMGFAEHRRLQDWYNPGSMGK 127
Query: 181 ---LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 229
L LE L +PGGPF +PLG KD LK+KE+KNGRLAM A+LG+F+Q
Sbjct: 128 QYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQ 187
Query: 230 AYVTGEGPVENLAKHLSDPFANNLLTVIS 258
VTG GP +NL HL+DP NN+LT +
Sbjct: 188 GLVTGVGPYQNLLDHLADPVNNNVLTSLK 216
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 107/219 (48%), Gaps = 38/219 (17%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 111
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H+RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLG 116
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 171
AAG IPE K G P W+ G +T F I E+V +G
Sbjct: 117 AAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVFIGW 162
Query: 172 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEI 213
AE R N L D +PGG FDPLG + P + L+ KEI
Sbjct: 163 AEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEI 222
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENL-AKHLSDPFAN 251
KNGRLAM A++G + Q TG GP++NL A HL+DP A
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADPHAT 261
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 129/263 (49%), Gaps = 62/263 (23%)
Query: 41 SPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------- 92
S P + P+ DR ++ P ++ PE+L G + GDYG+DPFGL K +
Sbjct: 39 SAPKRSAKPTS-DRPLWYPG-----AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDS 92
Query: 93 -----------------------------------DFSKYQAYELIHARWAMLGAAGFII 117
+++ ELIH RWAML G +
Sbjct: 93 LDQNLAKNIAGDIIGTRTEAADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALT 152
Query: 118 PEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 176
E W G + L++G++ Y G+ +P ++ + E++++G E+ R
Sbjct: 153 VEWLTG--------VTWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR 202
Query: 177 ITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+ LD E +L+PGG F DPLGLA+DP++ A L++ EIK+ RLAM A LGF +QA VTG+
Sbjct: 203 NSE-LDPEKRLYPGGKFFDPLGLAEDPEKKATLQLAEIKHARLAMVAFLGFAVQAAVTGK 261
Query: 236 GPVENLAKHLSDPFANNLLTVIS 258
GP+ N A HLSDP ++ S
Sbjct: 262 GPLNNWATHLSDPLHTTIIDNFS 284
>gi|47026851|gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyacinthus orientalis]
Length = 239
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 117/223 (52%), Gaps = 26/223 (11%)
Query: 10 LQVHQTLLLSSPLLSSPRRKPPLLPSLS-----------PSPSPPLTKSSPS---GPDRR 55
L + T+ LSSP L+ K L PS S + P T SS S GP+R
Sbjct: 11 LSMASTMALSSPSLAGTAVK--LTPSSSVVSGDGRFTMRKTAGKPKTVSSGSPWYGPERV 68
Query: 56 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 115
+L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G
Sbjct: 69 KYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGC 125
Query: 116 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGA 172
+ PE + G G EAVWFK GA + L+Y G + + A+ A +++L+G
Sbjct: 126 VFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMGAV 184
Query: 173 EYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQ-FALLKVKE 212
E YR+ G ++ D L+PGG FDPLGLA+ FA V E
Sbjct: 185 EGYRVAGGPLGEVVDPLYPGGSFDPLGLARRSKTPFASSNVNE 227
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 112/229 (48%), Gaps = 31/229 (13%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
+ P PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+H
Sbjct: 15 SVCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMH 69
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
+RWAML AG +IPE + G F D +F P L +A
Sbjct: 70 SRWAMLAVAGILIPECLERLG---------FIENFSWYDAGAQEFFAD--PTTLFVVQLA 118
Query: 165 EIVLVGGAEYYRITN--GLDLE-----------DKLHPGG-PFDPLGLAK-DPDQFALLK 209
+ V G + + N +D++ D +PGG FDP + P+ +L+
Sbjct: 119 LMGWVEGRRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLR 178
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
KEIKNGRLAM A +GF QA TGEGP+ENL H++DP N+ + +
Sbjct: 179 TKEIKNGRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFT 227
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 114/232 (49%), Gaps = 37/232 (15%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P PDR ++ P S PE+L G +PGD+G+DP GL PD + ELIH+R
Sbjct: 57 CEPLPPDRPLWFPG-----SAPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSR 111
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAML G +IPE + G F + + YF + + +A++
Sbjct: 112 WAMLAVTGILIPECLERLG---------FIENFSWYEAGSREYFADSTTL-----FVAQM 157
Query: 167 VLVGGAEYYRITN-----GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALL 208
VL+G AE R + +D+E K +PGG FD + + P+ +L
Sbjct: 158 VLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVL 217
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+ KEIKNGRLAM A +GF QA T + P+ENL HL+DP N+ + + +
Sbjct: 218 RTKEIKNGRLAMLAFVGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 269
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 109/217 (50%), Gaps = 31/217 (14%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P PDR ++ P S PE+L G +PGD+G+DP GL P+ EL+HAR
Sbjct: 55 CEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHAR 109
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAMLG +G +IPE K G W+ G ++ YF P L +A +
Sbjct: 110 WAMLGVSGILIPEILEKIGYV--KNFSWYNAG-------SVEYFAD--PTTLFIVQLALM 158
Query: 167 VLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVK 211
V G + I N +D+E KL +PGG FDP+ + P+ +L+ K
Sbjct: 159 GWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTK 218
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
EIKNGRLAM A LGF QA G P++NL HL+DP
Sbjct: 219 EIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADP 255
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 116/210 (55%), Gaps = 33/210 (15%)
Query: 75 EVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCG 129
+PGDYG+DP GLS K+ AY E+I+ R+AMLGA G I PE F K G
Sbjct: 5 RLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGI-IP 63
Query: 130 PEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------- 180
PE WFKTG + G T NY+ + + + + L+G AE+ R+ +
Sbjct: 64 PETALPWFKTGVIPPAG-TYNYWADSYTL-----FVFNMALMGFAEHRRLQDWYNPGSMG 117
Query: 181 ----LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
L LE D +PGGP F+PLG K + LK+KEIKNGRLAM A+LG+F+
Sbjct: 118 KQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFI 177
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
Q VTG GP +NL HL+DP NN+LT +
Sbjct: 178 QGLVTGVGPFQNLLDHLADPVNNNVLTSLK 207
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 113/227 (49%), Gaps = 31/227 (13%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P PDR ++ P S PE+L G +PG++G+DP GL P+ EL+HAR
Sbjct: 55 CEPLPPDRPLWFPG-----SSPPEWLDGSLPGNFGFDPLGLGSDPELLKWLAQAELMHAR 109
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAMLG +G +IPE K G W+ G ++ YF P L +A +
Sbjct: 110 WAMLGVSGILIPEILEKIGYV--KNFSWYNAG-------SVEYFAD--PTTLFIVQLALM 158
Query: 167 VLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVK 211
V G + I N +D+E KL +PGG FDP+ + P+ +L+ K
Sbjct: 159 GWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTK 218
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
EIKNGRLAM A LGF QA G P++NL HL+DP N+ + +
Sbjct: 219 EIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFT 265
>gi|162458005|ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
gi|195639374|gb|ACG39155.1| hypothetical protein [Zea mays]
gi|414887094|tpg|DAA63108.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 1 [Zea
mays]
gi|414887095|tpg|DAA63109.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 2 [Zea
mays]
Length = 291
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 125/267 (46%), Gaps = 61/267 (22%)
Query: 40 PSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------- 92
P+P + + DR ++ P + P+YL G + GDYG+DPFGL K +
Sbjct: 41 PAPKKVAKTSTSSDRPLWFPGAV-----APDYLDGSLVGDYGFDPFGLGKPVEYLQFELD 95
Query: 93 ------------------------------------DFSKYQAYELIHARWAMLGAAGFI 116
+++ ELIH RWAML G +
Sbjct: 96 SLDQNLAKNEAGGIIGTRFESSEVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGAL 155
Query: 117 IPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYY 175
E W G + L+DG++ Y G+ +P ++ + E++++G E+
Sbjct: 156 SVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQ 205
Query: 176 RITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234
R LD E +L+PGG FDPLGLA DP++ L++ EIK+ RLAM A LGF +QA TG
Sbjct: 206 RNAE-LDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATG 264
Query: 235 EGPVENLAKHLSDPFANNLLTVISGNA 261
+GP+ N A HLSDP + G++
Sbjct: 265 KGPLNNWATHLSDPLHTTIFDTFGGSS 291
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 112/227 (49%), Gaps = 31/227 (13%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
P PDR ++ P S PE+L G +PGD+G+DP GL P+ + EL+H+R
Sbjct: 49 CEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSR 103
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAML G ++PE + G + D T YF P L + +
Sbjct: 104 WAMLAVFGILVPELLERIG---------YIENFSWYDAGTREYFVD--PTTLFVVQMGLM 152
Query: 167 VLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVK 211
V G + I N +D+E K+ +PGG FDP+ + P+ +L+ K
Sbjct: 153 GWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTK 212
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
EIKNG LAM A +GF+ QA TGEGP+ENL HL+DP N+ + +
Sbjct: 213 EIKNGGLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 104/215 (48%), Gaps = 37/215 (17%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 111
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 117
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 171
AAG IPE K G P W+ G L +T F + E+ +G
Sbjct: 118 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------VVELFFIGW 163
Query: 172 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 213
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 164 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 223
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 224 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 100/198 (50%), Gaps = 32/198 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
PE+L G +PGD+G+DP GLS P+ EL+H+RWAMLGAAG IPE K G
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------- 177
P W+ G +T F I E+V +G AE R
Sbjct: 61 TPS--WYTAGEQEYFTDTTTLF------------IVELVFIGWAEGRRWADILNPGCVNT 106
Query: 178 -----TNGLDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
N L D +PGG FDPLG + P + L+ KEIKNGRLAM A++G + Q
Sbjct: 107 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQH 166
Query: 231 YVTGEGPVENLAKHLSDP 248
TG GP++NL HL+DP
Sbjct: 167 IYTGTGPIDNLFAHLADP 184
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 125/262 (47%), Gaps = 61/262 (23%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------ 92
++ S DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 45 SRGSGRDTDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQN 99
Query: 93 -------------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAF 121
+++ ELIH RWAML G + E
Sbjct: 100 LAKNVAGDIIGTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWL 159
Query: 122 NKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 180
W G + L++G++ Y G+ +P ++ + E++++G E+ R
Sbjct: 160 TG--------VTWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQRNAE- 208
Query: 181 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
LD E +L+PGG FDPLGLA DP++ A L++ EIK+ RLAM LGF +QA TG+GP+
Sbjct: 209 LDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLN 268
Query: 240 NLAKHLSDPFANNLLTVISGNA 261
N A HLSDP ++ S ++
Sbjct: 269 NWATHLSDPLHTTIIDTFSSSS 290
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 28/205 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 62 PSYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 121
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 122 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 170
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 171 FKQYSLPPNECGYPGGIFNPLNFAPTIEA----KEKELANGRLAMLAFLGFVIQHNVTGK 226
Query: 236 GPVENLAKHLSDPFANNLLTVISGN 260
GP +NL +H+SDP+ N ++ SGN
Sbjct: 227 GPFDNLLQHISDPWHNTIVQTFSGN 251
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/269 (32%), Positives = 125/269 (46%), Gaps = 68/269 (25%)
Query: 34 PSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK---- 89
P+ S +PP T DR ++ P ++ PEYL G + GDYG+DPFGL K
Sbjct: 41 PAKKASRAPPTT-------DRPLWFPG-----AQAPEYLDGTLVGDYGFDPFGLGKPAEY 88
Query: 90 ---KPDDF------------------------------------SKYQAYELIHARWAML 110
PD +++ ELIH RWAML
Sbjct: 89 LQYDPDSLDQNLAQNLAGEVIGTRFEDADIKSTPLQPYAEVFGLQRFRECELIHGRWAML 148
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLV 169
G + E W G + L+DG++ Y G+ +P + + E++++
Sbjct: 149 ATLGALTVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFTITTLIWIEVLVI 198
Query: 170 GGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
G E+ R LD E +L+PGG FDPLGLA DP++ L++ EIK+ RLAM LGF +
Sbjct: 199 GYIEFQRNAE-LDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVGFLGFAV 257
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVI 257
QA TG+GP+ N A HLSDP + +
Sbjct: 258 QAAATGKGPLNNWATHLSDPLHTTIFDTL 286
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 120/233 (51%), Gaps = 37/233 (15%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T++ R +LP GL + P YL G + GDYG+DP GL + P+ Y EL+H
Sbjct: 51 TRAVVRAQQRPTWLP-GL----DSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVH 105
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
AR+AMLG AG + + G P VW++ GA+ + + ++
Sbjct: 106 ARFAMLGIAGILFTDLLRVTGIRKLP--VWYEAGAVKYEFASTRTL-----------LVV 152
Query: 165 EIVLVGGAEYYRITNGLD------------LEDKL------HPGGPF-DPLGLAKDPDQF 205
+++ +G AE R + + +E L +PGGP +P GLAKD
Sbjct: 153 QLLWMGYAETRRYMDYVSPGSQNKEGSFFGMEAALEGLEPGYPGGPLLNPFGLAKDIRSA 212
Query: 206 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
K+KEIKNGRLAM AMLG F+QA VT GP++NL +HLSDP+ ++ +S
Sbjct: 213 RDWKLKEIKNGRLAMVAMLGIFVQAAVTHTGPIDNLLEHLSDPWHKTIIQTLS 265
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F K G
Sbjct: 63 PMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 171
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPPNECGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIVQHNVTGK 227
Query: 236 GPVENLAKHLSDPFANNLLTVISGN 260
GP +NL +H+SDP+ N ++ GN
Sbjct: 228 GPFDNLLQHISDPWHNTIVQTFGGN 252
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 111/202 (54%), Gaps = 15/202 (7%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GD+G+DP GL + P+ Y EL+H+R+AM G AG + + G +
Sbjct: 74 PPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRTTGLSN 133
Query: 129 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLV--------GGAEYYRITN 179
P VW++ GA NT F I L+ + + G A ++ +
Sbjct: 134 LP--VWYEAGATKFQFANTTTLF---IVQMLLMGFVETKRYMDFKNPGSQGEASFFGLEA 188
Query: 180 GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238
L+ + +PGGP +PLG+AKD K+KEIKNGRLAM A+LG F+QA VT GP+
Sbjct: 189 ALEGLEPGYPGGPILNPLGIAKDIKNAPEWKLKEIKNGRLAMVAILGIFVQASVTHVGPL 248
Query: 239 ENLAKHLSDPFANNLLTVISGN 260
ENL +HLSDP+ ++ ++S +
Sbjct: 249 ENLVEHLSDPWHTTIIQILSAS 270
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 124/251 (49%), Gaps = 61/251 (24%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 92
DR ++ P ++ PE+L G + GDYG+DPFGL K +
Sbjct: 49 DRPLWFP-----GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGD 103
Query: 93 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 129
+++ ELIH RWAML G + E
Sbjct: 104 IIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG------ 157
Query: 130 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLH 188
W G + L++G++ Y G+ +P ++ + E++++G E+ R LD E +L+
Sbjct: 158 --VTWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQRNAE-LDPEKRLY 212
Query: 189 PGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 247
PGG F DPLGLA+DP++ A+L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSD
Sbjct: 213 PGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSD 272
Query: 248 PFANNLLTVIS 258
P ++ S
Sbjct: 273 PLHTTIIDNFS 283
>gi|226500382|ref|NP_001141936.1| uncharacterized protein LOC100274085 [Zea mays]
gi|194706506|gb|ACF87337.1| unknown [Zea mays]
gi|414884911|tpg|DAA60925.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
gi|414884912|tpg|DAA60926.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 164
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 97/163 (59%), Gaps = 18/163 (11%)
Query: 109 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFA 161
ML A G ++PE + FG E VW+K G L G+ L+Y G IP +V
Sbjct: 1 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLG--IPGFRIAGGQGVVVI 58
Query: 162 VIAEIVLVGGAEYYRITNGLDLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKE 212
I + +L+ G EY R LE D +PGGP FDPLGL+KDP F LKVKE
Sbjct: 59 AICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKE 118
Query: 213 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
IKNGRLAM A GF++QA VTG+GPV+NL +HLSDP NN+L+
Sbjct: 119 IKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILS 161
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 113/226 (50%), Gaps = 32/226 (14%)
Query: 49 PSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 108
PS R L S+ P YL ++PG YG+DP L + P Y EL+H+R+A
Sbjct: 25 PSNGSRVCMKAGNWLPGSKTPAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFA 83
Query: 109 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 168
M AG +IPE FGA P VW++ G + + IP N + A+ EI
Sbjct: 84 MAAVAGILIPEVLKAFGAVNLP--VWYEAGKYAQESSP-------IPFNTLIAL--EIFA 132
Query: 169 VGGAEYYRITN--------------GLD-----LEDKLHPGGPFDPLGLAKDPDQFALLK 209
E R + GL+ + +PGG FDPLGL+K P + +K
Sbjct: 133 FNFVEIKRWQDFKKPGSQGEEGSFVGLEGFFKGTGENGYPGGVFDPLGLSKGPG-YEAMK 191
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
++EIKNGRLAM A +GF Q TG+GP+ENL HLS+P ANN T
Sbjct: 192 LREIKNGRLAMLAFIGFASQYLATGKGPIENLLDHLSNPLANNFTT 237
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 113/212 (53%), Gaps = 32/212 (15%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GDYG+DP GL + P+ Y EL+HAR+AMLG G ++ + G +
Sbjct: 14 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSK 73
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 182
