BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024483
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus
musculus GN=Rchy1 PE=1 SV=1
Length = 261
Score = 221 bits (562), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/250 (44%), Positives = 153/250 (61%), Gaps = 11/250 (4%)
Query: 17 GCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQP 76
GC+HY R C ++APCC++++ CR CH+ + H+L R VK+V C C+ Q
Sbjct: 19 GCEHYDRACLLKAPCCDKLYTCRLCHDTN--------EDHQLDRFKVKEVQCINCEKLQH 70
Query: 77 VAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYST 136
Q C +C GEY+C IC +D D K Q+HC+ CGICRIG +E++FHC +C C +T
Sbjct: 71 AQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 128
Query: 137 SLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICS 196
+LR H CIEN +CPIC E + S V+ CGH +H CY EM+K + Y CP+C
Sbjct: 129 NLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCM 187
Query: 197 KSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYN 256
S +DM+R W+++D E+ T MP +Y++ V ILCNDCN + V FHI+G KC C SYN
Sbjct: 188 HSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYN 247
Query: 257 TRSIAPPVLP 266
T +P
Sbjct: 248 TAQAGGRRVP 257
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo
sapiens GN=RCHY1 PE=1 SV=1
Length = 261
Score = 219 bits (558), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 159/259 (61%), Gaps = 13/259 (5%)
Query: 1 MEGSANERITFG--KMGYGCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHEL 58
M +A E G + GC+HY R C ++APCC++++ CR CH+ + H+L
Sbjct: 1 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNN--------EDHQL 52
Query: 59 VRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRI 118
R VK+V C C+ Q Q C C GEY+CDIC +D D K Q+HC++CGICRI
Sbjct: 53 DRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRI 110
Query: 119 GGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHC 178
G +E++FHC +C C + +L+ H CIEN +CPIC E + S V+ CGH +H
Sbjct: 111 GPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHR 170
Query: 179 ECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTT 238
CY EM+K + Y CP+C S +DM+R W+++D+E+ T MP +Y++ V ILCNDCN +
Sbjct: 171 TCYEEMLK-EGYRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRS 229
Query: 239 EVYFHIIGQKCSHCKSYNT 257
V FHI+G KC C+SYNT
Sbjct: 230 TVQFHILGMKCKICESYNT 248
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1
Length = 425
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/252 (43%), Positives = 145/252 (57%), Gaps = 13/252 (5%)
Query: 17 GCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQP 76
GC HY R C+++ C+E + CRHCHN+A H L R V+ ++C +C QP
Sbjct: 141 GCSHYMRNCKVQCFDCHEWYTCRHCHNDACD--------HVLERPAVENMLCMICSKVQP 192
Query: 77 VAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGG--RENYFHCKRCGSCY 134
AQ C C MG Y+C+ CK +DDD K +HCDDCGICRIG ++YFHCK CG C
Sbjct: 193 AAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTCGLCL 252
Query: 135 STSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPI 194
S+ N H CIE S +CPIC EY+F+S + C H +H C+ E I R Y CP
Sbjct: 253 PISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYI-RTNYRCPT 311
Query: 195 CSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKS 254
C K++I+++ ++ +D EIE MP Y I CNDCN + +H +G KC+ C S
Sbjct: 312 CYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHKCNSCHS 371
Query: 255 YNT--RSIAPPV 264
