Query 024482
Match_columns 267
No_of_seqs 238 out of 1175
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 04:56:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00025 photosystem II light 100.0 1.8E-64 3.8E-69 460.4 18.8 215 45-266 42-261 (262)
2 PLN00187 photosystem II light- 100.0 1.9E-62 4.1E-67 451.2 18.3 202 42-258 40-285 (286)
3 PLN00171 photosystem light-ha 100.0 3.1E-61 6.7E-66 448.1 18.0 214 42-258 96-323 (324)
4 PLN00048 photosystem I light h 100.0 7.4E-60 1.6E-64 430.5 16.3 229 11-258 5-260 (262)
5 PLN00098 light-harvesting comp 100.0 2.1E-59 4.6E-64 428.1 18.2 196 45-259 53-266 (267)
6 PLN00101 Photosystem I light-h 100.0 1E-59 2.3E-64 426.6 15.6 190 46-258 45-250 (250)
7 PLN00097 photosystem I light h 100.0 5E-59 1.1E-63 420.7 15.1 190 47-254 37-243 (244)
8 PLN00099 light-harvesting comp 100.0 4.7E-58 1E-62 414.8 14.6 196 50-259 40-238 (243)
9 PLN00147 light-harvesting comp 100.0 1.6E-57 3.5E-62 413.0 16.4 196 46-259 37-251 (252)
10 PLN00100 light-harvesting comp 100.0 6.6E-55 1.4E-59 393.8 13.9 179 49-257 30-209 (246)
11 PLN00170 photosystem II light- 100.0 5E-48 1.1E-52 350.9 14.2 174 51-242 48-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 6.9E-40 1.5E-44 277.1 11.3 147 68-231 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 8.3E-39 1.8E-43 284.3 12.3 154 67-238 45-207 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 8.6E-34 1.9E-38 251.1 12.1 142 82-239 47-199 (202)
15 PLN00098 light-harvesting comp 99.6 2.1E-15 4.6E-20 138.7 6.7 70 185-254 76-153 (267)
16 PLN00101 Photosystem I light-h 99.6 3.6E-15 7.9E-20 136.0 5.9 54 185-238 67-121 (250)
17 PLN00147 light-harvesting comp 99.5 1.7E-14 3.7E-19 131.8 5.7 52 185-236 59-111 (252)
18 PLN00170 photosystem II light- 99.5 6.8E-14 1.5E-18 127.9 5.7 52 185-236 71-123 (255)
19 PLN00097 photosystem I light h 99.4 1E-13 2.2E-18 126.2 5.6 53 185-237 58-111 (244)
20 PLN00171 photosystem light-ha 99.4 1.2E-13 2.5E-18 129.8 5.4 53 185-237 124-177 (324)
21 PLN00025 photosystem II light 99.4 1.8E-13 3.9E-18 125.7 5.6 52 185-236 67-119 (262)
22 PLN00048 photosystem I light h 99.4 9E-14 2E-18 127.8 3.4 53 73-125 186-238 (262)
23 PLN00100 light-harvesting comp 99.4 2.9E-13 6.3E-18 123.2 5.3 49 185-233 49-98 (246)
24 PLN00089 fucoxanthin-chlorophy 99.4 2E-13 4.2E-18 122.0 3.9 52 74-125 153-205 (209)
25 PLN00187 photosystem II light- 99.4 3.7E-13 8.1E-18 124.9 3.7 53 73-125 211-263 (286)
26 PLN00099 light-harvesting comp 99.3 8.6E-13 1.9E-17 120.2 4.8 50 185-234 58-108 (243)
27 PF00504 Chloroa_b-bind: Chlor 99.3 4.9E-12 1.1E-16 107.0 5.7 50 185-235 6-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.0 1.8E-10 3.9E-15 102.6 3.4 46 74-123 142-194 (202)
29 PHA02337 putative high light i 98.2 1.8E-06 3.8E-11 56.6 3.3 29 209-237 3-31 (35)
30 PLN00084 photosystem II subuni 98.1 2.9E-06 6.3E-11 73.9 3.4 47 203-249 130-177 (214)
31 PLN00014 light-harvesting-like 97.5 8.2E-05 1.8E-09 67.5 3.4 36 208-243 159-194 (250)
32 PHA02337 putative high light i 97.1 0.00027 5.8E-09 46.4 1.3 28 98-125 3-30 (35)
33 PLN00014 light-harvesting-like 95.6 0.0036 7.8E-08 57.1 0.3 29 97-125 159-187 (250)
34 PLN00084 photosystem II subuni 92.5 0.05 1.1E-06 47.8 0.8 35 92-126 130-165 (214)
35 PLN02449 ferrochelatase 47.0 14 0.00031 37.4 2.4 22 218-239 463-484 (485)
36 PHA00003 B internal scaffoldin 20.2 1.4E+02 0.0031 24.6 3.5 36 185-223 41-77 (120)
No 1
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=1.8e-64 Score=460.37 Aligned_cols=215 Identities=53% Similarity=0.916 Sum_probs=187.8
Q ss_pred CCCCCCCCCcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccC
Q 024482 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124 (267)
Q Consensus 45 ~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~ 124 (267)
+.+.||+++|++|| |+++ .++|+||||++||||||||+||++||++++|||++|||||||||||++||++||++++.
