Query 024482
Match_columns 267
No_of_seqs 238 out of 1175
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 08:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 9.9E-65 3.4E-69 455.3 18.9 220 41-267 8-232 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 1.5E-62 5E-67 442.1 7.2 195 48-257 5-242 (243)
3 2wsc_3 LHCA3, type II chloroph 100.0 1.2E-57 4E-62 417.8 5.7 212 29-259 38-275 (276)
4 2wsc_4 Chlorophyll A-B binding 100.0 5.9E-58 2E-62 415.3 -0.3 190 46-259 44-250 (251)
5 2wsc_2 LHCA2, type II chloroph 100.0 5.9E-57 2E-61 411.8 -1.9 194 46-259 56-268 (269)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 2.4E-54 8.3E-59 389.4 6.0 190 54-257 45-237 (241)
7 2bhw_A Chlorophyll A-B binding 99.4 2.2E-13 7.6E-18 122.1 6.6 50 185-234 37-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.4 2.4E-14 8.2E-19 129.7 -1.1 54 185-238 67-121 (251)
9 2wsc_2 LHCA2, type II chloroph 99.4 6.8E-14 2.3E-18 127.8 -0.1 54 185-238 78-132 (269)
10 3pl9_A Chlorophyll A-B binding 99.3 2.6E-13 9E-18 122.1 3.4 50 75-125 172-221 (243)
11 2wsc_3 LHCA3, type II chloroph 99.3 3.5E-13 1.2E-17 123.4 1.5 54 73-126 200-253 (276)
12 2wsc_1 AT3G54890, LHCA1; photo 99.2 7.7E-13 2.6E-17 119.1 -0.2 50 185-234 59-109 (241)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=9.9e-65 Score=455.30 Aligned_cols=220 Identities=50% Similarity=0.877 Sum_probs=190.6
Q ss_pred CCCCCCCCCCCCCcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhh
Q 024482 41 SPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 120 (267)
Q Consensus 41 ~~~~~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~ 120 (267)
+++++.|+||+++|++|+| +++ .++|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+
T Consensus 8 ~~~~~~~~~~~~~r~~~l~--~~~-~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~ 84 (232)
T 2bhw_A 8 KVASSGSPWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPEL 84 (232)
T ss_dssp --CCTTCTTSSTTCCCTTG--GGC-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCCcccccC--ccc-cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHH
Confidence 3445689999999999994 454 6899999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCchhhhccccccCCCcccccCCCchh--H-HHHHHHHHHHHHhhhhheeeeccc--CCCCCCCCCCCCCC
Q 024482 121 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI--N-LVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDP 195 (267)
Q Consensus 121 ~~~~G~~~~p~~~w~~aG~~~~~~~~l~~~g~~~pi--~-~~~~~~~qv~l~g~~E~~r~~~g~--~~~d~~~PGd~FDP 195 (267)
+++.|..+. +..|+++|...+++..++|++++... + +...+++|+++||++|.+|+.++. ...|+.||||+|||
T Consensus 85 l~~~G~~~~-~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdP 163 (232)
T 2bhw_A 85 LSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDP 163 (232)
T ss_dssp HHTTTCCCS-CCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCT
T ss_pred hccCCcCCc-ccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCccccc
Confidence 988776543 56899999877777778888876422 2 334457899999999999877532 22467899999999
Q ss_pred CCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhHhhhCCCcchhHHHhhhcccccCCCC
Q 024482 196 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 267 (267)
Q Consensus 196 Lgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~~~~~~~~~~ 267 (267)
||+.+|+++++++|++|||||||||+||+|+++|+.+||++|++||.+|++||++||++++ +++++|++
T Consensus 164 lgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~---~~~~~~~~ 232 (232)
T 2bhw_A 164 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSY---ATNFVPGK 232 (232)
T ss_dssp TCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGG---TTTTCSCC
T ss_pred chhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHH---HHhhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999887 56789874
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.5e-62 Score=442.10 Aligned_cols=195 Identities=42% Similarity=0.801 Sum_probs=136.7
Q ss_pred CCCCCCcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChh-----------------------------------
Q 024482 48 SPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------------------------- 92 (267)
Q Consensus 48 ~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~----------------------------------- 92 (267)
++++++|++|+|+ ..+|+||||++|||||||||||+++||
T Consensus 5 ~~~~~~r~~w~pg-----~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (243)