YNT SI P+
Sbjct: 372 YNTCISSIYKPL 383
>sp|Q2TL32|UBR4_RAT E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus GN=Ubr4 PE=2
SV=2
Length = 5194
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 45 AASMLRNPYDRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDI 103
A++++ D +E + + + C C P VC NCG N+ Y C C+ + D
Sbjct: 3648 ASNLMIEFADFYENYQASTETLQCPRCSASVPANPGVCGNCGENV--YQCHKCRSINYD- 3704
Query: 104 EKGQFHCDDCGICRIGGRENYFHCKRC 130
EK F C+ CG C+ + + K C
Sbjct: 3705 EKDPFLCNACGFCKYARFDFMLYAKPC 3731
>sp|A2AN08|UBR4_MOUSE E3 ubiquitin-protein ligase UBR4 OS=Mus musculus GN=Ubr4 PE=1 SV=1
Length = 5180
Score = 40.8 bits (94), Expect = 0.009, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 45 AASMLRNPYDRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDI 103
A++++ D +E + + + C C P VC NCG N+ Y C C+ + D
Sbjct: 3634 ASNLMIEFADFYENYQASTETLQCPRCSASVPANPGVCGNCGENV--YQCHKCRSINYD- 3690
Query: 104 EKGQFHCDDCGICRIGGRENYFHCKRC 130
EK F C+ CG C+ + + K C
Sbjct: 3691 EKDPFLCNACGFCKYARFDFMLYAKPC 3717
>sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1
Length = 5183
Score = 40.8 bits (94), Expect = 0.010, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 45 AASMLRNPYDRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDI 103
A++++ D +E + + + C C P VC NCG N+ Y C C+ + D
Sbjct: 3637 ASNLMIEFADFYENYQASTETLQCPRCSASVPANPGVCGNCGENV--YQCHKCRSINYD- 3693
Query: 104 EKGQFHCDDCGICRIGGRENYFHCKRC 130
EK F C+ CG C+ + + K C
Sbjct: 3694 EKDPFLCNACGFCKYARFDFMLYAKPC 3720
>sp|Q8BRH4|MLL3_MOUSE Histone-lysine N-methyltransferase MLL3 OS=Mus musculus GN=Mll3
PE=2 SV=2
Length = 4903
Score = 40.4 bits (93), Expect = 0.012, Method: Composition-based stats.
Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 40/182 (21%)
Query: 68 CSVCDTEQPVAQ--VCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICR----IGGR 121
C+VCD+ + CT CG + DI +++ + C +C +C+ G
Sbjct: 343 CAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV---TPLKRAGWQCPECKVCQNCKQSGED 399
Query: 122 ENYFHCKRCGSCYST---------------SLRNNHLCIE------NSMHHHCPICYEYL 160
C C Y T +N +CIE HH+C IC +
Sbjct: 400 SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIECGTRSSTQWHHNCLIC-DTC 458
Query: 161 FDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPE 220
+ N CG +CYH +++D C +C + V K D+E+++ + E
Sbjct: 459 YQQQDNLCPF-CG-----KCYHPELQKDMLHCNMCKRWV--HLECDKPTDQELDSQ-LKE 509
Query: 221 DY 222
DY
Sbjct: 510 DY 511
>sp|Q8NEZ4|MLL3_HUMAN Histone-lysine N-methyltransferase MLL3 OS=Homo sapiens GN=MLL3
PE=1 SV=3
Length = 4911
Score = 39.7 bits (91), Expect = 0.021, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 37/159 (23%)
Query: 68 CSVCDTEQPVAQ--VCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICR----IGGR 121
C+VCD+ + CT CG + DI +++ + C +C +C+ G
Sbjct: 344 CAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV---TPLKRAGWQCPECKVCQNCKQSGED 400
Query: 122 ENYFHCKRCGSCYST---------------SLRNNHLCIE------NSMHHHCPICYEYL 160
C C Y T +N +CIE + HH+C IC +
Sbjct: 401 SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIECGTRSSSQWHHNCLIC-DNC 459
Query: 161 FDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199
+ N CG +CYH +++D C +C + V
Sbjct: 460 YQQQDNLCPF-CG-----KCYHPELQKDMLHCNMCKRWV 492
>sp|E7FAP1|RN169_DANRE E3 ubiquitin-protein ligase RNF169 OS=Danio rerio GN=rnf169 PE=3
SV=1
Length = 630