P VWF+ GA+ K N +I +++L+G AE R + +
Sbjct: 74 IP--VWFEAGAV-----------KYEFTNTQTLIIVQLLLMGFAETKRYMDFISPGSQAK 120
Query: 183 ------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 229
LE +PGGP +PLGLAKD K+KEIKNGRLAM A+LG F+Q
Sbjct: 121 EGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQ 180
Query: 230 AYVTGEGPVENLAKHLSDPFANNLLTVISGNA 261
A VT GP++NL +HLS+P+ ++ ++ +
Sbjct: 181 ASVTHVGPIDNLVEHLSNPWHKTVIQTLASSG 212
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 115/237 (48%), Gaps = 56/237 (23%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 92
PE+L G + GDYG+DPFGL K +
Sbjct: 66 PEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 125
Query: 93 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 144
+++ ELIH RWAML G + E W G + L+DG
Sbjct: 126 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDG 177
Query: 145 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPD 203
++ Y G+ +P ++ + E+++VG E+ R LD E +L+PGG FDPLGLA DP+
Sbjct: 178 SS--YLGQPLPFSISTLIWIEVLVVGYIEFQRNAE-LDSEKRLYPGGKYFDPLGLAADPE 234
Query: 204 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 235 KRAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 291
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 114/241 (47%), Gaps = 41/241 (17%)
Query: 37 SPSPSPPLTKSSPSGP--DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 94
SP P+ + PS P DR ++ P S+ PE+L G +PGD+G+DP GL P+
Sbjct: 47 SPQAEAPV-PAQPSLPNNDRPLWFPG-----SQPPEWLDGSLPGDFGFDPLGLGSDPELL 100
Query: 95 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 154
+ EL+H RWAMLGAAG IPEA K G P D TL
Sbjct: 101 KWFVQAELVHCRWAMLGAAGIFIPEALTKAGILNTPSWTVAGDQQYFTDATTL------- 153
Query: 155 PINLVFAVIAEIVLVGGAEYYRI----------------TNGLDLEDKLHPGG-PFDPLG 197
+ EI+L AE R N L D +PGG FDPLG
Sbjct: 154 -------FVIEIILFAWAEGRRWADIINPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLG 206
Query: 198 LAKDPDQFAL--LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
+ D L L+ +EIKNGRLAM A+LG +QA T GP++NL HL+DP N +
Sbjct: 207 WGQTGDAAKLKDLRTREIKNGRLAMLAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIFA 266
Query: 256 V 256
+
Sbjct: 267 L 267
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 104/215 (48%), Gaps = 37/215 (17%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 111
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 74 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 128
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 171
AAG IPE K G P W+ G L +T F + E+ +G
Sbjct: 129 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF------------VVELFFIGW 174
Query: 172 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 213
AE R N L D +PGG FDPLG P++ L+ KEI
Sbjct: 175 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 234
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
KNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 235 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 269
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 116/226 (51%), Gaps = 46/226 (20%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 112
DR+++ P G++ PEYL GE+ GDYG+DP GL P Y+ EL HARWAMLG
Sbjct: 19 DRKLWAP-GVV----APEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 73
Query: 113 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIV 167
AG ++ E P+ +++ G +N+P IN+ + E +
Sbjct: 74 AGVLVQEIVK-------PDVYFYEAG-----------LPQNLPEPFTNINMGGLLAWEFI 115
Query: 168 LVGGAEYYRITN----GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVK 211
L+ E R + G ED + +PGG FDP G +K F L+ K
Sbjct: 116 LMHWVEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSK--GDFKELQTK 173
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
EIKNGRLAM A + F LQA TG+GP+ L+ HLS+PF NN+L I
Sbjct: 174 EIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNI 219
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 99/190 (52%), Gaps = 13/190 (6%)
Query: 55 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 113
R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG A
Sbjct: 31 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 90
Query: 114 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE 173
G + E W+ ++G +FG +P +L + E V + AE
Sbjct: 91 GSLAVELLGY--------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAE 142
Query: 174 YYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
R D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q T
Sbjct: 143 GQRG----DAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAAT 198
Query: 234 GEGPVENLAK 243
G+GP+ A
Sbjct: 199 GKGPIAAWAS 208
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 102/201 (50%), Gaps = 32/201 (15%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
S PE+L G +PGD+G+DP GL +P+ + E++H RWAMLGAAG IPE K G
Sbjct: 68 STAPEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKIG 127
Query: 126 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT------- 178
P W+ G YF + +V E++ +G AE R
Sbjct: 128 ILNTPS--WYTAG-------EQTYFADQTTLFIV-----ELLFMGWAEGRRWADILKPGS 173
Query: 179 ---------NGLDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
N L D +PGG FDPLG A + L+ KEIKNGRLAM A++G +
Sbjct: 174 VNTDPVFPNNKLTGTDVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKNGRLAMLAVMGAW 233
Query: 228 LQAYVTGEGPVENLAKHLSDP 248
QA TG GP++NL HL+DP
Sbjct: 234 FQAVYTGTGPIDNLFAHLADP 254
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 109/210 (51%), Gaps = 41/210 (19%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P+YL GE+ GDYG+DP GL P Y+ EL+HARWAMLG AG ++ E
Sbjct: 42 PDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEVVK------ 95
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIVLVGGAEYYRITN---- 179
P+ +++ G +N+P +N+ + E +L+ E R +
Sbjct: 96 -PDVYFYEAG-----------LPQNLPEPFTNVNMGGLLAWEFILMHWVEVRRWQDYKNF 143
Query: 180 GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
G ED + +PGG FDPLG +K L+ KEIKNGRLAM A +GF
Sbjct: 144 GSVNEDPIFKGNKVPNPEMGYPGGIFDPLGFSK--GNLKELQTKEIKNGRLAMVAYMGFV 201
Query: 228 LQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
LQA TG+GP+ L+ HLS+PF NN+L I
Sbjct: 202 LQAQATGKGPLAALSAHLSNPFGNNILKNI 231
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 127/263 (48%), Gaps = 62/263 (23%)
Query: 41 SPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------- 92
+ P S PS DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 40 AAPKKFSKPSA-DRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPVEYLQYDLDS 93
Query: 93 -----------------------------------DFSKYQAYELIHARWAMLGAAGFII 117
+++ ELIH RWAML G +
Sbjct: 94 LDQNLAKNMAGDIIGTRVESSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALS 153
Query: 118 PEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 176
E W G + L++G++ Y G+ +P ++ + E++L+G E+ R
Sbjct: 154 VEWLTG--------VTWQDAGKVELVEGSS--YLGQPLPFSISTLIWIEVLLIGYIEFQR 203
Query: 177 ITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
LD E +L+PGG F DPLGLA DP++ A L++ EIK+ RLAM LGF +QA VTG+
Sbjct: 204 NAE-LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVGFLGFAVQAAVTGK 262
Query: 236 GPVENLAKHLSDPFANNLLTVIS 258
GP+ N A HLSDP ++ ++
Sbjct: 263 GPLNNWATHLSDPLHTTIIDTLT 285
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 125/265 (47%), Gaps = 63/265 (23%)
Query: 41 SPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------- 92
SP K+ S DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 41 SPKKAKTVIS--DRPLWFPG-----AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDS 93
Query: 93 -----------------------------------DFSKYQAYELIHARWAMLGAAGFII 117
+++ ELIH RWAML G I
Sbjct: 94 LDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAIT 153
Query: 118 PEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR 176
E W G + L+DG++ Y G+ +P ++ + E++++G E+ R
Sbjct: 154 VEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQR 203
Query: 177 ITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
LD E +L+PGG F DPLGLA DP + A L++ EIK+ RLAM LGF +QA TG+
Sbjct: 204 NAE-LDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGK 262
Query: 236 GPVENLAKHLSDPFANNLLTVISGN 260
GP+ N A HLSDP ++ S +
Sbjct: 263 GPLNNWATHLSDPLHTTIIDTFSSS 287
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 117/241 (48%), Gaps = 56/241 (23%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPD--------------------------------- 92
++ PEYL G + GDYG+DPFGL K +
Sbjct: 61 AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKS 120
Query: 93 ----------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-L 141
+++ ELIH RWAML G + E W G + L
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVEL 172
Query: 142 LDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAK 200
++G++ Y G+ +P ++ + E +++G E+ R LD E +L+PGG FDPLGLA
Sbjct: 173 VEGSS--YLGQPLPFSITTLIWIEALVIGYIEFQRNAE-LDPEKRLYPGGSYFDPLGLAS 229
Query: 201 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
DP++ A L++ EIK+ RLAM LGF +QA VTG+GP+ N A HLSDP ++ S +
Sbjct: 230 DPEKKATLQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSS 289
Query: 261 A 261
+
Sbjct: 290 S 290
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 103/194 (53%), Gaps = 21/194 (10%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +P DYG+DP GL K+PD+ +++Q ELIHARWAMLG +G
Sbjct: 46 PSYLDGSMPCDYGFDPLGLGKEPDNLARFQEAELIHARWAMLGVSG------------AA 93
Query: 129 GPEAVWFKTGALLLDG---NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 185
G E + TG ++ + Y G IP L E+ ++ E R + D
Sbjct: 94 GAEII---TGINWVEAPVQSQQTYLGNTIPFPLPAIAAIEVFVMAYVESKRGSE-TDRSK 149
Query: 186 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG-EGPVENLAKH 244
+++PGG FDP G +K D F LK KE+ NGR+AM A G +A EGPV LA+H
Sbjct: 150 RMYPGGAFDPAGFSKGAD-FEKLKRKELANGRVAMLAFAGIIGEAQANNLEGPVAALARH 208
Query: 245 LSDPFANNLLTVIS 258
L+DP+ N T ++
Sbjct: 209 LADPWHVNAATNVA 222
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 105/208 (50%), Gaps = 32/208 (15%)
Query: 71 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 130
+L G +PGD+G+DPFGL PD + ELIH+RWAML G IIPE + G
Sbjct: 78 WLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLG----- 132
Query: 131 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-----GLDLE- 184
F D + YF + + +A++VL+G AE R + +D+E
Sbjct: 133 ----FIENFSWYDAGSREYFADSTTL-----FVAQMVLMGWAEGRRWADLIKPGSVDIEP 183
Query: 185 ----------DKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
D +PGG FD + + P+ +L+ KEIKNGRLAM A LGF QA
Sbjct: 184 KYPHKVNPKPDAGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATY 243
Query: 233 TGEGPVENLAKHLSDPFANNLLTVISGN 260
T + P+ENL HL+DP N+ + + +
Sbjct: 244 TSQDPIENLMAHLADPGHCNVFSAFTSH 271
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 114/211 (54%), Gaps = 32/211 (15%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GDYG+DP GL + P+ Y EL+HAR+AMLG G ++ + G +
Sbjct: 67 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSK 126
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 179
P VWF+ GA+ K N +I +++L+G AE R +
Sbjct: 127 IP--VWFEAGAV-----------KYEFTNTQTLIIVQLLLMGFAETKRYMDFIGPGSQAK 173
Query: 180 -----GLDLE----DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 229
GL+ + +PGGP +PLGLAKD K+KEIKNGRLAM A+LG F+Q
Sbjct: 174 EGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQ 233
Query: 230 AYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
A VT GP++NL +HLS+P+ ++ ++ +
Sbjct: 234 ASVTHVGPIDNLVEHLSNPWHKTVIQTLASS 264
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 113/211 (53%), Gaps = 32/211 (15%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GD+G+DP GL + P Y EL+HAR+AM G AG + + G
Sbjct: 67 PPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLLRVTGIRK 126
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD------ 182
P VW++ GA+ + + ++ +++L+G AE R + +
Sbjct: 127 LP--VWYEAGAVKFEFASTRTL-----------IVVQLLLMGFAETKRYMDFVSPGSQAK 173
Query: 183 ------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 229
LE L +PGGP +PLGLA+D + + K+KEIKNGRLAM AM+G F+Q
Sbjct: 174 EGSFFGLESALEGLEPGYPGGPLLNPLGLARDIENAHVWKLKEIKNGRLAMVAMVGIFVQ 233
Query: 230 AYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
A VT GP++NL +HLS+P+ ++ ++ +
Sbjct: 234 AAVTHAGPIDNLIEHLSNPWHRTIIQTLANS 264
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 115/211 (54%), Gaps = 31/211 (14%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPD-----DFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
YL G +PGDYG+DP GLS D + + E+I+ R+AMLGAAG I PE F K
Sbjct: 70 SYLDGSLPGDYGFDPLGLSDPQGAGGFIDPNWLRYAEIINGRFAMLGAAGAIAPEIFGKI 129
Query: 125 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 180
G A+ WF+TG + G +Y+ P L + E+ L+G AE+ R +
Sbjct: 130 GLIPQETAIPWFQTGVIPPLGQ-YSYWAD--PYTLF---VLEMALMGFAEHRRAQDYYKP 183
Query: 181 --------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 224
L E D +PGGP F+ LG +D LKVKE+KNGRLAM A+L
Sbjct: 184 GSMGKQYFLGFEKVLGGSGDPAYPGGPLFNFLGFGRDEKSMKDLKVKEVKNGRLAMLAVL 243
Query: 225 GFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
G+F+QA TG GP +NL HLSDP NN+LT
Sbjct: 244 GYFIQAIFTGVGPFQNLLDHLSDPANNNVLT 274
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 115/214 (53%), Gaps = 34/214 (15%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G + GD+G+DP GL++ P Y EL+H R+AMLG G ++ + G +
Sbjct: 64 PPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISK 123
Query: 129 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD----- 182
P VWF+ GA+ D NT F + ++VL+G E R + +
Sbjct: 124 IP--VWFEAGAVKYDFANTKTLF------------LVQLVLMGFVETKRYMDFVSPGSQA 169
Query: 183 -------LEDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
LE L +PGGP +PLGLAKD + K+KEIKNGRLAM AMLG F+
Sbjct: 170 KEGSFFGLEASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFV 229
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAE 262
QA VT GP++NL +HLS+P+ ++ ++ ++
Sbjct: 230 QASVTHVGPIDNLVEHLSNPWHKTIIQTLANSSS 263
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 109/226 (48%), Gaps = 31/226 (13%)
Query: 46 KSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 105
KS G R LP + + +P YL G +PGD+G+DP L +P Y EL+HA
Sbjct: 46 KSKQGGAKRDPSLPS-WMPGATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHA 104
Query: 106 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 165
R+AML AG ++PE G + W G D YF P + +F V +
Sbjct: 105 RFAMLAVAGILVPELLTNIGFS------WPGAGVAWYDAGKFQYFA---PASSLFGV--Q 153
Query: 166 IVLVGGAEYYRITNGL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALL 208
++L AE R + + D + +PGG FDP G +K L
Sbjct: 154 MLLFAWAELRRYQDFVKPGSANQDPIFSNNKLPDGNEPGYPGGIFDPFGWSK--GDMKSL 211
Query: 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 254
K KEIKNGRLAM A GF QAY TG P++NLA HL+DP+A +
Sbjct: 212 KTKEIKNGRLAMLAFAGFAAQAYTTGTTPLKNLATHLADPWATTVW 257
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 116/217 (53%), Gaps = 34/217 (15%)
Query: 71 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 125
YL G +PGD+G+DP GL + K+ Y E+IHARWAMLGAAG I PE
Sbjct: 56 YLDGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLG--A 113
Query: 126 ANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
A P+A WF++G + G+ Y+ P + F EIV + AE R+ +
Sbjct: 114 AGLIPDATNIKWFESGVIPPAGSYNGYWAD--PYTIFFV---EIVAMQFAELRRLQDFRY 168
Query: 181 ---------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L LE D +PGGPF + L K LK+KEIKNGRLAM AM
Sbjct: 169 PGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAM 228
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
LG+ QA +TG+GP +NL +HL+DP NN+LT +G
Sbjct: 229 LGYGAQAVMTGKGPFQNLVEHLADPVNNNILTNFAGR 265
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 61/254 (24%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 92
DR ++ P ++ P++L G + GDYG+DPFGL K +
Sbjct: 51 DRPLWFPG-----AKSPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGD 105
Query: 93 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 129
+++ ELIH RWAML G + E
Sbjct: 106 VIGTRTEEAAPKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG------ 159
Query: 130 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLH 188
W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD E +L+
Sbjct: 160 --VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLY 214
Query: 189 PGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 247
PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSD
Sbjct: 215 PGGKFFDPLGLASDPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSD 274
Query: 248 PFANNLLTVISGNA 261
P ++ S ++
Sbjct: 275 PLHTTIIDTFSSSS 288
>gi|356496185|ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 117/241 (48%), Gaps = 56/241 (23%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPD--------------------------------- 92
++ PEYL G + GDYG+DPFGL K +
Sbjct: 61 AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKS 120
Query: 93 ----------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-L 141
+++ ELIH RWAML G + E W G + L
Sbjct: 121 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVEL 172
Query: 142 LDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAK 200
++G++ Y G+ +P ++ + E++++G E+ R LD E +L+PGG FDPLGLA
Sbjct: 173 VEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQRNAE-LDPEKRLYPGGSYFDPLGLAS 229
Query: 201 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
DP++ A L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 230 DPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 289
Query: 261 A 261
+
Sbjct: 290 S 290
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 111/204 (54%), Gaps = 28/204 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ Y EL+++RWAMLG AG ++PE F K G
Sbjct: 60 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 119
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 168
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A P + A K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 169 FKNYSLPPNEVGYPGGIFNPLNFA--PTEEA--KEKELANGRLAMLAFLGFIVQHNVTGK 224
Query: 236 GPVENLAKHLSDPFANNLLTVISG 259
GP +NL +H+SDP+ N ++ + G
Sbjct: 225 GPFDNLLQHISDPWHNTIIQTLRG 248
