Query 024483
Match_columns 267
No_of_seqs 222 out of 693
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 08:59:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 2E-56 6.8E-61 373.9 11.1 139 3-151 4-142 (143)
2 2k2d_A Ring finger and CHY zin 100.0 1.1E-31 3.9E-36 204.4 2.9 75 192-266 1-75 (79)
3 2ecm_A Ring finger and CHY zin 99.4 7.6E-14 2.6E-18 96.0 2.7 52 148-200 3-54 (55)
4 1iym_A EL5; ring-H2 finger, ub 99.3 5.9E-13 2E-17 91.7 3.7 49 150-200 5-54 (55)
5 2ecl_A Ring-box protein 2; RNF 99.3 1.1E-12 3.7E-17 98.5 5.1 49 150-200 26-75 (81)
6 2ep4_A Ring finger protein 24; 99.3 5.6E-13 1.9E-17 97.3 2.4 56 146-203 11-66 (74)
7 2kiz_A E3 ubiquitin-protein li 99.3 9.6E-13 3.3E-17 94.8 3.3 53 146-200 10-62 (69)
8 1x4j_A Ring finger protein 38; 99.3 5.4E-13 1.9E-17 97.9 1.7 53 148-202 21-73 (75)
9 1v87_A Deltex protein 2; ring- 99.3 2.3E-12 7.9E-17 101.3 3.7 56 147-202 22-95 (114)
10 2ect_A Ring finger protein 126 99.2 2.7E-12 9.3E-17 94.5 3.3 52 148-201 13-64 (78)
11 2l0b_A E3 ubiquitin-protein li 99.2 2.4E-12 8.3E-17 98.3 2.9 51 148-200 38-88 (91)
12 3ng2_A RNF4, snurf, ring finge 99.2 4.5E-12 1.5E-16 91.2 2.3 52 148-200 8-62 (71)
13 2ea6_A Ring finger protein 4; 99.2 5.1E-12 1.8E-16 90.1 2.6 52 148-200 13-67 (69)
14 1g25_A CDK-activating kinase a 99.2 1.4E-11 4.8E-16 87.9 4.2 51 150-200 3-54 (65)
15 2xeu_A Ring finger protein 4; 99.2 7.5E-12 2.6E-16 88.0 2.6 51 150-201 3-56 (64)
16 1e4u_A Transcriptional repress 99.1 7.4E-12 2.5E-16 94.1 0.2 61 149-211 10-72 (78)
17 1chc_A Equine herpes virus-1 r 99.1 2E-11 7E-16 87.3 2.3 50 149-202 4-53 (68)
18 2ecn_A Ring finger protein 141 99.1 3.6E-12 1.2E-16 92.0 -1.9 53 148-206 13-65 (70)
19 2ct2_A Tripartite motif protei 99.1 4.2E-11 1.4E-15 89.4 3.2 52 149-200 14-67 (88)
20 3dpl_R Ring-box protein 1; ubi 99.1 5.8E-11 2E-15 94.2 3.9 50 150-200 48-100 (106)
21 2d8t_A Dactylidin, ring finger 99.1 4.1E-11 1.4E-15 87.0 2.7 48 148-200 13-60 (71)
22 2ysl_A Tripartite motif-contai 99.0 1.5E-10 5.3E-15 83.7 3.4 49 148-200 18-68 (73)
23 2csy_A Zinc finger protein 183 99.0 9E-11 3.1E-15 87.1 2.1 47 149-200 14-60 (81)
24 2djb_A Polycomb group ring fin 99.0 9.2E-11 3.2E-15 85.3 2.1 49 149-201 14-62 (72)
25 1t1h_A Gspef-atpub14, armadill 99.0 3.8E-10 1.3E-14 82.8 5.4 49 148-200 6-54 (78)
26 4ap4_A E3 ubiquitin ligase RNF 99.0 1.4E-10 4.9E-15 91.9 3.0 53 148-201 5-60 (133)
27 2ecy_A TNF receptor-associated 99.0 1.6E-10 5.4E-15 82.6 2.9 48 150-201 15-62 (66)
28 2yur_A Retinoblastoma-binding 98.9 2E-10 6.8E-15 84.2 1.7 51 150-204 15-67 (74)
29 4ayc_A E3 ubiquitin-protein li 98.9 3.4E-10 1.2E-14 92.5 3.0 46 151-201 54-99 (138)
30 2d8s_A Cellular modulator of i 98.9 2.5E-10 8.6E-15 86.2 2.0 51 148-200 13-69 (80)
31 2ysj_A Tripartite motif-contai 98.9 5.7E-10 1.9E-14 78.8 2.9 43 149-195 19-63 (63)
32 2ecj_A Tripartite motif-contai 98.9 7.1E-10 2.4E-14 76.6 3.3 43 149-195 14-58 (58)
33 3lrq_A E3 ubiquitin-protein li 98.9 2.6E-10 9E-15 88.4 1.2 48 150-200 22-69 (100)
34 4a0k_B E3 ubiquitin-protein li 98.9 2.1E-10 7.3E-15 92.7 0.5 50 149-199 47-110 (117)
35 3fl2_A E3 ubiquitin-protein li 98.9 3.7E-10 1.3E-14 90.3 1.6 48 150-201 52-99 (124)
36 2egp_A Tripartite motif-contai 98.9 3.1E-10 1.1E-14 83.1 0.7 48 149-200 11-64 (79)
37 3ztg_A E3 ubiquitin-protein li 98.8 4.3E-10 1.5E-14 85.0 1.0 48 149-200 12-61 (92)
38 2ecw_A Tripartite motif-contai 98.8 1.5E-09 5E-14 79.9 3.7 48 149-200 18-70 (85)
39 1rmd_A RAG1; V(D)J recombinati 98.8 7.4E-10 2.5E-14 87.4 2.1 62 150-215 23-86 (116)
40 2ecv_A Tripartite motif-contai 98.8 1.3E-09 4.4E-14 80.2 2.8 48 149-200 18-70 (85)
41 2ckl_B Ubiquitin ligase protei 98.8 1.6E-09 5.6E-14 90.5 3.7 48 151-201 55-102 (165)
42 2y43_A E3 ubiquitin-protein li 98.8 1E-09 3.5E-14 84.3 2.0 48 150-201 22-69 (99)
43 4ap4_A E3 ubiquitin ligase RNF 98.8 1.1E-09 3.9E-14 86.6 2.3 53 148-201 70-125 (133)
44 2ckl_A Polycomb group ring fin 98.8 1.5E-09 5E-14 84.8 2.4 49 149-201 14-62 (108)
45 3l11_A E3 ubiquitin-protein li 98.8 1.1E-09 3.8E-14 86.2 1.3 48 150-201 15-62 (115)
46 3hct_A TNF receptor-associated 98.8 1.4E-09 4.8E-14 86.4 1.7 73 150-237 18-93 (118)
47 1z6u_A NP95-like ring finger p 98.7 2.8E-09 9.5E-14 88.8 2.7 48 150-201 78-125 (150)
48 1jm7_A BRCA1, breast cancer ty 98.7 4.1E-09 1.4E-13 82.0 2.7 47 150-200 21-69 (112)
49 2vje_A E3 ubiquitin-protein li 98.6 1.1E-08 3.8E-13 73.5 1.5 52 146-202 4-58 (64)
50 2vje_B MDM4 protein; proto-onc 98.5 1.6E-08 5.3E-13 72.5 1.1 50 148-202 5-57 (63)
51 1bor_A Transcription factor PM 98.5 1.1E-08 3.6E-13 71.4 0.2 46 147-200 3-48 (56)
52 4ic3_A E3 ubiquitin-protein li 98.5 1.8E-08 6.3E-13 74.0 0.9 44 150-202 24-68 (74)
53 3knv_A TNF receptor-associated 98.5 1.4E-08 4.7E-13 83.8 -0.1 47 149-199 30-76 (141)
54 1jm7_B BARD1, BRCA1-associated 98.5 3E-08 1E-12 78.5 1.1 45 150-200 22-66 (117)
55 3hcs_A TNF receptor-associated 98.4 4.2E-08 1.4E-12 82.2 1.4 63 150-216 18-81 (170)
56 2y1n_A E3 ubiquitin-protein li 98.4 1.2E-07 4.3E-12 90.4 3.3 49 149-201 331-379 (389)
57 2ct0_A Non-SMC element 1 homol 98.3 1.9E-07 6.3E-12 69.8 2.7 48 150-200 15-63 (74)
58 2kr4_A Ubiquitin conjugation f 98.3 1.7E-07 5.9E-12 70.8 2.3 47 149-200 13-59 (85)
59 2ecg_A Baculoviral IAP repeat- 98.3 1.2E-07 4.2E-12 69.5 1.2 44 150-202 25-69 (75)
60 2kre_A Ubiquitin conjugation f 98.3 2.5E-07 8.7E-12 72.1 2.8 47 149-200 28-74 (100)
61 2ea5_A Cell growth regulator w 98.3 2.1E-07 7.2E-12 67.7 2.0 49 147-204 12-61 (68)
62 2c2l_A CHIP, carboxy terminus 98.3 4.4E-07 1.5E-11 79.9 4.3 51 146-200 204-254 (281)
63 1wgm_A Ubiquitin conjugation f 98.3 4.2E-07 1.5E-11 70.6 3.1 47 149-200 21-68 (98)
64 2yu4_A E3 SUMO-protein ligase 98.2 6.4E-07 2.2E-11 68.6 3.1 47 149-198 6-59 (94)
65 1vyx_A ORF K3, K3RING; zinc-bi 98.2 5.8E-07 2E-11 64.2 2.6 51 146-200 2-58 (60)
66 1wim_A KIAA0161 protein; ring 98.2 4.9E-07 1.7E-11 68.8 2.3 49 149-198 4-61 (94)
67 2yho_A E3 ubiquitin-protein li 98.1 4.3E-07 1.5E-11 67.8 0.7 47 150-205 18-65 (79)
68 3k1l_B Fancl; UBC, ring, RWD, 98.0 1.3E-06 4.4E-11 82.5 0.6 53 148-200 306-372 (381)
69 2f42_A STIP1 homology and U-bo 97.9 6.2E-06 2.1E-10 71.0 4.3 48 149-200 105-152 (179)
70 3htk_C E3 SUMO-protein ligase 97.7 1E-05 3.4E-10 73.7 2.0 50 148-200 179-231 (267)
71 3t6p_A Baculoviral IAP repeat- 97.7 6.2E-06 2.1E-10 77.4 0.1 44 150-202 295-339 (345)
72 2bay_A PRE-mRNA splicing facto 97.2 0.0001 3.4E-09 52.5 1.7 48 149-200 2-49 (61)
73 3vk6_A E3 ubiquitin-protein li 97.0 0.00024 8.1E-09 55.9 2.4 50 152-204 3-52 (101)
74 3nw0_A Non-structural maintena 95.0 0.013 4.4E-07 52.1 3.1 47 150-199 180-227 (238)
75 2ko5_A Ring finger protein Z; 90.4 0.11 3.7E-06 40.5 1.8 44 150-200 28-72 (99)
76 2jrp_A Putative cytoplasmic pr 90.0 0.088 3E-06 39.7 1.0 28 67-99 33-60 (81)
77 3a43_A HYPD, hydrogenase nicke 89.8 0.18 6.3E-06 41.1 2.9 39 225-263 67-124 (139)
78 2jun_A Midline-1; B-BOX, TRIM, 87.4 0.25 8.6E-06 37.1 2.0 75 150-236 3-79 (101)
79 2kdx_A HYPA, hydrogenase/ureas 83.8 0.28 9.5E-06 38.7 0.7 38 224-263 69-107 (119)
80 3v43_A Histone acetyltransfera 82.3 0.27 9.2E-06 38.4 0.1 75 119-197 21-111 (112)
81 2lbm_A Transcriptional regulat 82.1 0.94 3.2E-05 37.3 3.3 49 145-198 58-117 (142)
82 2ysm_A Myeloid/lymphoid or mix 81.6 0.24 8.3E-06 38.3 -0.4 80 112-198 9-104 (111)
83 2kwj_A Zinc finger protein DPF 75.4 0.18 6E-06 39.7 -3.0 85 111-200 2-110 (114)
84 2jne_A Hypothetical protein YF 75.2 1.7 5.9E-05 33.8 2.7 9 89-97 80-88 (101)
85 4bbq_A Lysine-specific demethy 72.1 0.92 3.1E-05 35.1 0.4 46 151-197 60-113 (117)
86 2ysm_A Myeloid/lymphoid or mix 69.1 4.6 0.00016 30.9 3.9 69 64-136 6-81 (111)
87 1weo_A Cellulose synthase, cat 62.3 7.4 0.00025 29.8 3.7 56 145-200 11-69 (93)
88 2lri_C Autoimmune regulator; Z 56.3 7.5 0.00026 27.6 2.7 45 149-198 11-59 (66)
89 1zfo_A LAsp-1; LIM domain, zin 52.5 3.2 0.00011 25.1 0.2 29 150-181 3-31 (31)
90 2dkt_A Ring finger and CHY zin 52.3 4.7 0.00016 33.2 1.2 31 89-119 97-127 (143)
91 1we9_A PHD finger family prote 51.4 1.2 4.3E-05 30.9 -2.1 49 149-198 5-58 (64)
92 3mjh_B Early endosome antigen 49.9 8.2 0.00028 24.3 1.8 15 189-203 5-19 (34)
93 2k4x_A 30S ribosomal protein S 49.8 11 0.00039 25.8 2.7 20 78-97 18-43 (55)
94 1g47_A Pinch protein; LIM doma 49.8 6.9 0.00024 27.2 1.6 45 147-202 8-52 (77)
95 2jrp_A Putative cytoplasmic pr 49.7 8 0.00027 29.0 2.0 26 65-90 18-43 (81)
96 2egq_A FHL1 protein; LIM domai 49.4 5.2 0.00018 28.0 0.9 43 148-201 13-58 (77)
97 3uk3_C Zinc finger protein 217 47.7 16 0.00056 22.8 3.2 16 189-204 4-19 (57)
98 1x61_A Thyroid receptor intera 47.1 7.8 0.00027 26.6 1.5 41 149-200 4-44 (72)
99 3lqh_A Histone-lysine N-methyl 44.9 5.5 0.00019 33.9 0.5 51 151-201 3-66 (183)
100 1f62_A Transcription factor WS 44.6 8.7 0.0003 25.2 1.4 45 152-198 2-50 (51)
101 3j20_Y 30S ribosomal protein S 43.9 9.6 0.00033 25.7 1.5 11 77-87 18-28 (50)
102 2k16_A Transcription initiatio 43.8 4 0.00014 29.2 -0.5 48 151-200 19-70 (75)
103 1x63_A Skeletal muscle LIM-pro 43.6 6.7 0.00023 27.7 0.7 42 149-201 14-55 (82)
104 1wil_A KIAA1045 protein; ring 42.9 21 0.00073 27.1 3.4 32 148-184 13-47 (89)
105 1bbo_A Human enhancer-binding 42.1 13 0.00046 23.3 2.0 15 190-204 2-16 (57)
106 2l5u_A Chromodomain-helicase-D 39.8 11 0.00036 26.1 1.3 48 147-198 8-58 (61)
107 3v43_A Histone acetyltransfera 39.0 25 0.00085 26.9 3.4 27 170-196 30-62 (112)
108 1x4s_A Protein FON, zinc finge 39.0 12 0.00043 26.3 1.5 24 64-87 10-35 (59)
109 1vq8_Z 50S ribosomal protein L 38.7 11 0.00037 28.2 1.2 34 76-120 25-58 (83)
110 1iml_A CRIP, cysteine rich int 38.6 7 0.00024 27.3 0.1 39 152-202 2-40 (76)
111 1x4l_A Skeletal muscle LIM-pro 38.5 14 0.00047 25.4 1.7 40 150-200 5-46 (72)
112 3ql9_A Transcriptional regulat 38.1 20 0.00069 28.8 2.8 51 145-200 52-113 (129)
113 1wyh_A SLIM 2, skeletal muscle 37.6 7.9 0.00027 26.5 0.3 41 150-201 5-45 (72)
114 2jvx_A NF-kappa-B essential mo 37.3 11 0.00037 22.7 0.8 16 189-204 3-18 (28)
115 1x6a_A LIMK-2, LIM domain kina 36.8 12 0.00041 26.3 1.2 39 150-201 15-53 (81)
116 2kmk_A Zinc finger protein GFI 36.4 23 0.0008 23.6 2.6 20 188-207 28-47 (82)