T Consensus 42 ~~~~~~g~~R~~~l--~p~~-~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~ 118 (262)
T PLN00025 42 SGSIWYGPDRPKYL--GPFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKN 118 (262)
T ss_pred ccccccCCCCcccc--CCcc-cCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcC
Confidence 46789999999999 4555 68999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCchhhhccccccCCCcccccCCCchh---HHHHHHHHHHHHHhhhhheeeeccc--CCCCCCCCCCCCCCCCCC
Q 024482 125 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLA 199 (267)
Q Consensus 125 G~~~~p~~~w~~aG~~~~~~~~l~~~g~~~pi---~~~~~~~~qv~l~g~~E~~r~~~g~--~~~d~~~PGd~FDPLgl~ 199 (267)
|..+. +..||++|..++++++++|++++..+ .+...+++|+++||++|.+|+.++. ...|++||||+||||||.
T Consensus 119 g~~~~-~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~ 197 (262)
T PLN00025 119 GVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLA 197 (262)
T ss_pred CcCcC-cccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCCcccccccCcCCcccCCccccC
Confidence 66543 45899999888888889999987543 2233457799999999999987632 123568999999999999
Q ss_pred CChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhHhhhCCCcchhHHHhhhcccccCCC
Q 024482 200 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 266 (267)
Q Consensus 200 ~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~~~~~~~~~ 266 (267)
+|+++++++|+||||||||||+||+||++|+++||++|++||.+|++||+|||++++.. .++|.
T Consensus 198 ~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~~---~~~~~ 261 (262)
T PLN00025 198 DDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYAT---NFVPG 261 (262)
T ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhhh---hcCCC
Confidence 99999999999999999999999999999999999999999999999999999998743 35553
No 2
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=1.9e-62 Score=451.22 Aligned_cols=202 Identities=42% Similarity=0.776 Sum_probs=177.4
Q ss_pred CCCCCCCCCCCCcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChhh----------------------------
Q 024482 42 PPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD---------------------------- 93 (267)
Q Consensus 42 ~~~~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~---------------------------- 93 (267)
.....+++|+++|++|+|+ .++|+||||++||||||||+||+++|+.
T Consensus 40 ~~~~~~~~~~~~r~~w~p~-----~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (286)
T PLN00187 40 KAKKKSSKVGADRPLWFPG-----AKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEAS 114 (286)
T ss_pred ccccCccCCCCCccccCCC-----CCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccc
Confidence 3334678999999999997 7899999999999999999999999885
Q ss_pred ---------------HHHHHHhhhhhhhhhhhhcccchhhhhhccCCCCCCCCchhhhccccccCCCcccccCCCchhHH
Q 024482 94 ---------------FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 158 (267)
Q Consensus 94 ---------------~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G~~~~p~~~w~~aG~~~~~~~~l~~~g~~~pi~~ 158 (267)
++||||+|||||||||||++||++||++++ ..|+++|...+.++ ..|++++.++.+
T Consensus 115 ~~~~~~~~p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~G--------~~W~~aG~~~~~~g-~~y~g~~~p~~~ 185 (286)
T PLN00187 115 EIKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALTG--------VTWQDAGKVELVDG-SSYLGQPLPFSI 185 (286)
T ss_pred cccccccCcchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhccC--------Cccccccccccccc-ccccccccchhH
Confidence 699999999999999999999999999742 25999997654333 358887766655
Q ss_pred HHHHHHHHHHHhhhhheeeecccCCCCCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcc
Q 024482 159 VFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237 (267)
Q Consensus 159 ~~~~~~qv~l~g~~E~~r~~~g~~~~d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gP 237 (267)
..++++|+++||++|.+|..+. +..+..||||+ ||||||.+|+++++++|++|||||||||+|++||++|+++||++|
T Consensus 186 ~~l~~iqvllmG~~E~~R~~~~-~~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GP 264 (286)
T PLN00187 186 TTLIWIEVLVIGYIEFQRNAEL-DPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGP 264 (286)
T ss_pred HHHHHHHHHHHHHHHhhhccCC-CCCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCh
Confidence 5667889999999999997652 23466799997 999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhCCCcchhHHHhhh
Q 024482 238 VENLAKHLSDPFANNLLTVIS 258 (267)
Q Consensus 238 l~nL~~~ladP~~~n~~~~~~ 258 (267)
++||.+|++||+|||+++++.
T Consensus 265 i~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 265 LNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred HHHHHHHhcCcccccHHHhcc
Confidence 999999999999999999875
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=3.1e-61 Score=448.09 Aligned_cols=214 Identities=49% Similarity=0.779 Sum_probs=184.8
Q ss_pred CCCCCCCCCCCCcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhh
Q 024482 42 PPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 121 (267)
Q Consensus 42 ~~~~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~ 121 (267)
.+.+.+.||+++|++|+|+.+ .++|+||||++|||||||||||++|+++++|||++|||||||||||++|+++||++
T Consensus 96 ~~~~~~~~~g~~R~~wl~~~~---~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l 172 (324)
T PLN00171 96 KARNESFWYGEERPRWLGPIP---YDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVL 172 (324)
T ss_pred hhcccCcccCCCCccccCCCC---CCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHh
Confidence 345678899999999996432 37999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCchhhhccccccCCCcccccCCCch-----hHHHHHHHHHHHHHhhhhheeeeccc--------CCCCCCC
Q 024482 122 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIVLVGGAEYYRITNGL--------DLEDKLH 188 (267)
Q Consensus 122 ~~~G~~~~p~~~w~~aG~~~~~~~~l~~~g~~~p-----i~~~~~~~~qv~l~g~~E~~r~~~g~--------~~~d~~~ 188 (267)
++.|....++++||++|...+++..++|++.+.. ..+..++++|+++|+++|++|+.+-. ..+|..|
T Consensus 173 ~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gY 252 (324)
T PLN00171 173 DLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINY 252 (324)
T ss_pred ccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccC
Confidence 8876543345689999987777777788776642 12344568899999999999876511 1235568
Q ss_pred CCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhHhhhCCCcchhHHHhhh
Q 024482 189 PGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258 (267)
Q Consensus 189 PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~ 258 (267)
|||. |||||+.+|+++++++|++|||||||||+||+||++|+.+||++|++||.+|++||+|||+++++.