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 105/204 (51%), Gaps = 28/204 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F K G
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 179
P+ W+ D YF + + ++ ++ V + + I N
Sbjct: 123 APQ--WY-------DAGKSEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 180 ----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
L + +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPQHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFIVQHNVTGK 227
Query: 236 GPVENLAKHLSDPFANNLLTVISG 259
GP ENL +HLSDP+ N ++ I G
Sbjct: 228 GPFENLLQHLSDPWHNTIINTIRG 251
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 111/204 (54%), Gaps = 28/204 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ Y EL+++RWAMLG AG ++PE F K G
Sbjct: 63 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A P + A K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKNYSLPPNEVGYPGGIFNPLNFA--PTEEA--KEKELANGRLAMLAFLGFIVQHNVTGK 227
Query: 236 GPVENLAKHLSDPFANNLLTVISG 259
GP +NL +H+SDP+ N ++ + G
Sbjct: 228 GPFDNLLQHISDPWHNTIIQTLRG 251
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 107/205 (52%), Gaps = 31/205 (15%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGAN 127
P++L G +PGDYG+DP GL + Y+ EL HARWAMLG G PE N F
Sbjct: 52 PKHLDGTMPGDYGFDPLGLGEDKVALEWYKQAELQHARWAMLGVTGMAAPELIQNPFVEG 111
Query: 128 CGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDL 183
P W + A L DG Y N +F V ++ ++ AE R + G
Sbjct: 112 AMPN--WAE--APLWDG----YMASP---NTLFVV--QMFMMNWAEVRRWQDMKNPGTMN 158
Query: 184 EDKL-------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
ED L +P G FDP+G+AKDP++ +LKVKEI NGRLAM A++G +Q
Sbjct: 159 EDPLTGANKGDTNTDVGYPKGLFDPMGMAKDPEKVKVLKVKEIANGRLAMVAVMGCIIQN 218
Query: 231 YVTGEGPVENLAKHLSDPFANNLLT 255
TG GP+ NL HL+DP N + T
Sbjct: 219 EATGVGPIANLKAHLADPAHNTIFT 243
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 123/260 (47%), Gaps = 63/260 (24%)
Query: 49 PSGP--DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------- 92
PS P DR ++ P + P+YL G + GDYG+DPFGL K +
Sbjct: 47 PSAPTTDRPLWFPGAV-----APDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLA 101
Query: 93 -----------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNK 123
+++ ELIH RWAML G + E
Sbjct: 102 KNNAGEIIGTRFETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG 161
Query: 124 FGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLD 182
W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD
Sbjct: 162 --------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LD 210
Query: 183 LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
E +L+PGG FDPLGLA DP++ L++ EIK+ RLAM A LGF +QA TG+GP+ N
Sbjct: 211 PEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNW 270
Query: 242 AKHLSDPFANNLLTVISGNA 261
A HLSDP + S ++
Sbjct: 271 ATHLSDPLHTTIFDTFSSSS 290
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 102/215 (47%), Gaps = 37/215 (17%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 111
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 60 PDRPLWFPG-----STPPPWLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 114
Query: 112 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG 171
AAG IPE K G P W+ G L +T F I E+ +G
Sbjct: 115 AAGIFIPEFLTKIGVLNTPS--WYSAGELEYFTDTTTLF------------IVELFFIGW 160
Query: 172 AEYYRI----------------TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 213
AE R N L D +PGG FDPLG P + L+ KEI
Sbjct: 161 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEI 220
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
KNGRLAM A++G + Q T GP++NL HL+DP
Sbjct: 221 KNGRLAMLAVMGAWFQHIYTATGPIDNLFAHLADP 255
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 109/203 (53%), Gaps = 28/203 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P+YLTG + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 65 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKLGIIN 124
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
PE W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 125 VPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 173
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+
Sbjct: 174 FKQYSLPKGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFVVQHNVTGK 229
Query: 236 GPVENLAKHLSDPFANNLLTVIS 258
GP ENL +HLSDP+ N ++ +S
Sbjct: 230 GPFENLLQHLSDPWHNTIVQTLS 252
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 120/257 (46%), Gaps = 61/257 (23%)
Query: 50 SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 92
S DR ++ P + P+YL G + GDYG+DPFGL K +
Sbjct: 47 STSDRPLWFPGAV-----APDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKND 101
Query: 93 --------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+++ ELIH RWAML G + E
Sbjct: 102 AGDIIGTRFEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG--- 158
Query: 127 NCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLED 185
W G + L+DG++ Y G+ +P ++ + E++L+G E+ R LD E
Sbjct: 159 -----VTWQDAGKVELVDGSS--YLGQPLPFSMTTLIWIEVLLIGYIEFQRNAE-LDSEK 210
Query: 186 KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 244
+L+PGG FDPLGLA DP++ L++ EIK+ RLAM LGF +QA TG+GP+ N A H
Sbjct: 211 RLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATH 270
Query: 245 LSDPFANNLLTVISGNA 261
LSDP + S ++
Sbjct: 271 LSDPLHTTIFDTFSSSS 287
>gi|115790|sp|P15192.1|CB22_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 2;
AltName: Full=Chlorophyll a-b binding protein type II 2;
Short=CAB; AltName: Full=LHCP
gi|169376|gb|AAA33776.1| chlorophyll a/b-binding protein [Pinus sylvestris]
Length = 150
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 89/135 (65%), Gaps = 10/135 (7%)
Query: 123 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITN 179
KFG EAVWFK GA + L+Y G I + A+ A ++VL+G E YR+
Sbjct: 9 KFG-----EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGG 63
Query: 180 GLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237
G E D L+PG FDPLGLA DP+ A LKVKEIKNGRLAMF+M GFF+QA VTG+GP
Sbjct: 64 GPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 123
Query: 238 VENLAKHLSDPFANN 252
+ENL HL+DP ANN
Sbjct: 124 IENLYDHLADPVANN 138
>gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 126/270 (46%), Gaps = 61/270 (22%)
Query: 37 SPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD---- 92
S + P S DR ++ P ++ PE+L G + GDYG+DPFGL K +
Sbjct: 37 SKKKAAPKKVSKGPSTDRPLWYP-----GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQF 91
Query: 93 ---------------------------------------DFSKYQAYELIHARWAMLGAA 113
+++ ELIH RWAML
Sbjct: 92 ELDSLDQNLAKNEAGIIIGTRTEVADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATL 151
Query: 114 GFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 172
G + E W G + L++G++ Y G+ +P ++ + E++++G
Sbjct: 152 GALSVEWLTG--------VTWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYI 201
Query: 173 EYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 231
E+ R LD E +L+PGG FDPLGLA DP++ A L++ EIK+ RLAM LGF +QA
Sbjct: 202 EFQRNAE-LDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAA 260
Query: 232 VTGEGPVENLAKHLSDPFANNLLTVISGNA 261
TG+GP+ N A HLSDP ++ S ++
Sbjct: 261 ATGKGPLNNWATHLSDPLHTTIIDTFSSSS 290
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 113/231 (48%), Gaps = 31/231 (13%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T P GPDR ++ P + P +L G +PGD+G+DP G +P+ + EL+H
Sbjct: 59 TVCEPLGPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMH 113
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
RWAML AG +IPE K+G E W+ G YF P L +A
Sbjct: 114 GRWAMLAVAGILIPEILQKWGFM--EEFSWYTAG-------EREYFAD--PWTLFVTQMA 162
Query: 165 EIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLK 209
+ V G + N +D+E + +PGG FD + P+ +L+
Sbjct: 163 LMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLR 222
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
KEIKNGRLAM A +GF+ Q TG+GP++NL HL+DP N+ + + +
Sbjct: 223 TKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTSH 273
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 109/205 (53%), Gaps = 28/205 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 62 PAYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 121
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 122 VPK--WY-------DAGKEEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 170
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 171 FKQYSLPPNEVGYPGGIFNPLNFAPTLEA----KEKELANGRLAMLAFLGFVIQHNVTGK 226
Query: 236 GPVENLAKHLSDPFANNLLTVISGN 260
GP +NL +HLSDP+ N ++ SGN
Sbjct: 227 GPFDNLLQHLSDPWHNTIIQTFSGN 251
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 121/253 (47%), Gaps = 61/253 (24%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 92
DR ++ P + P++L G + GDYG+DPFGL K +
Sbjct: 54 DRPVWYPGAI-----SPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGD 108
Query: 93 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 129
+++ ELIH RWAML G + E
Sbjct: 109 VIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG------ 162
Query: 130 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLH 188
W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD E +L+
Sbjct: 163 --VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLY 217
Query: 189 PGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 247
PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSD
Sbjct: 218 PGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSD 277
Query: 248 PFANNLLTVISGN 260
P ++ S +
Sbjct: 278 PLHTTIIDTFSSS 290
>gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length = 285
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 119/248 (47%), Gaps = 60/248 (24%)
Query: 52 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------- 92
PDR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 46 PDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAG 100
Query: 93 ------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
+++ ELIH RWAML G + E
Sbjct: 101 DVIGTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI---- 156
Query: 129 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKL 187
W G + L++G++ Y G+ +P ++ + E++++G ++ LD E +L
Sbjct: 157 ----TWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIVEFQRNAELDPEKRL 210
Query: 188 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 246
+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLS
Sbjct: 211 YPGGSFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 270
Query: 247 DPFANNLL 254
DP +
Sbjct: 271 DPLHTTIF 278
>gi|225440674|ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
[Vitis vinifera]
gi|147784938|emb|CAN77492.1| hypothetical protein VITISV_010727 [Vitis vinifera]
Length = 288
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 121/247 (48%), Gaps = 61/247 (24%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 92
DR ++ P + PE+L G + GDYG+DPFGL K +
Sbjct: 52 DRPLWFPGAV-----APEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGD 106
Query: 93 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 129
+++ ELIH RWAML G + E+
Sbjct: 107 VIGTRFEGGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALAVESLTG------ 160
Query: 130 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLH 188
W G + L++G++ Y G+ +P ++ + E++++G E+ R LD E +L+
Sbjct: 161 --VTWQDAGKVELIEGSS--YLGQPLPFSMTTLIWIEVLVIGYIEFQRNAE-LDPEKRLY 215
Query: 189 PGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 247
PGG F DPLGLA DP++ A+L++ EIK+ RLAM LGF +QA VTG+GP+ N A HLSD
Sbjct: 216 PGGKFFDPLGLAADPEKKAVLQLAEIKHARLAMIGFLGFAVQAAVTGKGPLNNWATHLSD 275
Query: 248 PFANNLL 254
P ++
Sbjct: 276 PLHTTII 282
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 115/237 (48%), Gaps = 56/237 (23%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 92
P++L G + GDYG+DPFGL K +
Sbjct: 65 PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 124
Query: 93 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 144
+++ ELIH RWAML G + E W G + L+DG
Sbjct: 125 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDG 176
Query: 145 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPD 203
++ Y G+ +P ++ + E++++G E+ R LD E +L+PGG F DPLGLA DP+
Sbjct: 177 SS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPE 233
Query: 204 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 234 KTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 99/198 (50%), Gaps = 32/198 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G +P D+G+DP GL P+ EL+H RWAMLGAAG IPE K G
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILN 142
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------- 177
P W+ G L YF + +V E++ +G AE R
Sbjct: 143 TPS--WYTAG-------ELEYFTDKTTLFVV-----EMIFLGWAEGRRWADIIKPGSVNT 188
Query: 178 -----TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
N L D +PGG FDPLG P++ L+ KEIKNGRLAM A++G + QA
Sbjct: 189 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQA 248
Query: 231 YVTGEGPVENLAKHLSDP 248
TG GP++NL HL+DP
Sbjct: 249 EYTGTGPIDNLLAHLADP 266
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 113/231 (48%), Gaps = 31/231 (13%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T P GPDR ++ P + P +L G +PGD+G+DP G +P+ + EL+H
Sbjct: 56 TVCEPLGPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMH 110
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
RWAML AG +IPE K+G E W+ G YF P L +A
Sbjct: 111 GRWAMLAVAGILIPEILQKWGFM--EEFSWYTAG-------EREYFAD--PWTLFVTQMA 159
Query: 165 EIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLK 209
+ V G + N +D+E + +PGG FD + P+ +L+
Sbjct: 160 LMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLR 219
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
KEIKNGRLAM A +GF+ Q TG+GP++NL HL+DP N+ + + +
Sbjct: 220 TKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTSH 270
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 102/205 (49%), Gaps = 30/205 (14%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
+ +P YL G +PGD+G+DP L +P Y EL+HAR+AML AG ++PE G
Sbjct: 65 ATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
Query: 126 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL---- 181
+ W G D YF P + +F V +++L AE R + +
Sbjct: 125 FS------WPGAGVAWYDAGKFQYFA---PASSLFGV--QMLLFAWAELRRYQDFVKPGS 173
Query: 182 -------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
D + +PGG FDP G +K LK KEIKNGRLAM A GF
Sbjct: 174 ANQDPIFSNNKLPDGNEPGYPGGIFDPFGWSK--GDMKSLKTKEIKNGRLAMLAFAGFAA 231
Query: 229 QAYVTGEGPVENLAKHLSDPFANNL 253
QAY TG P++NLA HL+DP+A +
Sbjct: 232 QAYTTGTTPLKNLATHLADPWATTV 256
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 109/223 (48%), Gaps = 38/223 (17%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 112
DR ++ P S+ PE+L G +PGD+G+DP GL P+ + EL+H RWAMLGA
Sbjct: 1 DRPLWFPG-----SKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGA 55
Query: 113 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGA 172
AG IPEA K G P W G YF P L + E++L A
Sbjct: 56 AGIFIPEALTKAGILNTPS--WNVAG-------DQQYFAD--PTTL---FVIELILFAWA 101
Query: 173 EYYRI----------------TNGLDLEDKLHPGG-PFDPLGLA--KDPDQFALLKVKEI 213
E R N L D +PGG FDPLG KD + L+ KEI
Sbjct: 102 EGRRWADIVNPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEI 161
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 256
KNGRLAM A+LG +QA T GP++NL HL+DP N + +
Sbjct: 162 KNGRLAMLAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIFAL 204
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 115/226 (50%), Gaps = 46/226 (20%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 112
DR+++ P G++ PEYL G++ GDYG+DP GL P Y+ EL HARWAMLG
Sbjct: 31 DRKLWAP-GVV----APEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 85
Query: 113 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIV 167
AG ++ E P+ +++ G +N+P IN+ + E +
Sbjct: 86 AGVLVQEIVK-------PDVYFYEAG-----------LPQNLPEPFTNINMGGLLAWEFI 127
Query: 168 LVGGAEYYRITN----GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVK 211
L+ E R + G ED + +PGG FDP G +K L+ K
Sbjct: 128 LMHWVEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSK--GNLKELQTK 185
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
EIKNGRLAM A + F LQA TG+GP+ L+ HLS+PF NN+L I
Sbjct: 186 EIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNI 231
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 104/197 (52%), Gaps = 23/197 (11%)
Query: 62 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 121
LL + P+YL G + GDYG+DP GL P+ YQ EL++ARWAM+ AG EA
Sbjct: 49 LLPNIKTPDYLDGTIAGDYGFDPLGLGSDPERLKYYQEAELMNARWAMMAVAGICTTEAL 108
Query: 122 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL 181
G ++ W+ G +Y PIN AV+ +G E RIT L
Sbjct: 109 -------GIQSKWYMAG-------QEDY---GFPINAQLAVL--FPTMGFLETKRITGWL 149
Query: 182 DL-EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 240
+ ++ PFDPLG+ D D +K+KEIKNGR AM A +G +QA V EGP+
Sbjct: 150 ATGKSGINETFPFDPLGMGADSDS---MKLKEIKNGRAAMIAFVGICVQALVLREGPLAA 206
Query: 241 LAKHLSDPFANNLLTVI 257
L H+++PF NNL T +
Sbjct: 207 LQDHVANPFGNNLATNV 223
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 100/198 (50%), Gaps = 32/198 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G +P D+G+DP GL +P+ + E++H+RWAMLGAAG IPEA K G
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGILN 132
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT---------- 178
P W+ G YF + I E++L+G AE R
Sbjct: 133 TP--FWYTAG-------EQEYFTDQTTL-----FIVEMILLGWAEGRRWADILKPGSVNT 178
Query: 179 ------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
N L D +PGG FDP G P++ L+ KEIKNGRLAM A++G + QA
Sbjct: 179 DPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAWFQA 238
Query: 231 YVTGEGPVENLAKHLSDP 248
TG P++NL HL+DP
Sbjct: 239 VYTGARPIDNLLAHLADP 256
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 110/203 (54%), Gaps = 28/203 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P+YLTG + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
PE W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 124 VPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 172