117 2ehe_A Four and A half LIM dom 36.2 13 0.00045 26.2 1.3 41 149-200 14-54 (82)
118 1x4k_A Skeletal muscle LIM-pro 34.8 13 0.00045 25.4 1.1 41 150-201 5-45 (72)
119 1znf_A 31ST zinc finger from X 34.7 22 0.00074 18.3 1.8 15 190-204 2-16 (27)
120 2cu8_A Cysteine-rich protein 2 34.5 11 0.00037 26.3 0.6 41 149-201 8-48 (76)
121 1x68_A FHL5 protein; four-and- 34.3 15 0.00053 25.5 1.4 40 150-200 5-46 (76)
122 2dj7_A Actin-binding LIM prote 33.9 17 0.00057 25.9 1.6 41 149-201 14-54 (80)
123 2fiy_A Protein FDHE homolog; F 33.4 16 0.00054 33.4 1.7 50 189-255 182-231 (309)
124 2co8_A NEDD9 interacting prote 33.3 12 0.00042 26.7 0.8 43 148-202 13-55 (82)
125 1vq8_1 50S ribosomal protein L 33.2 15 0.00052 25.7 1.2 28 223-253 12-39 (57)
126 1qxf_A GR2, 30S ribosomal prot 33.0 16 0.00054 26.4 1.2 35 65-99 7-47 (66)
127 1klr_A Zinc finger Y-chromosom 32.9 23 0.0008 18.4 1.8 17 189-205 2-18 (30)
128 2adr_A ADR1; transcription reg 32.7 21 0.00071 22.6 1.8 15 190-204 3-17 (60)
129 3a7q_B Low-density lipoprotein 31.8 35 0.0012 21.9 2.7 32 122-154 10-43 (44)
130 2m0e_A Zinc finger and BTB dom 31.7 26 0.0009 18.0 1.9 16 189-204 2-17 (29)
131 1ard_A Yeast transcription fac 31.6 27 0.00093 18.1 1.9 16 189-204 2-17 (29)
132 4ayb_P DNA-directed RNA polyme 31.4 24 0.00081 23.9 1.8 10 106-115 22-31 (48)
133 2cup_A Skeletal muscle LIM-pro 30.7 14 0.00048 27.0 0.7 40 150-200 5-44 (101)
134 3iz5_l 60S ribosomal protein L 30.7 18 0.00061 27.8 1.3 30 224-256 12-48 (94)
135 2e6s_A E3 ubiquitin-protein li 30.6 16 0.00053 26.7 0.9 65 121-197 7-76 (77)
136 3u5c_f 40S ribosomal protein S 30.1 23 0.00079 28.9 2.0 22 77-98 117-146 (152)
137 1ajj_A LR5, low-density lipopr 30.0 29 0.00098 21.4 2.0 31 123-154 5-37 (37)
138 2kvf_A Zinc finger and BTB dom 30.0 20 0.0007 18.7 1.2 16 189-204 3-18 (28)
139 2lce_A B-cell lymphoma 6 prote 30.0 32 0.0011 22.9 2.5 16 189-204 17-32 (74)
140 2cor_A Pinch protein; LIM doma 29.9 20 0.00067 25.4 1.4 42 148-202 13-54 (79)
141 1p7a_A BF3, BKLF, kruppel-like 29.9 30 0.001 19.4 2.0 17 188-204 10-26 (37)
142 1x5w_A Zinc finger protein 64, 29.6 22 0.00076 23.4 1.6 32 188-219 36-67 (70)
143 4a18_A RPL37, ribosomal protei 29.5 18 0.0006 27.8 1.1 30 224-256 12-48 (94)
144 1x3h_A Leupaxin; paxillin fami 29.4 20 0.00068 25.0 1.3 39 150-201 15-53 (80)
145 1mm2_A MI2-beta; PHD, zinc fin 29.3 15 0.0005 25.4 0.5 48 148-199 7-57 (61)
146 3u5c_b RP61, YS20, 40S ribosom 28.9 31 0.0011 25.8 2.3 36 64-99 33-74 (82)
147 2gmg_A Hypothetical protein PF 28.7 23 0.00078 27.7 1.6 33 226-259 65-97 (105)
148 2ayj_A 50S ribosomal protein L 28.4 32 0.0011 24.0 2.2 26 62-87 16-42 (56)
149 3j20_W 30S ribosomal protein S 28.3 22 0.00075 25.4 1.3 35 64-98 14-54 (63)
150 2fiy_A Protein FDHE homolog; F 28.2 42 0.0014 30.6 3.6 25 63-87 206-231 (309)
151 1wep_A PHF8; structural genomi 28.2 52 0.0018 23.5 3.4 48 151-200 13-65 (79)
152 4gzn_C ZFP-57, zinc finger pro 27.9 43 0.0015 22.5 2.8 40 189-239 4-43 (60)
153 1vd4_A Transcription initiatio 27.9 35 0.0012 22.3 2.3 10 80-89 16-25 (62)
154 3f6q_B LIM and senescent cell 27.9 19 0.00064 24.3 0.9 44 148-202 9-52 (72)
155 2kvg_A Zinc finger and BTB dom 27.6 20 0.00069 18.8 0.9 16 189-204 3-18 (27)
156 2kvh_A Zinc finger and BTB dom 27.5 24 0.00083 18.3 1.2 16 189-204 3-18 (27)
157 2elr_A Zinc finger protein 406 27.3 34 0.0012 18.9 1.9 18 188-205 8-25 (36)
158 1paa_A Yeast transcription fac 27.2 30 0.001 18.1 1.6 16 189-204 2-17 (30)
159 1llm_C Chimera of ZIF23-GCN4; 26.9 39 0.0013 23.2 2.5 15 189-203 31-45 (88)
160 3lpe_B DNA-directed RNA polyme 26.8 25 0.00086 24.6 1.4 19 67-86 3-21 (59)
161 3gox_A Restriction endonucleas 26.7 55 0.0019 28.3 3.8 73 117-200 68-148 (200)
162 1ryq_A DNA-directed RNA polyme 26.6 33 0.0011 24.9 2.0 25 62-87 8-32 (69)
163 3shb_A E3 ubiquitin-protein li 26.5 76 0.0026 22.9 4.1 14 122-135 39-52 (77)
164 1twf_L ABC10-alpha, DNA-direct 26.4 29 0.00099 25.0 1.7 7 109-115 47-53 (70)
165 3v2d_5 50S ribosomal protein L 26.4 24 0.00081 24.7 1.2 30 227-261 29-58 (60)
166 1rim_A E6APC2 peptide; E6-bind 26.3 35 0.0012 19.0 1.9 17 189-205 2-18 (33)
167 1x6e_A Zinc finger protein 24; 25.9 24 0.00083 23.4 1.2 14 189-202 14-27 (72)
168 1rik_A E6APC1 peptide; E6-bind 25.9 26 0.00088 18.2 1.1 16 189-204 2-17 (29)
169 2m0f_A Zinc finger and BTB dom 25.8 28 0.00097 17.9 1.3 16 189-204 2-17 (29)
170 2cur_A Skeletal muscle LIM-pro 25.4 29 0.001 23.4 1.6 38 150-200 5-42 (69)
171 2d9h_A Zinc finger protein 692 25.3 64 0.0022 21.5 3.4 17 189-205 7-23 (78)
172 2m0d_A Zinc finger and BTB dom 25.3 29 0.00099 18.0 1.3 16 189-204 3-18 (30)
173 2cuq_A Four and A half LIM dom 25.0 33 0.0011 23.8 1.8 39 149-200 14-52 (80)
174 3u5n_A E3 ubiquitin-protein li 24.7 21 0.00072 30.2 0.8 45 148-199 5-55 (207)
175 1v6g_A Actin binding LIM prote 24.6 27 0.00093 24.4 1.3 40 149-201 14-53 (81)
176 2ct1_A Transcriptional repress 24.5 39 0.0013 22.6 2.1 15 189-203 15-29 (77)
177 2l3k_A Rhombotin-2, linker, LI 24.5 23 0.00079 27.2 1.0 38 152-200 10-47 (123)
178 2lvu_A Zinc finger and BTB dom 30.3 16 0.00054 18.9 0.0 15 189-203 2-16 (26)
179 2d8x_A Protein pinch; LIM doma 24.4 24 0.00082 24.0 0.9 40 150-202 5-44 (70)
180 3i2d_A E3 SUMO-protein ligase 23.7 33 0.0011 32.3 2.0 48 150-200 249-299 (371)
181 2yt5_A Metal-response element- 23.5 45 0.0015 22.8 2.3 10 150-159 52-61 (66)
182 3iz6_X 40S ribosomal protein S 23.4 38 0.0013 25.5 1.9 35 65-99 36-76 (86)
183 2cs3_A Protein C14ORF4, MY039 23.4 45 0.0015 25.2 2.3 65 148-216 13-86 (93)
184 2xzm_6 RPS27E; ribosome, trans 23.2 30 0.001 25.8 1.3 36 64-99 31-72 (81)
185 2emz_A ZFP-95, zinc finger pro 22.7 74 0.0025 18.8 3.0 18 188-205 11-28 (46)
186 2elx_A Zinc finger protein 406 22.5 33 0.0011 18.8 1.2 17 188-204 6-22 (35)
187 4fo9_A E3 SUMO-protein ligase 22.4 36 0.0012 31.9 2.0 48 150-200 215-265 (360)
188 2kgg_A Histone demethylase jar 22.4 9.5 0.00032 25.4 -1.5 44 152-196 4-52 (52)
189 2puy_A PHD finger protein 21A; 22.4 1.1E+02 0.0036 20.6 4.0 23 111-135 6-28 (60)
190 1a1h_A QGSR zinc finger peptid 22.1 56 0.0019 22.1 2.5 17 188-204 33-49 (90)
191 2els_A Zinc finger protein 406 21.8 36 0.0012 19.0 1.3 17 188-204 8-24 (36)
192 2zkr_2 60S ribosomal protein L 21.7 32 0.0011 26.5 1.3 31 224-257 12-49 (97)
193 2v3b_B Rubredoxin 2, rubredoxi 21.6 49 0.0017 22.6 2.0 14 88-101 1-15 (55)
194 1ptq_A Protein kinase C delta 21.6 53 0.0018 21.0 2.2 11 104-114 25-35 (50)
195 2ytb_A Zinc finger protein 32; 21.5 39 0.0013 19.5 1.4 17 188-204 10-26 (42)
196 2dar_A PDZ and LIM domain prot 21.4 33 0.0011 24.6 1.2 43 146-201 21-63 (90)
197 2yte_A Zinc finger protein 473 21.2 51 0.0017 18.9 1.9 17 188-204 9-25 (42)
198 2lvt_A Zinc finger and BTB dom 26.8 20 0.00069 18.9 0.0 15 189-203 2-16 (29)
199 2elv_A Zinc finger protein 406 20.6 38 0.0013 18.9 1.2 17 188-204 8-24 (36)
200 4esj_A Type-2 restriction enzy 20.6 41 0.0014 30.1 1.9 19 79-97 35-63 (257)
201 2lvr_A Zinc finger and BTB dom 25.7 22 0.00074 18.7 0.0 16 189-204 3-18 (30)
202 2elt_A Zinc finger protein 406 20.2 40 0.0014 18.6 1.2 17 188-204 8-24 (36)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=2e-56 Score=373.89 Aligned_cols=139 Identities=42% Similarity=1.050 Sum_probs=132.5
Q ss_pred CCccccccCCCCccCccccccCcceEcCCCCCcccCcchHHhhhcCCCCCCCCccccccccceeeeCCCCccccccccCC
Q 024483 3 GSANERITFGKMGYGCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCT 82 (267)
Q Consensus 3 ~~~~~~~~~~~~~~gC~HY~r~c~i~~pcC~~~y~Cr~CHde~~~~~~~~~~~H~~~r~~~~~v~C~~C~~~q~v~~~C~ 82 (267)
|+....+|++++++||+||+|+|+|+||||++|||||+||||++ +|+++|+++++|+||+|+++|++++.|+
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~--------dH~l~r~~~~~vlCg~C~~~q~~~~~C~ 75 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE--------DHQLDRFKVKEVQCINCEKLQHAQQTCE 75 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS--------SSCCCSSSCCCEEESSSCCEECSCSBCS
T ss_pred CCCCcccccccCcCCCcccCCCeeEECCCCCCccchhhhhcccc--------ccccchhccceeeecccCccccccCcCC
Confidence 55666889999999999999999999999999999999999974 7999999999999999999999999999
Q ss_pred cCCCccceeeccccccccCCCCcCeeecCCCCcccccCccceeecCccCccccccccCcceeecCCCCC
Q 024483 83 NCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHH 151 (267)
Q Consensus 83 ~Cg~~f~~y~C~~C~l~dd~~~k~~yHC~~CgiCR~G~~~~~fHC~~C~~C~s~~l~~~H~C~e~~~~~ 151 (267)
+||+.||+|||+|||||| ++|+||||++|||||||+++|||||++||+|||++|+++|+|+|+++++
T Consensus 76 ~Cg~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 76 DCSTLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SSCCBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred CCCccceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 999999999999999997 4699999999999999999999999999999999999999999999865
No 2
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.97 E-value=1.1e-31 Score=204.40 Aligned_cols=75 Identities=41% Similarity=0.810 Sum_probs=40.4
Q ss_pred CCCCCccccchhHHhHHhHHHHHhcCCChhhhcCeeEEEcCCCCCccccceeEeeecCCCCCCccccccCCCCCC
Q 024483 192 CPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIAPPVLP 266 (267)
Q Consensus 192 CPiCrks~~dm~~~~~~lD~~i~~~pmP~~y~~~~v~I~CnDC~~~s~~~fH~lg~kC~~C~SyNT~~~~~~~~~ 266 (267)
||+|+||+.||+.+|++||++|+++|||++|++++|+|+||||+++|.++||||||||+.|+||||++++|+..|
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G~~~~ 75 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGGRRIS 75 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCCCCCC
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999875543
No 3
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.40 E-value=7.6e-14 Score=96.04 Aligned_cols=52 Identities=42% Similarity=0.875 Sum_probs=45.5
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
+.+..||||++.+.++...+++|+|||.||..|+.+|++. ..+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 4567899999998777677889999999999999999984 589999998764
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.33 E-value=5.9e-13 Score=91.70 Aligned_cols=49 Identities=29% Similarity=0.729 Sum_probs=41.3
Q ss_pred CCCCchhhhhhcccCCccEEec-cCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
...||||++.+.+ .+.+..|+ |||.||..|+.+|++ .+.+||+||+.+.