T Consensus 253 PGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 253 PGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred CcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 9987 999999999999999999999999999999999999999999999999999999999999999874
No 4
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=7.4e-60 Score=430.52 Aligned_cols=229 Identities=40% Similarity=0.683 Sum_probs=186.1
Q ss_pred hhhhhhhccCCCC-CCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCC
Q 024482 11 QVHQTLLLSSPLL-SSPRRKPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK 89 (267)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~ 89 (267)
|..+..+++++.. ++++|+++|||++.. ...+|+++|++|+|+ .++|+||||++|||||||||||++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~~w~p~-----~~~P~yLdG~lPGD~GFDPlGL~~ 72 (262)
T PLN00048 5 QTARRALSSSAARSSSAKKARFVVRAEAT-------PPAKQGADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLSD 72 (262)
T ss_pred HHHHHHhcccccccccccccceeEecccC-------CCCCCCCCCceecCC-----CCCccccCCCCCCccCCCccccCC
Confidence 4445555555553 455666777887642 234668899999986 789999999999999999999984
Q ss_pred Chh------hHHHHHHhhhhhhhhhhhhcccchhhhhhccCCCCCC-CCchhhhccccccCCCcccccCCCchhHHHHHH
Q 024482 90 KPD------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG-PEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 162 (267)
Q Consensus 90 ~~~------~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G~~~~-p~~~w~~aG~~~~~~~~l~~~g~~~pi~~~~~~ 162 (267)
|+ +.+|+|++||+||||||||++||++||++++.|.... ....|+++|+. ...+..+|++++. ..+
T Consensus 73 -p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~-~~~~~~~y~~~p~-----~l~ 145 (262)
T PLN00048 73 -PEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVI-PPAGTYDYWADPY-----TLF 145 (262)
T ss_pred -ccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCcccccccccccccccc-ccccccccccchh-----HHH
Confidence 43 5789999999999999999999999999987765322 12369999863 2334567877642 235
Q ss_pred HHHHHHHhhhhheeeec----cc--------------CCCCCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHH
Q 024482 163 IAEIVLVGGAEYYRITN----GL--------------DLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223 (267)
Q Consensus 163 ~~qv~l~g~~E~~r~~~----g~--------------~~~d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi 223 (267)
++|+++||++|.+|+++ |. +..|..||||+ ||||||.+|+|+++++|+||||||||||+|+
T Consensus 146 ~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~ 225 (262)
T PLN00048 146 VLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAI 225 (262)
T ss_pred HHHHHHhhheeeeccccccCCCcccccccccchhccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHh
Confidence 67889999999998765 10 00256799998 9999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcchhhhHhhhCCCcchhHHHhhh
Q 024482 224 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258 (267)
Q Consensus 224 ~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~ 258 (267)
+||++|+++||++|++||.+|++||+|||++++++
T Consensus 226 ~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~~ 260 (262)
T PLN00048 226 LGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLK 260 (262)
T ss_pred hhHhhhhhhcCCCHHHHHHHHhcCccccccccccc
Confidence 99999999999999999999999999999999875
No 5
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=2.1e-59 Score=428.07 Aligned_cols=196 Identities=42% Similarity=0.781 Sum_probs=170.0
Q ss_pred CCCCCCCCCcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccC
Q 024482 45 TKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124 (267)
Q Consensus 45 ~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~ 124 (267)
....+|+++|++|+|+ .++|+||||++|||+||||+||++|+++++|||++|||||||||||++|+++||++++.
T Consensus 53 ~~~~~~~~~r~~w~Pg-----~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~ 127 (267)
T PLN00098 53 SVCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERL 127 (267)
T ss_pred cccccCCCCccccCCC-----CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 4567899999999997 78999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhheeeecc----c-C-----------CCCCCC
Q 024482 125 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----L-D-----------LEDKLH 188 (267)
Q Consensus 125 G~~~~p~~~w~~aG~~~~~~~~l~~~g~~~pi~~~~~~~~qv~l~g~~E~~r~~~g----~-~-----------~~d~~~ 188 (267)
|... ...|+++|.. +|++.+. .+.++|+++||++|.+|+.+- . + ..|.+|
T Consensus 128 g~~~--~~~w~~Ag~~-------~~~~~~~-----~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~y 193 (267)
T PLN00098 128 GFIE--NFSWYDAGAR-------EYFADPT-----TLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGY 193 (267)
T ss_pred Cccc--ccccccccch-------hhccCch-----HHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCC
Confidence 6532 3469998753 3555442 235679999999999887541 0 0 114579
Q ss_pred CCCC-CCCCCCCC-ChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhHhhhCCCcchhHHHhhhc
Q 024482 189 PGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 259 (267)
Q Consensus 189 PGd~-FDPLgl~~-dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~~ 259 (267)
|||+ ||||||.+ |+++++++|+||||||||||+||+||++|+.+||++|++||.+|++||++||+++++++
T Consensus 194 PGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 194 PGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred CCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccC
Confidence 9999 99999975 89999999999999999999999999999999999999999999999999999999864
No 6
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=1e-59 Score=426.61 Aligned_cols=190 Identities=40% Similarity=0.749 Sum_probs=164.1
Q ss_pred CCCCCCCCcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCC
Q 024482 46 KSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125 (267)
Q Consensus 46 ~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G 125 (267)