T 3pl9_A 5 SGFSTDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTS 79 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccCC-----CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccc
Confidence 5678899999996 789999999999999999999999987
Q ss_pred --------hHHHHHHhhhhhhhhhhhhcccchhhhhhccCCCCCCCCchhhhccccccCCCcccccCCCchhHHHHHHHH
Q 024482 93 --------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 164 (267)
Q Consensus 93 --------~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G~~~~p~~~w~~aG~~~~~~~~l~~~g~~~pi~~~~~~~~ 164 (267)
+++|||++|||||||||||++||++||++++ ..|+++|...+++ .++|++++.+..+..++++
T Consensus 80 ~~~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g--------~~W~~aG~~~~~~-g~~y~g~p~~~~i~~l~~~ 150 (243)
T 3pl9_A 80 LQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTG--------ITWQDAGKVELIE-GSSYLGQPLPFSMTTLIWI 150 (243)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCTTTHHHHHHHS-CEEETTEEECCCHHHHHHH
T ss_pred cccccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcC--------ccccccccccccc-ccccccCccchhhHHHHHH
Confidence 3899999999999999999999999999852 3699998765543 4678887776665566788
Q ss_pred HHHHHhhhhheeeecccCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhHhh
Q 024482 165 EIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 244 (267)
Q Consensus 165 qv~l~g~~E~~r~~~g~~~~d~~~PGd~FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~~ 244 (267)
|+++||++|.+|+.+ .+.++..||||+|||||+.+|+++++++|++|||||||||+||+|+++|+++||+||++||.+|
T Consensus 151 qv~lmG~~E~~R~~~-~~~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~H 229 (243)
T 3pl9_A 151 EVLVIGYIEFQRNAE-LDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTH 229 (243)
T ss_dssp HHHHHHHHHHHHHSC-CCTTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc-cCCccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 999999999999875 2233567999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcchhHHHhh
Q 024482 245 LSDPFANNLLTVI 257 (267)
Q Consensus 245 ladP~~~n~~~~~ 257 (267)
++||+|||+++++
T Consensus 230 ladP~~~ni~~~~ 242 (243)
T 3pl9_A 230 LSDPLHTTILDRF 242 (243)
T ss_dssp HHCSGGGSTTTTT
T ss_pred hcCcchhhhhhhc
Confidence 9999999999875
No 3
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=1.2e-57 Score=417.78 Aligned_cols=212 Identities=42% Similarity=0.738 Sum_probs=112.8
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChhhH------HHHHHhhh
Q 024482 29 KPPLLPSLSPSPSPPLTKSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------SKYQAYEL 102 (267)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~~------~~~r~~El 102 (267)
++++||++.. ++ . .||++|++|+|+ .+.|+||+|++||||||||||| +|++++ +|||++||
T Consensus 38 ~~~~~~~~~~---~~---~-~~g~~R~~wlP~-----~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl 104 (276)
T 2wsc_3 38 ASFLVKAAAT---PP---V-KQGSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEI 104 (276)
T ss_dssp ------------------------------------------------------------CCCCCCCCSSSTTHHHHHHH
T ss_pred cceeEecccC---Cc---c-ccCCCccccCCC-----CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHh
Confidence 4456776531 22 2 389999999985 6899999999999999999999 688999 99999999
Q ss_pred hhhhhhhhhcccchhhhhhccCCCCCCCC-chhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhheeeec--
Q 024482 103 IHARWAMLGAAGFIIPEAFNKFGANCGPE-AVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-- 179 (267)
Q Consensus 103 kHGR~AMLa~~G~~~~e~~~~~G~~~~p~-~~w~~aG~~~~~~~~l~~~g~~~pi~~~~~~~~qv~l~g~~E~~r~~~-- 179 (267)
|||||||||++|++++|++++.|...... ..|++++.+. ..+.++|++++.. .+++|+++||++|.+|+++
T Consensus 105 ~hGR~AMLa~~G~l~~E~~~~~g~~~~~~p~~w~~~g~ip-~aG~~~~~~~~~~-----l~~~qi~liG~~E~~r~~~~~ 178 (276)
T 2wsc_3 105 INGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIP-PAGTYNYWADSYT-----LFVFEMALMGFAEHRRFQDWA 178 (276)
T ss_dssp HHHTTSCCTTTSTTSCSSCSSCCCCCCSSCCSSSSCCCC------CCCSCCCCS-----TTHHHHHHTHHHHTTTTTGGG
T ss_pred hcccchhhhHHHHHHHHHhcccccccccCcchhhhhhccc-chhHHHHhccchH-----HHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999998877653212 2498876532 2334567776543 2456888899999988653
Q ss_pred --cc--------------CCCCCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhH
Q 024482 180 --GL--------------DLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 242 (267)
Q Consensus 180 --g~--------------~~~d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL~ 242 (267)
|. ...|..||||+ ||||||.+|+++++++|++|||||||||+||+|+++|+++||++|++||.