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 127 CKRCGSCYSTSLRNNHLCIENSMHH-HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMI 185
K G + R L S+ CP+C E L + + M CGH++ C+ +
Sbjct: 9 AKSTGPGQRSKSRPGALSAPLSLEEARCPVCSEILLEPV----TMPCGHSVCLHCFQRTV 64
Query: 186 KRDKYCCPICSKSVIDMSRTWKRIDEEIEATV 217
K CCP+C V +R R + A +
Sbjct: 65 KLISLCCPLCRLRVSSWARKQSREKSLVNAEL 96
>sp|Q6INS5|RN168_XENLA E3 ubiquitin-protein ligase RNF168 OS=Xenopus laevis GN=rnf168 PE=2
SV=1
Length = 557
Score = 38.9 bits (89), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRI 209
CPIC E L + + + C HT+ C+ +++ CCP C K V TW R+
Sbjct: 16 CPICQEILLEPV----TLPCKHTLCNPCFQMTVEKASLCCPFCRKRV----STWARL 64
>sp|O88196|TTC3_MOUSE E3 ubiquitin-protein ligase TTC3 OS=Mus musculus GN=Ttc3 PE=2 SV=2
Length = 1979
Score = 38.5 bits (88), Expect = 0.046, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKS 198
C IC+E +F S +N V+KCGH H C+ + +K + CP C S
Sbjct: 1931 CEICHE-IFKS-KNMRVLKCGHKFHKGCFKQWLK-GQSTCPTCGSS 1973
>sp|Q7T308|RN168_DANRE E3 ubiquitin-protein ligase RNF168 OS=Danio rerio GN=rnf168 PE=2
SV=1
Length = 474
Score = 38.5 bits (88), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEE 212
CP+C E + + + C HT C+ E + + CCP+C K V TW R++
Sbjct: 26 CPVCLEIFLEPV----TLPCMHTFCKPCFLETVDKSNMCCPLCRKRV----STWARLNSR 77
Query: 213 IEATVMPEDYRH 224
+ V E +R
Sbjct: 78 NKTLVNMELWRR 89
>sp|B0BLU1|RN168_XENTR E3 ubiquitin-protein ligase RNF168 OS=Xenopus tropicalis GN=rnf168
PE=2 SV=1
Length = 535
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKR 208
CPIC E L + + + C HT+ C+ +++ CCP C K V TW R
Sbjct: 16 CPICQEILLEPV----TLPCKHTLCNPCFQMTVEKASLCCPFCRKRV----STWAR 63
>sp|P53804|TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens GN=TTC3 PE=1 SV=2
Length = 2025
Score = 37.0 bits (84), Expect = 0.14, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPIC 195
C IC+E +F S +N V+KCGH H C+ + +K + CP C
Sbjct: 1957 CEICHE-VFKS-KNVRVLKCGHKYHKGCFKQWLK-GQSACPAC 1996
>sp|Q9VLT5|POE_DROME Protein purity of essence OS=Drosophila melanogaster GN=poe PE=1 SV=1
Length = 5322
Score = 37.0 bits (84), Expect = 0.16, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 54 DRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDD 112
D E V + + C C P VC NCG N+ + C C+ + D EK F C
Sbjct: 3779 DFFETVSGSSENLQCPRCSAAVPAYPGVCGNCGENV--FQCHKCRAINYD-EKDPFLCHS 3835
Query: 113 CGICRIGGRENYFHCKRC 130
CG C+ + + + C
Sbjct: 3836 CGFCKYAKFDFSMYARVC 3853
>sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila pseudoobscura pseudoobscura
GN=poe PE=3 SV=1
Length = 5381
Score = 37.0 bits (84), Expect = 0.16, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 54 DRHELVRQDVKQVICSVCDTEQPV-AQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDD 112
D E V + + C C P VC NCG N+ + C C+ + D EK F C
Sbjct: 3832 DFFETVSGSSENLQCPRCSAAVPAYPGVCGNCGENV--FQCHKCRAINYD-EKDPFLCHS 3888
Query: 113 CGICRIGGRENYFHCKRC 130
CG C+ + + + C
Sbjct: 3889 CGFCKYAKFDFSMYARVC 3906
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 204
CP+C E + + C HT HC+C + K CP+C S + +SR
Sbjct: 240 CPVCLERMDSETTGLVTIPCQHTFHCQCLN---KWKNSRCPVCRHSSLRLSR 288
>sp|Q0IIM1|RN168_BOVIN E3 ubiquitin-protein ligase RNF168 OS=Bos taurus GN=RNF168 PE=2
SV=2
Length = 573
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRID 210
C IC E LF+ + + C HT+ C+ +++ CCP C + V +R R +