.+.++.++|++|+|+ .+.|+||||++|||+||||+||++|+++++|||++||+||||||||++|+++||++++.|
T Consensus 45 ~~~~~~~~r~~W~P~-----~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g 119 (250)
T PLN00101 45 RSFKVEAKKGEWLPG-----LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 119 (250)
T ss_pred ccccccccccccCCC-----CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCC
Confidence 566778999999996 789999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhheeeec----cc------------CCCCCCCC
Q 024482 126 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL------------DLEDKLHP 189 (267)
Q Consensus 126 ~~~~p~~~w~~aG~~~~~~~~l~~~g~~~pi~~~~~~~~qv~l~g~~E~~r~~~----g~------------~~~d~~~P 189 (267)
.... +.|+++|+. .|++.+. ..+++|+++|+++|.+|+++ |. ..+|..||
T Consensus 120 ~~~~--p~w~~ag~~-------~~~~~~~-----~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YP 185 (250)
T PLN00101 120 IINA--PQWYDAGKA-------EYFASSS-----TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYP 185 (250)
T ss_pred CcCC--Cccccccch-------hhcccch-----HHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCC
Confidence 5433 469998753 3554332 23466888999999999764 11 01255799
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhHhhhCCCcchhHHHhhh
Q 024482 190 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 258 (267)
Q Consensus 190 Gd~FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~ 258 (267)
||.||||||+++ +++|+||||||||||+||+||++|+++||++|++||.+|++||+||||++++|
T Consensus 186 GG~FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~~ 250 (250)
T PLN00101 186 GGIFNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250 (250)
T ss_pred CCccCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhcC
Confidence 999999999875 37899999999999999999999999999999999999999999999999975
No 7
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=5e-59 Score=420.68 Aligned_cols=190 Identities=38% Similarity=0.605 Sum_probs=162.7
Q ss_pred CCCCCCCcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCCC
Q 024482 47 SSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126 (267)
Q Consensus 47 ~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G~ 126 (267)
+.-.+++|++|+|+ .++|+||||++||||||||+||++|+++++|||++||+||||||||++||++||++++.|.
T Consensus 37 ~~~~~~~R~~w~Pg-----~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 37 AVAAAADRPTWLPG-----KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred ecccCCCCcccCCC-----CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 33456899999996 6899999999999999999999999999999999999999999999999999999988775
Q ss_pred CCCCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhheeeeccc-----------------CCCCCCCC
Q 024482 127 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL-----------------DLEDKLHP 189 (267)
Q Consensus 127 ~~~p~~~w~~aG~~~~~~~~l~~~g~~~pi~~~~~~~~qv~l~g~~E~~r~~~g~-----------------~~~d~~~P 189 (267)
.. ...||++|+.. .|+.... ..+.+|+++|+++|.+|+.+-. ...|..||
T Consensus 112 ~~--~p~W~~Ag~~~------~~~~~~~-----~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYP 178 (244)
T PLN00097 112 AD--LPNWIDAAKWD------GYWAGAG-----PLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYP 178 (244)
T ss_pred cc--CCccccCCcch------hccccch-----hHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCC
Confidence 33 24799998541 1332211 2346688889999999876410 01244699
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhHhhhCCCcchhHH
Q 024482 190 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 254 (267)
Q Consensus 190 Gd~FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~ 254 (267)
||.||||||.+|+++++++|+||||||||||+|++||++|+++||+||++||.+|++||+|||++
T Consensus 179 gg~FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 179 KGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred CCCCCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999986
No 8
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=4.7e-58 Score=414.77 Aligned_cols=196 Identities=41% Similarity=0.764 Sum_probs=167.2
Q ss_pred CCCCcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCCCCCC
Q 024482 50 SGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 129 (267)
Q Consensus 50 ~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G~~~~ 129 (267)
+..+|..|+|+ .++|+||||++|||+||||+||++++++++|||++|||||||||||++||++||+++.
T Consensus 40 ~~~~~~~w~P~-----~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~------ 108 (243)
T PLN00099 40 RVTMSADWMPG-----QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL------ 108 (243)
T ss_pred cccccccccCC-----CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc------
Confidence 34667889986 7899999999999999999999999999999999999999999999999999998752
Q ss_pred CCchhhhcccc-ccCCCcccccCCCchhH-HHHHHHHHHHHHhhhhheeeecccCCCCCCCCCCCCCCCCCCCChhHHHH
Q 024482 130 PEAVWFKTGAL-LLDGNTLNYFGKNIPIN-LVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFAL 207 (267)
Q Consensus 130 p~~~w~~aG~~-~~~~~~l~~~g~~~pi~-~~~~~~~qv~l~g~~E~~r~~~g~~~~d~~~PGd~FDPLgl~~dpe~~~~ 207 (267)
..|++++.. .++++..+|++++.++. +..++++|+++||++|.+|.... +.+++.||||.||||||.+|++++++
T Consensus 109 --~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~-~~~~~~yPGd~FDPlGl~kd~~~~~~ 185 (243)
T PLN00099 109 --GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKFEE 185 (243)
T ss_pred --CCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccC-CCCCCcCCCCcCCcccccCCHHHHHH
Confidence 147776642 34455566777765542 34456789999999999886532 22356899999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh-hhcCCcchhhhHhhhCCCcchhHHHhhhc
Q 024482 208 LKVKEIKNGRLAMFAMLGFFLQA-YVTGEGPVENLAKHLSDPFANNLLTVISG 259 (267)
Q Consensus 208 ~k~kELKNGRLAMlAi~G~~~Q~-~vtG~gPl~nL~~~ladP~~~n~~~~~~~ 259 (267)
+|+|||||||||||||+||++|+ .+||++|++||.+|++||+|||+++.++.