T Consensus 179 ~pG~~g~~p~~g~~~~~~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~ 258 (276)
T 2wsc_3 179 KPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLL 258 (276)
T ss_dssp SCCCCCCCCSSCSCCCCCCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC--
T ss_pred cCCcccccccccccccccccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHH
Confidence 11 11256799998 99999998888899999999999999999999999999999999999999
Q ss_pred hhhCCCcchhHHHhhhc
Q 024482 243 KHLSDPFANNLLTVISG 259 (267)
Q Consensus 243 ~~ladP~~~n~~~~~~~ 259 (267)
+|++||||||++++++.
T Consensus 259 ~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 259 DHLTDPVHNNILTSLKF 275 (276)
T ss_dssp -----------------
T ss_pred HhccCcccchhhhhccC
Confidence 99999999999998764
No 4
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=5.9e-58 Score=415.26 Aligned_cols=190 Identities=39% Similarity=0.737 Sum_probs=125.6
Q ss_pred CCCCCCC-CcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccC
Q 024482 46 KSSPSGP-DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 124 (267)
Q Consensus 46 ~~~~~~~-~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~ 124 (267)
...+|++ +|++|+|+ .++|+||+|++|||+||||+||++|+++++|||++|||||||||||++|++++|++++.
T Consensus 44 ~~~~~~~~~r~~~~pg-----~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~ 118 (251)
T 2wsc_4 44 SASFKVEAKKGEWLPG-----LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSI 118 (251)
T ss_dssp ------------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCS
T ss_pred cccccCcchhhhccCC-----CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCC
Confidence 4459999 89999985 68999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhheeeec----cc-C-----------CCCCCC
Q 024482 125 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL-D-----------LEDKLH 188 (267)
Q Consensus 125 G~~~~p~~~w~~aG~~~~~~~~l~~~g~~~pi~~~~~~~~qv~l~g~~E~~r~~~----g~-~-----------~~d~~~ 188 (267)
|... .+.|+++|.. +|++++.. ++++|+++||++|.+|+.+ |. + ..|..|
T Consensus 119 g~~~--~p~w~~aG~~-------~~~~~~~~-----l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~y 184 (251)
T 2wsc_4 119 GIIN--VPKWYAAGKE-------EYFASSST-----LFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGY 184 (251)
T ss_dssp CSSC--CCCCSCCCSS-------SCSSCSSC-----TTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHS
T ss_pred CccC--CccccccchH-------hhhccchH-----HHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccC
Confidence 7653 2468887642 35554422 2356888899999988654 21 0 012368
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhHhhhCCCcchhHHHhhhc
Q 024482 189 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 259 (267)
Q Consensus 189 PGd~FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~~ladP~~~n~~~~~~~ 259 (267)
|||+||||++.+ ++++|+|||||||| ||||+||++|+++||++|++||.+|++||+|||+++++++
T Consensus 185 PGg~FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~~ 250 (251)
T 2wsc_4 185 PGGIFNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGG 250 (251)
T ss_dssp SCCTTCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC----
T ss_pred CCCccCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhcC
Confidence 999999999975 56799999999999 9999999999999999999999999999999999998765
No 5
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=5.9e-57 Score=411.83 Aligned_cols=194 Identities=41% Similarity=0.782 Sum_probs=130.9
Q ss_pred CCCCCCCCcccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCC
Q 024482 46 KSSPSGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125 (267)
Q Consensus 46 ~~~~~~~~r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G 125 (267)
...+|+++|++|+|+ .++|+||+|++||||||||+||++|+++++|||++|||||||||||++|+++||++++.|
T Consensus 56 ~~~~~~~~r~~wlpg-----~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G 130 (269)
T 2wsc_2 56 VCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLG 130 (269)
T ss_dssp -------------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTT
T ss_pred eecccCCCcccccCC-----CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCC
Confidence 445899999999986 689999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCCchhhhccccccCCCcccccCCCchhHHHHHHHHHHHHHhhhhheeeec----cc------------CCCCCCCC
Q 024482 126 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL------------DLEDKLHP 189 (267)
Q Consensus 126 ~~~~p~~~w~~aG~~~~~~~~l~~~g~~~pi~~~~~~~~qv~l~g~~E~~r~~~----g~------------~~~d~~~P 189 (267)
.... +.|+++|.. .|+..+.. ++++|+++||++|.+|+.+ |. ...|..||
T Consensus 131 ~~~~--p~w~~aG~~-------~~~~~~~~-----l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~P 196 (269)
T 2wsc_2 131 ILNT--PSWYTAGEQ-------EYFTDTTT-----LFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYP 196 (269)
T ss_dssp SSSC--CCCCSTTSS-------SSCCCTTS-----HHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCT
T ss_pred cccC--ccccccchh-------hhhcchHH-----HHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCC
Confidence 6533 358887642 34444321 2467888999999988643 11 11255899
Q ss_pred CCC-CCCCCCCC-ChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhH-hhhCCCcchhHHHhhhc
Q 024482 190 GGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA-KHLSDPFANNLLTVISG 259 (267)
Q Consensus 190 Gd~-FDPLgl~~-dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl~nL~-~~ladP~~~n~~~~~~~ 259 (267)
||+ ||||||.+ |+++++++|.+|||||||||+||+|+++|+++||++|++||. +|++|| |||++++++.
T Consensus 197 G~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~~ 268 (269)
T 2wsc_2 197 GGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFTP 268 (269)
T ss_dssp TCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSCC
T ss_pred CCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhccC
Confidence 999 99999985 788899999999999999999999999999999999999999 999999 9999998764
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=2.4e-54 Score=389.38 Aligned_cols=190 Identities=43% Similarity=0.815 Sum_probs=139.2
Q ss_pred cccccCcCcCCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCCCCCCCCch
Q 024482 54 RRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 133 (267)
Q Consensus 54 r~~~lp~g~~~~~~~P~~l~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G~~~~p~~~ 133 (267)
|.+|+|+ .++|+||+|++|||+||||+||++|+++++|||++|||||||||||++|+++||+++. ..