T Consensus 5 ~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELED-GEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCT-TSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCcCccCCccccC-CCceEECCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence 5689999998544 45677787 999999999999998 4789999998764
No 5
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=98.48 Aligned_cols=49 Identities=22% Similarity=0.539 Sum_probs=39.4
Q ss_pred CCCCchhhhhhcccCCccEEe-ccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~L-pCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
+..||||++++..+ +.+++| +|||.||..|+++|++. +.+||+||+.+.
T Consensus 26 ~~~C~iC~~~~~~~-~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 75 (81)
T 2ecl_A 26 MDACLRCQAENKQE-DCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWV 75 (81)
T ss_dssp TSCCTTHHHHTCTT-TCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCC
T ss_pred hccCcccccccCCC-ceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcc
Confidence 55799999986554 444455 59999999999999984 679999999875
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=5.6e-13 Score=97.26 Aligned_cols=56 Identities=23% Similarity=0.694 Sum_probs=46.6
Q ss_pred cCCCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchh
Q 024483 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS 203 (267)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~dm~ 203 (267)
+...+..||||++.+ .....+.+|||||.||..|+.+|++. +.+||+||+.+..+.
T Consensus 11 ~~~~~~~C~IC~~~~-~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLEDF-KPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCBC-CSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCccc-CCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccc
Confidence 445677899999984 45567788999999999999999984 569999999997653
No 7
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=9.6e-13 Score=94.77 Aligned_cols=53 Identities=25% Similarity=0.598 Sum_probs=44.4
Q ss_pred cCCCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
+......||||++.+ .....++.|||||.||..|+.+|+.. +.+||+||+.+.
T Consensus 10 ~~~~~~~C~IC~~~~-~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSIL-EEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCC-CSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSC
T ss_pred cCCCCCCCeeCCccc-cCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCcccc
Confidence 345567899999985 44467888999999999999999984 678999999886
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5.4e-13 Score=97.87 Aligned_cols=53 Identities=26% Similarity=0.592 Sum_probs=44.5
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccch
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~dm 202 (267)
.....||||++.+ ...+.++.|||||.||..|+.+|++ .+.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~-~~~~~~~~l~C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDF-ESRQLLRVLPCNHEFHAKCVDKWLK-ANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEEC-CBTCEEEEETTTEEEETTHHHHHHH-HCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCccc-CCCCeEEEECCCCHhHHHHHHHHHH-cCCcCcCcCCcCCCC
Confidence 4466799999985 4456788999999999999999998 467999999988643
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.25 E-value=2.3e-12 Score=101.32 Aligned_cols=56 Identities=25% Similarity=0.434 Sum_probs=43.5
Q ss_pred CCCCCCCchhhhhhcccC--------------CccEEeccCCccChhhHHHHhc----CCCCCCCCCCccccch
Q 024483 147 NSMHHHCPICYEYLFDSL--------------RNTTVMKCGHTMHCECYHEMIK----RDKYCCPICSKSVIDM 202 (267)
Q Consensus 147 ~~~~~~CpICle~lf~s~--------------~~v~~LpCGH~~H~~C~~~~~~----~~~~~CPiCrks~~dm 202 (267)
...+.+|||||++|.... ..++.|+|||.||..||.+|+. ..+.+||+||+.+..+
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 345678999999974422 2344789999999999999994 2467999999988754
No 10
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.24 E-value=2.7e-12 Score=94.47 Aligned_cols=52 Identities=25% Similarity=0.609 Sum_probs=43.9
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
.....||||++.+ .....+++|+|||.||..|+.+|++ .+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~-~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDY-ALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCC-CTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccc-cCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCC
Confidence 3457899999984 4446778899999999999999998 46899999999874
No 11
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.24 E-value=2.4e-12 Score=98.35 Aligned_cols=51 Identities=24% Similarity=0.509 Sum_probs=43.1
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
..+..||||++.+. ....++.|||||.||..|+.+|+. .+.+||+||+.+.
T Consensus 38 ~~~~~C~IC~~~~~-~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYV-KGDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECC-TTCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhc-CCCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCC
Confidence 34567999999854 446788899999999999999998 5679999999875
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.19 E-value=4.5e-12 Score=91.22 Aligned_cols=52 Identities=29% Similarity=0.658 Sum_probs=43.1
Q ss_pred CCCCCCchhhhhhccc---CCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
..+..||||++.+.+. ...++.++|||.||..|+.+|++ .+.+||+||+.+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKIN 62 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH-cCCCCCCCCCccC
Confidence 4467899999986543 24457899999999999999998 4579999999986
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=5.1e-12 Score=90.13 Aligned_cols=52 Identities=29% Similarity=0.646 Sum_probs=42.5
Q ss_pred CCCCCCchhhhhhccc---CCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
.....||||++.+.+. ...++.++|||.||..|+.+|+.. +.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 3456899999986543 233478999999999999999984 689999999875
No 14
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=1.4e-11 Score=87.88 Aligned_cols=51 Identities=25% Similarity=0.522 Sum_probs=41.8
Q ss_pred CCCCchhhh-hhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 150 HHHCPICYE-YLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle-~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
+..||||++ .+.+....+.+++|||.|+..|+.+|+..+..+||+||+.+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 467999999 655544444678999999999999997656789999999986
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.17 E-value=7.5e-12 Score=88.01 Aligned_cols=51 Identities=27% Similarity=0.663 Sum_probs=42.3
Q ss_pred CCCCchhhhhhccc---CCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 150 HHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 150 ~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
+..||||++.+.+. .+.+..++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 56899999986542 244578999999999999999984 6899999998863
No 16
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.11 E-value=7.4e-12 Score=94.13 Aligned_cols=61 Identities=23% Similarity=0.586 Sum_probs=47.9
Q ss_pred CCCCCchhhhhhcccCCccEEec--cCCccChhhHHHHhcCCCCCCCCCCccccchhHHhHHhHH
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMK--CGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDE 211 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~Lp--CGH~~H~~C~~~~~~~~~~~CPiCrks~~dm~~~~~~lD~ 211 (267)
.+..||||+|.+ +. .++.++| |||.|+..|+..+.....++||+||+.+..+...|+++|+
T Consensus 10 ~~~~CpICle~~-~~-~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~ 72 (78)
T 1e4u_A 10 DPVECPLCMEPL-EI-DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQ 72 (78)
T ss_dssp CCCBCTTTCCBC-CT-TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCCC
T ss_pred cCCcCCccCccC-cc-ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCCH
Confidence 456899999975 32 3455555 9999999999999865678999999999987777765543
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.10 E-value=2e-11 Score=87.34 Aligned_cols=50 Identities=26% Similarity=0.637 Sum_probs=42.1
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccch
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~dm 202 (267)
....||||++.+. .+++.+||||.||..|+.+|++ .+.+||+||+.+..+
T Consensus 4 ~~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPS---NYSMALPCLHAFCYVCITRWIR-QNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHhh
Confidence 4568999999852 3568899999999999999998 468999999998743
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.6e-12 Score=91.98 Aligned_cols=53 Identities=21% Similarity=0.530 Sum_probs=43.6
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchhHHh
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTW 206 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~dm~~~~ 206 (267)
.....||||++.+.+ ++|||||.||..|+.+|+. ...+||+||+.+......|
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCCccc
Confidence 345789999998532 7899999999999999998 5789999999987654444
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=4.2e-11 Score=89.37 Aligned_cols=52 Identities=29% Similarity=0.702 Sum_probs=42.8
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCC--CCCCCCCCcccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD--KYCCPICSKSVI 200 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~--~~~CPiCrks~~ 200 (267)
....||||++.+.++....+.|+|||.||..|+.+|+... ..+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3567999999865554447788999999999999999743 489999999875
No 20
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.07 E-value=5.8e-11 Score=94.21 Aligned_cols=50 Identities=18% Similarity=0.386 Sum_probs=37.5
Q ss_pred CCCCchhhhhhccc---CCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 150 HHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
+..|+||++++.++ ..+++.|+|||.||..|+.+||. .+.+||+||+.+.
T Consensus 48 ~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 48 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp TSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred hCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 34566666653321 22467789999999999999998 4789999999853
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=4.1e-11 Score=87.01 Aligned_cols=48 Identities=17% Similarity=0.397 Sum_probs=40.4
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
.....||||++.+ ...+.|+|||.||..|+.+|+. ...+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~----~~~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTC----VHPVSLPCKHVFCYLCVKGASW-LGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBC----SSEEEETTTEEEEHHHHHHCTT-CSSBCSSSCCBCC
T ss_pred CCCCCCccCCccc----CCCEEccCCCHHHHHHHHHHHH-CCCcCcCcCchhC
Confidence 3456799999975 2346789999999999999998 4689999999986
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=83.67 Aligned_cols=49 Identities=29% Similarity=0.721 Sum_probs=39.9
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhc--CCCCCCCCCCcccc
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK--RDKYCCPICSKSVI 200 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~--~~~~~CPiCrks~~ 200 (267)
.....||||++.+. ..+.|+|||.||..|+.+|+. ....+||+||+.+.
T Consensus 18 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCS----SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccC----CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 34568999999753 345679999999999999996 24679999999875
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=9e-11 Score=87.10 Aligned_cols=47 Identities=28% Similarity=0.525 Sum_probs=39.5
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
....||||++.+. ..++++|||+||..|+.+|+. ...+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ----NPVVTKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC----SEEECTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc----CeeEccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 3557999999852 234699999999999999997 4789999999986
No 24
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=9.2e-11 Score=85.32 Aligned_cols=49 Identities=33% Similarity=0.571 Sum_probs=40.3
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
....||||++.+.+ ++.+++|||.||..|+.+|+. ...+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFY-YSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHH-HCSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHH-cCCcCCCcCcccCc
Confidence 35679999997532 555569999999999999997 46899999998863
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.00 E-value=3.8e-10 Score=82.83 Aligned_cols=49 Identities=16% Similarity=0.440 Sum_probs=40.6
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
..+..||||++.| . ++ +.++|||+|++.|+.+|+..+..+||+|++.+.
T Consensus 6 ~~~~~C~IC~~~~-~--~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELM-K--DP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCC-S--SE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCccccc-c--CC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 3466899999975 3 23 457999999999999999865789999999985
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.99 E-value=1.4e-10 Score=91.90 Aligned_cols=53 Identities=28% Similarity=0.648 Sum_probs=43.4
Q ss_pred CCCCCCchhhhhhccc---CCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
+.+..||||++.+.+. .+.++.++|||+||..|+.+|++ ...+||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-hCCCCCCCCCcCcc
Confidence 3456899999986443 34458899999999999999998 46799999999873
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.6e-10 Score=82.61 Aligned_cols=48 Identities=21% Similarity=0.551 Sum_probs=39.4
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
+..||||++.+. +++ .++|||.||..|+.+|+.....+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~---~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLC---SPK-QTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEES---SCC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhc---Cee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 457999999752 233 389999999999999996567899999998863
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.93 E-value=2e-10 Score=84.22 Aligned_cols=51 Identities=22% Similarity=0.593 Sum_probs=40.0
Q ss_pred CCCCchhhhhhcccCCccEEec-cCCccChhhHHHHhcCC-CCCCCCCCccccchhH
Q 024483 150 HHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRD-KYCCPICSKSVIDMSR 204 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~~~~~-~~~CPiCrks~~dm~~ 204 (267)
+..||||++.+. ..+.|+ |||.||..|+.+|+... ..+||+||+.+.....
T Consensus 15 ~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 15 ELLCLICKDIMT----DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp GGSCSSSCCCCT----TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCcCCChHHh----CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 467999999753 234588 99999999999999742 3799999998764443
No 29
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.93 E-value=3.4e-10 Score=92.46 Aligned_cols=46 Identities=35% Similarity=0.852 Sum_probs=39.2
Q ss_pred CCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
..||||++.+. ..+.|||||+||..|+..|+. .+.+||+||+.+..
T Consensus 54 ~~C~iC~~~~~----~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFI----EAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCS----SEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC
T ss_pred CCCcccCcccC----CceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCC
Confidence 46999999753 345789999999999999998 56899999999864
No 30
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=2.5e-10 Score=86.22 Aligned_cols=51 Identities=29% Similarity=0.605 Sum_probs=40.6
Q ss_pred CCCCCCchhhhhhcccCCccEEeccC-----CccChhhHHHHhcCC-CCCCCCCCcccc
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKCG-----HTMHCECYHEMIKRD-KYCCPICSKSVI 200 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCG-----H~~H~~C~~~~~~~~-~~~CPiCrks~~ 200 (267)
+.+..|+||+++ |+...+ .++||+ |.||..||++|+..+ ..+||+||..+.
T Consensus 13 ~~~~~C~IC~~~-~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCE-GDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCC-CCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCcc-ccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 446789999998 444344 469996 999999999999743 369999999885
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=5.7e-10 Score=78.84 Aligned_cols=43 Identities=28% Similarity=0.809 Sum_probs=34.9
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcC--CCCCCCCC
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPIC 195 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~--~~~~CPiC 195 (267)
.+..||||++.+. ..++|+|||.||..|+.+|++. ...+||+|
T Consensus 19 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS----SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC----CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567999999753 3456799999999999999973 45789998
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=7.1e-10 Score=76.56 Aligned_cols=43 Identities=28% Similarity=0.900 Sum_probs=34.7
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcC--CCCCCCCC
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPIC 195 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~--~~~~CPiC 195 (267)
....||||++.+.+ .++|+|||.||..|+.+|+.. ...+||+|
T Consensus 14 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE----PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS----CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc----cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35679999998532 345899999999999999653 56899998
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.89 E-value=2.6e-10 Score=88.37 Aligned_cols=48 Identities=21% Similarity=0.504 Sum_probs=40.0
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
+..||||++.+ . +++..++|||.||..|+.+|+.....+||+||+.+.