T Consensus 186 ~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~~ 238 (243)
T PLN00099 186 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238 (243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeecc
Confidence 99999999999999999999999 57999999999999999999999998865
No 9
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=1.6e-57 Score=413.00 Aligned_cols=196 Identities=40% Similarity=0.708 Sum_probs=167.0
Q ss_pred CCCCCCCCcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCC
Q 024482 46 KSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125 (267)
Q Consensus 46 ~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G 125 (267)
....++++|++|+|+ .++|+||||++|||+||||+||++|+++++|||++|||||||||||++|+++||+++..|
T Consensus 37 ~~~~~~~~R~~wlP~-----~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 37 INPVVAQERPTWLPG-----LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CcccCCCCccccCCC-----CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 345778999999986 689999999999999999999999999999999999999999999999999999988766
Q ss_pred CCCCCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhheeeecc----c--------------CCCCCC
Q 024482 126 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----L--------------DLEDKL 187 (267)
Q Consensus 126 ~~~~p~~~w~~aG~~~~~~~~l~~~g~~~pi~~~~~~~~qv~l~g~~E~~r~~~g----~--------------~~~d~~ 187 (267)
... .+.|+++|...++ +... ...+++|+++||++|.+|+.+- . ...++.
T Consensus 112 ~~~--~p~w~~ag~~~~~------~~~~-----~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~ 178 (252)
T PLN00147 112 IRN--LPVWYEAGAVKFE------FAST-----RTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPG 178 (252)
T ss_pred CcC--Ccchhhcccchhc------cccc-----hHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCC
Confidence 533 2469988754321 1111 1345778889999999886431 0 012356
Q ss_pred CCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhHhhhCCCcchhHHHhhhc
Q 024482 188 HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 259 (267)
Q Consensus 188 ~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~~ 259 (267)
||||+ ||||||.+|+++++++|+||||||||||+||+||++|+++||++|++||.+|++||+||||+++++.
T Consensus 179 yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~ 251 (252)
T PLN00147 179 YPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSH 251 (252)
T ss_pred CcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcC
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999865
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=6.6e-55 Score=393.78 Aligned_cols=179 Identities=34% Similarity=0.568 Sum_probs=152.2
Q ss_pred CCCCCcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCCCCC
Q 024482 49 PSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 128 (267)
Q Consensus 49 ~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G~~~ 128 (267)
-...+|++|+|+ .+.|+||||++||||||||+||++++++++|||++|||||||||||++|+++||+++.
T Consensus 30 ~~~~~r~~W~P~-----~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~----- 99 (246)
T PLN00100 30 VAARARPMWYPG-----ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL----- 99 (246)
T ss_pred cccCCCcccCCC-----CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc-----
Confidence 346788999986 7899999999999999999999999999999999999999999999999999998652
Q ss_pred CCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhheeeecccCCCCCCCCCCC-CCCCCCCCChhHHHH
Q 024482 129 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFAL 207 (267)
Q Consensus 129 ~p~~~w~~aG~~~~~~~~l~~~g~~~pi~~~~~~~~qv~l~g~~E~~r~~~g~~~~d~~~PGd~-FDPLgl~~dpe~~~~ 207 (267)
+.|+++|... |..+ ...++++|+++||++|.+|+.+-...++..+||++ |||||+.+ ++
T Consensus 100 ---P~w~~ag~~~-------~~~~-----~~~l~~iqill~g~~E~~r~~~~~~~g~~~~pg~~~FDPLGl~~-----~~ 159 (246)
T PLN00100 100 ---PKFWEAGAEK-------YGLD-----LQTLVLIQVVVMAVLEAARYRGFMKTGESGVLSFFPFDPTGMDS-----PE 159 (246)
T ss_pred ---cchhhcchhh-------hccc-----hhHHHHHHHHHHHHHhhhcccccccccccCCCCCCCCCcccccH-----HH
Confidence 2488876532 2111 12345779999999999987753222345578888 99999963 57
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhHhhhCCCcchhHHHhh
Q 024482 208 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 257 (267)
Q Consensus 208 ~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~ 257 (267)
+|+||||||||||+||+||++|+++||++|++||.+|++||+|||++++.
T Consensus 160 ~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~ 209 (246)
T PLN00100 160 MKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSS 209 (246)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCC
Confidence 99999999999999999999999999999999999999999999999863
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=5e-48 Score=350.86 Aligned_cols=174 Identities=36% Similarity=0.619 Sum_probs=140.8
Q ss_pred CCCcccccCcCc-CCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCCCCCC
Q 024482 51 GPDRRIFLPEGL-LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 129 (267)
Q Consensus 51 ~~~r~~~lp~g~-~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G~~~~ 129 (267)
..+|+.|+|+-- -+....|+||||++||||||||+||++|+++++|||++||+||||||||++||++||+++.
T Consensus 48 ~~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g------ 121 (255)
T PLN00170 48 AQPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG------ 121 (255)
T ss_pred cCCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC------
Confidence 456778887410 0012579999999999999999999999999999999999999999999999999998752
Q ss_pred CCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhheeeeccc----------------------CCCCCC
Q 024482 130 PEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL----------------------DLEDKL 187 (267)
Q Consensus 130 p~~~w~~aG~~~~~~~~l~~~g~~~pi~~~~~~~~qv~l~g~~E~~r~~~g~----------------------~~~d~~ 187 (267)
..||++|... .+.. +. .+..++.+|+++||++|.+|+++.. ..++..