T Consensus 45 ~~~w~P~-----~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~~ 111 (241)
T 2wsc_1 45 AAHWMPG-----EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------GN 111 (241)
T ss_dssp ---------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C-
T ss_pred ccccCCC-----CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------Cc
Confidence 5678986 7899999999999999999999999999999999999999999999999999998753 13
Q ss_pred hhhccc-cccCCCcccccCCCchh-HHHHHHHHHHHHHhhhhheeeecccCCCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 024482 134 WFKTGA-LLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 211 (267)
Q Consensus 134 w~~aG~-~~~~~~~l~~~g~~~pi-~~~~~~~~qv~l~g~~E~~r~~~g~~~~d~~~PGd~FDPLgl~~dpe~~~~~k~k 211 (267)
|++++. ..++++...|++++.++ .+..++++|+++||++|.+|..+. +.+++.||||.|||||+.+|+++++++|.+
T Consensus 112 ~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~-~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~ 190 (241)
T 2wsc_1 112 WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKVK 190 (241)
T ss_dssp ----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC-SSCCSSSCSCCSCSSSCSCSSSSCCCSCTT
T ss_pred cccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCCCCCcccccccccchhHHHHHHHh
Confidence 555543 13345555677766543 233455788999999999987643 234568999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHh-hhcCCcchhhhHhhhCCCcchhHHHhh
Q 024482 212 EIKNGRLAMFAMLGFFLQA-YVTGEGPVENLAKHLSDPFANNLLTVI 257 (267)
Q Consensus 212 ELKNGRLAMlAi~G~~~Q~-~vtG~gPl~nL~~~ladP~~~n~~~~~ 257 (267)
|||||||||+|++|+++|+ .+||++|++||.+|++||+|||+++++
T Consensus 191 E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~ 237 (241)
T 2wsc_1 191 EIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 237 (241)
T ss_dssp HHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC-------
T ss_pred hcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeee
Confidence 9999999999999999999 589999999999999999999999875
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.40 E-value=2.2e-13 Score=122.06 Aligned_cols=50 Identities=28% Similarity=0.488 Sum_probs=46.9
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcC
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG 234 (267)
|+..|||+ ||||||++|+++++++|..||||||+||+|++|+++|++++.
T Consensus 37 dG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 37 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 56789999 999999999999999999999999999999999999999764
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.38 E-value=2.4e-14 Score=129.67 Aligned_cols=54 Identities=39% Similarity=0.677 Sum_probs=39.2
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcch
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl 238 (267)
++.+|||+ ||||||.+|+|+++++|.+||||||+||+|++|+++|+++++.+.+
T Consensus 67 ~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 67 TGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp --------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 45689999 9999999999999999999999999999999999999999998766
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.35 E-value=6.8e-14 Score=127.75 Aligned_cols=54 Identities=35% Similarity=0.618 Sum_probs=36.3
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcch
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 238 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG~gPl 238 (267)
++..|||+ ||||||.+|+|+++++|.+||||||+||+|++|+++|+++++.+.+
T Consensus 78 ~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 78 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp ----------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 45689999 9999999999999999999999999999999999999999876544
No 10
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.35 E-value=2.6e-13 Score=122.10 Aligned_cols=50 Identities=38% Similarity=0.630 Sum_probs=47.5
Q ss_pred CCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCC
Q 024482 75 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 125 (267)
Q Consensus 75 ~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G 125 (267)
.+|||+ |||+||++|+++++++|.+||||||+||+|++|+++++++++.|
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~G 221 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKG 221 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 589999 99999999999999999999999999999999999999998765
No 11
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.30 E-value=3.5e-13 Score=123.44 Aligned_cols=54 Identities=22% Similarity=0.453 Sum_probs=44.7
Q ss_pred CCCCCCCCCcccCCCCCChhhHHHHHHhhhhhhhhhhhhcccchhhhhhccCCC
Q 024482 73 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 126 (267)
Q Consensus 73 ~G~~pGd~gfDPlgl~~~~~~~~~~r~~ElkHGR~AMLa~~G~~~~e~~~~~G~ 126 (267)
+..+|||++|||+||++++++++++|++||||||+||+|++|++++|++++.|.
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~ 253 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGP 253 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCC
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCCh
Confidence 446899999999999998888999999999999999999999999999887653
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.23 E-value=7.7e-13 Score=119.14 Aligned_cols=50 Identities=34% Similarity=0.512 Sum_probs=45.5
Q ss_pred CCCCCCCC-CCCCCCCCChhHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcC
Q 024482 185 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 234 (267)
Q Consensus 185 d~~~PGd~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAi~G~~~Q~~vtG 234 (267)
++..|||+ ||||||.+|+++++++|.+||||||+||+|++|+++|++++.
T Consensus 59 ~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~ 109 (241)
T 2wsc_1 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY 109 (241)
T ss_dssp --CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred cCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence 45689999 999999999999999999999999999999999999999753
Done!