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A P Q A K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 173 FKQYSLPKGEVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVTGK 228
Query: 236 GPVENLAKHLSDPFANNLLTVIS 258
GP ENL +HLSDP+ N ++ +
Sbjct: 229 GPFENLLQHLSDPWHNTIVQTFN 251
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 104/206 (50%), Gaps = 30/206 (14%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125
S P +L G +P DYG+DP L P++ + EL+H RWAMLG AG + PE K G
Sbjct: 49 SPAPAHLDGTLPCDYGFDPLNLGADPENLKWFVQAELMHCRWAMLGLAGMVGPELLTKIG 108
Query: 126 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL 181
P W G DG Y+ P+ V ++ ++ AE R + G
Sbjct: 109 MADLPN--WIDAGKW--DG----YWLGAGPLFFV-----QMAMMNWAEVRRWQDMKAPGT 155
Query: 182 DLEDKL-------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
ED L +P G FDP+G AKDP + LK KEI NGRLAM A++G F
Sbjct: 156 MNEDPLTGANKGDTNTDVGYPKGLFDPMGYAKDPKKAEELKRKEIANGRLAMVAIVGCFA 215
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLL 254
QA TG GPV+NL HL+DP NN+
Sbjct: 216 QAISTGTGPVDNLFTHLADPGHNNIF 241
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 100/198 (50%), Gaps = 32/198 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G +P D+G+DP GL +P+ + E++H+RWAMLGAAG IPEA K G
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGILN 132
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT---------- 178
P W+ G YF + I E++L+G AE R
Sbjct: 133 TP--FWYTAG-------EQEYFTDQTTL-----FIVEMILLGWAEGRRWADILKPGSVNT 178
Query: 179 ------NGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
N L D +PGG FDP G P++ L+ KEIKNGRLAM A++G + QA
Sbjct: 179 DPVFPNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAWFQA 238
Query: 231 YVTGEGPVENLAKHLSDP 248
TG P++NL HL+DP
Sbjct: 239 VYTGARPIDNLLAHLADP 256
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 28/205 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ G YF + + ++ +++ V + + I N G +D +
Sbjct: 123 VPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPAGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGK 227
Query: 236 GPVENLAKHLSDPFANNLLTVISGN 260
GP +NL +H+SDP+ N ++ + GN
Sbjct: 228 GPFDNLLQHISDPWHNTIVQTLGGN 252
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F G
Sbjct: 61 PAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 120
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 121 VPK--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 169
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 170 FKNYSLPPNECGYPGGIFNPLNFAATEEA----KEKELANGRLAMLAFLGFIVQHNVTGK 225
Query: 236 GPVENLAKHLSDPFANNLLTVISGN 260
GP +NL +HLSDP+ N ++ +S N
Sbjct: 226 GPFDNLLQHLSDPWHNTIIQTLSSN 250
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 114/212 (53%), Gaps = 34/212 (16%)
Query: 71 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 125
YL G +PGD+G+DP GL + K+ Y E+IHARWAMLGAAG I PE
Sbjct: 56 YLDGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLG--A 113
Query: 126 ANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
A P+A WF++G + G+ Y+ P + F EIV + AE R+ +
Sbjct: 114 AGLIPDATNIKWFESGVIPPAGSYNGYWAD--PYTIFFV---EIVAMQFAELRRLQDFRY 168
Query: 181 ---------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L LE D +PGGPF + L K LK+KEIKNGRLAM AM
Sbjct: 169 PGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAM 228
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
LG+ QA +TG+GP +NL +HL+DP NN+LT
Sbjct: 229 LGYGAQAVMTGKGPFQNLVEHLADPVNNNILT 260
>gi|224928|prf||1204205C protein 1C,chlorophyll binding
Length = 165
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 63 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 122
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 123 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 153
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 104/207 (50%), Gaps = 34/207 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ PD Y EL++ RWAMLG AG +IPE FG
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 184
P+ W+ D + YF + + + E +L E R + G +
Sbjct: 122 VPK--WY-------DAGKVEYFASSSTL-----FVIEFILFHYVELRRWQDIKYPGSVNQ 167
Query: 185 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
D + +PGG F+PL + + K KE+ NGRLAM A LGF +Q V
Sbjct: 168 DPVFKNYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNV 223
Query: 233 TGEGPVENLAKHLSDPFANNLLTVISG 259
TG+GP ENL +HLSDP+ N ++ G
Sbjct: 224 TGKGPFENLLQHLSDPWHNTIIQTFQG 250
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 28/205 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIIN 122
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 VPK--WY-------DAGKEEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPKGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGK 227
Query: 236 GPVENLAKHLSDPFANNLLTVISGN 260
GP +NL +HLSDP+ N ++ +SG+
Sbjct: 228 GPFDNLLQHLSDPWHNTIVQTLSGS 252
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 112/213 (52%), Gaps = 34/213 (15%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G + GD+G+DP GL + P Y EL+H R+AMLG +G ++ + G +
Sbjct: 60 PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 119
Query: 129 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-------- 179
P VW+ GA+ N F I +++L+G E R +
Sbjct: 120 LP--VWYNAGAVEYGFANKRTLF------------IVQLLLMGFVETKRYMDFKSPGSQA 165
Query: 180 ------GLDLEDK----LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
GL+ K +PGGP +PLG+AKD K+KEIKNGRLAM AMLG F+
Sbjct: 166 QEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFV 225
Query: 229 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 261
QAYVT GP++NL +HLS+P+ ++ +S ++
Sbjct: 226 QAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSSS 258
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 108/203 (53%), Gaps = 28/203 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P+YL G +PGD G+DP GL++ P++ + EL + RWAMLG AG ++PE F K G
Sbjct: 62 PDYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGMLLPEVFTKIGIIN 121
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 122 APQ--WY-------DAGKQEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 170
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A + K KEI NGRLAM A LGF +Q +TG+
Sbjct: 171 FKSYRLPPNEVGYPGGIFNPLNFAPSLEA----KEKEIANGRLAMLAFLGFLIQHNLTGK 226
Query: 236 GPVENLAKHLSDPFANNLLTVIS 258
GP +NL +HLSDP+ N ++ +S
Sbjct: 227 GPFDNLLQHLSDPWHNTIIQTLS 249
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 112/231 (48%), Gaps = 31/231 (13%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T P GPDR ++ P + P +L G +PGD+G+DP G +P+ + EL+H
Sbjct: 59 TVCEPLGPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWFAQAELMH 113
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
RWAML AG +IPE K+G E W+ G YF P L +A
Sbjct: 114 GRWAMLAVAGILIPEILQKWGFM--EEFSWYTAG-------EREYFAD--PWTLFVTQMA 162
Query: 165 EIVLVGGAEYYRITN--GLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLK 209
+ V G + N +D+E + +PGG FD + P+ +L+
Sbjct: 163 LMGWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLR 222
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
KEIKNGRLAM A +GF+ Q TG+GP+ NL HL+DP N+ + + +
Sbjct: 223 TKEIKNGRLAMLAFVGFWFQVVYTGQGPLGNLFAHLADPGHCNIFSAFTSH 273
>gi|82074|pir||A24039 chlorophyll a/b-binding protein 1A precursor - tomato (fragments)
gi|224926|prf||1204205A protein 1A,chlorophyll binding
Length = 165
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 63 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 122
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 123 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 153
>gi|115821|sp|P14275.1|CB2C_SOLLC RecName: Full=Chlorophyll a-b binding protein 1C, chloroplastic;
AltName: Full=LHCII type I CAB-1C; Short=LHCP; Flags:
Precursor
Length = 265
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 163 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 222
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 98/202 (48%), Gaps = 29/202 (14%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G +PGDYG+DP L + D Y EL HARWAMLG AG PE FG +
Sbjct: 46 PSHLKGMLPGDYGFDPLNLGEDSKDLDWYVQAELQHARWAMLGVAGMAAPELLTMFGVSD 105
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIT---------- 178
P W A +G YF + + V ++ ++ AE R
Sbjct: 106 LPN--WHD--APFYNG----YFASSTTLFTV-----QMFMMNWAEIRRWQDIKNPGSVSE 152
Query: 179 ------NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
N L D +PGG F+P+ K D+ LK KEI NGRLAM A LG F+Q
Sbjct: 153 DPAFPGNKLPAGDVGYPGGIFNPMNYGKSTDELKALKAKEIANGRLAMVAALGCFIQYDH 212
Query: 233 TGEGPVENLAKHLSDPFANNLL 254
TG GPVENL HLS+P NN+
Sbjct: 213 TGVGPVENLTSHLSNPGVNNVF 234
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 117/256 (45%), Gaps = 59/256 (23%)
Query: 50 SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 92
S DR ++ P + PEYL G + GDYG+DP GL K +
Sbjct: 47 STSDRPLWFPGAV-----APEYLDGSLVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNV 101
Query: 93 --------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+++ ELIH RWAML G + E
Sbjct: 102 AGDIIGTRFEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG--- 158
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 186
W G + L+ N +Y G+ +P ++ + E++L+G E+ R LD E +
Sbjct: 159 -----VTWQDAGKVELE-NGSSYLGQPLPFSMTTLIWIEVLLIGYIEFQRNAE-LDPEKR 211
Query: 187 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 245
L+PGG FDPLGLA DP++ L++ EIK+ RLAM LGF +QA TG+GP+ N A HL
Sbjct: 212 LYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHL 271
Query: 246 SDPFANNLLTVISGNA 261
SDP + S ++
Sbjct: 272 SDPLHTTIFDTFSSSS 287
>gi|115824|sp|P14277.1|CB2F_SOLLC RecName: Full=Chlorophyll a-b binding protein 3B, chloroplastic;
AltName: Full=LHCII type I CAB-3B; Short=LHCP; Flags:
Precursor
Length = 267
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 165 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 224
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 225 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
>gi|82077|pir||F24039 chlorophyll a/b-binding protein 3B precursor - tomato (fragments)
gi|224931|prf||1204205F protein 3B,chlorophyll binding
Length = 167
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 65 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 124
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 125 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 155
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 105/207 (50%), Gaps = 34/207 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G++PGD G+DP GL++ P++ Y EL++ RWAMLG AG + PE K G
Sbjct: 56 PAYLDGKLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGLIN 115
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 184
PE W+ D YF + + + E +L E R + G +
Sbjct: 116 APE--WY-------DAGKSTYFASSSTL-----FVVEFILFHYVEIRRWQDIKEPGCVNQ 161
Query: 185 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
D + +PG F+PL A + K KEI NGRLAM A LGF +Q V
Sbjct: 162 DPIFKSYSLPPHECGYPGSVFNPLNFAPTLEA----KEKEIANGRLAMLAYLGFSVQHAV 217
Query: 233 TGEGPVENLAKHLSDPFANNLLTVISG 259
TG+GP++NL +HLSDP+ N ++ SG
Sbjct: 218 TGKGPLDNLFQHLSDPWHNTIIQTFSG 244
>gi|168812218|gb|ACA30285.1| putative chlorophyll A-B binding protein type I [Cupressus
sempervirens]
Length = 134
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 132 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DK 186
AVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G E D
Sbjct: 1 AVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP 60
Query: 187 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 246
L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAM +M GFF+QA VTG+GP+ENL HL+
Sbjct: 61 LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIVTGKGPIENLYDHLA 120
Query: 247 DPFANN 252
DP NN
Sbjct: 121 DPSTNN 126
>gi|115823|sp|P14276.1|CB2E_SOLLC RecName: Full=Chlorophyll a-b binding protein 3A, chloroplastic;
AltName: Full=LHCII type I CAB-3A; Short=LHCP; Flags:
Precursor
Length = 267
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 165 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 224
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 225 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
>gi|82076|pir||E24039 chlorophyll a/b-binding protein 3A precursor - tomato (fragments)
gi|224930|prf||1204205E protein 3A,chlorophyll binding
Length = 167
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 65 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 124
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 125 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 155
>gi|167997433|ref|XP_001751423.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697404|gb|EDQ83740.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 244
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 70/89 (78%), Gaps = 2/89 (2%)
Query: 166 IVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
+VL+G E YR+ G ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 144 VVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 203
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANN 252
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 204 FGFFVQAIVTGKGPLENLNDHLADPVANN 232
>gi|384248209|gb|EIE21694.1| hypothetical protein COCSUDRAFT_67011 [Coccomyxa subellipsoidea
C-169]
Length = 316
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 121/258 (46%), Gaps = 64/258 (24%)
Query: 46 KSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF----------- 94
K SG ++LP +E P +L G +PGD G+DP GLS P D+
Sbjct: 70 KRKGSGGGDALWLPN-----TERPAWLDGSLPGDRGFDPLGLSS-PQDYLQVGIDQLDQN 123
Query: 95 ----------------------------------SKYQAYELIHARWAMLGAAGFIIPEA 120
+++ ELIH RWAMLGA G ++ EA
Sbjct: 124 KAVNKAGAIVGKFAAPKTKISDTALQPYDEVFGLQRFRETELIHGRWAMLGALGVLVAEA 183
Query: 121 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 180
W G + LDG Y G ++P ++ V E +LVGGAE YR
Sbjct: 184 STGVS--------WVDAGKVELDGA--QYLGFSLPFSISQLVWIEAILVGGAEIYR-NRE 232
Query: 181 LDLEDKLHPGGPFDPLGLAKDPDQFAL-LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 239
L+ + +++PGG FDPLGLA D A LK E+K+GRLAM A LGF +QA TG+G +
Sbjct: 233 LEPQARIYPGGYFDPLGLATGDDARAFKLKEAELKHGRLAMIAFLGFGVQALATGQGALG 292
Query: 240 NLAKHLSDPFANNLLTVI 257
+LAK S FA L+ I
Sbjct: 293 SLAKFASS-FAPELVEDI 309
>gi|115816|sp|P14274.1|CB2A_SOLLC RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type I CAB-1A; Short=LHCP; Flags:
Precursor
Length = 265
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 163 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 222
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 106/199 (53%), Gaps = 30/199 (15%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G +P DYG+DP L PD + + EL+H RWAM+G AG ++P K GA
Sbjct: 9 PAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALLTKLGAMN 68
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR------------ 176
P VWF+ G + D ++ +P + + V E + +G E R
Sbjct: 69 VP--VWFEAGKVANDNSS-------VPFSALLMV--EFLAMGFVETKRWYDIKSPGSQGD 117
Query: 177 -----ITNGLDLEDKLHPGGP-FDPLGLAKDPDQ-FALLKVKEIKNGRLAMFAMLGFFLQ 229
IT+ + +PGG FDP G +K ++ + L+VKEI NGRLAM AM+GF+ Q
Sbjct: 118 GSIFGITDDFKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRLAMVAMVGFWAQ 177
Query: 230 AYVTGEGPVENLAKHLSDP 248
TG+GPV+NL H++DP
Sbjct: 178 YAATGKGPVDNLFDHIADP 196
>gi|193875802|gb|ACF24537.1| light harvesting complex protein LHCII-2 [Gymnochlora stellata]
Length = 248
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +LP+ L + +P+YLTGE PGDYG+D GLS P +F+ Y+ EL+HARWAML
Sbjct: 122 GPDRPKWLPDAFL--AGVPDYLTGEYPGDYGWDALGLSADPQNFANYREAELLHARWAML 179
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVI-AEIV 167
GA G + PE N + E VW+K GAL+L+G +++Y G K I + + A+ A++V
Sbjct: 180 GALGCVFPEVINSYYNGNIAEPVWWKAGALVLNGQSIDYLGSDKFIHASSIIAIAGAQVV 239
Query: 168 LVGGAE 173
L+GGAE
Sbjct: 240 LMGGAE 245
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 114/212 (53%), Gaps = 34/212 (16%)
Query: 71 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 125
YL G +PGD+G+DP GL + K+ Y E+IHARWAMLGAAG I PE
Sbjct: 43 YLDGTLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLG--A 100
Query: 126 ANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
A P+A WF++G + G+ Y+ P + F EIV + AE R+ +
Sbjct: 101 AGLIPDATNIKWFESGVIPPAGSYDGYWAD--PYTIFFV---EIVAMQFAELRRLQDFRY 155
Query: 181 ---------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L LE D +PGGPF + L K LK+KEIKNGRLAM AM
Sbjct: 156 PGSMGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAM 215
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
LG+ QA +TG+GP +NL +HL+DP NN+LT
Sbjct: 216 LGYGAQAVLTGKGPFQNLVEHLADPVNNNILT 247
>gi|13877547|gb|AAK43851.1|AF370474_1 chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|23198310|gb|AAN15682.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 114/237 (48%), Gaps = 56/237 (23%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 92
P++L G + GDYG+DPFGL K +
Sbjct: 65 PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 124
Query: 93 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 144
+++ ELIH RWAML G + E W G + L+DG
Sbjct: 125 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDG 176
Query: 145 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPD 203
++ Y G+ +P ++ + E++++G E+ R LD E +L+PGG F DPL LA DP+
Sbjct: 177 SS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLSLAADPE 233
Query: 204 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 234 KTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
>gi|226358411|gb|ACO51068.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 285
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 114/235 (48%), Gaps = 56/235 (23%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 92
P++L G + GDYG+DPFGL K +
Sbjct: 61 PDWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNMAGEIIGTRTEVADVKATPF 120
Query: 93 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 144
+++ ELIH RWAML G + E W G + L++G
Sbjct: 121 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVELVEG 172
Query: 145 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPD 203