Sbjct: 15 QCQICVEILFEPV----TLPCNHTLCKPCFESTVEKASLCCPFCRRRVSSWARYRSRTN 69
>sp|Q923S6|NEU1A_MOUSE Neuralized-like protein 1A OS=Mus musculus GN=Neurl PE=1 SV=1
Length = 574
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRTWK 207
C ICYE+ D T + CGH C C + K CCPIC + + D+ +T++
Sbjct: 521 CTICYEHAVD----TVIYTCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIKTYR 572
>sp|O76050|NEU1A_HUMAN Neuralized-like protein 1A OS=Homo sapiens GN=NEURL PE=2 SV=1
Length = 574
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRTWK 207
C ICYE+ D T + CGH C C + K CCPIC + + D+ +T++
Sbjct: 521 CTICYEHAVD----TVIYTCGHMCLCYACGLRLKKALHACCPICRRPIKDIIKTYR 572
>sp|Q80XJ2|RN168_MOUSE E3 ubiquitin-protein ligase RNF168 OS=Mus musculus GN=Rnf168 PE=2
SV=3
Length = 565
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 204
C IC E L + + + C HT+ C+ +++ CCP C + V +R
Sbjct: 15 QCGICMEILLEPV----TLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTR 63
>sp|Q9BYM8|HOIL1_HUMAN RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Homo
sapiens GN=RBCK1 PE=1 SV=2
Length = 510
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 145 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDK---YCCPICSKSVID 201
+ N+ CP+CY L + +C HT EC I+ + CP +
Sbjct: 274 VLNTEPAECPVCYSVLAPG-EAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNT--- 329
Query: 202 MSRTWKRIDEEIEATVMPEDYR 223
S + K ++ EI+A + PEDY+
Sbjct: 330 YSCSGKLLEREIKALLTPEDYQ 351
>sp|B2RYR0|RN168_RAT E3 ubiquitin-protein ligase RNF168 OS=Rattus norvegicus GN=Rnf168
PE=2 SV=1
Length = 564
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 204
C IC E L + + + C HT+ C+ +++ CCP C + V +R
Sbjct: 15 QCGICMEILVEPV----TLPCNHTLCNPCFQSTVEKANLCCPFCRRRVSSWTR 63
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
C IC E D + ++ C H HC+C + + K CP+C + V+
Sbjct: 240 CAICLEEYEDGDK-LRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q9NQX1|PRDM5_HUMAN PR domain zinc finger protein 5 OS=Homo sapiens GN=PRDM5 PE=1 SV=2
Length = 630
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 33/180 (18%)
Query: 34 EIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTE-QPVAQVCTNCGVNMGE-- 90
EIFDC+ C + S N RH + + + C +C+ + + QV + ++ +
Sbjct: 318 EIFDCQECMKKFISA--NQLKRHMITHSEKRPYNCEICNKSFKRLDQVGAHKVIHSEDKP 375
Query: 91 YFCDIC--KFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLR-NNHLCIEN 147
Y C +C F ++ K + E F C+ C + + T HL I N
Sbjct: 376 YKCKLCGKGFAHRNVYKNH--------KKTHSEERPFQCEECKALFRTPFSLQRHLLIHN 427
Query: 148 SMH----HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS 203
S HHC ++ R T+ +H + HE K KY C +C+K+ + S
Sbjct: 428 SERTFKCHHCDATFK------RKDTL-----NVHVQVVHERHK--KYRCELCNKAFVTPS 474
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 144 CIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS 203
+EN + C IC EY +++ + C H+ C +E +KR K CPIC K + +
Sbjct: 398 VLENELQ--CIICSEYFVEAV----TLNCAHSFCSYCINEWMKR-KVECPICRKDIKSKT 450
Query: 204 RT 205
R+
Sbjct: 451 RS 452
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
C IC E D ++ C H HC+C + + K CP+C + V+
Sbjct: 240 CAICLEEYEDG-DKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 162 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 162 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1
SV=1
Length = 546