T Consensus 22 ~~~C~IC~~~~-~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKL-R--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBC-S--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccc-c--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 35799999975 3 355559999999999999999854479999999985
No 34
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.89 E-value=2.1e-10 Score=92.74 Aligned_cols=50 Identities=22% Similarity=0.556 Sum_probs=0.9
Q ss_pred CCCCCchhhhhhccc--------------CCccEEeccCCccChhhHHHHhcCCCCCCCCCCccc
Q 024483 149 MHHHCPICYEYLFDS--------------LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199 (267)
Q Consensus 149 ~~~~CpICle~lf~s--------------~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~ 199 (267)
...+|+||+++|.+. ..++..++|||.||..|+++||. .+.+||+||+.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREW 110 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCee
Confidence 346899999886431 11344469999999999999998 478999999875
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.88 E-value=3.7e-10 Score=90.28 Aligned_cols=48 Identities=21% Similarity=0.618 Sum_probs=40.2
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
+..||||++.+. ..+.+||||+|+..|+..|+.....+||+||+.+..
T Consensus 52 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF----RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS----SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc----CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 357999999753 345679999999999999998666799999999964
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.87 E-value=3.1e-10 Score=83.12 Aligned_cols=48 Identities=33% Similarity=0.722 Sum_probs=39.2
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCC------CCCCCCCCcccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD------KYCCPICSKSVI 200 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~------~~~CPiCrks~~ 200 (267)
.+..||||++.+ .. + +.|+|||.|+..|+.+|+... ..+||+||+.+.
T Consensus 11 ~~~~C~IC~~~~-~~--p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 11 EEVTCPICLELL-TE--P-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCEETTTTEEC-SS--C-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cCCCCcCCCccc-CC--e-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 356799999974 32 3 458999999999999999742 679999999986
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.85 E-value=4.3e-10 Score=85.03 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=38.6
Q ss_pred CCCCCchhhhhhcccCCccEEec-cCCccChhhHHHHhcC-CCCCCCCCCcccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKR-DKYCCPICSKSVI 200 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~~~~-~~~~CPiCrks~~ 200 (267)
.+..||||++.|. ..+.|| |||+|+..|+.+|+.. +..+||+||+.+.
T Consensus 12 ~~~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMT----DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECS----SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhc----CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3567999999753 235688 9999999999999953 3479999999974
No 38
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.84 E-value=1.5e-09 Score=79.94 Aligned_cols=48 Identities=27% Similarity=0.615 Sum_probs=39.4
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCC-----CCCCCCCCcccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-----KYCCPICSKSVI 200 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~-----~~~CPiCrks~~ 200 (267)
....||||++.+ . ++ ++++|||.||..|+.+|+... ..+||+||+.+.
T Consensus 18 ~~~~C~IC~~~~-~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELL-K--EP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCC-S--SC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhh-C--cc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 356899999975 2 23 478999999999999999742 689999999886
No 39
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.84 E-value=7.4e-10 Score=87.40 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=45.3
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchh--HHhHHhHHHHHh
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS--RTWKRIDEEIEA 215 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~dm~--~~~~~lD~~i~~ 215 (267)
+..||||++.+. ++ +.++|||.|+..|+.+|+.....+||+||+.+.... .....+.++|..
T Consensus 23 ~~~C~IC~~~~~---~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 23 SISCQICEHILA---DP-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HTBCTTTCSBCS---SE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred CCCCCCCCcHhc---Cc-EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 457999999752 23 458999999999999999854679999999987422 223444554444
No 40
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.3e-09 Score=80.22 Aligned_cols=48 Identities=31% Similarity=0.739 Sum_probs=39.4
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcC-----CCCCCCCCCcccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-----DKYCCPICSKSVI 200 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~-----~~~~CPiCrks~~ 200 (267)
....||||++.+ . ..+.|+|||.||..|+.+|+.. ...+||+||+.+.
T Consensus 18 ~~~~C~IC~~~~-~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 18 EEVTCPICLELL-T---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCTTTCSCC-S---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCCccc-C---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 456899999975 2 2345799999999999999974 2689999999886
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.82 E-value=1.6e-09 Score=90.52 Aligned_cols=48 Identities=27% Similarity=0.701 Sum_probs=40.5
Q ss_pred CCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
..||||++.+. +++..++|||.||..|+..|+..+..+||+||+.+..
T Consensus 55 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 47999999753 3566669999999999999998657899999999853
No 42
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.81 E-value=1e-09 Score=84.29 Aligned_cols=48 Identities=27% Similarity=0.686 Sum_probs=39.6
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
...||||++.+. +++..++|||.||..|+..|+. ...+||+||+.+..
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCcccCChhhC---CcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 457999999753 2555559999999999999998 46899999999873
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.81 E-value=1.1e-09 Score=86.63 Aligned_cols=53 Identities=28% Similarity=0.648 Sum_probs=43.0
Q ss_pred CCCCCCchhhhhhccc---CCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
.....||||++.+.+. ...++.++|||.||..|+++|++ .+.+||+||+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH-HCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH-cCCCCCCCCCcCCh
Confidence 4567899999986442 23447889999999999999998 46799999999863
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.80 E-value=1.5e-09 Score=84.80 Aligned_cols=49 Identities=29% Similarity=0.675 Sum_probs=40.6
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
.+..||||++.+. +++..++|||+||..|+.+|+.. +.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred CcCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 3567999999753 35655699999999999999984 6899999999874
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.78 E-value=1.1e-09 Score=86.24 Aligned_cols=48 Identities=29% Similarity=0.874 Sum_probs=40.2
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
+..||||++.+. ..+.|+|||+|+..|+..|+..+..+||+||+.+..
T Consensus 15 ~~~C~iC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV----EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS----SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC----ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 346999999753 245679999999999999998667899999999864
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.78 E-value=1.4e-09 Score=86.42 Aligned_cols=73 Identities=22% Similarity=0.474 Sum_probs=51.0
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchhH-HhHHhHHHHHhcCCChhhhcCeeE
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR-TWKRIDEEIEATVMPEDYRHKKVW 228 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~dm~~-~~~~lD~~i~~~pmP~~y~~~~v~ 228 (267)
+..||||++.+.+ + +.++|||+|+..|+.+|+..+..+||+||+.+..... .-..+.++|.+ ..
T Consensus 18 ~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~-----------l~ 82 (118)
T 3hct_A 18 KYECPICLMALRE---A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILS-----------LM 82 (118)
T ss_dssp GGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHT-----------SE
T ss_pred CCCCCcCChhhcC---e-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHcc-----------ce
Confidence 4579999997532 3 5689999999999999998555699999999875321 11234444443 24
Q ss_pred EEc--CCCCCc
Q 024483 229 ILC--NDCNDT 237 (267)
Q Consensus 229 I~C--nDC~~~ 237 (267)
|.| ..|+.+
T Consensus 83 v~C~n~gC~~~ 93 (118)
T 3hct_A 83 VKCPNEGCLHK 93 (118)
T ss_dssp EECSSTTCCCE
T ss_pred eECCCCCCCCE
Confidence 667 567754
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.75 E-value=2.8e-09 Score=88.83 Aligned_cols=48 Identities=21% Similarity=0.627 Sum_probs=40.0
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
...||||++.+. ..+.|||||+|+..|+..|+.....+||+||..+..
T Consensus 78 ~~~C~IC~~~~~----~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVY----QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCS----SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhhc----CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 457999999752 234589999999999999998666799999999874
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.72 E-value=4.1e-09 Score=81.95 Aligned_cols=47 Identities=26% Similarity=0.716 Sum_probs=37.9
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCC--CCCCCCCCcccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD--KYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~--~~~CPiCrks~~ 200 (267)
...||||++.+ . .+ +.++|||.|+..|+..|+... ..+||+||+.+.
T Consensus 21 ~~~C~IC~~~~-~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELI-K--EP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCC-S--SC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhh-c--Ce-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 45799999974 3 23 348999999999999999742 368999999886
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.59 E-value=1.1e-08 Score=73.47 Aligned_cols=52 Identities=23% Similarity=0.510 Sum_probs=40.8
Q ss_pred cCCCCCCCchhhhhhcccCCccEEe--ccCCc-cChhhHHHHhcCCCCCCCCCCccccch
Q 024483 146 ENSMHHHCPICYEYLFDSLRNTTVM--KCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (267)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~L--pCGH~-~H~~C~~~~~~~~~~~CPiCrks~~dm 202 (267)
....+..|+||++.. .++.++ ||||. |-..|+..|.. .+.+||+||+.+.+.
T Consensus 4 ~~~~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 4 PLNAIEPCVICQGRP----KNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQMI 58 (64)
T ss_dssp -CGGGSCCTTTSSSC----SCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCEE
T ss_pred CCCCcCCCCcCCCCC----CCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhce
Confidence 345567899999973 234555 99999 78999999997 467999999998753
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.54 E-value=1.6e-08 Score=72.46 Aligned_cols=50 Identities=24% Similarity=0.616 Sum_probs=39.6
Q ss_pred CCCCCCchhhhhhcccCCccEEe--ccCCc-cChhhHHHHhcCCCCCCCCCCccccch
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVM--KCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~L--pCGH~-~H~~C~~~~~~~~~~~CPiCrks~~dm 202 (267)
.....|+||++.. .+..++ ||||. |...|+..|.+. +.+||+||+.+.+.
T Consensus 5 ~~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 5 NLLKPCSLCEKRP----RDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQLV 57 (63)
T ss_dssp GGGSBCTTTSSSB----SCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCEE
T ss_pred CcCCCCcccCCcC----CCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhce
Confidence 3456899999973 223344 99998 999999999874 57999999998754
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=1.1e-08 Score=71.42 Aligned_cols=46 Identities=22% Similarity=0.484 Sum_probs=36.6
Q ss_pred CCCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
......||||++.+ . ..+.|||||+|+..|+..| ..+||+||+.+.
T Consensus 3 e~~~~~C~IC~~~~-~---~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEA-K---CPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSC-B---CCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred cccCCCceEeCCcc-C---CeEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 34466799999974 3 2367899999999999773 579999999875
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.51 E-value=1.8e-08 Score=74.01 Aligned_cols=44 Identities=23% Similarity=0.557 Sum_probs=37.0
Q ss_pred CCCCchhhhhhcccCCccEEeccCCc-cChhhHHHHhcCCCCCCCCCCccccch
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~CPiCrks~~dm 202 (267)
+..|+||++.+ ..++.|||||. |...|+..| .+||+||+.+...
T Consensus 24 ~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRN----IAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSB----CCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCC----CCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccCc
Confidence 45799999974 34677899999 999999888 6999999998753
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.49 E-value=1.4e-08 Score=83.84 Aligned_cols=47 Identities=19% Similarity=0.446 Sum_probs=38.6
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~ 199 (267)
.+..||||++.|.+ + +.++|||.|++.|+.+|+..+..+||+||+.+
T Consensus 30 ~~~~C~IC~~~~~~---p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRR---P-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcC---c-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34579999997532 3 45899999999999999986567999999965
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.46 E-value=3e-08 Score=78.50 Aligned_cols=45 Identities=22% Similarity=0.556 Sum_probs=37.2
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
+..||||++.+ . +++...+|||+|+..|+..|+. .+||+||+.+.
T Consensus 22 ~~~C~IC~~~~-~--~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNIL-R--EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCC-S--SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHh-h--CccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 56899999974 3 3444449999999999999986 78999999985
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.43 E-value=4.2e-08 Score=82.15 Aligned_cols=63 Identities=22% Similarity=0.395 Sum_probs=45.5
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchhHH-hHHhHHHHHhc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRT-WKRIDEEIEAT 216 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~dm~~~-~~~lD~~i~~~ 216 (267)
...||||++.|. ++ +.++|||+|.+.|+.+|+..+..+||+||+.+.....+ -..+..+|.+.
T Consensus 18 ~~~C~IC~~~~~---~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 18 KYECPICLMALR---EA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp GGBCTTTCSBCS---SE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCChhhc---Cc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 457999999753 24 45899999999999999975456999999998743211 12345555543
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.38 E-value=1.2e-07 Score=90.44 Aligned_cols=49 Identities=24% Similarity=0.608 Sum_probs=41.2
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
....||||++.+ ..++.+||||.||..|+.+|+.....+||+||+.+..
T Consensus 331 ~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 346899999974 3467899999999999999997446799999999874
No 57
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=1.9e-07 Score=69.76 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=37.4
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCC-CCCCCCCCcccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-KYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~-~~~CPiCrks~~ 200 (267)
..+|+||.+.+. . ...-..|+|.||..||..||+.. ..+||+|+....
T Consensus 15 i~~C~IC~~~i~-~--g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLI-Q--GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCS-S--SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcc-c--CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 468999999753 2 23334899999999999999743 278999997754
No 58
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.32 E-value=1.7e-07 Score=70.76 Aligned_cols=47 Identities=9% Similarity=0.110 Sum_probs=39.7
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
.+..||||++.| . ..++++|||+|-+.||.+|+. ++.+||+|+..+.
T Consensus 13 ~~~~CpI~~~~m-~---dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLM-T---DPVRLPSGTVMDRSIILRHLL-NSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBC-S---SEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred hheECcccCchh-c---CCeECCCCCEECHHHHHHHHh-cCCCCCCCcCCCC
Confidence 356799999975 2 345688999999999999998 4789999999886
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.2e-07 Score=69.54 Aligned_cols=44 Identities=23% Similarity=0.557 Sum_probs=35.3
Q ss_pred CCCCchhhhhhcccCCccEEeccCCc-cChhhHHHHhcCCCCCCCCCCccccch
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~CPiCrks~~dm 202 (267)
...||||++.+ ..++.|||||. |...|+..+ .+||+||+.+...
T Consensus 25 ~~~C~IC~~~~----~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRN----IAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSC----CCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCC----CCEEEecCCCHHHHHHHhhCC-----CCCccCCceecCc
Confidence 34799999974 34567899999 999999643 6899999998753
No 60
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.30 E-value=2.5e-07 Score=72.14 Aligned_cols=47 Identities=9% Similarity=0.126 Sum_probs=39.7
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
.+..||||++.| . +.++++|||+|-+.||..|+. ++.+||+|+..+.