T Consensus 122 --~~w~~aG~~~------~~~~-p~--~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~ 190 (255)
T PLN00170 122 --IPWFEAGADP------GAIA-PF--SFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQG 190 (255)
T ss_pred --CChhhCCccc------cccC-cc--chHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCCcc
Confidence 2599998641 1111 11 2234457899999999999986521 012456
Q ss_pred CCCCC-CCCCCCCC---------ChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhH
Q 024482 188 HPGGP-FDPLGLAK---------DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 242 (267)
Q Consensus 188 ~PGd~-FDPLgl~~---------dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL~ 242 (267)
||||. ||||||.+ |+++++++|+||||||||||+|++||++|+ .||++|++||.
T Consensus 191 yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 191 YPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred cCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 99997 99999985 789999999999999999999999999999 79999999984
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=6.9e-40 Score=277.06 Aligned_cols=147 Identities=41% Similarity=0.692 Sum_probs=114.5
Q ss_pred CCCCCCCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCCCCC--CCCchhhhccccccCCC
Q 024482 68 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC--GPEAVWFKTGALLLDGN 145 (267)
Q Consensus 68 ~P~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G~~~--~p~~~w~~aG~~~~~~~ 145 (267)
+|++|||+++||+||||+||++++ +++|+|++||||||+||||++|++++|++++++... .....|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 589999999999999999999986 999999999999999999999999999997754311 11122544320
Q ss_pred cccccCCCchhHHHHHHH-HHHHHHhhhhheeeecccC-----CCCCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHH
Q 024482 146 TLNYFGKNIPINLVFAVI-AEIVLVGGAEYYRITNGLD-----LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRL 218 (267)
Q Consensus 146 ~l~~~g~~~pi~~~~~~~-~qv~l~g~~E~~r~~~g~~-----~~d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRL 218 (267)
+ +. ...++ ..+++++++|.++...... ..+..+|||+ |||+|+.+|+++++++|++|||||||
T Consensus 74 -~-----~~----~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRl 143 (156)
T PF00504_consen 74 -I-----PV----PAAGWAQILLFIGALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRL 143 (156)
T ss_dssp -S-----SS----HSHHHHHHHHHHHHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHH
T ss_pred -h-----hh----hhHHHHHHHHHHhHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 0 11 11233 3355689999987665311 2356899998 99999998999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 024482 219 AMFAMLGFFLQAY 231 (267)
Q Consensus 219 AMlAi~G~~~Q~~ 231 (267)
|||||+|+++|+.
T Consensus 144 AMla~~g~~~~e~ 156 (156)
T PF00504_consen 144 AMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999983
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=8.3e-39 Score=284.26 Aligned_cols=154 Identities=30% Similarity=0.391 Sum_probs=115.7
Q ss_pred CCCCCCCCCCCCCCCcccCCCCC-ChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCCCCC--CCCchhhhccccccC
Q 024482 67 EIPEYLTGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC--GPEAVWFKTGALLLD 143 (267)
Q Consensus 67 ~~P~~l~G~~pGd~gfDPlgl~~-~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G~~~--~p~~~w~~aG~~~~~ 143 (267)
+.|..|+|. .||++|||+||++ ++++++|||++||||||+||||++|+++||+++.+|... ...+.|+.+.
T Consensus 45 ~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~----- 118 (209)
T PLN00089 45 AKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAH----- 118 (209)
T ss_pred cCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHH-----
Confidence 456689999 9999999999986 567899999999999999999999999999876655311 0000111110
Q ss_pred CCcccccCCCchhHHHHH-HHHHHHH-Hhhhhheeeecc--cCCCCCCCCCCC-CCCCCCC-CChhHHHHHHHHHHhhhH
Q 024482 144 GNTLNYFGKNIPINLVFA-VIAEIVL-VGGAEYYRITNG--LDLEDKLHPGGP-FDPLGLA-KDPDQFALLKVKEIKNGR 217 (267)
Q Consensus 144 ~~~l~~~g~~~pi~~~~~-~~~qv~l-~g~~E~~r~~~g--~~~~d~~~PGd~-FDPLgl~-~dpe~~~~~k~kELKNGR 217 (267)
+ .+... .++|+++ +|++|....... ...++.++|||+ ||||||. +|+++++++|++||||||
T Consensus 119 ----~--------~~~~~g~~~Qi~~~ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGR 186 (209)
T PLN00089 119 ----D--------ALLKSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGR 186 (209)
T ss_pred ----H--------hhcccccHHHHHHHHHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhH
Confidence 0 01111 2457764 899995322111 112345799999 9999995 689999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcch
Q 024482 218 LAMFAMLGFFLQAYVTGEGPV 238 (267)
Q Consensus 218 LAMlAi~G~~~Q~~vtG~gPl 238 (267)
|||+||+||++|+++||++.+
T Consensus 187 lAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 187 LAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999875
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=8.6e-34 Score=251.08 Aligned_cols=142 Identities=20% Similarity=0.295 Sum_probs=102.1
Q ss_pred cccCCCCC--ChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCCCCCCCCchhhhccccccCCCcccccCCCchh---
Q 024482 82 YDPFGLSK--KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI--- 156 (267)
Q Consensus 82 fDPlgl~~--~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G~~~~p~~~w~~aG~~~~~~~~l~~~g~~~pi--- 156 (267)
|||+||++ |+++++|||++|||||||||||++||+++++..+++.........+ .+.+.++
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~--------------~~~p~~~~a~ 112 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSF--------------SDIPNGFAAL 112 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccc--------------cccccchhhh
Confidence 99999974 6899999999999999999999999999997433321110000111 1111110
Q ss_pred -HHHHHHHHHHHH-HhhhhheeeecccCCCCCCCCCCC-CC--CCCCCC-ChhHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 024482 157 -NLVFAVIAEIVL-VGGAEYYRITNGLDLEDKLHPGGP-FD--PLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQA 230 (267)
Q Consensus 157 -~~~~~~~~qv~l-~g~~E~~r~~~g~~~~d~~~PGd~-FD--PLgl~~-dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~ 230 (267)
.+....++|+++ +|++|.++..+-. +++++|||+ ++ +|||.. |+++++++|+|||||||||||||+||++|+
T Consensus 113 ~~vp~~g~~qi~~~ig~~E~~~~~~~~--~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe 190 (202)
T PLN00120 113 DAIPTAGLLQILAFIGFLELAVMKDIT--GEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHE 190 (202)
T ss_pred hhcchhHHHHHHHHHHHHHHHhhcccc--cCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122345778765 8999987654311 135789975 33 566654 789999999999999999999999999999
Q ss_pred hhcCCcchh
Q 024482 231 YVTGEGPVE 239 (267)
Q Consensus 231 ~vtG~gPl~ 239 (267)
.++|+.|+-
T Consensus 191 ~l~g~~~~~ 199 (202)