++ Y G+ +P ++ + E++++G E+ R LD E +L+PGG FDPLGLA DP+
Sbjct: 173 SS--YLGQPLPFSMTTLIWIEVLVIGFIEFQRNAE-LDPEKRLYPGGKYFDPLGLAADPE 229
Query: 204 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
+ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ +
Sbjct: 230 KKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFT 284
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 98/198 (49%), Gaps = 32/198 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G +P D+G+DP GL P+ EL+H RWAMLGAAG IPE K G
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILN 142
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI----------- 177
P W+ G YF + +V E++ +G AE R
Sbjct: 143 TPS--WYTAG-------EQEYFTDKTTLFVV-----EMIFLGWAEGRRWADIIKPGSVNT 188
Query: 178 -----TNGLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230
N L D +PGG FDPLG P++ L+ KEIKNGRLAM A++G + QA
Sbjct: 189 DPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQA 248
Query: 231 YVTGEGPVENLAKHLSDP 248
TG GP++NL HL+DP
Sbjct: 249 EYTGTGPIDNLLAHLADP 266
>gi|159138421|gb|ABW89213.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138423|gb|ABW89214.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138425|gb|ABW89215.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138429|gb|ABW89217.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138433|gb|ABW89219.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138437|gb|ABW89221.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138439|gb|ABW89222.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138441|gb|ABW89223.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138443|gb|ABW89224.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138445|gb|ABW89225.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138447|gb|ABW89226.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138451|gb|ABW89228.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138453|gb|ABW89229.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138455|gb|ABW89230.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138457|gb|ABW89231.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 72/90 (80%), Gaps = 2/90 (2%)
Query: 165 EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
+++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 15 QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFS 74
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
M GFF+QA VTG+GP+ENLA HL+DP ANN
Sbjct: 75 MFGFFVQAIVTGKGPLENLADHLADPVANN 104
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 108/204 (52%), Gaps = 28/204 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ Y EL++ARWAMLG AG ++PE K G
Sbjct: 56 PAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGMLLPEVLTKIGIIN 115
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P +W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 116 AP--LWY-------DAGKSTYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 164
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PG F+PL +P A K KE+ NGRLAM A L F +Q +TG+
Sbjct: 165 FKNYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLAFMVQHGITGK 220
Query: 236 GPVENLAKHLSDPFANNLLTVISG 259
GP ENL +HLSDP+ N ++ +SG
Sbjct: 221 GPFENLLQHLSDPWHNTIIQTLSG 244
>gi|159138427|gb|ABW89216.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138431|gb|ABW89218.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138435|gb|ABW89220.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 72/90 (80%), Gaps = 2/90 (2%)
Query: 165 EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
+++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 15 QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFS 74
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
M GFF+QA VTG+GP+ENLA HL+DP ANN
Sbjct: 75 MFGFFVQAIVTGKGPLENLADHLADPVANN 104
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 140/289 (48%), Gaps = 43/289 (14%)
Query: 2 SAVLLGLQLQVHQTLLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEG 61
+ L GL + ++L + + ++PP +P+ ++S + DR +
Sbjct: 8 TQALQGLTTKAPKSLRRQVVVRAEGEQQPP-------APAAEAKQTSVAKVDRSKDVLYV 60
Query: 62 LLDRSEIPEYLTGEVPGDYGYDPFGL-------SKKPDDFSK---YQAYELIHARWAMLG 111
D + + +YL G +PGDYG+DP GL + F Q E+IHARWAMLG
Sbjct: 61 GSDAAAL-KYLDGTLPGDYGFDPLGLLDPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLG 119
Query: 112 AAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG 170
AAG I PE K G AV WF+TG + G +++ P L F E+V +
Sbjct: 120 AAGCIAPEILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWAD--PFTLFFI---EVVAIQ 174
Query: 171 GAEYYRITN-------------GLD-----LEDKLHPGGPF-DPLGLAKDPDQFALLKVK 211
AE R+ + GL+ ++ +PGGPF + K + LK+
Sbjct: 175 FAELKRLQDYKNPGSQSRQYFLGLEGLFKGSDNPAYPGGPFFNFANFGKTEAEMKKLKLN 234
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
EIKNGRLAM AM G+ QA +TG+GP +NL HL+DP NL+T + G
Sbjct: 235 EIKNGRLAMLAMFGYGAQAVITGDGPFDNLLAHLADPTGANLITNLGGK 283
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 104/216 (48%), Gaps = 39/216 (18%)
Query: 66 SEIPEYLTGEVPGDYGYDPFGL------SKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
S+ PE+L G +PGD+G+DP GL P+ + EL+H RWAMLGAAG IPE
Sbjct: 71 SQAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKWFVQAELVHCRWAMLGAAGIFIPE 130
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRI-- 177
A K G P W G +YF + ++ E++L AE R
Sbjct: 131 ALTKMGILNTPS--WTVAG-------DADYFTDKTTLFVI-----ELILFAWAEGRRWAD 176
Query: 178 --------------TNGLDLEDKLHPGG-PFDPLGLAKDPDQFAL--LKVKEIKNGRLAM 220
N L D +PGG FDPLG + D L L+ +EIKNGRLAM
Sbjct: 177 IVNPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTSDAAKLKDLRTREIKNGRLAM 236
Query: 221 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 256
A+LG +QA T GP++NL HL DP N + +
Sbjct: 237 LAVLGAIVQANYTHTGPIDNLVAHLVDPGHNTIFAL 272
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 108/230 (46%), Gaps = 31/230 (13%)
Query: 41 SPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 100
+P TK S R + P++L GE+PGDYG+DP L K+P D Y
Sbjct: 15 APKTTKRSQRSVSVRASTQPMWFPGMDAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQA 74
Query: 101 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 160
EL H RWAMLG AG PE K G + P W + NY G +F
Sbjct: 75 ELQHGRWAMLGVAGAAAPEILTKMGISDLPN--WH---------DAPNYQGYFTDATTLF 123
Query: 161 AVIAEIVLVGGAEYYRITN----GLDLED------KL------HPGGPFDPLGLAKDPDQ 204
V +++++ AE R + G ED KL +PGG FDPLG AK
Sbjct: 124 WV--QMLMMNWAEVRRWQDMRKPGSVNEDPAFSGNKLPSGIVGYPGGIFDPLGYAK--GD 179
Query: 205 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 254
LK KEI NGRLAM A G +Q TG GPV NL H+SDP NN+
Sbjct: 180 LNKLKAKEIANGRLAMVAFAGIMVQYDHTGVGPVANLVAHMSDPAHNNVF 229
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 117/235 (49%), Gaps = 31/235 (13%)
Query: 41 SPPLTKSSPSGPDRRIFLPEG---LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 97
S L +++ + P RR E L P YL G +PGD G+DP GL++ P++ Y
Sbjct: 25 SSRLGRTATASPTRRSLKAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWY 84
Query: 98 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 157
EL++ RWAMLG AG +IPE K G P+ W+ D YF + +
Sbjct: 85 VQAELVNGRWAMLGVAGMLIPEVLTKAGLINAPQ--WY-------DAGKSEYFASSSTLF 135
Query: 158 LVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQ 204
++ ++ V + + I N G +D + +PG F+PL A +
Sbjct: 136 VIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPTLEA 193
Query: 205 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 259
K KE+ NGRLAM A L F +Q VTG+GP +NL +HLSDP+ N ++ +SG
Sbjct: 194 ----KEKELANGRLAMLAFLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 117/235 (49%), Gaps = 31/235 (13%)
Query: 41 SPPLTKSSPSGPDRRIFLPEG---LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 97
S L +++ + P RR E L P YL G +PGD G+DP GL++ P++ Y
Sbjct: 33 SSRLGRTATASPTRRSLKAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWY 92
Query: 98 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 157
EL++ RWAMLG AG +IPE K G P+ W+ D YF + +
Sbjct: 93 VQAELVNGRWAMLGVAGMLIPEVLTKAGLINAPQ--WY-------DAGKSEYFASSSTLF 143
Query: 158 LVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQ 204
++ ++ V + + I N G +D + +PG F+PL A +
Sbjct: 144 VIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGSVFNPLNFAPTLEA 201
Query: 205 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 259
K KE+ NGRLAM A L F +Q VTG+GP +NL +HLSDP+ N ++ +SG
Sbjct: 202 ----KEKELANGRLAMLAFLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTLSG 252
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 104/207 (50%), Gaps = 34/207 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE FG
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 184
P+ W+ D + YF + + + E +L E R + G +
Sbjct: 122 VPK--WY-------DAGKVEYFASSSTL-----FVIEFILFHYVELRRWQDIKYPGSVNQ 167
Query: 185 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
D + +PGG F+PL + + K KE+ NGRLAM A LGF +Q V
Sbjct: 168 DPVFKNYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNV 223
Query: 233 TGEGPVENLAKHLSDPFANNLLTVISG 259
TG+GP ENL +HLSDP+ N ++ G
Sbjct: 224 TGKGPFENLLQHLSDPWHNTIIQTFQG 250
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 113/216 (52%), Gaps = 40/216 (18%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 104
T+ S +R ++ P + P++LTGE PGD G+DP GLSK P F + + E+ H
Sbjct: 148 TRGSAPEEERLVWFPN-----ATPPDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFH 202
Query: 105 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164
R AMLG G I+PE F G WF + NL +
Sbjct: 203 GRLAMLGIVGCIVPELFFSQGP-------WFDLSSF----------------NLTRLGLV 239
Query: 165 EIVLVGGAEYYRIT-----NGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 219
+ ++ EY+R NG D D+ +PG FDPL L + K+KEIKNGRLA
Sbjct: 240 ALQVIAPLEYWRGNRGFSWNGDDGPDQSYPG--FDPLRLTDEE-----TKLKEIKNGRLA 292
Query: 220 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
M AMLG +Q+++TG+ P+ NL++HLS+P + N+LT
Sbjct: 293 MTAMLGLEVQSHITGKSPLVNLSEHLSNPASVNILT 328
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 122/262 (46%), Gaps = 45/262 (17%)
Query: 5 LLGLQLQVHQTLLLSSPLLS-SPRRKPPLLPSLSPS---PSPPLTKSSPSGPDRRIFLPE 60
+ GL++Q H T SP+ + PL ++ + P PP+ + SG ++ P
Sbjct: 857 MFGLEVQSHVTG--KSPITNLIDHLSHPLTANIGTNLSQPWPPVAMFASSGHKDGLWFPN 914
Query: 61 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 120
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE
Sbjct: 915 -----AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPEL 969
Query: 121 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 180
K WF+ G +DG L + + + EY+R G
Sbjct: 970 LGK--------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGG 1006
Query: 181 LDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 236
+ + D+ +PG FDPL L D + E+KNGRLA+ A+ G Q TGE
Sbjct: 1007 FNWQKGDLDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGES 1059
Query: 237 PVENLAKHLSDPFANNLLTVIS 258
P+ NL HL++P N+ T ++
Sbjct: 1060 PLANLTAHLANPLGANITTNLA 1081
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 125/262 (47%), Gaps = 44/262 (16%)
Query: 4 VLLGLQLQVHQTLLLSSPLLS-SPRRKPPLLPSLSPS--PSPPLTKSSPSGPDRRIFLPE 60
LLG ++Q H ++ SPL + + + PL +++ S P+ + SG ++ P
Sbjct: 483 ALLGFEVQRH--VVGGSPLANLADHLQQPLQHNIADSIMHQWPVAMFASSGHKDGLWFPN 540
Query: 61 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 120
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE
Sbjct: 541 -----AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPEL 595
Query: 121 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 180
K WF+ G +DG L + + + EY+R G
Sbjct: 596 LGK--------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGG 632
Query: 181 LDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 236
+ + D+ +PG FDPL L D + E+KNGRLA+ A+ G Q TGE
Sbjct: 633 FNWQKGDLDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGES 685
Query: 237 PVENLAKHLSDPFANNLLTVIS 258
P+ NL+ HL++P N+ T ++
Sbjct: 686 PLANLSAHLANPIGANIATNLA 707
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 96/195 (49%), Gaps = 35/195 (17%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YLTGE GD G+DP GL+ P F + Q E+ H R +ML G ++PE
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGN----- 782
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL---DLE- 184
WF+ + D N FAV+A + +V EY+R G D E
Sbjct: 783 ---GAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGFLWNDEET 824
Query: 185 -DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243
D+ +PG FDPL L + K EIKNGRLAM M G +Q++VTG+ P+ NL
Sbjct: 825 IDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMIGMFGLEVQSHVTGKSPITNLID 877
Query: 244 HLSDPFANNLLTVIS 258
HLS P N+ T +S
Sbjct: 878 HLSHPLTANIGTNLS 892
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 115/261 (44%), Gaps = 44/261 (16%)
Query: 4 VLLGLQLQVHQT----LLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLP 59
+LGL++Q H T L+ S LS+P L S + + S +R ++ P
Sbjct: 295 AMLGLEVQSHITGKSPLVNLSEHLSNPASVNILTGGGSVAMFAGSGRKSQKSDERPLWFP 354
Query: 60 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
L P +LTGE GD G+DP GL+ PD F + + E+ H R AML G ++P+
Sbjct: 355 NTL-----APSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAIVGALVPD 409
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 179
K +W++ +N I L I + +
Sbjct: 410 YLGK--------GIWYEA-------------AQNAGIGLKEVAI----FTAAYGVFEVAR 444
Query: 180 GLDLED---KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 236
G+ ++PG FDPL L D K EIKNGRLA+ A+LGF +Q +V G
Sbjct: 445 GVKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGS 497
Query: 237 PVENLAKHLSDPFANNLLTVI 257
P+ NLA HL P +N+ I
Sbjct: 498 PLANLADHLQQPLQHNIADSI 518
>gi|219362417|ref|NP_001136606.1| uncharacterized protein LOC100216729 [Zea mays]
gi|194696340|gb|ACF82254.1| unknown [Zea mays]
Length = 291
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 123/263 (46%), Gaps = 62/263 (23%)
Query: 44 LTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------- 92
+ K+S S DR ++ P + P+YL G + GDYG+DPFGL K +
Sbjct: 46 VAKTSISS-DRPLWFPGAV-----APDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQ 99
Query: 93 --------------------------------DFSKYQAYELIHARWAMLGAAGFIIPEA 120
+++ ELIH RWAML G + E
Sbjct: 100 NLAKNEAGGIIGTRFESSDVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEW 159
Query: 121 FNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 179
W G + L+DG++ Y G+ +P + + E++++G E+ R
Sbjct: 160 LTG--------VTWQDAGKVELVDGSS--YLGQPLPFTISTLIWIEVLVIGYIEFQRNAE 209
Query: 180 GLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238
LD E +L+PGG FDPL LA DP++ L++ EIK+ RLAM A LGF +QA TG+GP+
Sbjct: 210 -LDPEKRLYPGGSYFDPLALAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 268
Query: 239 ENLAKHLSDPFANNLLTVISGNA 261
N A HLSDP + G++
Sbjct: 269 NNWATHLSDPLHTTIFDTFGGSS 291
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 104/207 (50%), Gaps = 34/207 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE G
Sbjct: 62 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 121
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 184
P+ W+ D + YF + + + E +L E R + G +
Sbjct: 122 VPK--WY-------DAGKVEYFASSSTL-----FVIEFILFHYVELRRWQDIKYPGSVNQ 167
Query: 185 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
D L +PGG F+PL + + K KE+ NGRLAM A LGF +Q V
Sbjct: 168 DPLFKQYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNV 223
Query: 233 TGEGPVENLAKHLSDPFANNLLTVISG 259
TG+GP +NL +HLSDP+ N ++ + G
Sbjct: 224 TGKGPFDNLLQHLSDPWHNTIIQTLQG 250
>gi|115822|sp|P10707.1|CB2D_SOLLC RecName: Full=Chlorophyll a-b binding protein 1D; AltName:
Full=LHCII type I CAB-1D; Short=LHCP
gi|170428|gb|AAA34158.1| chlorophyll a/b-binding protein Cab-1D, partial [Solanum
lycopersicum]
gi|224929|prf||1204205D protein 1D,chlorophyll binding
Length = 116
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 14 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 73
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 74 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
>gi|170409|gb|AAA34150.1| chlorophyll a/b-binding protein Cab-1A, partial [Solanum
lycopersicum]
gi|170414|gb|AAA34152.1| chlorophyll a/b-binding protein Cab-1C, partial [Solanum
lycopersicum]
Length = 116
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 14 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 73
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 74 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 104
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 107/203 (52%), Gaps = 28/203 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 64 PGYLNGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
PE W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 124 VPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 172
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 173 FKQYSLPPNEVGYPGGIFNPLNFAPTVEA----KEKELANGRLAMLAFLGFVIQHNVTGK 228
Query: 236 GPVENLAKHLSDPFANNLLTVIS 258
GP ENL +HLSDP+ N ++ +S
Sbjct: 229 GPFENLLQHLSDPWHNTIVQTLS 251
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 106/207 (51%), Gaps = 28/207 (13%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YL G + GD G+DP L++ P+D + EL++ RWAMLG AG +IPE K G
Sbjct: 54 QSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL 113
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLED 185
PE W+ D YF + + ++ ++ V + + I N G +D
Sbjct: 114 LNAPE--WY-------DAGKETYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQD 162
Query: 186 KL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
+ +PG F+PL A + K KE+ NGRLAM A LGF +Q VT
Sbjct: 163 PIFKSYSLPPHECGYPGSVFNPLNFAPTLEN----KEKELANGRLAMLAFLGFLVQHNVT 218
Query: 234 GEGPVENLAKHLSDPFANNLLTVISGN 260
G+GP ENL +HL+DP+ N ++ ISG
Sbjct: 219 GKGPFENLQQHLADPWHNTIIQTISGQ 245
>gi|159138449|gb|ABW89227.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 71/90 (78%), Gaps = 2/90 (2%)
Query: 165 EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
+++L+G E YRI G ++ D L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 15 QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPXAFAELKVKEIKNGRLAMFS 74
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