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRT 205
S + C +C FDS +T + CGH C C + ++ + CCPIC + + D+ +
Sbjct: 488 GSRNGECTVC----FDSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKDVIKI 543
Query: 206 WK 207
++
Sbjct: 544 YR 545
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 162 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 162 DSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
D LR ++ C H HC+C + + K CP+C + V+
Sbjct: 251 DKLR---ILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVV 286
>sp|Q8IYW5|RN168_HUMAN E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1
SV=1
Length = 571
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 204
C IC E L + + + C HT+ C+ +++ CCP C + V +R
Sbjct: 15 QCGICMEILVEPV----TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTR 63
>sp|O74757|HRD1_SCHPO ERAD-associated E3 ubiquitin-protein ligase hrd1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrd1 PE=1 SV=1
Length = 677
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 170 MKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200
+ CGH +H C ++R + CPIC +SVI
Sbjct: 326 LPCGHILHFHCLRNWLERQQ-TCPICRRSVI 355
>sp|B8D274|SYM_HALOH Methionine--tRNA ligase OS=Halothermothrix orenii (strain H 168 /
OCM 544 / DSM 9562) GN=metG PE=3 SV=1
Length = 540
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/224 (19%), Positives = 84/224 (37%), Gaps = 31/224 (13%)
Query: 10 TFGKMGYGCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICS 69
TF K+G+ +Y + D H S+++ +++ + ++ KQ+ CS
Sbjct: 79 TFTKLGFSYDNYTKT------------DNPFHHQVVQSIIKKLFEKGYIYKKQTKQLYCS 126
Query: 70 VCDTEQP---VAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFH 126
C P V +C CG + CD C + + + C CG + +F+
Sbjct: 127 KCQQFLPDRYVEGICPVCGKVVRGDQCDYCSSLIEPTDLEEKRCKICGSSPVIKNTEHFY 186
Query: 127 CKRCGSCYSTSLR----NNHLCIENSMHHHCPICYEYLFDSLRNTTV---MKCGHTMHCE 179
S +S L+ NN +N++ + Y+ + L++ + + G ++ E
Sbjct: 187 L--ALSEFSDELKRLLDNNRGWRDNAIK----LSTRYIEEGLQDRAITRDLNWGVSIPFE 240
Query: 180 CYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYR 223
Y E + Y + S+ W R E ED +
Sbjct: 241 GYEE---KRIYVWIDAVLGYLSASKEWSRHTGEPWQNFWSEDTK 281
>sp|Q9CXE0|PRDM5_MOUSE PR domain zinc finger protein 5 OS=Mus musculus GN=Prdm5 PE=2 SV=2
Length = 599
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 33/181 (18%)
Query: 33 NEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTE-QPVAQVCTNCGVNMGE- 90
+EIFDC+ C + S N RH + + + C +C+ + + QV + ++ +
Sbjct: 286 HEIFDCQECMKKFISA--NQLKRHMITHSEKRPYNCEICNKSFKRLDQVGAHKVIHSEDK 343
Query: 91 -YFCDIC--KFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLR-NNHLCIE 146
Y C +C F ++ K + E F C C + + T HL I
Sbjct: 344 PYQCKLCGKGFAHRNVYKNH--------KKTHSEERPFQCDACKALFRTPFSLQRHLLIH 395
Query: 147 NSMH----HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202
NS HHC ++ R T+ +H + HE K KY C +C+K+ +
Sbjct: 396 NSERTFKCHHCDATFK------RKDTL-----NVHVQVVHERHK--KYRCELCNKAFVTP 442
Query: 203 S 203
S
Sbjct: 443 S 443
>sp|Q9WUB0|HOIL1_MOUSE RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Mus
musculus GN=Rbck1 PE=1 SV=2
Length = 508
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 145 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 204
+ N+ CP+CY L + +C HT EC I+ + C S
Sbjct: 272 VLNTEPTECPVCYSVLAPG-EAVVLRECLHTFCRECLQGTIRNSQEAEVACPFIDSTYSC 330
Query: 205 TWKRIDEEIEATVMPEDYR 223