T PLN00120 191 QLGVELPII 199 (202)
T ss_pred HccCCCcCC
Confidence 999998863
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.58 E-value=2.1e-15 Score=138.70 Aligned_cols=70 Identities=31% Similarity=0.550 Sum_probs=58.5
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhh-------HhhhCCCcchhHH
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL-------AKHLSDPFANNLL 254 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL-------~~~ladP~~~n~~ 254 (267)
|+.+|||+ ||||||.+|+++++++|.+||||||+||+|++|+++|+++++.+++++. .+++.+|....++
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~ 153 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVV 153 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHH
Confidence 56789999 9999999999999999999999999999999999999999988776532 1346666544333
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.56 E-value=3.6e-15 Score=136.02 Aligned_cols=54 Identities=39% Similarity=0.682 Sum_probs=51.4
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcch
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl 238 (267)
|+.+|||+ ||||||.+|+++++++|++||||||+||+|++|+++|+++|+.+++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 56789999 9999999999999999999999999999999999999999998876
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.50 E-value=1.7e-14 Score=131.81 Aligned_cols=52 Identities=31% Similarity=0.553 Sum_probs=49.1
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCc
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 236 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~g 236 (267)
|+.+|||+ ||||||.+|+++++++|.+||||||+||+|++|+++|++++..+
T Consensus 59 dg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 59 DGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 67899999 99999999999999999999999999999999999999998754
No 18
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.45 E-value=6.8e-14 Score=127.94 Aligned_cols=52 Identities=40% Similarity=0.639 Sum_probs=49.1
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCc
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 236 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~g 236 (267)
+..+|||+ ||||+|.+|+++++++|.+||+|||+||+|++|+++|++++|..
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~ 123 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP 123 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCC
Confidence 56789999 99999999999999999999999999999999999999999864
No 19
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.44 E-value=1e-13 Score=126.18 Aligned_cols=53 Identities=30% Similarity=0.466 Sum_probs=49.8
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcc
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gP 237 (267)
|+..|||+ ||||||++|+++++++|.+||||||+||+|++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 56789999 999999999999999999999999999999999999999998654
No 20
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.43 E-value=1.2e-13 Score=129.77 Aligned_cols=53 Identities=36% Similarity=0.422 Sum_probs=49.2
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcc
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gP 237 (267)
|+..|||+ ||||||++|+++++++|.+||||||+||+|++|+++|+++++.+.
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 56789999 999999999999999999999999999999999999999886543
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.41 E-value=1.8e-13 Score=125.71 Aligned_cols=52 Identities=31% Similarity=0.511 Sum_probs=48.4
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCc
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 236 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~g 236 (267)
|...|||+ ||||||++|+++++++|.+||||||+||+|++|+++|+++++.+
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 55789999 99999999999999999999999999999999999999998653
No 22
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.41 E-value=9e-14 Score=127.77 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=49.4
Q ss_pred CCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCC
Q 024482 73 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125 (267)
Q Consensus 73 ~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G 125 (267)
+..+|||++|||+||++|+++++++|.+|||||||||+|++||++|+++++.|
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~g 238 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCC
Confidence 34699999999999999999999999999999999999999999999988655
No 23
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.39 E-value=2.9e-13 Score=123.19 Aligned_cols=49 Identities=37% Similarity=0.579 Sum_probs=46.7
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhc
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 233 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vt 233 (267)
|+.+|||+ ||||||.+|+++++++|.+||||||+||+|++|+++|++++
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 66799999 99999999999999999999999999999999999999975
No 24
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.39 E-value=2e-13 Score=121.98 Aligned_cols=52 Identities=31% Similarity=0.550 Sum_probs=48.0
Q ss_pred CCCCCCCCcccCCC-CCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCC
Q 024482 74 GEVPGDYGYDPFGL-SKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125 (267)
Q Consensus 74 G~~pGd~gfDPlgl-~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G 125 (267)
+++|||+||||+|| .+|+++++++|.+||||||+||+|++|+++|+++++.|
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g 205 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC
Confidence 47899999999999 56899999999999999999999999999999987655
No 25
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.36 E-value=3.7e-13 Score=124.88 Aligned_cols=53 Identities=34% Similarity=0.511 Sum_probs=49.4
Q ss_pred CCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCC
Q 024482 73 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125 (267)
Q Consensus 73 ~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G 125 (267)
+..+|||++|||+||++|+++++++|.+|||||||||+|++||++|+.+++.|
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~G 263 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKG 263 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC
Confidence 44589999999999999999999999999999999999999999999998765
No 26
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.34 E-value=8.6e-13 Score=120.18 Aligned_cols=50 Identities=32% Similarity=0.479 Sum_probs=47.0
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcC
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG 234 (267)
|+..|||+ ||||+|++++++++++|.+||||||+||+|++|+++|++++.