T Consensus 28 ~~~~CpI~~~~m-~---dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTLM-T---DPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSBC-S---SEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred HhhCCcCccCcc-c---CCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 356799999975 2 345678999999999999998 5789999999886
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=2.1e-07 Score=67.69 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=39.3
Q ss_pred CCCCCCCchhhhhhcccCCccEEeccCCc-cChhhHHHHhcCCCCCCCCCCccccchhH
Q 024483 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDMSR 204 (267)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~CPiCrks~~dm~~ 204 (267)
......|+||++.. ..+++|||||. |...|+.. ..+||+||+.|...-.
T Consensus 12 ~~~~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 12 EENSKDCVVCQNGT----VNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCCSSCCSSSSSSC----CCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCCcCcCC----CCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhceEE
Confidence 34567899999963 46788999999 99999984 3689999999976433
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.28 E-value=4.4e-07 Score=79.94 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=41.3
Q ss_pred cCCCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
+......||||++.| . +.+++||||+|.+.||..|+..+..+||+|+.++.
T Consensus 204 ~~~~~~~c~i~~~~~-~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELM-R---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBC-S---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHh-c---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 345567899999975 3 34568999999999999999855566999999986
No 63
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.25 E-value=4.2e-07 Score=70.63 Aligned_cols=47 Identities=11% Similarity=0.076 Sum_probs=39.5
Q ss_pred CCCCCchhhhhhcccCCccEEeccC-CccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCG-HTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCG-H~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
.+..||||++.| . +.++++|| |+|-+.||.+|+.. +.+||+|++.+.
T Consensus 21 ~~~~CpI~~~~m-~---dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 21 DEFLDPIMSTLM-C---DPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTTBCTTTCSBC-S---SEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred HhcCCcCccccc-c---CCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 356799999975 3 34568999 99999999999984 789999999886
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=6.4e-07 Score=68.63 Aligned_cols=47 Identities=32% Similarity=0.605 Sum_probs=36.3
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCC-----CCCCCC--CCcc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-----KYCCPI--CSKS 198 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~-----~~~CPi--Crks 198 (267)
.+..||||++.| . +||+...|||+|-+.||.+|+... ..+||+ |++.
T Consensus 6 ~~~~CPI~~~~~-~--dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEM-K--KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBC-S--SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchh-c--CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 356799999964 3 355433599999999999999742 479999 9866
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.20 E-value=5.8e-07 Score=64.16 Aligned_cols=51 Identities=25% Similarity=0.466 Sum_probs=39.0
Q ss_pred cCCCCCCCchhhhhhcccCCccEEeccC--C---ccChhhHHHHhcC-CCCCCCCCCcccc
Q 024483 146 ENSMHHHCPICYEYLFDSLRNTTVMKCG--H---TMHCECYHEMIKR-DKYCCPICSKSVI 200 (267)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCG--H---~~H~~C~~~~~~~-~~~~CPiCrks~~ 200 (267)
|......|.||++.. ..+. ++||. + .||..|+.+|+.. ++.+||+|+..+.
T Consensus 2 e~~~~~~CrIC~~~~---~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL---GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEEC---SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecCC---CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456677899999972 2333 68964 4 9999999999974 3689999997753
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.19 E-value=4.9e-07 Score=68.80 Aligned_cols=49 Identities=20% Similarity=0.518 Sum_probs=37.0
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcC-------CCCCCCC--CCcc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-------DKYCCPI--CSKS 198 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~-------~~~~CPi--Crks 198 (267)
....||||+++ +.....+..++|||.|.+.|+.+|+.. ...+||. |+..
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35679999998 443222333489999999999999862 1368999 9998
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.12 E-value=4.3e-07 Score=67.80 Aligned_cols=47 Identities=30% Similarity=0.647 Sum_probs=38.0
Q ss_pred CCCCchhhhhhcccCCccEEeccCCc-cChhhHHHHhcCCCCCCCCCCccccchhHH
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDMSRT 205 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~CPiCrks~~dm~~~ 205 (267)
+..|+||++.+ ..++.|||||. |-..|+..| .+||+||+.+...-..
T Consensus 18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i 65 (79)
T 2yho_A 18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHVQHV 65 (79)
T ss_dssp HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEEEEC
T ss_pred CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCeEEE
Confidence 35799999974 35778999999 999999866 3999999999865433
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.96 E-value=1.3e-06 Score=82.53 Aligned_cols=53 Identities=26% Similarity=0.503 Sum_probs=39.5
Q ss_pred CCCCCCchhhhhhcccC-CccE---EeccCCccChhhHHHHhcCC----------CCCCCCCCcccc
Q 024483 148 SMHHHCPICYEYLFDSL-RNTT---VMKCGHTMHCECYHEMIKRD----------KYCCPICSKSVI 200 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~-~~v~---~LpCGH~~H~~C~~~~~~~~----------~~~CPiCrks~~ 200 (267)
....+|+||++.+.++. .+.+ .++|||.||..|+.+|++.. ..+||.|++.|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45678999999865522 2222 35899999999999999731 157999999875
No 69
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.93 E-value=6.2e-06 Score=71.05 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=38.7
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
....||||++.| . +.+++||||+|-+.||..|+..+..+||+|+..+.
T Consensus 105 ~~f~CPI~~elm-~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFELM-R---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSBC-S---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HhhcccCccccC-C---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 356799999975 3 34456999999999999999753447999999885
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.70 E-value=1e-05 Score=73.72 Aligned_cols=50 Identities=22% Similarity=0.480 Sum_probs=41.4
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcC-CCCCCCC--CCcccc
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-DKYCCPI--CSKSVI 200 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~-~~~~CPi--Crks~~ 200 (267)
..+..||||++.| . +||+.+.|||+|-+.||.+|+.. +..+||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f-~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPY-E--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBC-S--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcc-c--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3456799999975 3 58887899999999999999974 3478999 999875
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.67 E-value=6.2e-06 Score=77.44 Aligned_cols=44 Identities=25% Similarity=0.664 Sum_probs=36.8
Q ss_pred CCCCchhhhhhcccCCccEEeccCCc-cChhhHHHHhcCCCCCCCCCCccccch
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~CPiCrks~~dm 202 (267)
+..||||++.+ ..++.|||||. |...|+..| .+||+||..+...
T Consensus 295 ~~~C~IC~~~~----~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 295 ERTCKVCMDKE----VSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGT 339 (345)
T ss_dssp TCBCTTTSSSB----CCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCEE
T ss_pred CCCCCccCCcC----CceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccCe
Confidence 46799999974 34677899999 999999877 5899999998643
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.22 E-value=0.0001 Score=52.46 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=37.9
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
+...|||+++.|- ++|...++||+|=+.++.+|+.. +.+||+.++.+.
T Consensus 2 ~~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~ 49 (61)
T 2bay_A 2 SHMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLS 49 (61)
T ss_dssp --CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCC
T ss_pred CeEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCC
Confidence 3467999999753 35444499999999999999984 568999998885
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.05 E-value=0.00024 Score=55.95 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=41.1
Q ss_pred CCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccchhH
Q 024483 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 204 (267)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~dm~~ 204 (267)
.|++|.-++. .-.+.+||+|+|.-.|+..|.+.+..+||+|+..|.+.+.
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 4788877642 3567889999999999999987677899999999987653
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.98 E-value=0.013 Score=52.15 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=34.6
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCC-CCCCCCCCccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-KYCCPICSKSV 199 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~-~~~CPiCrks~ 199 (267)
-..|.||.+-+.- .++--.|+|.||..|+..|++.. +.+||.|+...
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 5578888886532 22223499999999999999743 46999999753
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.45 E-value=0.11 Score=40.48 Aligned_cols=44 Identities=20% Similarity=0.577 Sum_probs=36.1
Q ss_pred CCCCchhhhhhcccCCccEEeccC-CccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCG-HTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCG-H~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
..+|-.|.-. + ...+.|. |.+...|+..+|. .+.+||||.+.+-
T Consensus 28 ~~nCKsCWf~-~-----k~LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFE-N-----KGLVECNNHYLCLNCLTLLLS-VSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSC-C-----SSEEECSSCEEEHHHHHHTCS-SSSEETTTTEECC
T ss_pred cccChhhccc-c-----CCeeeecchhhHHHHHHHHHh-hccCCcccCCcCC
Confidence 4688889853 2 2367895 9999999999998 5789999999996
No 76
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=90.04 E-value=0.088 Score=39.75 Aligned_cols=28 Identities=29% Similarity=0.701 Sum_probs=16.5
Q ss_pred eeCCCCccccccccCCcCCCccceeeccccccc
Q 024483 67 ICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFY 99 (267)
Q Consensus 67 ~C~~C~~~q~v~~~C~~Cg~~f~~y~C~~C~l~ 99 (267)
+|..|+.++.+ |..||+. .|||.-|+=.
T Consensus 33 fCPeCgq~Le~---lkACGA~--~yFC~~C~~L 60 (81)
T 2jrp_A 33 LCPDCRQPLQV---LKACGAV--DYFCQNGHGL 60 (81)
T ss_dssp ECSSSCSCCCE---EEETTEE--EECCTTTTCC
T ss_pred cCcchhhHHHH---HHhcCCc--CeeeccCCCE
Confidence 55555544333 5555554 7888888643
No 77
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=89.84 E-value=0.18 Score=41.12 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=30.8
Q ss_pred CeeEEEcCCCCCcccc-------------ceeEe------eecCCCCCCccccccCCC
Q 024483 225 KKVWILCNDCNDTTEV-------------YFHII------GQKCSHCKSYNTRSIAPP 263 (267)
Q Consensus 225 ~~v~I~CnDC~~~s~~-------------~fH~l------g~kC~~C~SyNT~~~~~~ 263 (267)
..+...|++||..... .+|++ ..+|+.|||.+...++|.
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G~ 124 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKGR 124 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEESS
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecCC
Confidence 3557899999987532 56777 689999999999887764
No 78
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=87.43 E-value=0.25 Score=37.09 Aligned_cols=75 Identities=13% Similarity=0.234 Sum_probs=42.5
Q ss_pred CCCCchhhhhhcccCCccEE-eccCCccChhhHHH-HhcCCCCCCCCCCccccchhHHhHHhHHHHHhcCCChhhhcCee
Q 024483 150 HHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHE-MIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKV 227 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~-~~~~~~~~CPiCrks~~dm~~~~~~lD~~i~~~pmP~~y~~~~v 227 (267)
+..|+||++..+. .++.. |.|||+|-..|+.. |......+ +..+.+... .+ -...++-+...+...
T Consensus 3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~h~~~~~~~----~h~l~~~~~---~~---~~~~~~C~~H~~e~l 70 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKATHPNKKPFT----GHRLIEPIP---DS---HIRGLMCLEHEDEKV 70 (101)
T ss_dssp CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHHSCSCSSST----TCCBSSCCC---SC---CSSCCCCSSCSSSCC
T ss_pred CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHHhccCCccC----CCeeecccc---cc---CccCCcCcCcCCCcc
Confidence 4679999986443 34444 99999999999998 53211111 222221100 00 002345555555556
Q ss_pred EEEcCCCCC
Q 024483 228 WILCNDCND 236 (267)
Q Consensus 228 ~I~CnDC~~ 236 (267)
.++|.+|+.
T Consensus 71 ~~fC~~~~~ 79 (101)
T 2jun_A 71 NMYCVTDDQ 79 (101)
T ss_dssp CEEETTTTE
T ss_pred eEECCCCCC
Confidence 788888874
No 79
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=83.84 E-value=0.28 Score=38.68 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=29.5
Q ss_pred cCeeEEEcCCCCCccccceeEeee-cCCCCCCccccccCCC
Q 024483 224 HKKVWILCNDCNDTTEVYFHIIGQ-KCSHCKSYNTRSIAPP 263 (267)
Q Consensus 224 ~~~v~I~CnDC~~~s~~~fH~lg~-kC~~C~SyNT~~~~~~ 263 (267)
...+...|.+||......- ... +||.|+|.+++.++|.
T Consensus 69 ~~p~~~~C~~CG~~~e~~~--~~~~~CP~Cgs~~~~i~~G~ 107 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKPNA--LDYGVCEKCHSKNVIITQGN 107 (119)
T ss_dssp EECCEEECSSSSCEECSCC--STTCCCSSSSSCCCEEEESS
T ss_pred eccceEEcCCCCCEEeCCC--CCCCcCccccCCCcEEecCC
Confidence 3456799999998876542 246 8999999999998764
No 80
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.28 E-value=0.27 Score=38.41 Aligned_cols=75 Identities=25% Similarity=0.554 Sum_probs=42.4
Q ss_pred cCccceeecCccCcccccc-c-----------cCcceeecCCCCCCCchhhhhhcccCCccEE-eccCCccChhhHHHHh
Q 024483 119 GGRENYFHCKRCGSCYSTS-L-----------RNNHLCIENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMI 185 (267)
Q Consensus 119 G~~~~~fHC~~C~~C~s~~-l-----------~~~H~C~e~~~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~ 185 (267)
|.+++...|+.|+.-+-.+ | .++=.|.+= ..|.||.+.-.+. ..+.. -.|...||..|++.-|
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~~-~~ll~Cd~C~~~yH~~Cl~p~l 96 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKNA-DNMLFCDSCDRGFHMECCDPPL 96 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCTT-CCCEECTTTCCEECGGGCSSCC
T ss_pred CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCCc-cceEEcCCCCCeeecccCCCCC
Confidence 3456788888887654322 0 122223321 1577887631111 11211 2688999999997655
Q ss_pred c---CCCCCCCCCCc
Q 024483 186 K---RDKYCCPICSK 197 (267)
Q Consensus 186 ~---~~~~~CPiCrk 197 (267)
. .+...||.|+.
T Consensus 97 ~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 97 TRMPKGMWICQICRP 111 (112)
T ss_dssp SSCCSSCCCCTTTSC
T ss_pred CCCCCCCeECCCCCC
Confidence 4 24678999975
No 81
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=82.14 E-value=0.94 Score=37.33 Aligned_cols=49 Identities=18% Similarity=0.432 Sum_probs=35.1
Q ss_pred ecCCCCCCCchhhhhhcccCCccEE-eccCCccChhhHHHHh----------cCCCCCCCCCCcc
Q 024483 145 IENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMI----------KRDKYCCPICSKS 198 (267)
Q Consensus 145 ~e~~~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~----------~~~~~~CPiCrks 198 (267)
.+...+..|.||.+. .+ +.. =.|--+||..|+..-+ ......||+|...