K ++ EI A + PEDY+
Sbjct: 331 PGKLLEREIRALLSPEDYQ 349
>sp|P18750|ZO61_XENLA Oocyte zinc finger protein XlCOF6.1 (Fragment) OS=Xenopus laevis
PE=3 SV=1
Length = 224
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 58 LVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGIC- 116
R+ V + + E+P + C+ CG + CD+ + Y + F C +CG C
Sbjct: 99 FARRSVLEAHQKIHTGERPFS--CSECGKGFIKQ-CDLARHYRTHTGEKPFPCPECGKCF 155
Query: 117 ----------RIGGRENYFHCKRCGSCYSTSLRNNHL 143
R E F C CG C++ +N+HL
Sbjct: 156 TQSMQLIRHRRTHTGEKPFACSECGKCFA---QNSHL 189
>sp|P36078|HOT13_YEAST Helper of Tim protein 13 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HOT13 PE=1 SV=1
Length = 116
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 27 IRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQ-VICSVCDTEQPVAQ------ 79
IR CC++ + C CH E +S +P ++++L+ K +IC VC E A+
Sbjct: 29 IRFKCCDKYYACFECHQELSS---HPLEKYDLLDDANKHLIICGVCRHEMTFAEYYDYNS 85
Query: 80 --VCTNC 84
+C NC
Sbjct: 86 NLICPNC 92
>sp|D2HWM5|RFWD3_AILME E3 ubiquitin-protein ligase RFWD3 OS=Ailuropoda melanoleuca
GN=RFWD3 PE=3 SV=1
Length = 773
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 153 CPICYEYLFDSL-RNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKS------VIDMSRT 205
C IC+E+ ++ + ++CGH +C + +K CP C+K V+ +RT
Sbjct: 287 CTICFEHWTNAGDHRLSALRCGHLFGYKCISKWLKGQARKCPQCNKKAKHSDIVVLYART 346
Query: 206 WKRID----EEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKS 254
+ +D E ++++++ E K+ + C + ++ +CS S
Sbjct: 347 LRALDTSEHERMKSSLLKEQMLRKQAELESAQCR----LQLQVLTDECSKLHS 395
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 144 CIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199
+EN + C IC EY +++ + C H+ C +E +KR K CPIC K +
Sbjct: 397 VLENELQ--CIICSEYFIEAV----TLNCAHSFCSYCINEWMKR-KIECPICRKDI 445
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 144 CIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199
+EN + C IC EY +++ + C H+ C +E +KR K CPIC K +
Sbjct: 396 VLENELQ--CIICSEYFIEAV----TLNCAHSFCSYCINEWMKR-KIECPICRKDI 444
>sp|A8MQ27|NEU1B_HUMAN E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens GN=NEURL1B PE=1
SV=1
Length = 555
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 161 FDSLRNTTVMKCGHTMHC-ECYHEMIKRDKYCCPICSKSVIDMSRTWK 207
FD +T + CGH C C + ++ + CCPIC + + D+ + ++
Sbjct: 507 FDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKIYR 554
>sp|Q62921|HOIL1_RAT RanBP-type and C3HC4-type zinc finger-containing protein 1
OS=Rattus norvegicus GN=Rbck1 PE=1 SV=3
Length = 508
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 145 IENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDK---YCCPICSKSVID 201
+ N+ CP+CY L + +C HT EC I+ + CP +
Sbjct: 272 VLNTEPAECPVCYSVLAPG-EAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNT--- 327
Query: 202 MSRTWKRIDEEIEATVMPEDYR 223
S K ++ EI A + PEDY+
Sbjct: 328 YSCPGKLLEREIRALLSPEDYQ 349
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.493
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,455,029
Number of Sequences: 539616
Number of extensions: 4242442
Number of successful extensions: 17797
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 330
Number of HSP's that attempted gapping in prelim test: 17441
Number of HSP's gapped (non-prelim): 646
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)