M GFF+QA VTG+GP+ENLA HL+DP ANN
Sbjct: 75 MFGFFVQAIVTGKGPLENLADHLADPVANN 104
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 105/192 (54%), Gaps = 35/192 (18%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P++LTGE PGD G+DP GLS P F + + E+ H R AMLG G I+PE F G
Sbjct: 167 PDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFSQGP-- 224
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR-----ITNGLDL 183
WF L G L G + VIA + EY+R NG D
Sbjct: 225 -----WFD-----LSGFNLTRLGL-----VALQVIAPL------EYWRGNRGFSWNGDDG 263
Query: 184 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243
D+ +PG FDPL L D K+KEIKNGRLAM AMLG +Q+++TG+ P+ NL++
Sbjct: 264 PDQSYPG--FDPLRLTDDE-----TKLKEIKNGRLAMTAMLGLEVQSHITGKSPLVNLSE 316
Query: 244 HLSDPFANNLLT 255
HLS+P + N+LT
Sbjct: 317 HLSNPASVNILT 328
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 125/262 (47%), Gaps = 44/262 (16%)
Query: 4 VLLGLQLQVHQTLLLSSPLLS-SPRRKPPLLPSLSPS--PSPPLTKSSPSGPDRRIFLPE 60
LLG ++Q H ++ SPL + + + PL +++ S P+ + SG ++ P
Sbjct: 483 ALLGFEVQRH--VVGGSPLANLAEHLQQPLQRNIADSIMHQWPVAMFASSGHKDGLWFPN 540
Query: 61 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 120
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE
Sbjct: 541 -----AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPEL 595
Query: 121 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 180
K WF+ G +DG L + + + EY+R G
Sbjct: 596 LGK--------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGG 632
Query: 181 LDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 236
+ + D+ +PG FDPL L D + E+KNGRLA+ A+ G Q TGE
Sbjct: 633 FNWQKGELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGES 685
Query: 237 PVENLAKHLSDPFANNLLTVIS 258
P+ NL+ HL++P N+ T ++
Sbjct: 686 PLANLSAHLANPIGANITTNLA 707
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 95/195 (48%), Gaps = 35/195 (17%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YLTGE GD G+DP GL+ P F + Q E+ H R +ML G ++PE
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGN----- 782
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL-----DL 183
WF+ + D N FAV+A + +V EY+R G +
Sbjct: 783 ---GAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGFLWNDEET 824
Query: 184 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243
D+ +PG FDPL L + K EIKNGRLAM M G +Q++VTG+ P+ NL
Sbjct: 825 VDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMIGMFGLEVQSHVTGKSPITNLID 877
Query: 244 HLSDPFANNLLTVIS 258
HLS P N+ T +S
Sbjct: 878 HLSHPLTANIGTNLS 892
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 114/261 (43%), Gaps = 44/261 (16%)
Query: 4 VLLGLQLQVHQT----LLLSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLP 59
+LGL++Q H T L+ S LS+P L S + + S +R ++ P
Sbjct: 295 AMLGLEVQSHITGKSPLVNLSEHLSNPASVNILTGGGSVAMFAASGRKSQKSDERPLWFP 354
Query: 60 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 119
L P +L GE GD G+DP GL+ PD F + + E+ H R AML G ++P+
Sbjct: 355 NTL-----APSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPD 409
Query: 120 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN 179
K +W++ +N I L I + +
Sbjct: 410 YLGK--------GIWYEA-------------AQNAGIGLKEVAI----FTAAYGVFEVAR 444
Query: 180 GLDLED---KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 236
G+ ++PG FDPL L D K EIKNGRLA+ A+LGF +Q +V G
Sbjct: 445 GVKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGS 497
Query: 237 PVENLAKHLSDPFANNLLTVI 257
P+ NLA+HL P N+ I
Sbjct: 498 PLANLAEHLQQPLQRNIADSI 518
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 90/205 (43%), Gaps = 40/205 (19%)
Query: 5 LLGLQLQVHQTLLLSSPLLS-SPRRKPPLLPSLSPS---PSPPLTKSSPSGPDRRIFLPE 60
+ GL++Q H T SP+ + PL ++ + P P + + SG ++ P
Sbjct: 857 MFGLEVQSHVTG--KSPITNLIDHLSHPLTANIGTNLSQPWPQVAMFASSGHKDGLWFPN 914
Query: 61 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 120
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE
Sbjct: 915 -----AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPEL 969
Query: 121 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 180
K WF+ G +DG L + + + EY+R G
Sbjct: 970 LGK--------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGG 1006
Query: 181 LDLE----DKLHPGGPFDPLGLAKD 201
+ + D+ +PG FDPL L D
Sbjct: 1007 FNWQKGELDRSYPG--FDPLNLTTD 1029
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 193 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 228
FDPL LA DPD +A ++V E+ +GRLAM M+G +
Sbjct: 931 FDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIV 966
>gi|242050544|ref|XP_002463016.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
gi|241926393|gb|EER99537.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
Length = 288
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 119/254 (46%), Gaps = 61/254 (24%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 92
DR ++ P + P+YL G + GDYG+DPFGL K +
Sbjct: 51 DRPLWFPGAV-----APDYLDGTLVGDYGFDPFGLGKPVEYLQFDLDSLDQNLAKNEPGV 105
Query: 93 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 129
+++ ELIH RWAML G + E
Sbjct: 106 VIGTRFESSDVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG------ 159
Query: 130 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLH 188
W G + L+DG++ Y G+ +P ++ + E++++G E+ R LD E +L+
Sbjct: 160 --VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDPEKRLY 214
Query: 189 PGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 247
PGG FDPLGLA DP++ L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSD
Sbjct: 215 PGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSD 274
Query: 248 PFANNLLTVISGNA 261
P + ++
Sbjct: 275 PLHTTIFDTFGASS 288
>gi|445116|prf||1908421A light-harvesting complex IIa protein
Length = 286
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 116/247 (46%), Gaps = 61/247 (24%)
Query: 53 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 92
DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 50 DRPLWFPG-----AQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGE 104
Query: 93 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 129
+++ ELIH RWAML G + E
Sbjct: 105 IIGTRFEDADVKSTPFQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG------ 158
Query: 130 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLH 188
W G + L+DG++ Y G+ +P + + E++++G E+ R LD E +L+
Sbjct: 159 --VTWQDAGKVELVDGSS--YLGQPLPFTITTLIWIEVLVIGYIEFQRNAE-LDPERRLY 213
Query: 189 PGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 247
PGG FDPLGLA DP++ L++ EIK+ RLAM A LGF +QA TG+G + N A HLSD
Sbjct: 214 PGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGRLNNWATHLSD 273
Query: 248 PFANNLL 254
P +
Sbjct: 274 PLHTTIF 280
>gi|170421|gb|AAA34155.1| chlorophyll a/b-binding protein Cab-3A, partial [Solanum
lycopersicum]
gi|170426|gb|AAA34157.1| chlorophyll a/b-binding protein Cab-3B, partial [Solanum
lycopersicum]
Length = 116
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++VL+G E YRI G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 14 CQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 73
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 74 SMFGFFVQAIVTGKGPLENLADHIADPVNNN 104
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 111/218 (50%), Gaps = 15/218 (6%)
Query: 46 KSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 105
KS G R LP + +++P YL G +PGD+G+DP L + P Y EL++A
Sbjct: 46 KSKSGGAKRDAALPS-WMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNA 104
Query: 106 RWAMLGAAGFIIPEAFNKFGANC-GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI- 163
R+AML AG ++PE + G + G W+ G + FG + L+FA +
Sbjct: 105 RFAMLAVAGILVPELLSNIGFSWPGAGVAWYDAGKFEYFAPASSLFGVQM---LLFAWVE 161
Query: 164 ----AEIVLVGGAEYYRITNGLDLEDKL---HPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
+ V G A I L D +PGG FDP G +K LK+KEIKNG
Sbjct: 162 IRRYQDFVKPGSANQDPIFTNNKLPDGNEPGYPGGIFDPFGWSK--GDIKSLKLKEIKNG 219
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 254
RLAM A GF QAY TG P++NL+ HL+DP++ +
Sbjct: 220 RLAMLAFAGFIGQAYTTGTTPLKNLSTHLADPWSTTVW 257
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 124/241 (51%), Gaps = 39/241 (16%)
Query: 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQA 99
T + G DR+++ + YL G +PGD+G+DP GLS P+ ++ A
Sbjct: 39 TPPAKQGADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLSD-PEGTGGFIEPRWLA 92
Query: 100 Y-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPIN 157
Y E+ + R AM+G G + PE K G A+ WF+TG + G T Y+ P
Sbjct: 93 YGEVFNGRTAMMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAG-TYTYWAD--PYT 149
Query: 158 LVFAVIAEIVLVGGAEYYRITNG-----------LDLEDKL-------HPGGP-FDPLGL 198
L + E+ LVG AE+ R + L LE L +PGGP F+PLG
Sbjct: 150 LF---VFELALVGFAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGF 206
Query: 199 A-KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
K + LK+KEIKNGRLAM A LGF +QA TG GPV+NL HL+DP NN+LT +
Sbjct: 207 GTKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSL 266
Query: 258 S 258
Sbjct: 267 K 267
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 104/207 (50%), Gaps = 34/207 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE G
Sbjct: 55 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 114
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 184
P+ W+ D + YF + + + E +L E R + G +
Sbjct: 115 VPK--WY-------DAGKVEYFASSSTL-----FVIEFILFHYVELRRWQDIKYPGSVNQ 160
Query: 185 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
D L +PGG F+PL + + K KE+ NGRLAM A LGF +Q V
Sbjct: 161 DPLFKQYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNV 216
Query: 233 TGEGPVENLAKHLSDPFANNLLTVISG 259
TG+GP +NL +HLSDP+ N ++ + G
Sbjct: 217 TGKGPFDNLLQHLSDPWHNTIIQTLQG 243
>gi|297740653|emb|CBI30835.3| unnamed protein product [Vitis vinifera]
Length = 148
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 88/162 (54%), Gaps = 47/162 (29%)
Query: 91 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 150
P+ F+K + E+IH RWAMLGA G + PE ++ G G EAVWFK GA
Sbjct: 22 PNTFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGA----------- 69
Query: 151 GKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKV 210
+ +E++L+G E YRI G PLG +V
Sbjct: 70 ----------QIFSEVILMGAVEGYRIAGG--------------PLG-----------EV 94
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 95 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 136
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 107/205 (52%), Gaps = 28/205 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP L++ P++ + EL++ RWAMLG AG ++PE F + G
Sbjct: 63 PAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGIIN 122
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 VPK--WY-------DAGKQEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A A K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPPNEVGYPGGIFNPLNFAPT----AEAKEKELANGRLAMLAFLGFIVQHNVTGK 227
Query: 236 GPVENLAKHLSDPFANNLLTVISGN 260
GP +NL +HLSDP+ N ++ GN
Sbjct: 228 GPFDNLLQHLSDPWHNTIIQTFGGN 252
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 46 KSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 105
KS G R LP + +++P YL G +PGD+G+DP L + P Y EL++A
Sbjct: 46 KSKSGGAKRDAALPS-WMPGADLPGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNA 104
Query: 106 RWAMLGAAGFIIPEAFNKFGANC-GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI- 163
R+AML AG ++PE + G + G W+ G + FG + L+FA +
Sbjct: 105 RFAMLAVAGILVPELLSNIGFSWPGAGVAWYDAGKFEYFAPASSLFGVQM---LLFAWVE 161
Query: 164 ----AEIVLVGGAEYYRITNGLDLEDKL---HPGGPFDPLGLAKDPDQFALLKVKEIKNG 216
+ V G A I L D +PGG FDP G +K LK+KEIKNG
Sbjct: 162 IRRYQDFVKPGSANQDPIFTNNKLPDGNEPGYPGGIFDPFGWSK--GDIKSLKLKEIKNG 219
Query: 217 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNL 253
RLAM A GF QAY TG P++NL+ HL+DP++ +
Sbjct: 220 RLAMLAFAGFIGQAYTTGTTPLKNLSTHLADPWSTTV 256
>gi|15081739|gb|AAK82524.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
Length = 290
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 113/237 (47%), Gaps = 56/237 (23%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 92
P++L G + GDYG+DPFGL K +
Sbjct: 65 PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 124
Query: 93 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 144
+++ ELIH RWAML G + E W G + L+DG
Sbjct: 125 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDG 176
Query: 145 NTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPD 203
++ Y G+ +P ++ + E++++G E+ R LD E +L+PGG F DPLGLA DP+
Sbjct: 177 SS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPE 233
Query: 204 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 260
+ A L++ EIK+ RLAM A LGF +QA TG+GP A HLSDP ++ S +
Sbjct: 234 KTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPRNYWATHLSDPLHTTIIDTFSSS 290
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 124/246 (50%), Gaps = 42/246 (17%)
Query: 39 SPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS--- 95
S SPP + DR+++ Z YL G +PGD+G+DP GLS
Sbjct: 37 SSSPPAKQG-----DRQLWFAX-----XZXLTYLDGTLPGDFGFDPLGLSDPEGTGGFIE 86
Query: 96 -KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGK 152
++ AY E+ + R AM+G G I PEA K G A+ WF+ GA+ G T Y+
Sbjct: 87 PRWLAYGEIFNGRTAMMGVVGMIAPEALGKVGLVPSETAIPWFQAGAIPPAG-TYQYWAD 145
Query: 153 NIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGP-F 193
P L + E+ L+G AE+ R+ + L LE D +PGGP F
Sbjct: 146 --PYTLF---VFEMALIGFAEHRRLQDWYNPGSMGKQYFLGLEKYLGGSGDPAYPGGPIF 200
Query: 194 DPLGLA-KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+PLG K + LK+KEIKNGRLAM A LG LQA TG GP +NL HLSDP NN
Sbjct: 201 NPLGFGTKSEKEMKELKLKEIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNN 260
Query: 253 LLTVIS 258
+LT +
Sbjct: 261 ILTSLK 266
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 106/207 (51%), Gaps = 28/207 (13%)
Query: 67 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126
+ P YL G + GD G+DP L++ P+D + EL++ RWAMLG AG +IPE K G
Sbjct: 37 QSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL 96
Query: 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLED 185
PE W+ D YF + + ++ ++ V + + I N G +D
Sbjct: 97 LNAPE--WY-------DAGKETYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQD 145
Query: 186 KL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233
+ +PG F+PL A + K KE+ NGRLAM A LGF +Q VT
Sbjct: 146 PIFKSYSLPPHECGYPGSVFNPLNFAPTLEN----KEKELANGRLAMLAFLGFLVQHNVT 201
Query: 234 GEGPVENLAKHLSDPFANNLLTVISGN 260
G+GP ENL +HL+DP+ N ++ ISG
Sbjct: 202 GKGPFENLQQHLADPWHNTIIQTISGQ 228
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 105/218 (48%), Gaps = 38/218 (17%)
Query: 50 SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 109
+ PDR I+ P S P +L G +PGD+G+DP GL P+ +L+H RWAM
Sbjct: 55 AAPDRPIWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAM 109
Query: 110 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLV 169
LGAAG IPE K G P W+ G +T F I E++L+
Sbjct: 110 LGAAGIFIPEFLTKIGILNTPS--WYTAGEHQYFTDTTTLF------------IIELILI 155
Query: 170 GGAEYYR-----ITNGLDLEDKLHP---------GGP----FDPLGLAK-DPDQFALLKV 210
G AE R I G D + P G P DPLG P++ L+
Sbjct: 156 GWAEGRRWADIIINPGCVNTDPIFPQQQVHGHRRGEPCGLWLDPLGWGTVSPEKIKELRT 215
Query: 211 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
KEIKNGR+AM A++G + QA TG GP++N H++DP
Sbjct: 216 KEIKNGRVAMLAVMGAWFQAEHTGTGPIDNFFAHVADP 253
>gi|305377032|dbj|BAJ15879.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 129
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
+++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF
Sbjct: 27 CQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 86
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 87 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 117
>gi|412985267|emb|CCO20292.1| unknown [Bathycoccus prasinos]
Length = 277
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 131/289 (45%), Gaps = 68/289 (23%)
Query: 4 VLLGLQLQVHQTLLLSSPLLSS--PRRKPPLLPSLSPSPSPPLTKS-SPSGPDRRIFLPE 60
++ +LQ++ ++P + P +K P+ S P+ P K +P +R ++ P
Sbjct: 1 MVFATKLQINAVFKKAAPAKKTVTPVKKAPIKKS-PPAKKPATQKKFTPPSGERDLWYP- 58
Query: 61 GLLDRSEIPEYLTGEVPGDYGYDPFGLSK------------------------------- 89
+E P +L G +PGD G+DPFGLSK
Sbjct: 59 ----NAEAPAWLDGSMPGDRGFDPFGLSKPTEYLQFDLDRLDGSAAKNPSGNVIGKLKKT 114
Query: 90 --KPD-----------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 136
KP D ++++ EL+H+RWAMLG G I EA G W
Sbjct: 115 DNKPTERTIVPFNEAFDINRFRECELLHSRWAMLGLVGVIFGEA--------GTGVAWQD 166
Query: 137 TGALLLDGNTLNYFGKNI---PINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF 193
G + L+ Y G N+ NL E++LVG E+YR LD E + +PGG F
Sbjct: 167 AGKVELE--QTQYLGFNLWGEGSNLAALTAIEVLLVGTLEFYRSAE-LDQEKRCYPGGAF 223
Query: 194 DPLGLA-KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 241
DPLG A K P++ LK E+K+GRLAM AM G QA GEG +E L
Sbjct: 224 DPLGFASKSPEETFRLKTAELKHGRLAMVAMFGVAQQALNNGEGALEAL 272
>gi|169197|gb|AAA33702.1| Major Cab protein [Petunia x hybrida]
Length = 125
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 72/91 (79%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++VL+G E YR+ G ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF
Sbjct: 23 CQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMF 82
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 83 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 113
>gi|169199|gb|AAA33703.1| Major Cab protein [Petunia x hybrida]
Length = 136
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 134 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNG--LDLEDKLH 188
W + + L+Y G I + AV A ++VL+G E YR+ G ++ D L
Sbjct: 1 WIPAVSQIFSEGELDYLGNPSLIHAQSILAVWACQVVLMGAVEGYRVAGGPLGEVIDPLC 60
Query: 189 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP ENLA HL+DP
Sbjct: 61 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFENLADHLADP 120
Query: 249 FANN 252
NN
Sbjct: 121 VNNN 124
>gi|169201|gb|AAA33704.1| Major Cab protein [Petunia x hybrida]
Length = 129
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 71/91 (78%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
++VL+G E YR+ G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF
Sbjct: 29 CQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 88
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 89 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 119
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 101/204 (49%), Gaps = 28/204 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GD G+DP L++ P D + EL++ RWAMLG AG +IPE K G
Sbjct: 58 PAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVAGMLIPELLTKAGLLS 117
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 179
PE W+ D YF + + +V ++ V + + I N
Sbjct: 118 APE--WY-------DAGKETYFASSSTLFVVEFILFHYVEI--RRWQDIKNPGSVNQDPI 166
Query: 180 ----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
L D +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 167 FKSYSLPDHDCGYPGSVFNPLNFAPTLEN----KEKELANGRLAMLAFLGFLVQHNVTGK 222
Query: 236 GPVENLAKHLSDPFANNLLTVISG 259
GP ENL +HL+DP+ N ++ SG
Sbjct: 223 GPFENLMQHLADPWHNTIIQTFSG 246
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 100/188 (53%), Gaps = 20/188 (10%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGDYGYDP + P+ YQ E+ + RWAM+G AG + +A +FG +
Sbjct: 56 PAYLDGSMPGDYGYDPLRMGGNPELLKWYQQGEIENGRWAMIGVAGMLFTDALTQFGISD 115
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLH 188
P+ W++ GA+ + P +L + EI + E +RI+ K
Sbjct: 116 LPD--WYEAGAVAQASS---------PFDLQTLIAIEIFVFATVEGFRIST----WKKTG 160
Query: 189 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
G D +G+ PD +++KEIKNGRLAMFA +GF Q +V G GPVE L HL +P
Sbjct: 161 KPGFLDIMGM-DSPD----MRLKEIKNGRLAMFAFVGFVAQYFVNGMGPVEGLLNHLENP 215
Query: 249 FANNLLTV 256
NN+ +
Sbjct: 216 QQNNVFST 223
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 101/193 (52%), Gaps = 21/193 (10%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P++L G +PGDYG+DP GL + + YQ EL+HARWAMLG AG PE F +
Sbjct: 51 PKHLDGTMPGDYGFDPLGLGEDKAALAWYQQAELMHARWAMLGVAGMAAPEIFGNPLVD- 109
Query: 129 GPEAVW----FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGG--------AEYYR 176
GP W F G + D NTL + + AE+ A+ Y
Sbjct: 110 GPLPNWADAPFYDG-YIADANTL------FVVQMFLMNWAEVRRWQDMKNPGSVHADPYD 162
Query: 177 ITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+ D +PGG F+P+G+AK ++ L+ KEI NGRLAM A +G F+Q VTG
Sbjct: 163 ESRKCTGTDVGYPGGGLFNPMGMAKSAEEEKTLRTKEIANGRLAMVAAMGCFIQHDVTGT 222
Query: 236 GPVENLAKHLSDP 248
GPV NL HL+DP
Sbjct: 223 GPVANLKAHLADP 235
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 105/207 (50%), Gaps = 34/207 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 184
P+ W+ D YF + + + E +L E R + G +
Sbjct: 116 APQ--WY-------DAGKATYFASSSTL-----FVIEFILFHSVEIRRWQDIKNPGCVNQ 161
Query: 185 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
D + +PG F+PL +P A K KE+ NGRLAM A LGF +Q V
Sbjct: 162 DPIFKSYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNV 217
Query: 233 TGEGPVENLAKHLSDPFANNLLTVISG 259
T +GP +NL +HLSDP+ N ++ +SG
Sbjct: 218 TQKGPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 124/239 (51%), Gaps = 40/239 (16%)
Query: 51 GPDR---RIFLPEGLLDRSEI------PEYLTGEVPGDYGYDPFGLSKKPD-----DFSK 96
GPDR R+ P G RS I YL G +PGDYG+DP GL D
Sbjct: 5 GPDRIADRMPPPPGGSKRSLIFASKQSLSYLDGTLPGDYGFDPLGLMDPEGAGGFIDPQW 64
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIP 155
E+I+ R+AMLGAAG I PE + G A+ WF++G + GN +Y+ P
Sbjct: 65 LPYAEIINGRFAMLGAAGAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGN-YSYWAD--P 121
Query: 156 INLVFAVIAEIVLVGGAEYYRITNG-----------LDLEDKL-------HPGGP-FDPL 196
L + E+ L+G AE+ R + L LE L +PGGP F+ L
Sbjct: 122 YTLF---VLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFL 178
Query: 197 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
G K+ + LKVKE+KNGRLAM A+LG+F QA TG GP +NL HL+DP NN+LT
Sbjct: 179 GFGKNEKELQELKVKEVKNGRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLT 237
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 116/211 (54%), Gaps = 35/211 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P +L G + GDYG+DP L ++P Y EL+H R+AMLGAAG I+ K G
Sbjct: 40 PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGF 99
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAE---YYRITN------ 179
PE W+ G ++++ N +++ P L I ++ L+G AE +Y N
Sbjct: 100 -PE--WYDAGKVVVEKNNIDF-----PTLL----ITQLYLMGWAETKRWYDFKNPGSQGD 147
Query: 180 --GLDLEDKL------HPGGPF-DPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQ 229
L D+ +PGG F DP+GL++ D D++ K KEIKNGRLAM A LGF Q
Sbjct: 148 GSFLGFTDEFKGLENGYPGGRFFDPMGLSRGDADKYKEYKQKEIKNGRLAMIACLGFAAQ 207
Query: 230 AYVTGEGPVENLAKHLSDP----FANNLLTV 256
TG+GP++NLA HL+DP FA N +++
Sbjct: 208 YAATGKGPLDNLADHLADPNHVNFATNGVSI 238
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 109/211 (51%), Gaps = 28/211 (13%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 123
YL G +PGDYG+DP GLS P+ K+ AY ELIH RWAMLG AG + PE
Sbjct: 60 SYLDGSLPGDYGFDPLGLSD-PEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEVLGG 118
Query: 124 FGANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 180
G P+ VWFK G + G T +Y+ I + A + I + A+ Y
Sbjct: 119 MGII--PQETGLVWFKAGMIPAQG-TYDYWASPFTIFWINAFLMNIAELRRAQDYWNPGS 175
Query: 181 LDLED-----KL--------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
+ +D K+ +PGG F+ + + A +K KEIKNGRLAM A G
Sbjct: 176 MGKQDFAGLEKMLGGSGDPAYPGGFFNFM--KQGEKDMAAMKTKEIKNGRLAMMACFGCG 233
Query: 228 LQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
QA +TGEGPV+NL H+ DPF +NLL S
Sbjct: 234 AQACMTGEGPVKNLVDHVIDPFGHNLLVNFS 264
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 113/203 (55%), Gaps = 31/203 (15%)
Query: 81 GYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-W 134
G+DP GLS K+ AY E+I+ R+AMLGAAG I PE F K G A+ W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALPW 60
Query: 135 FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDL 183
F+TG + G + Y+ P L + E+ L+G AE+ R+ + L L
Sbjct: 61 FQTGVIPPAG-SYTYWAD--PYTLF---VFEMALMGFAEHRRLQDWYNPGSMGKQYFLGL 114
Query: 184 E-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
E D +PGGPF +PLG KD LK+KEIKNGRLAM A+LG+F+Q VTG
Sbjct: 115 EKGFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGV 174
Query: 236 GPVENLAKHLSDPFANNLLTVIS 258
GP +NL HL+DP +NN+LT +
Sbjct: 175 GPFQNLLDHLADPVSNNVLTSLK 197
>gi|255087370|ref|XP_002505608.1| lycopene beta cyclase [Micromonas sp. RCC299]
gi|226520878|gb|ACO66866.1| lycopene beta cyclase [Micromonas sp. RCC299]
Length = 1447
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 110/204 (53%), Gaps = 17/204 (8%)
Query: 51 GPDRRIFLPEGLLD---RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 107
G R+ FLP LL+ + +P YLTGE+PGD G+DP + + D K + ELIH RW
Sbjct: 1241 GERRKKFLPAALLNVTGQGVVPPYLTGEMPGDVGWDPLQMGAQ-RDIMKLRERELIHGRW 1299
Query: 108 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNT----LNYFGKNIPINLVFAVI 163
AML A G ++PE+ + P W+ T N+ L Y G+NIP + + I
Sbjct: 1300 AMLAAIGVLVPESTARLSLFGTPGQHWWNTHIEWTGTNSGIPELTYLGENIPWGVFWLPI 1359
Query: 164 AEIVLVGGAEYYRITNGLDLE-----DKLHPGGP-FDPLGLAK--DPDQFALLKVKEIKN 215
+ L AE R T L++E D+L+PGG FDPLG+ ++ +LK EI++
Sbjct: 1360 IHLPLFFVAEMLR-TGRLEVEAFKDLDRLYPGGKLFDPLGIGGGVSDEELKILKTIEIQH 1418
Query: 216 GRLAMFAMLGFFLQAYVTGEGPVE 239
RLAM A GF ++A G GP++
Sbjct: 1419 CRLAMIASFGFIVEALAWGAGPLD 1442
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 31/224 (13%)
Query: 37 SPSPSPPLTKSS--PSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 94
+P+ +P ++S +R ++L D + P +L G +PGD+G+DP GL P+
Sbjct: 31 APAKAPVSARASLKVQAANRELWLK----DSTVAPAHLDGTLPGDFGFDPLGLGADPERL 86
Query: 95 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 154
YQ EL++ARWAM+ AG E G W++ GA D +
Sbjct: 87 KYYQEAELMNARWAMMAVAGICTTEILGIGGP-------WYEAGAAEYD----------L 129
Query: 155 PINLVFAVIAEIVLVGGAEYYRITNGLDL-EDKLHPGGPFDPLGLAKDPDQFALLKVKEI 213
PIN + AV + ++G E RI L + ++ P+DP+G+ + DQ AL KE+
Sbjct: 130 PINALLAV--QFPVMGILELRRIRGWLATGKSGVNETFPWDPMGM--NGDQMAL---KEV 182
Query: 214 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
KNGRLAM A +G +QA V GPV L H++DPF N+ T I
Sbjct: 183 KNGRLAMIAFVGIVVQAIVYRTGPVAALKDHITDPFGCNMATNI 226
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 106/204 (51%), Gaps = 28/204 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D + YF + + +V ++ V + + I N G +D +
Sbjct: 119 APQ--WY-------DASKSEYFASSSTLFVVEFILFHYVEI--RRWQDIKNPGSVNQDPI 167
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 168 FKSYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFLIQHNVTGK 223
Query: 236 GPVENLAKHLSDPFANNLLTVISG 259
GP +NL +HLSDP+ N ++ SG
Sbjct: 224 GPFDNLLQHLSDPWHNTIIQTFSG 247
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 28/204 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + ++ I N G +D +
Sbjct: 116 APQ--WY-------DAGKATYFASSNTLFVIEFILFHYVEI--RQWQDIKNPGCVNQDPI 164
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PG F+PL +P A K KE+ NGRLAM A LGF +Q VT +
Sbjct: 165 FKSYRLPSDECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQK 220
Query: 236 GPVENLAKHLSDPFANNLLTVISG 259
GP +NL +HLSDP+ N ++ +SG
Sbjct: 221 GPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 107/204 (52%), Gaps = 28/204 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 116 APQ--WY-------DAGKATYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 164
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PG F+PL +P A K KE+ NGRLAM A LGF +Q VT +
Sbjct: 165 FKSYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQK 220
Query: 236 GPVENLAKHLSDPFANNLLTVISG 259
GP +NL +HLSDP+ N ++ +SG
Sbjct: 221 GPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|302839735|ref|XP_002951424.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
gi|300263399|gb|EFJ47600.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
Length = 317
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 108/221 (48%), Gaps = 57/221 (25%)
Query: 69 PEYLTGEVPGDYGYDPFGLSK------------------------------KPDDFS--- 95
PE+L G +PGD G+DP GL+K PD+ S
Sbjct: 97 PEWLDGSLPGDRGFDPLGLAKPSEFVVIGVDENDQNAAKNNKGSVEAVVTATPDEVSAEN 156
Query: 96 ------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 143
+++ ELIH RWAML G ++ EA W G + LD
Sbjct: 157 RLAPYSEVFGLARFRECELIHGRWAMLACLGCLVAEATTGVS--------WVDAGKVELD 208
Query: 144 GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPD 203
G + Y G ++P ++ + E++LVGGAE YR T + E + +PGG FDPL LA + +
Sbjct: 209 GAS--YAGLSLPFSITQLIWIEVILVGGAEIYRNTE-TNPEKRCYPGGFFDPLKLASEDE 265
Query: 204 QFAL-LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243
+ A LK EIK+ RLAM + G+ +QA+ TGEG + +LAK
Sbjct: 266 ERAFRLKTAEIKHARLAMVSFFGYSVQAFTTGEGALGSLAK 306
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 115/215 (53%), Gaps = 34/215 (15%)
Query: 71 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 124
YL G +PGD+G+DP GLS P+ ++ AY E+ + R AM+G G I PEA K
Sbjct: 60 YLDGTLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKV 118
Query: 125 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 180
G A+ WF+ GA+ G T Y+ P L + E+ L+G AE+ R+ +
Sbjct: 119 GLVPPETAIPWFQAGAIPPAG-TYQYWAD--PYTLF---VFEMALIGFAEHRRLQDWYNP 172
Query: 181 --------LDLE-------DKLHPGGP-FDPLGLA-KDPDQFALLKVKEIKNGRLAMFAM 223
L LE D +PGGP F+PLG K + LK+KEIKNGRLAM A
Sbjct: 173 GSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEIKNGRLAMLAF 232
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
LG LQA TG GP +NL HLSDP NN+LT +
Sbjct: 233 LGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSLK 267
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 107/204 (52%), Gaps = 28/204 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 116 APQ--WY-------DAGKATYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGCVNQDPI 164
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PG F+PL +P A K KE+ NGRLAM A LGF +Q VT +
Sbjct: 165 FKSYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQK 220
Query: 236 GPVENLAKHLSDPFANNLLTVISG 259
GP +NL +HLSDP+ N ++ +SG
Sbjct: 221 GPFDNLLQHLSDPWHNTIIQTLSG 244
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 108/208 (51%), Gaps = 28/208 (13%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 123
YL G +PGDYG+DP GLS P+ ++ AY E+IH RWAMLG AG + PE
Sbjct: 69 SYLDGSLPGDYGFDPLGLSD-PEGAGGFINPQWLAYSEVIHGRWAMLGVAGMVAPEVLGG 127
Query: 124 FGANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG 180
G P+ VW+K G + G T +Y+ I + A + + A+ Y
Sbjct: 128 LGII--PQETGLVWYKAGMIPAQG-TYDYWANPFTIFWINAALMNFAELRRAQDYWNPGS 184
Query: 181 LDLEDKL-------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
+ ++ + +PGG F+ +G K A ++VKEIKNGRLAM A
Sbjct: 185 MGKQELIGWEKMLGGSGEPAYPGGFFNIMGQGKS--DMAKMRVKEIKNGRLAMMACFACG 242
Query: 228 LQAYVTGEGPVENLAKHLSDPFANNLLT 255
QA +TGEGPV+NL H+SDPF +NLL
Sbjct: 243 AQAVMTGEGPVKNLIDHVSDPFGHNLLV 270
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 105/204 (51%), Gaps = 28/204 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + +V ++ V + + I N G +D +
Sbjct: 119 APQ--WY-------DAGKSEYFASSSTLFVVEFILFHYVEI--RRWQDIKNPGSVNQDPI 167
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 168 FKSYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFLIQHNVTGK 223
Query: 236 GPVENLAKHLSDPFANNLLTVISG 259
GP +NL +HLSDP+ N ++ SG
Sbjct: 224 GPFDNLLQHLSDPWHNTIIQTFSG 247
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 105/203 (51%), Gaps = 25/203 (12%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GD G+DP GL++ P++ Y EL++ARWAMLG AG ++PE K G
Sbjct: 56 PAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGVLVPEVLTKIGIIN 115
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKL- 187
P+ W+ D YF + + ++ ++ V + + G +D +
Sbjct: 116 APQ--WY-------DAGKSTYFASSSTLFVIEFILFHYVEIRRWQDIIKNPGCVNQDPIF 166
Query: 188 -----------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 236
+PG F+PL +P A K KE+ NGRLAM A LGF +Q +TG+G
Sbjct: 167 KNYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFMVQHGITGKG 222
Query: 237 PVENLAKHLSDPFANNLLTVISG 259
P ENL +HL DP+ N ++ +SG
Sbjct: 223 PFENLLQHLFDPWHNTIIQTLSG 245
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 113/210 (53%), Gaps = 33/210 (15%)
Query: 71 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 124
YL G +PGD+G+DP G+S P+ ++ AY E+IH RWAMLG AG + PE
Sbjct: 81 YLDGTLPGDFGFDPLGMSD-PEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGGM 139
Query: 125 GANCGPEA---VWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYY--- 175
G PE+ VWF +GA+ G T +Y+ + I N+ AEI G +Y+
Sbjct: 140 GVI--PESTGLVWFTSGAIPPQG-TFDYWANPMTIFWVNMCMMNFAEIKR--GQDYWFPG 194
Query: 176 --RITNGLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
T L E +PGG F+P L KD A ++ KE+KNGRLAM A LG
Sbjct: 195 SQAETPLLGWEKGFGGSGNPTYPGGKWFNPFNLGKD--DMASMQKKEVKNGRLAMMAFLG 252
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
+QA VTGEGP +N+ H++DPF N+L
Sbjct: 253 CMVQAAVTGEGPWKNICDHVADPFGANMLA 282
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 115/210 (54%), Gaps = 31/210 (14%)
Query: 71 YLTGEVPGDYGYDPFGLS--KKPDDFSKYQAY---ELIHARWAMLGAAGFIIPEAFNKFG 125
YL G +PGDYG+DP GL + F Q E+I+ R+AMLGAAG I PE + G
Sbjct: 16 YLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRIG 75
Query: 126 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG---- 180
A+ WF++G + GN +Y+ P L + E+ L+G AE+ R +
Sbjct: 76 LIPQETAIPWFQSGVIPPVGN-YSYWAD--PYTLF---VLEMALMGFAEHRRAQDYYKPG 129
Query: 181 -------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L LE L +PGGP F+ LG K+ + LKVKE+KNGRLAM A+LG
Sbjct: 130 SMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLG 189
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
+F QA TG GP +NL HL+DP NN+LT
Sbjct: 190 YFTQAIFTGVGPFQNLLDHLADPVHNNVLT 219
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 111/207 (53%), Gaps = 29/207 (14%)
Query: 71 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 125
YL G +PGD+G+DP G+S ++ AY E+IH RWAMLG AG + PE G
Sbjct: 97 YLDGTLPGDFGFDPLGMSDPEGQGGFVNPQWLAYSEVIHGRWAMLGVAGVVAPEVLGGMG 156
Query: 126 ---ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITN 179
A+ G VWFK+GA+ G T +Y+ I N+V AE V G +Y +
Sbjct: 157 IIPADTG--LVWFKSGAIPPQG-TFDYWADPTTIFWVNMVLMNFAE-VKRGQDYWYPGSQ 212
Query: 180 G----LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 227
G + E +PGG F+ L K A ++ KEIKNGRLAM A LG
Sbjct: 213 GETPLMGWEKGFAGSGAPAYPGGKYFNFANLGKT--DMAKMQKKEIKNGRLAMMAFLGIA 270
Query: 228 LQAYVTGEGPVENLAKHLSDPFANNLL 254
+QA TGEGP +N+ H+SDPFANN+L
Sbjct: 271 VQAVATGEGPFKNIVDHISDPFANNML 297
>gi|32307468|gb|AAP79139.1| chlorophyll a/b-binding protein CP29 [Bigelowiella natans]
Length = 291
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 121/271 (44%), Gaps = 69/271 (25%)
Query: 18 LSSPLLSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVP 77
+S P ++ R L+ + +P PP P ++LP +E P +L G +P
Sbjct: 41 VSRPAMTRIARNT-LVNAARKAPPPPKNNEDP------LWLPN-----TERPGWLDGSLP 88
Query: 78 GDYGYDPFGLSKKPD--------------------------------------------- 92
GD G+DP GLSK +
Sbjct: 89 GDRGFDPLGLSKPAEYLQFDVDQLDQNAAVNRAGRVIGQYDGGIDEVNTENSLSPYSDIF 148
Query: 93 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 152
+++ ELIH RWAML G I+ E W + G + LDG Y
Sbjct: 149 GLRRFRECELIHGRWAMLATLGAIVAE--------LSTGVPWDQAGKVELDG--ARYLNF 198
Query: 153 NIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLA-KDPDQFALLKVK 211
++P + + E++LVGGAE YR T DL+ +L+PGG FDPLG K +Q L+
Sbjct: 199 DLPFTVSQLTLLEVLLVGGAEIYRNTE-TDLDKRLYPGGTFDPLGFTTKSDEQTMRLREA 257
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 242
EIK+GRLAM A G +QA+ TGEG +ENL+
Sbjct: 258 EIKHGRLAMVAAFGCGVQAFTTGEGLIENLS 288
>gi|356532722|ref|XP_003534920.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 125
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 71/90 (78%), Gaps = 2/90 (2%)
Query: 165 EIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 222
+++L+G E YRI G ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 24 QVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFS 83
Query: 223 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 84 MFGFFVQAIVTGKGPLENLADHLADPVNNN 113
>gi|159478202|ref|XP_001697193.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
gi|60391855|sp|Q93WD2.3|CB29_CHLRE RecName: Full=Chlorophyll a-b binding protein CP29; AltName:
Full=Lhcbm4
gi|15430560|dbj|BAB64415.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|15430568|dbj|BAB64419.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|27542567|gb|AAO16494.1| CP29-like protein [Chlamydomonas reinhardtii]
gi|158274667|gb|EDP00448.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 280
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 109/221 (49%), Gaps = 57/221 (25%)
Query: 69 PEYLTGEVPGDYGYDPFGLSK------------------------------KPDDFS--- 95
PE+L G +PGD G+DP GLSK PD+ S
Sbjct: 60 PEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSEN 119
Query: 96 ------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 143
+++ ELIH RWAML G ++ EA W + G + LD
Sbjct: 120 RLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVS--------WVEAGKVELD 171
Query: 144 GNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPD 203
G +Y G ++P ++ + E++LVGGAE+YR + + E + +PGG FDPL LA + +
Sbjct: 172 G--ASYAGLSLPFSITQLIWIEVILVGGAEFYRNSE-TNPEKRCYPGGVFDPLKLASEDE 228
Query: 204 QFAL-LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243
+ A LK EIK+ RLAM + G+ +QA TGEG + +LAK
Sbjct: 229 ERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAK 269
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 102/207 (49%), Gaps = 34/207 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G DP GL++ P+ Y EL++ RWAMLG AG IPE G
Sbjct: 62 PSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMXIPEVLTSIGLIN 121
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GLDLE 184
P+ W+ D + YF + + + E +L E R + G +
Sbjct: 122 VPK--WY-------DAGKVEYFASSXTL-----FVIEFILFHYVELRRWQDIKYPGSVNQ 167
Query: 185 DKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
D + +PGG F+PL + + K KE+ NGRLAM A LGF +Q V
Sbjct: 168 DPIXKSYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNV 223
Query: 233 TGEGPVENLAKHLSDPFANNLLTVISG 259
TG+GP +NL +HLSDP+ N ++ + G
Sbjct: 224 TGKGPFDNLLQHLSDPWHNTIIQTLQG 250
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 115/210 (54%), Gaps = 31/210 (14%)
Query: 71 YLTGEVPGDYGYDPFGLS--KKPDDFSKYQAY---ELIHARWAMLGAAGFIIPEAFNKFG 125
YL G +PGDYG+DP GL + F Q E+I+ R+AMLGAAG I PE + G
Sbjct: 16 YLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRIG 75
Query: 126 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG---- 180
A+ WF++G + GN +Y+ P L + E+ L+G AE+ R +
Sbjct: 76 LIPQETAIPWFQSGVIPPVGN-YSYWAD--PYTLF---VLEMALMGFAEHRRAQDYYKPG 129
Query: 181 -------LDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 225
L LE L +PGGP F+ LG K+ + LKVKE+KNGRLAM A+LG
Sbjct: 130 SMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLG 189
Query: 226 FFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
+F QA TG GP +NL HL+DP NN+LT
Sbjct: 190 YFTQAIFTGVGPFQNLLDHLADPVHNNVLT 219
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 124/257 (48%), Gaps = 32/257 (12%)
Query: 23 LSSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGL---LDRSEIPEYLTGEVPGD 79
+S P R+ ++ S L K R+ GL S+ YL G +PGD
Sbjct: 18 VSRPARRSSVVVRSEGSEGSELAKV------ERVAKAGGLYQNFTSSQALGYLDGTLPGD 71
Query: 80 YGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGA--NCGPE 131
+G+DP GL P+ ++ AY E+IH RWAMLG AGF+ PE GA E
Sbjct: 72 FGFDPLGLCD-PEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPEVLATIGAIPASPEE 130
Query: 132 AVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG------LDLE- 184
AVWF++G + G Y+ + V A++ + + Y+ L LE
Sbjct: 131 AVWFRSGVIPPAGQYGAYWTDAYTLFWVEAIMMNFAELKRWQDYQSPGSQGKQYFLGLEA 190
Query: 185 ------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237
+ +PGG F + L L K P+ L+ EI+NGRLAM A LG F QA +T +GP
Sbjct: 191 VFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTNEIRNGRLAMIACLGCFGQAVMTTKGP 250
Query: 238 VENLAKHLSDPFANNLL 254
NL HL+DP +NN+L
Sbjct: 251 FANLLDHLADPISNNVL 267
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 105/204 (51%), Gaps = 28/204 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + +V ++ V + + I N G +D +
Sbjct: 119 APQ--WY-------DAGKSEYFASSSTLFVVEFILFXYVEI--RRWQDIKNPGSVNQDPI 167
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 168 FKSYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFLIQHNVTGK 223
Query: 236 GPVENLAKHLSDPFANNLLTVISG 259
GP +NL +HLSDP+ N ++ SG
Sbjct: 224 GPFDNLLQHLSDPWHNTIIQTFSG 247
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 106/219 (48%), Gaps = 36/219 (16%)
Query: 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 106
S+ +G +R ++ P ++ P +L G +PGD+G+DP LS P+ EL HAR
Sbjct: 32 SAEAGAERPVWYP----GKAPAP-HLDGSLPGDFGFDPLSLSADPEMRKWMVQAELQHAR 86
Query: 107 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 166
WAMLG AG + PE K G P V D T Y+ P+ + ++
Sbjct: 87 WAMLGVAGAVAPELLTKIGVADLPNWV---------DAGTYQYWAPAGPLFFI-----QM 132
Query: 167 VLVGGAEYYRIT----------------NGLDLE-DKLHPGGPFDPLGLAKDPDQFALLK 209
+ AE R N D D +PGG FD LG AKDP + LK
Sbjct: 133 AMFNWAEVRRWQDMKNPGSMNTDPLFGYNSNDTNTDVGYPGGLFDKLGYAKDPAKAKELK 192
Query: 210 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 248
+KEIKNGRLAM A LG Q TG+GPVENL H++ P
Sbjct: 193 LKEIKNGRLAMVAFLGICAQYVQTGQGPVENLFSHIASP 231
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 115/219 (52%), Gaps = 38/219 (17%)
Query: 70 EYLTGEVPGDYGYDPFGLSKKPDDFSK-------YQAYELIHARWAMLGAAGFIIPEAFN 122
YL G +PGD+G+DP GL S EL+HARWAMLGAAG + PE
Sbjct: 12 SYLDGTLPGDFGFDPLGLFDPSSGGSAGFLSQRWLHTAELMHARWAMLGAAGCLAPEYLA 71
Query: 123 KFGANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVG------GAE 173
P+A +WFKTG L +Y +P+ ++FAV ++V++G GAE
Sbjct: 72 H--EKVIPKATGLLWFKTGFLPQASAGFDY---GLPLGVLFAV--QMVMMGVAEGLRGAE 124
Query: 174 YY-----RITNGLDLEDKL---------HPGG-PFDPLGLAKDPDQFALLKVKEIKNGRL 218
Y R L LE + +PGG F+PLGL + P ++ EI++GRL
Sbjct: 125 YIAPGSLRNNKLLGLEKLIATTRAGSAAYPGGLMFNPLGLGEKPAAMREMQQAEIRHGRL 184
Query: 219 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257
AM A LG+ QA VTG GP +N +HL +P NN+L+++
Sbjct: 185 AMLACLGYAAQAVVTGRGPYDNWNRHLENPEENNVLSLL 223
>gi|209778961|gb|ACI87791.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 124
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 81/120 (67%), Gaps = 5/120 (4%)
Query: 131 EAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--D 185
EAVWFK G+ + L+Y G I + A+ A ++VL+G E YR+ G E D
Sbjct: 5 EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLD 64
Query: 186 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 245
L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL H
Sbjct: 65 PLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHF 124
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 109/203 (53%), Gaps = 28/203 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P+YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 122
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 VPK--WY-------DAGKSEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A P + A K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKSYSLPPNKCGYPGGIFNPLNFA--PTEEA--KEKELANGRLAMLAFLGFIVQHNVTGK 227
Query: 236 GPVENLAKHLSDPFANNLLTVIS 258
GP +NL +HL DP+ N ++ +S
Sbjct: 228 GPFDNLLQHLFDPWHNTIIQTLS 250
>gi|428230864|gb|AFY99054.1| chlorophyll binding protein, partial [Cyanea asplenifolia]
Length = 197
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 111/203 (54%), Gaps = 31/203 (15%)
Query: 81 GYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-W 134
G+DP GLS K+ AY E+I+ R+AMLGAAG I PE F K G A+ W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALPW 60
Query: 135 FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDL 183
F+TG + G + Y+ P L + E+ L+G AE+ R + L L
Sbjct: 61 FQTGVIPPAG-SYTYWAD--PYTLF---VFEMALMGFAEHRRFQDWYNPGSMGKQYFLGL 114
Query: 184 EDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
E L +PGGPF +PLG KD LK+KEIKNGRLAM A+LG+F+Q VTG
Sbjct: 115 EKGLAGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGV 174
Query: 236 GPVENLAKHLSDPFANNLLTVIS 258
GP +NL HL+DP NN+LT +
Sbjct: 175 GPFQNLLDHLADPVNNNVLTSLK 197
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 109/205 (53%), Gaps = 29/205 (14%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ G YF + + ++ +++ V + + I N G +D +
Sbjct: 123 VPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A + K KEI NGRL M A LGF +Q VTG+
Sbjct: 172 FKQYSLPAGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGK 226
Query: 236 GPVENLAKHLSDPFANNLLTVISGN 260
GP +NL +H+SDP+ N ++ + GN
Sbjct: 227 GPFDNLLQHISDPWHNTIVQTLGGN 251
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 115/215 (53%), Gaps = 34/215 (15%)
Query: 71 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 124
YL G +PGD+G++P GLS P+ ++ AY E+ + R AM+G G I PEA K
Sbjct: 60 YLDGTLPGDFGFNPLGLSD-PEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKV 118
Query: 125 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG--- 180
G A+ WF+ GA+ G T Y+ P L + E+ L+G AE+ R+ +
Sbjct: 119 GLVPPETAIPWFQAGAIPPAG-TYQYWAD--PYTLF---VFEMALIGFAEHRRLQDWYNP 172
Query: 181 --------LDLE-------DKLHPGGP-FDPLGLA-KDPDQFALLKVKEIKNGRLAMFAM 223
L LE D +PGGP F+PLG K + LK+KEIKNGRLAM A
Sbjct: 173 GSMGKQYFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLKEIKNGRLAMLAF 232
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258
LG LQA TG GP +NL HLSDP NN+LT +
Sbjct: 233 LGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSLK 267
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP L++ P++ + EL++ RWA LG AG ++PE G
Sbjct: 63 PNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGVAGMLLPEVLTNIGLIN 122
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL 187
P+ W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 123 VPK--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 188 ------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
+PGG F+PL A P + A K +E+ NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPPNEVGYPGGIFNPLNFA--PTEEA--KERELANGRLAMLAFLGFIVQHNVTGK 227
Query: 236 GPVENLAKHLSDPFANNLLTVISGN 260
GP +NL +HLSDP+ N ++ +SGN
Sbjct: 228 GPFDNLLQHLSDPWHNTIVQTLSGN 252
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 104/202 (51%), Gaps = 28/202 (13%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE +G
Sbjct: 63 PTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIIN 122
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN--------- 179
P+ W+ D YF + + ++ ++ V + + I N
Sbjct: 123 VPK--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 171
Query: 180 ----GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235
L D +PGG F+PL +P A + KEI NGRLAM A LGF +Q VTG+
Sbjct: 172 FKQYSLPPNDVGYPGGIFNPLNF--EPTLEA--REKEIANGRLAMLAFLGFIVQHNVTGK 227
Query: 236 GPVENLAKHLSDPFANNLLTVI 257
GP +N +H+SDP+ N ++ +
Sbjct: 228 GPFDNFMQHISDPWHNTIVQTL 249
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 125/239 (52%), Gaps = 41/239 (17%)
Query: 44 LTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQ 98
+ K+ P D + G+ D++ YL G +PGD+G+DP G+S P+ ++
Sbjct: 51 VVKAQPRSKDDLYLM--GVSDQNM--AYLDGTLPGDFGFDPLGMSD-PEGAGGFVNPQWL 105
Query: 99 AY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEA---VWFKTGALLLDGNTLNYFGKNI 154
AY E+IH RWAMLG AG + PE + A PE+ VWF +GA+ G T +Y+ +
Sbjct: 106 AYSEVIHGRWAMLGVAGIVAPEILGQ--AGLIPESTGLVWFTSGAIPPQG-TFDYWANPM 162
Query: 155 PI---NLVFAVIAEIVLVGGAEYYRITNGLDLEDKL--------------HPGGP-FDPL 196
I N+ AEI G +Y+ G E L +PGG F+
Sbjct: 163 TIFWVNMCMMNFAEIKR--GQDYWY--PGSQAEQPLMGWEKGFAGSGNPAYPGGKYFNFA 218
Query: 197 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
GL KD A ++ KEIKNGRLAM A LG +QA VTGEGP +N+ H++DPF N+L
Sbjct: 219 GLGKD--DMAKMQKKEIKNGRLAMMAFLGCMVQAVVTGEGPWKNICDHVADPFGANMLA 275
>gi|115769|sp|P12327.1|CB21_EUGGR RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|829262|emb|CAA29821.1| chlorophyll a/b protein (128 AA) [Euglena gracilis]
Length = 127
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 80/115 (69%), Gaps = 10/115 (8%)
Query: 159 VFAVIA-EIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 211
+ A++A +++L+G E YR N G DL D+L+PGGPFDPLGLA DPD F LKVK
Sbjct: 11 LLAILATQVLLMGAVEGYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFPELKVK 69
Query: 212 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 266
EIKNGRLAM MLGF+ QA VTGEGPVEN HL DP A+N LT + + APT
Sbjct: 70 EIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALV--TQFAPT 122
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 111/212 (52%), Gaps = 34/212 (16%)
Query: 71 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 125
YL G +PGD+G+DP GL + K+ Y E+IH RWAMLGAAG I PE
Sbjct: 57 YLDGTLPGDFGFDPLGLLDPVNSGGFVEPKWLQYSEVIHGRWAMLGAAGCIAPEILG--A 114
Query: 126 ANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
A PE VW+++G + G+ Y+ P + F EIV + AE R+ +
Sbjct: 115 AGLIPEKTNIVWYESGVIPPAGSYDGYWAD--PYTIFFI---EIVAMQFAELRRLQDFRY 169
Query: 181 ---------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L LE D +PGGPF + L K LK+KEIKNGRLAM AM
Sbjct: 170 PGSMGKQYFLGLEKIFAGSGDPAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAM 229
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
LG+ QA +T EGP +NL HL+DP NN+LT
Sbjct: 230 LGYGAQATLTREGPFQNLLDHLADPVNNNILT 261
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 103/207 (49%), Gaps = 34/207 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL+ P + Y EL + RWAM+G AG +IPE K G
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR------------ 176
P +W+ D + YF P + +F + E ++ E R
Sbjct: 119 AP--LWY-------DAGKVEYFA---PASTLFVI--EFLMFHYVEVRRWQDIKYPGSVNQ 164
Query: 177 --ITNGLDL--EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
I G L + +PGG F+PL + + K KE+ NGRLAM A LGF +Q+ V
Sbjct: 165 DPIFKGYSLPPNEVGYPGGIFNPLNFPANEE----YKEKELANGRLAMLAFLGFIIQSNV 220
Query: 233 TGEGPVENLAKHLSDPFANNLLTVISG 259
T +GP ENL HLSDP+ + ++ I G
Sbjct: 221 THQGPFENLLTHLSDPWHHTIVQSIQG 247
>gi|305377030|dbj|BAJ15878.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 125
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 164 AEIVLVGGAEYYRITNG--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 221
+++L+G E YRI G ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF
Sbjct: 23 CQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 82
Query: 222 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 252
+M GFF+QA VTG+GP+ENLA L+DP NN
Sbjct: 83 SMFGFFVQAIVTGKGPLENLADGLADPVNNN 113
>gi|149941244|emb|CAO02554.1| putative LHCII type III chlorophyll a/b binding protein [Vigna
unguiculata]
Length = 211
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 95/163 (58%), Gaps = 11/163 (6%)
Query: 51 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 110
GPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA+L
Sbjct: 53 GPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWALL 109
Query: 111 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIV 167
GA G I PE K+ E VWFK GA + L+Y G + + AV+ ++V
Sbjct: 110 GALGCITPEVLGKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVV 169
Query: 168 LVGGAEYYRITNGLD---LEDKLHPGGP-FDPLGLAKDPDQFA 206
L+G AE +RI NGLD + L+P G FDPLGLA DP FA
Sbjct: 170 LMGLAEGFRI-NGLDGVGEGNNLYPXGQYFDPLGLADDPTTFA 211
>gi|222424528|dbj|BAH20219.1| AT3G54890 [Arabidopsis thaliana]
Length = 159
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 93/164 (56%), Gaps = 12/164 (7%)
Query: 97 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL-LDGNTLNYFGKNIP 155
Y+ ELIH RWAML G ++PEA +G W K L G Y G +P
Sbjct: 1 YKESELIHCRWAMLAVPGILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVP 52
Query: 156 INLVFAVIA-EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 214
+ ++A E + + E+ R D E K +PGG FDPLG +KDP + LKVKEIK
Sbjct: 53 WGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIK 111
Query: 215 NGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANNLLTVI 257
NGRLA+ A +GF + Q+ G GP+ENLA HL+DP+ NN+ ++
Sbjct: 112 NGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 155
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 103/207 (49%), Gaps = 34/207 (16%)
Query: 69 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128
P YL G +PGD G+DP GL+ P + Y EL + RWAM+G AG +IPE K G
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR------------ 176
P +W+ D + YF P + +F + E ++ E R
Sbjct: 119 AP--LWY-------DAGKVEYFA---PASTLFVI--EFLMFHYVEVRRWQDIKYPGSVNQ 164
Query: 177 --ITNGLDL--EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 232
I G L + +PGG F+PL + + K KE+ NGRLAM A LGF +Q+ V
Sbjct: 165 DPIFKGYSLPPNEVGYPGGIFNPLNFPANEE----YKEKELANGRLAMLAFLGFIIQSNV 220
Query: 233 TGEGPVENLAKHLSDPFANNLLTVISG 259
T +GP ENL HLSDP+ + ++ I G
Sbjct: 221 THQGPFENLLTHLSDPWHHTIVQSIQG 247
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 109/212 (51%), Gaps = 34/212 (16%)
Query: 71 YLTGEVPGDYGYDPFGL---SKKPDDF---SKYQAYELIHARWAMLGAAGFIIPEAFNKF 124
YLTG +P DYG+DP GL K F + Q E+IHARWAMLGAAG I PE
Sbjct: 35 YLTGALPADYGFDPLGLLDPEGKGAGFVSPAWLQYSEVIHARWAMLGAAGCIAPEILATA 94
Query: 125 GA--NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-- 180
G E +WFK+G + G Y+ P +L F E++LV AE R +
Sbjct: 95 GVIPQTPDEVIWFKSGVIPPAGVYDKYWLD--PYSLFFI---EVILVQFAELRRWQDFRN 149
Query: 181 ---------LDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223
L LE+ L +PGG F + L K LK KE+KNGRLAM A+
Sbjct: 150 PGSQGKQYFLGLEEVLKGSGDPSYPGGQFFNLFNLGKS--DLKELKTKELKNGRLAMLAV 207
Query: 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 255
G+ QA +T EGP +NL HLSDP +N+LT
Sbjct: 208 FGYGAQAVITAEGPFKNLTDHLSDPTGHNILT 239
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.141 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,025,428,463
Number of Sequences: 23463169
Number of extensions: 249589403
Number of successful extensions: 884729
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 304
Number of HSP's that attempted gapping in prelim test: 877330
Number of HSP's gapped (non-prelim): 2974
length of query: 267
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 127
effective length of database: 9,074,351,707
effective search space: 1152442666789
effective search space used: 1152442666789
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)