T Consensus 58 d~Dg~~d~C~vC~~G----G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG----GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CTTSCBCSCSSSCCC----SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred cCCCCCCeecccCCC----Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 356677889999974 12 222 2678999999999654 2357899999954
No 82
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.62 E-value=0.24 Score=38.35 Aligned_cols=80 Identities=23% Similarity=0.669 Sum_probs=43.3
Q ss_pred CCCcccccCc-cceeecCccCc-----ccccccc----CcceeecCCCCCCCchhhhhhcccCCccEEe---ccCCccCh
Q 024483 112 DCGICRIGGR-ENYFHCKRCGS-----CYSTSLR----NNHLCIENSMHHHCPICYEYLFDSLRNTTVM---KCGHTMHC 178 (267)
Q Consensus 112 ~CgiCR~G~~-~~~fHC~~C~~-----C~s~~l~----~~H~C~e~~~~~~CpICle~lf~s~~~v~~L---pCGH~~H~ 178 (267)
.|.||..+|. ++...|+.|+. |+.+.+. +.=.|.+= ..|.||...- .+..+| .|.-.||.
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~~----~~~~ll~Cd~C~~~yH~ 81 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQSG----EDSKMLVCDTCDKGYHT 81 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCCS----CCTTEEECSSSCCEEEG
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCccC----CCCCeeECCCCCcHHhH
Confidence 4566666553 55677777764 3433321 11112110 1466776641 122233 67899999
Q ss_pred hhHHHHhc---CCCCCCCCCCcc
Q 024483 179 ECYHEMIK---RDKYCCPICSKS 198 (267)
Q Consensus 179 ~C~~~~~~---~~~~~CPiCrks 198 (267)
.|++.-+. .....||.|...
T Consensus 82 ~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 82 FCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp GGSSSCCSSCCSSCCCCHHHHCC
T ss_pred HhcCCccccCCCCCcCCcCCcCc
Confidence 99986443 235678777543
No 83
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=75.39 E-value=0.18 Score=39.66 Aligned_cols=85 Identities=22% Similarity=0.577 Sum_probs=47.9
Q ss_pred CCCCcccccC--------ccceeecCccCc-----cccccc-------cCcceeecCCCCCCCchhhhhhcccCCccEE-
Q 024483 111 DDCGICRIGG--------RENYFHCKRCGS-----CYSTSL-------RNNHLCIENSMHHHCPICYEYLFDSLRNTTV- 169 (267)
Q Consensus 111 ~~CgiCR~G~--------~~~~fHC~~C~~-----C~s~~l-------~~~H~C~e~~~~~~CpICle~lf~s~~~v~~- 169 (267)
+.|+||..|+ +++...|+.|+. |+...+ .+.=.|.+= ..|.||...- +. ..+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~~-~~-~~ll~C 76 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTSE-ND-DQLLFC 76 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCCT-TT-TTEEEC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCcccccC-CC-CceEEc
Confidence 3466665443 467888988875 444321 122233321 1577887642 11 12211
Q ss_pred eccCCccChhhHHHHhc---CCCCCCCCCCcccc
Q 024483 170 MKCGHTMHCECYHEMIK---RDKYCCPICSKSVI 200 (267)
Q Consensus 170 LpCGH~~H~~C~~~~~~---~~~~~CPiCrks~~ 200 (267)
-.|.-.||..|+..=|. .+...||.|...+.
T Consensus 77 d~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 77 DDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp SSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 26789999999985433 24567888865544
No 84
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=75.21 E-value=1.7 Score=33.82 Aligned_cols=9 Identities=33% Similarity=0.852 Sum_probs=4.6
Q ss_pred ceeeccccc
Q 024483 89 GEYFCDICK 97 (267)
Q Consensus 89 ~~y~C~~C~ 97 (267)
+.|||..|+
T Consensus 80 vdYFC~~ch 88 (101)
T 2jne_A 80 VDYFCQHGH 88 (101)
T ss_dssp EEEEETTTT
T ss_pred cchhhccCC
Confidence 445555554
No 85
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=72.06 E-value=0.92 Score=35.14 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=26.4
Q ss_pred CCCchhhhhhcccCCccE-EeccCCccChhhHHHHhc-------CCCCCCCCCCc
Q 024483 151 HHCPICYEYLFDSLRNTT-VMKCGHTMHCECYHEMIK-------RDKYCCPICSK 197 (267)
Q Consensus 151 ~~CpICle~lf~s~~~v~-~LpCGH~~H~~C~~~~~~-------~~~~~CPiCrk 197 (267)
..|+.|.+. .+....++ ---|...+|..|+....+ ...+.||.|+.
T Consensus 60 ~~c~~c~~~-~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 60 GEVDQNEET-QDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CCBCCHHHH-CCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred Ccccccccc-cccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 346666544 22212222 236899999999864322 12488999974
No 86
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=69.14 E-value=4.6 Score=30.92 Aligned_cols=69 Identities=25% Similarity=0.701 Sum_probs=34.4
Q ss_pred ceeeeCCCCcccccc--ccCCcCCCccceeecccccccc-CCCCcCeeecCCCC---cccccC-ccceeecCccCccccc
Q 024483 64 KQVICSVCDTEQPVA--QVCTNCGVNMGEYFCDICKFYD-DDIEKGQFHCDDCG---ICRIGG-RENYFHCKRCGSCYST 136 (267)
Q Consensus 64 ~~v~C~~C~~~q~v~--~~C~~Cg~~f~~y~C~~C~l~d-d~~~k~~yHC~~Cg---iCR~G~-~~~~fHC~~C~~C~s~ 136 (267)
...+|..|+...... ..|..|+..|=. .|--.. ....+..+.|+.|. +|+.++ .+....|+.|+.-+-+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~----~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~ 81 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHG----MCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHT 81 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECT----TTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEG
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcCh----HHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhH
Confidence 445666665543321 355555544311 121111 11123556666655 444444 2458899998865544
No 87
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=62.25 E-value=7.4 Score=29.82 Aligned_cols=56 Identities=20% Similarity=0.434 Sum_probs=41.6
Q ss_pred ecCCCCCCCchhhhhhcccCCccEE---eccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 145 IENSMHHHCPICYEYLFDSLRNTTV---MKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 145 ~e~~~~~~CpICle~lf~s~~~v~~---LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
+..+..+.|-||.+++=...+.-.+ .-|+=.+.+.||+--.+..+..||-|+...-
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3445568999999995333222222 3689999999999988888899999986654
No 88
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=56.27 E-value=7.5 Score=27.57 Aligned_cols=45 Identities=18% Similarity=0.380 Sum_probs=31.2
Q ss_pred CCCCCchhhhhhcccCCccEE-eccCCccChhhHHHHhcC---CCCCCCCCCcc
Q 024483 149 MHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIKR---DKYCCPICSKS 198 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~~~---~~~~CPiCrks 198 (267)
....|.||.+. .+ +.. -.|...||..|++..|.. +...||.|+..
T Consensus 11 ~~~~C~vC~~~----~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG----TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC----TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC----Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34569999753 22 222 268899999999877653 46889999743
No 89
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=52.55 E-value=3.2 Score=25.08 Aligned_cols=29 Identities=14% Similarity=0.473 Sum_probs=16.0
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhH
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECY 181 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~ 181 (267)
...||.|...++.. +.+. .=|..+|+.||
T Consensus 3 ~~~C~~C~k~Vy~~-Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPT-EKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGG-GCCC--SSSSCCCGGGC
T ss_pred CCcCCccCCEEecc-eeEE--ECCeEecccCC
Confidence 44677777665443 2222 23677777764
No 90
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=52.30 E-value=4.7 Score=33.24 Aligned_cols=31 Identities=26% Similarity=0.734 Sum_probs=21.3
Q ss_pred ceeeccccccccCCCCcCeeecCCCCccccc
Q 024483 89 GEYFCDICKFYDDDIEKGQFHCDDCGICRIG 119 (267)
Q Consensus 89 ~~y~C~~C~l~dd~~~k~~yHC~~CgiCR~G 119 (267)
.-|-|+.|.+=--...++-|||+.||+|---
T Consensus 97 ~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~ 127 (143)
T 2dkt_A 97 RQYHCESCGICRIGPKEDFFHCLKCNLCLTT 127 (143)
T ss_dssp SEEEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred ceecCCCCCceeccCCcCcEECCcCCeeecc
Confidence 3455555555433456899999999999543
No 91
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.36 E-value=1.2 Score=30.90 Aligned_cols=49 Identities=22% Similarity=0.385 Sum_probs=30.9
Q ss_pred CCCCCchhhhhhcccCCccEE-eccCCccChhhHHHHhc----CCCCCCCCCCcc
Q 024483 149 MHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK----RDKYCCPICSKS 198 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~~----~~~~~CPiCrks 198 (267)
....||||.....+. ...+. -.|.-.||..|+.--.. ...|.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~-~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAAD-EFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSS-SCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCC-CCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345699998763222 22222 37889999999864321 146888888653
No 92
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=49.91 E-value=8.2 Score=24.27 Aligned_cols=15 Identities=33% Similarity=0.738 Sum_probs=12.1
Q ss_pred CCCCCCCCccccchh
Q 024483 189 KYCCPICSKSVIDMS 203 (267)
Q Consensus 189 ~~~CPiCrks~~dm~ 203 (267)
.+.||+|.+.+.+-.
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 488999999998543
No 93
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=49.77 E-value=11 Score=25.83 Aligned_cols=20 Identities=30% Similarity=0.896 Sum_probs=11.2
Q ss_pred cccCCcCCCc------cceeeccccc
Q 024483 78 AQVCTNCGVN------MGEYFCDICK 97 (267)
Q Consensus 78 ~~~C~~Cg~~------f~~y~C~~C~ 97 (267)
...||.||.. |++++|.+|.
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCg 43 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCG 43 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTC
T ss_pred cccCcCCCCceeEeccCCEEECCCCC
Confidence 4567777763 2455555553
No 94
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.77 E-value=6.9 Score=27.24 Aligned_cols=45 Identities=16% Similarity=0.353 Sum_probs=30.1
Q ss_pred CCCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccch
Q 024483 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (267)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~dm 202 (267)
+.....|+.|.+.+......+.. =|..+|..|| +|-.|++++.+-
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~~ 52 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNS--NGELYHEQCF---------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC---------CCTTTCCCCGGG
T ss_pred CCCCCCchhcCCccCCCceEEEe--CccEeccccC---------eECCCCCCCCCC
Confidence 34467799999987643222223 3778887664 688899888753
No 95
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=49.68 E-value=8 Score=28.96 Aligned_cols=26 Identities=15% Similarity=0.595 Sum_probs=13.2
Q ss_pred eeeeCCCCccccccccCCcCCCccce
Q 024483 65 QVICSVCDTEQPVAQVCTNCGVNMGE 90 (267)
Q Consensus 65 ~v~C~~C~~~q~v~~~C~~Cg~~f~~ 90 (267)
...|..|+..-+....||.||.++..
T Consensus 18 ~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 18 TAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp EEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred ceECccccccCCCcccCcchhhHHHH
Confidence 33455555544444455555555544
No 96
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=49.37 E-value=5.2 Score=27.97 Aligned_cols=43 Identities=19% Similarity=0.430 Sum_probs=28.7
Q ss_pred CCCCCCchhhhhhcc---cCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 148 SMHHHCPICYEYLFD---SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 148 ~~~~~CpICle~lf~---s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
.....|+.|.+.+.. ..+.+.. =|..+|..| ++|-.|+++|.+
T Consensus 13 ~~~~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~C---------F~C~~C~~~L~~ 58 (77)
T 2egq_A 13 FVAKKCAGCKNPITGFGKGSSVVAY--EGQSWHDYC---------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCCCSSSCCCCCCCSSCCCEEEE--TTEEEETTT---------CBCSSSCCBCTT
T ss_pred hhCccCcccCCcccCCCCCceeEEE--CcceeCccc---------CEehhcCCCCCC
Confidence 344679999988764 2233333 377888766 478889998863
No 97
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=47.73 E-value=16 Score=22.81 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=11.0
Q ss_pred CCCCCCCCccccchhH
Q 024483 189 KYCCPICSKSVIDMSR 204 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~ 204 (267)
.|.|++|.+++...+.
T Consensus 4 ~~~C~~C~~~f~~~~~ 19 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYY 19 (57)
T ss_dssp -CBCTTTCCBCSCHHH
T ss_pred CccCCCCcchhCChHH
Confidence 5788888888875544
No 98
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.08 E-value=7.8 Score=26.65 Aligned_cols=41 Identities=17% Similarity=0.410 Sum_probs=27.6
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
....|+.|.+.+......+. .=|..+|..| ++|-.|++.|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C---------F~C~~C~~~L~ 44 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVV--ALDRVFHVGC---------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEE--CSSSEECTTT---------CBCSSSCCBCT
T ss_pred CCCCCccCCCccCCCceEEE--ECCCeEcccC---------CcccccCCcCC
Confidence 34678999988764322232 3378888776 47888998885
No 99
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=44.89 E-value=5.5 Score=33.86 Aligned_cols=51 Identities=22% Similarity=0.492 Sum_probs=32.6
Q ss_pred CCCchhhhhhcccCCc--cEE-eccCCccChhhHHH------Hhc----CCCCCCCCCCccccc
Q 024483 151 HHCPICYEYLFDSLRN--TTV-MKCGHTMHCECYHE------MIK----RDKYCCPICSKSVID 201 (267)
Q Consensus 151 ~~CpICle~lf~s~~~--v~~-LpCGH~~H~~C~~~------~~~----~~~~~CPiCrks~~d 201 (267)
..||||....-++... .+. -.|...||..|..- .+. ...|.||.|+..-..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 4699998764333211 232 25789999999842 111 026999999987653
No 100
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=44.61 E-value=8.7 Score=25.24 Aligned_cols=45 Identities=18% Similarity=0.594 Sum_probs=27.8
Q ss_pred CCchhhhhhcccCCccEE-eccCCccChhhHHHHhc---CCCCCCCCCCcc
Q 024483 152 HCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK---RDKYCCPICSKS 198 (267)
Q Consensus 152 ~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~~---~~~~~CPiCrks 198 (267)
.|.||... -+. ..+.. -.|.-.||..|++.=+. .+...||.|..+
T Consensus 2 ~C~vC~~~-~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK-GED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS-SCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC-CCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47777753 111 12222 26889999999975333 246789999764
No 101
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.93 E-value=9.6 Score=25.71 Aligned_cols=11 Identities=27% Similarity=0.854 Sum_probs=7.2
Q ss_pred ccccCCcCCCc
Q 024483 77 VAQVCTNCGVN 87 (267)
Q Consensus 77 v~~~C~~Cg~~ 87 (267)
....||.||+.