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 66789999 999999999999999999999999999999999999999754
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.27 E-value=4.9e-12 Score=107.00 Aligned_cols=50 Identities=48% Similarity=0.780 Sum_probs=45.5
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCC
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 235 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~ 235 (267)
|+.++|++ |||++|++|+ .++++|..||||||+||+|++|++++++.++.
T Consensus 6 ~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 6 DGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp TSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred cCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 34578888 9999999887 89999999999999999999999999999874
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.01 E-value=1.8e-10 Score=102.57 Aligned_cols=46 Identities=33% Similarity=0.557 Sum_probs=39.4
Q ss_pred CCCCCC-------CCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhcc
Q 024482 74 GEVPGD-------YGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 123 (267)
Q Consensus 74 G~~pGd-------~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~ 123 (267)
+++||| +||||+ |+++.+++|.+||||||+||+|++|++++|+++.
T Consensus 142 ~~~pGd~~~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g 194 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSF----DEETKLKKRAIELNQGRAAQMGILALMVHEQLGV 194 (202)
T ss_pred CCCCCccCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 578884 556665 6789999999999999999999999999998754
No 29
>PHA02337 putative high light inducible protein
Probab=98.17 E-value=1.8e-06 Score=56.65 Aligned_cols=29 Identities=31% Similarity=0.218 Sum_probs=26.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhcCCcc
Q 024482 209 KVKEIKNGRLAMFAMLGFFLQAYVTGEGP 237 (267)
Q Consensus 209 k~kELKNGRLAMlAi~G~~~Q~~vtG~gP 237 (267)
...|+-||||||++|...+.-+++||++.
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 35799999999999999999999999863
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.06 E-value=2.9e-06 Score=73.87 Aligned_cols=47 Identities=36% Similarity=0.413 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhhc-CCcchhhhHhhhCCCc
Q 024482 203 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSDPF 249 (267)
Q Consensus 203 e~~~~~k~kELKNGRLAMlAi~G~~~Q~~vt-G~gPl~nL~~~ladP~ 249 (267)
...++.|..|+.||||||++|+--++-|++| |+|++.|+.....-|.
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi 177 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPV 177 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcc
Confidence 3457788999999999999999999999999 9999999987665554
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.49 E-value=8.2e-05 Score=67.54 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=33.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhHh
Q 024482 208 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 243 (267)
Q Consensus 208 ~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~ 243 (267)
+...|+-|||+|||||+..++-+++||++.+.|+..
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~ 194 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN 194 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence 456999999999999999999999999999998865
No 32
>PHA02337 putative high light inducible protein
Probab=97.05 E-value=0.00027 Score=46.44 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=24.9
Q ss_pred HHhhhhhhhhhhhhcccchhhhhhccCC
Q 024482 98 QAYELIHARWAMLGAAGFIIPEAFNKFG 125 (267)
Q Consensus 98 r~~ElkHGR~AMLa~~G~~~~e~~~~~G 125 (267)
..+|..|||+||+|++..+..|++++.+
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~ 30 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQI 30 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999999999987654
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=95.59 E-value=0.0036 Score=57.06 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.8
Q ss_pred HHHhhhhhhhhhhhhcccchhhhhhccCC
Q 024482 97 YQAYELIHARWAMLGAAGFIIPEAFNKFG 125 (267)
Q Consensus 97 ~r~~ElkHGR~AMLa~~G~~~~e~~~~~G 125 (267)
+.++|+.|||+||+|++-.++.|++++.|
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~g 187 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVG 187 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCc
Confidence 45789999999999999999999987655
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=92.46 E-value=0.05 Score=47.84 Aligned_cols=35 Identities=37% Similarity=0.510 Sum_probs=29.5
Q ss_pred hhHHHHHHhhhhhhhhhhhhcccchhhhhhc-cCCC
Q 024482 92 DDFSKYQAYELIHARWAMLGAAGFIIPEAFN-KFGA 126 (267)
Q Consensus 92 ~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~-~~G~ 126 (267)
.+.+..+..|+.|||+||+|++-.++.|+++ +.|.
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGi 165 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGP 165 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcch
Confidence 4566667789999999999999999999998 5553
No 35
>PLN02449 ferrochelatase
Probab=46.99 E-value=14 Score=37.42 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhhcCCcchh
Q 024482 218 LAMFAMLGFFLQAYVTGEGPVE 239 (267)
Q Consensus 218 LAMlAi~G~~~Q~~vtG~gPl~ 239 (267)
+||+||+.+++-++++|.||+-
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999873
No 36
>PHA00003 B internal scaffolding protein
Probab=20.21 E-value=1.4e+02 Score=24.61 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=25.0
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHH
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 223 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi 223 (267)
++.+|-++ |||-. .| -+.++.|-.||.+||-+.--=
T Consensus 41 ~~t~p~gLRrdpvq--~d-~EaERqkr~~iEagk~~c~Rr 77 (120)
T PHA00003 41 NGTDPSGLRRDPVQ--QD-LEAERQKRADIEAGKAICARR 77 (120)
T ss_pred CCCCccccccCccc--ch-HHHHHHHHHHHHHHHHHHHHH
Confidence 45677777 88743 22 346788899999999876433
Done!