T Consensus 18 ~~k~CP~CG~~ 28 (50)
T 3j20_Y 18 KNKFCPRCGPG 28 (50)
T ss_dssp SSEECSSSCSS
T ss_pred ecccCCCCCCc
Confidence 34578888773
No 102
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=43.80 E-value=4 Score=29.16 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=31.5
Q ss_pred CCCchhhhhhcccCCccEE-eccCCccChhhHHHHhcC---CCCCCCCCCcccc
Q 024483 151 HHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIKR---DKYCCPICSKSVI 200 (267)
Q Consensus 151 ~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~~~---~~~~CPiCrks~~ 200 (267)
..|+||...- + ....+. =.|.-.||..|+..-+.. ..+.||.|...+.
T Consensus 19 ~~C~~C~~~~-~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 19 WICPGCNKPD-D-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp ECBTTTTBCC-S-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred cCCCCCCCCC-C-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4599998752 2 112222 268899999999754432 4688999986553
No 103
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.64 E-value=6.7 Score=27.71 Aligned_cols=42 Identities=19% Similarity=0.514 Sum_probs=27.4
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
....|+.|.+.+......+. .=|..+|..|| +|-.|++.|.+
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVE--YKGTVWHKDCF---------TCSNCKQVIGT 55 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEE--CSSCEEETTTC---------CCSSSCCCCTT
T ss_pred cCCcCccCCcccccCceEEE--ECccccccccC---------chhhCCCccCC
Confidence 34678999988754322222 23778887654 67888888864
No 104
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=42.88 E-value=21 Score=27.05 Aligned_cols=32 Identities=19% Similarity=0.570 Sum_probs=23.9
Q ss_pred CCCCCCchhhhhhcccCCccEEec---cCCccChhhHHHH
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMK---CGHTMHCECYHEM 184 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~Lp---CGH~~H~~C~~~~ 184 (267)
..+..|+||-- |++. ..+| ||=.||..||.+.
T Consensus 13 ~~D~~C~VC~~--~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV--WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC--CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc--cccc---ceeccccccccccHhhcccc
Confidence 45778999974 4432 2455 5999999999997
No 105
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=42.10 E-value=13 Score=23.26 Aligned_cols=15 Identities=27% Similarity=0.475 Sum_probs=9.3
Q ss_pred CCCCCCCccccchhH
Q 024483 190 YCCPICSKSVIDMSR 204 (267)
Q Consensus 190 ~~CPiCrks~~dm~~ 204 (267)
|.|++|.+++...+.
T Consensus 2 ~~C~~C~~~f~~~~~ 16 (57)
T 1bbo_A 2 YICEECGIRXKKPSM 16 (57)
T ss_dssp CBCTTTCCBCSSHHH
T ss_pred CcCCCCcCcCCCHHH
Confidence 567777777665433
No 106
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=39.84 E-value=11 Score=26.11 Aligned_cols=48 Identities=21% Similarity=0.523 Sum_probs=31.6
Q ss_pred CCCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhc---CCCCCCCCCCcc
Q 024483 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICSKS 198 (267)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~---~~~~~CPiCrks 198 (267)
...+..|.||.+. .+-+.--.|--.||..|+..-+. .+...||.|.+.
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456679999863 11111126778999999987442 356889999753
No 107
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=39.04 E-value=25 Score=26.94 Aligned_cols=27 Identities=26% Similarity=0.625 Sum_probs=19.7
Q ss_pred eccCCccChhhHHH------HhcCCCCCCCCCC
Q 024483 170 MKCGHTMHCECYHE------MIKRDKYCCPICS 196 (267)
Q Consensus 170 LpCGH~~H~~C~~~------~~~~~~~~CPiCr 196 (267)
-.|+..||..|+.. .+......||-|+
T Consensus 30 ~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 30 ADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp TTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred hhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 36899999999952 2334567788886
No 108
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=38.97 E-value=12 Score=26.30 Aligned_cols=24 Identities=25% Similarity=0.638 Sum_probs=16.8
Q ss_pred ceeeeCCCCc--cccccccCCcCCCc
Q 024483 64 KQVICSVCDT--EQPVAQVCTNCGVN 87 (267)
Q Consensus 64 ~~v~C~~C~~--~q~v~~~C~~Cg~~ 87 (267)
++.+|.+|.. .++....||.|++.
T Consensus 10 ~~~~C~vC~~~~~~~akY~CPrC~~r 35 (59)
T 1x4s_A 10 PAGPCGFCPAGEVQPARYTCPRCNAP 35 (59)
T ss_dssp CCEEECSSCTTCCEEECEECTTTCCE
T ss_pred CCCcCcCCCCCcCCCccccCcCCCCC
Confidence 3578888886 34566778888754
No 109
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=38.72 E-value=11 Score=28.19 Aligned_cols=34 Identities=26% Similarity=0.598 Sum_probs=23.0
Q ss_pred cccccCCcCCCccceeeccccccccCCCCcCeeecCCCCcccccC
Q 024483 76 PVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGG 120 (267)
Q Consensus 76 ~v~~~C~~Cg~~f~~y~C~~C~l~dd~~~k~~yHC~~CgiCR~G~ 120 (267)
.....|++||... +|+ +...+++|+.||-=-.||
T Consensus 25 ~~~y~Cp~CG~~~---------v~r--~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 25 NEDHACPNCGEDR---------VDR--QGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp HSCEECSSSCCEE---------EEE--EETTEEEETTTCCEEECC
T ss_pred cccCcCCCCCCcc---------eec--cCCCeEECCCCCCEecCC
Confidence 3345677777643 222 456899999999877776
No 110
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=38.57 E-value=7 Score=27.32 Aligned_cols=39 Identities=26% Similarity=0.643 Sum_probs=26.9
Q ss_pred CCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccch
Q 024483 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (267)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~dm 202 (267)
.|+.|.+.+... +.+..+ |..+|..| ++|..|+++|.+.
T Consensus 2 ~C~~C~~~I~~~-~~v~a~--~~~~H~~C---------F~C~~C~~~L~~~ 40 (76)
T 1iml_A 2 KCPKCDKEVYFA-ERVTSL--GKDWHRPC---------LKCEKCGKTLTSG 40 (76)
T ss_dssp BCTTTSSBCCGG-GEEEET--TEEEETTT---------CBCTTTCCBCCTT
T ss_pred cCCCCCCEEECc-eEEEEC--CccccCCC---------CCccccCccCCCC
Confidence 478888876543 234344 88888765 4788999988743
No 111
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.48 E-value=14 Score=25.37 Aligned_cols=40 Identities=20% Similarity=0.474 Sum_probs=27.8
Q ss_pred CCCCchhhhhhcc--cCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 150 HHHCPICYEYLFD--SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle~lf~--s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
...|+.|.+.+.. +... +..=|..+|..|| +|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--~~a~~~~wH~~CF---------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY--ISFEERQWHNDCF---------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC--EECSSCEECTTTC---------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce--EEECCcccCcccC---------EeccCCCcCC
Confidence 4679999998764 2222 2234788997764 7888999886
No 112
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=38.13 E-value=20 Score=28.83 Aligned_cols=51 Identities=20% Similarity=0.444 Sum_probs=35.2
Q ss_pred ecCCCCCCCchhhhhhcccCCccEE-eccCCccChhhHHHHh----------cCCCCCCCCCCcccc
Q 024483 145 IENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMI----------KRDKYCCPICSKSVI 200 (267)
Q Consensus 145 ~e~~~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~----------~~~~~~CPiCrks~~ 200 (267)
.|...+..|.||.+. . .+.. =.|-..||..|+...+ ......|++|+.+-+
T Consensus 52 d~Dg~~~~C~vC~dG----G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG----G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp CTTSCBSSCTTTCCC----S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCCCCCcCeecCCC----C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 456677889999974 1 1111 1578999999999642 235689999976544
No 113
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.62 E-value=7.9 Score=26.54 Aligned_cols=41 Identities=24% Similarity=0.542 Sum_probs=27.3
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
...|+.|.+.+..... .+..=|..+|..| ++|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~~--~~~a~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR--KLEYGGQTWHEHC---------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSC--EECSTTCCEETTT---------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCcc--EEEECccccCccc---------CeECCCCCcCCC
Confidence 4578889888754322 2333478888766 478889988764
No 114
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=37.26 E-value=11 Score=22.73 Aligned_cols=16 Identities=38% Similarity=1.055 Sum_probs=13.3
Q ss_pred CCCCCCCCccccchhH
Q 024483 189 KYCCPICSKSVIDMSR 204 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~ 204 (267)
.++||+|+..+-|+..
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 5789999999988654
No 115
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.81 E-value=12 Score=26.33 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=26.5
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
...|+.|.+.+.+ +.+. .=|..+|..| ++|-.|++.|.+
T Consensus 15 ~~~C~~C~~~I~~--~~~~--a~~~~~H~~C---------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMTG--PFMV--AGEFKYHPEC---------FACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCCS--CCBC--CTTCCBCTTS---------CBCTTTCCBCCT
T ss_pred CCcCccCCCCcCc--eEEE--ECCceecccc---------CCccCCCCccCC
Confidence 4568999988762 2232 2377888665 578889998864
No 116
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=36.37 E-value=23 Score=23.59 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=13.6
Q ss_pred CCCCCCCCCccccchhHHhH
Q 024483 188 DKYCCPICSKSVIDMSRTWK 207 (267)
Q Consensus 188 ~~~~CPiCrks~~dm~~~~~ 207 (267)
..+.|++|.+.+.....+.+
T Consensus 28 ~~~~C~~C~~~f~~~~~l~~ 47 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSDMKK 47 (82)
T ss_dssp CCEECSSSCCEESSHHHHHH
T ss_pred CCeeCCcCChhhCCHHHHHH
Confidence 45888888888875544333
No 117
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.25 E-value=13 Score=26.17 Aligned_cols=41 Identities=20% Similarity=0.480 Sum_probs=26.8
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
....|+.|.+.+......+.. =|..+|..| ++|-.|+++|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C---------F~C~~C~~~L~ 54 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFY--EDRHFHEGC---------FRCCRCQRSLA 54 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCC--SSCCCBTTT---------SBCTTTCCBCS
T ss_pred cCCcCccCCCccccCcEEEEe--CCccccccC---------CeecCCCCccC
Confidence 345789999887522222222 377888765 47888999886
No 118
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.78 E-value=13 Score=25.38 Aligned_cols=41 Identities=20% Similarity=0.519 Sum_probs=27.0
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
...|+.|.+.+......+. .=|..+|..|| +|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKME--YKGSSWHETCF---------ICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEE--ETTEEEETTTT---------CCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEE--ECcCeecccCC---------cccccCCccCC
Confidence 4578999988764322222 23778887654 68889888864
No 119
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=34.69 E-value=22 Score=18.27 Aligned_cols=15 Identities=33% Similarity=0.897 Sum_probs=11.6
Q ss_pred CCCCCCCccccchhH
Q 024483 190 YCCPICSKSVIDMSR 204 (267)
Q Consensus 190 ~~CPiCrks~~dm~~ 204 (267)
|.|++|.+++...+.
T Consensus 2 ~~C~~C~k~f~~~~~ 16 (27)
T 1znf_A 2 YKCGLCERSFVEKSA 16 (27)
T ss_dssp CBCSSSCCBCSSHHH
T ss_pred ccCCCCCCcCCCHHH
Confidence 689999999875443
No 120
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.52 E-value=11 Score=26.28 Aligned_cols=41 Identities=27% Similarity=0.613 Sum_probs=28.6
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
....|+.|.+.+... +.+. .=|..+|..| ++|..|+++|.+
T Consensus 8 ~~~~C~~C~~~I~~~-~~v~--a~~~~~H~~C---------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFA-EKVS--SLGKDWHKFC---------LKCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTT-TEEE--ETTEEEETTT---------CBCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECC-eEEE--ECCeEeeCCC---------CCCCCCCCccCC
Confidence 346799999987643 2333 3477888765 578899999874
No 121
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.32 E-value=15 Score=25.53 Aligned_cols=40 Identities=23% Similarity=0.505 Sum_probs=27.8
Q ss_pred CCCCchhhhhhcc--cCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 150 HHHCPICYEYLFD--SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle~lf~--s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
...|+.|.+.+.. ..+. +..=|..+|..|| +|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~--~~a~~~~wH~~CF---------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKF--ICFQDSQWHSECF---------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCE--EEETTEEEEGGGC---------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCcee--EEECCcccCcccC---------ChhhCCCcCC
Confidence 4578999988764 2222 3334778888764 7889999886
No 122
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.95 E-value=17 Score=25.93 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=28.9
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
....|+.|.+.+... +.+..+ |..+|..| ++|-.|++.|.+
T Consensus 14 ~~~~C~~C~~~I~~~-~~v~a~--~~~wH~~C---------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHG-QSLLAL--DKQWHVSC---------FKCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSS-CCEEET--TEEECTTT---------CBCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCC-eEEEEC--Cccccccc---------CCcCcCCCCcCC
Confidence 456799999987643 334443 77888766 478889988863
No 123
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=33.41 E-value=16 Score=33.44 Aligned_cols=50 Identities=22% Similarity=0.598 Sum_probs=32.1
Q ss_pred CCCCCCCCccccchhHHhHHhHHHHHhcCCChhhhcCeeEEEcCCCCCccccceeEeeecCCCCCCc
Q 024483 189 KYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSY 255 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~~~~~lD~~i~~~pmP~~y~~~~v~I~CnDC~~~s~~~fH~lg~kC~~C~Sy 255 (267)
...||+|+..-. ++.+ + .. ....+.| ...|+-|+ ..+|+.-.||++||+-
T Consensus 182 ~~~CPvCGs~P~-~s~l-~-~~---------g~~~G~R-~l~Cs~C~----t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPM-AGMI-R-QG---------GKETGLR-YLSCSLCA----CEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEE-EEEE-E-C-------------CCEE-EEEETTTC----CEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCc-eeEE-e-ec---------CCCCCcE-EEEeCCCC----CEEeecCcCCcCCCCC
Confidence 468999996543 1110 0 00 0123333 68899999 6788899999999985
No 124
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.34 E-value=12 Score=26.67 Aligned_cols=43 Identities=23% Similarity=0.532 Sum_probs=29.3
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccch
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~dm 202 (267)
.....|+.|.+.+... +.+. .=|..+|..| ++|-.|+++|.+.
T Consensus 13 ~~~~~C~~C~~~I~~~-e~v~--a~~~~wH~~C---------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVL-ERLC--VNGHFFHRSC---------FRCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTT-TBCC--BTTBCCBTTT---------CBCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccc-eEEE--ECCCeeCCCc---------CEEcCCCCCcCCC
Confidence 4456799999887543 2233 3377888776 4788899888643
No 125
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=33.16 E-value=15 Score=25.70 Aligned_cols=28 Identities=21% Similarity=0.666 Sum_probs=22.5
Q ss_pred hcCeeEEEcCCCCCccccceeEeeecCCCCC
Q 024483 223 RHKKVWILCNDCNDTTEVYFHIIGQKCSHCK 253 (267)
Q Consensus 223 ~~~~v~I~CnDC~~~s~~~fH~lg~kC~~C~ 253 (267)
+..+..|+|.-||.+ .||+--..|..||
T Consensus 12 r~~ktH~~CrRCG~~---syH~qK~~Ca~CG 39 (57)
T 1vq8_1 12 KNTTTHTKCRRCGEK---SYHTKKKVCSSCG 39 (57)
T ss_dssp CCCCCEEECTTTCSE---EEETTTTEETTTC
T ss_pred cCCCccccccccCCh---hhhcccccccccc
Confidence 344779999999985 5787778899998
No 126
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=32.97 E-value=16 Score=26.38 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=23.1
Q ss_pred eeeeCCCCccccc------cccCCcCCCccceeeccccccc
Q 024483 65 QVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (267)
Q Consensus 65 ~v~C~~C~~~q~v------~~~C~~Cg~~f~~y~C~~C~l~ 99 (267)
.|.|.-|..+|.+ ...|..||..+++-.=.+-+|.
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTGGKA~l~ 47 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIK 47 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCEEEECCSSSCEEC
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCEEeecCCcceeee
Confidence 5778888877776 2367888777766555544443
No 127
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=32.88 E-value=23 Score=18.37 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=13.1
Q ss_pred CCCCCCCCccccchhHH
Q 024483 189 KYCCPICSKSVIDMSRT 205 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~~ 205 (267)
.|.|++|.+++...+.+
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNL 18 (30)
T ss_dssp CCCCSSSSCCCSCSHHH
T ss_pred CccCCCCCCccCCHHHH
Confidence 37899999999865543
No 128
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=32.68 E-value=21 Score=22.62 Aligned_cols=15 Identities=13% Similarity=0.773 Sum_probs=10.0
Q ss_pred CCCCCCCccccchhH
Q 024483 190 YCCPICSKSVIDMSR 204 (267)
Q Consensus 190 ~~CPiCrks~~dm~~ 204 (267)
|.|++|.+++...+.
T Consensus 3 ~~C~~C~~~f~~~~~ 17 (60)
T 2adr_A 3 FVCEVCTRAFARQEH 17 (60)
T ss_dssp BCCTTTCCCBSCHHH
T ss_pred CcCCCCccccCCHHH
Confidence 677777777765443
No 129
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=31.80 E-value=35 Score=21.86 Aligned_cols=32 Identities=25% Similarity=0.795 Sum_probs=23.6
Q ss_pred cceeecCccCcccccccc--CcceeecCCCCCCCc
Q 024483 122 ENYFHCKRCGSCYSTSLR--NNHLCIENSMHHHCP 154 (267)
Q Consensus 122 ~~~fHC~~C~~C~s~~l~--~~H~C~e~~~~~~Cp 154 (267)
.+.|.|.. +.|++..+. +.--|..++.+.+|+
T Consensus 10 ~~~f~C~~-g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 10 KDQFQCRN-ERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp TTEEECTT-SCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CCceEcCC-CCEeChhhccCCCCCCCCCccccCCC
Confidence 35788888 889988765 566677778777775
No 130
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.68 E-value=26 Score=17.98 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=12.4
Q ss_pred CCCCCCCCccccchhH
Q 024483 189 KYCCPICSKSVIDMSR 204 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~ 204 (267)
.|.|+.|.+++...+.
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCCSSCCCCCCTTTH
T ss_pred CCcCCCCCcccCCHHH
Confidence 4789999999875544
No 131
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=31.64 E-value=27 Score=18.06 Aligned_cols=16 Identities=13% Similarity=0.727 Sum_probs=12.4
Q ss_pred CCCCCCCCccccchhH
Q 024483 189 KYCCPICSKSVIDMSR 204 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~ 204 (267)
.|.|++|.+++...+.
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 1ard_A 2 SFVCEVCTRAFARQEH 17 (29)
T ss_dssp CCBCTTTCCBCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 4789999999875443
No 132
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=31.44 E-value=24 Score=23.90 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=6.1
Q ss_pred CeeecCCCCc
Q 024483 106 GQFHCDDCGI 115 (267)
Q Consensus 106 ~~yHC~~Cgi 115 (267)
+--+|+.||.
T Consensus 22 P~IrCpyCGy 31 (48)
T 4ayb_P 22 PGVRCPYCGY 31 (48)
T ss_dssp SSSCCTTTCC
T ss_pred CCcccCccCc
Confidence 4456666664
No 133
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=30.67 E-value=14 Score=27.01 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=24.4
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
...|+.|.+.+..+.+.+..+ |..+|..|| +|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF---------~C~~C~~~L~ 44 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYK--NRFWHDTCF---------RCAKCLHPLA 44 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEET--TEEEETTTC---------CCSSSCCCTT
T ss_pred CCcCcccCCcccCCceEEEEC--ccChhhcCC---------cccccCCCCC
Confidence 456888888765322333333 667776554 6777887774
No 134
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=30.66 E-value=18 Score=27.75 Aligned_cols=30 Identities=37% Similarity=0.826 Sum_probs=24.6
Q ss_pred cCeeEEEcCCCCCccccceeEeeecCCCCC-------Ccc
Q 024483 224 HKKVWILCNDCNDTTEVYFHIIGQKCSHCK-------SYN 256 (267)
Q Consensus 224 ~~~v~I~CnDC~~~s~~~fH~lg~kC~~C~-------SyN 256 (267)
..+..|+|.-||.+ .||+--..|..|| +||
T Consensus 12 ~~KtHtlCrRCG~~---syH~qK~~Ca~CGyps~r~R~Yn 48 (94)
T 3iz5_l 12 RNKTHTLCVRCGRR---SFHLQKSTCSSCGYPAARIRKYN 48 (94)
T ss_dssp CCCSEEECTTTCSE---EEEGGGTEETTTCSSCSSCCCCS
T ss_pred CCCccceecCcCch---hhhcccccccccCCchhhccccc
Confidence 45679999999975 5787778999999 777
No 135
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.63 E-value=16 Score=26.67 Aligned_cols=65 Identities=20% Similarity=0.567 Sum_probs=36.7
Q ss_pred ccceeecCccCccccccccCcceeecCCCCCCCchhhhhhcccCCccEE-eccCCccChhhHHHHhc---CC-CCCCCCC
Q 024483 121 RENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK---RD-KYCCPIC 195 (267)
Q Consensus 121 ~~~~fHC~~C~~C~s~~l~~~H~C~e~~~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~~---~~-~~~CPiC 195 (267)
+.++..|+.|.. ...=.|.+ ..|.||... -+. ..+.. =.|.-.||..|++.=|. .+ ...||.|
T Consensus 7 ~~~~~~c~~C~~------~~~w~C~~----c~C~vC~~~-~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C 74 (77)
T 2e6s_A 7 GRNDTECDLCGG------DPEKKCHS----CSCRVCGGK-HEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74 (77)
T ss_dssp CCCCCCCTTTCS------CSSSCCSS----SSCSSSCCC-CCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTT
T ss_pred ccCCccChhhcC------CCCeECCC----CCCcCcCCc-CCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCc
Confidence 356666666654 12334432 268888853 111 12221 16788999999985333 23 5778888
Q ss_pred Cc
Q 024483 196 SK 197 (267)
Q Consensus 196 rk 197 (267)
..
T Consensus 75 ~~ 76 (77)
T 2e6s_A 75 KT 76 (77)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 136
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=30.10 E-value=23 Score=28.86 Aligned_cols=22 Identities=27% Similarity=0.907 Sum_probs=16.0
Q ss_pred ccccCCc--CCC--cc----ceeecccccc
Q 024483 77 VAQVCTN--CGV--NM----GEYFCDICKF 98 (267)
Q Consensus 77 v~~~C~~--Cg~--~f----~~y~C~~C~l 98 (267)
....||+ ||+ -| +|+||.+|.+
T Consensus 117 ~~~~c~~~~cg~g~fma~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 117 LRRECSNPTCGAGVFLANHKDRLYCGKCHS 146 (152)
T ss_dssp CSCBCCSTTSCSSSBEEECSSCEEESSSSS
T ss_pred CcCcCCCccCCCceEecccCCCcccCCCce
Confidence 3568999 987 33 5788888864
No 137
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=30.01 E-value=29 Score=21.39 Aligned_cols=31 Identities=32% Similarity=0.679 Sum_probs=20.0
Q ss_pred ceeecCccCcccccccc--CcceeecCCCCCCCc
Q 024483 123 NYFHCKRCGSCYSTSLR--NNHLCIENSMHHHCP 154 (267)
Q Consensus 123 ~~fHC~~C~~C~s~~l~--~~H~C~e~~~~~~Cp 154 (267)
+.|.|.. |.|++..+. +.--|..++.+.+||
T Consensus 5 ~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 5 FEFHCLS-GECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp TCEECTT-SCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CceEcCC-CCeechhhccCCCCCCCCCccccCCC
Confidence 4677765 778877654 445566666666664
No 138
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.00 E-value=20 Score=18.66 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=12.5
Q ss_pred CCCCCCCCccccchhH
Q 024483 189 KYCCPICSKSVIDMSR 204 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~ 204 (267)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQ 18 (28)
T ss_dssp SEECSSSCCEESCHHH
T ss_pred CccCCCCCcccCCHHH
Confidence 5789999999875543
No 139
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.98 E-value=32 Score=22.86 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=10.7
Q ss_pred CCCCCCCCccccchhH
Q 024483 189 KYCCPICSKSVIDMSR 204 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~ 204 (267)
.|.|++|.+.+...+.
T Consensus 17 ~~~C~~C~k~f~~~~~ 32 (74)
T 2lce_A 17 PYKCDRCQASFRYKGN 32 (74)
T ss_dssp SBCCTTSSCCBSCHHH
T ss_pred CeECCCCCceeCCHHH
Confidence 5777777777765443
No 140
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.92 E-value=20 Score=25.38 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=29.0
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccch
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~dm 202 (267)
.....|+-|.+.+.+ +.+. .=|..+|..| ++|-.|++.|.+.
T Consensus 13 ~~~~~C~~C~~~I~~--~~v~--a~~~~~H~~C---------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 13 LGKYICQKCHAIIDE--QPLI--FKNDPYHPDH---------FNCANCGKELTAD 54 (79)
T ss_dssp CCCCBCTTTCCBCCS--CCCC--CSSSCCCTTT---------SBCSSSCCBCCTT
T ss_pred cCCCCCccCCCEecc--eEEE--ECcceeCCCC---------CEeCCCCCccCCC
Confidence 345679999998762 2333 3378888765 5788999998743
No 141
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=29.86 E-value=30 Score=19.42 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=13.5
Q ss_pred CCCCCCCCCccccchhH
Q 024483 188 DKYCCPICSKSVIDMSR 204 (267)
Q Consensus 188 ~~~~CPiCrks~~dm~~ 204 (267)
..|.|++|.+++...+.
T Consensus 10 k~~~C~~C~k~f~~~~~ 26 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDH 26 (37)
T ss_dssp SSBCCTTTCCCBSSHHH
T ss_pred CCccCCCCCcccCcHHH
Confidence 46899999999986544
No 142
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.61 E-value=22 Score=23.41 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=19.6
Q ss_pred CCCCCCCCCccccchhHHhHHhHHHHHhcCCC
Q 024483 188 DKYCCPICSKSVIDMSRTWKRIDEEIEATVMP 219 (267)
Q Consensus 188 ~~~~CPiCrks~~dm~~~~~~lD~~i~~~pmP 219 (267)
..|.|++|.+.+...+.+.+-+..-....|-|
T Consensus 36 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p 67 (70)
T 1x5w_A 36 RPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred CCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence 35899999999986655544443333333433
No 143
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=29.54 E-value=18 Score=27.79 Aligned_cols=30 Identities=30% Similarity=0.833 Sum_probs=25.1
Q ss_pred cCeeEEEcCCCCCccccceeEeeecCCCCC-------Ccc
Q 024483 224 HKKVWILCNDCNDTTEVYFHIIGQKCSHCK-------SYN 256 (267)
Q Consensus 224 ~~~v~I~CnDC~~~s~~~fH~lg~kC~~C~-------SyN 256 (267)
..+..|+|.-||.+ .||+--..|..|| +||
T Consensus 12 ~~KtHtlCrRCG~~---syH~qK~~Ca~CGyps~r~R~Yn 48 (94)
T 4a18_A 12 HQKTHTLCRRCGKA---TYHKQKLRCAACGYPDAKMRRYD 48 (94)
T ss_dssp CCCCEEECTTTCSE---EEETTTTEESSSCGGGSSCCCCT
T ss_pred CCCccceecCcCch---hhhhccccccccCCcHHHhcCcc
Confidence 34678999999974 5788788999999 898
No 144
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.41 E-value=20 Score=25.02 Aligned_cols=39 Identities=21% Similarity=0.464 Sum_probs=26.9
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
...|+.|.+.+.+ +.+.. =|..+|..| ++|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~--~~v~a--~~~~~H~~C---------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLE--NYLSA--MDTVWHPEC---------FVCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCS--SCEEE--TTEEECTTT---------CBCSSSCCBSCS
T ss_pred CCccccCCCeecc--eeEEE--CCCeEecCc---------CChhhCCCCCCC
Confidence 4578899888754 23333 367788765 478889998874
No 145
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=29.29 E-value=15 Score=25.38 Aligned_cols=48 Identities=17% Similarity=0.470 Sum_probs=30.8
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhc---CCCCCCCCCCccc
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICSKSV 199 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~---~~~~~CPiCrks~ 199 (267)
..+..|.||.+. .+-+.--.|.-.||..|+..-+. .+...||.|....
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 445668888752 12111125788999999985433 2467899997654
No 146
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=28.91 E-value=31 Score=25.81 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=26.8
Q ss_pred ceeeeCCCCccccc------cccCCcCCCccceeeccccccc
Q 024483 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (267)
Q Consensus 64 ~~v~C~~C~~~q~v------~~~C~~Cg~~f~~y~C~~C~l~ 99 (267)
-.|.|..|..+|.| ...|..||..+++-.=.+-+|-
T Consensus 33 m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~PTGGKa~l~ 74 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKLS 74 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSCCCCSSSCCCCEECCSSBCEEC
T ss_pred EEEECCCCCCeeEEEecCCeEEEccccCCEEeccCCCCeEec
Confidence 47899999999887 2479999998877655554443
No 147
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=28.72 E-value=23 Score=27.71 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=22.8
Q ss_pred eeEEEcCCCCCccccceeEeeecCCCCCCccccc
Q 024483 226 KVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRS 259 (267)
Q Consensus 226 ~v~I~CnDC~~~s~~~fH~lg~kC~~C~SyNT~~ 259 (267)
..-..|.|||-+.... =...-+|+.|+|-|...
T Consensus 65 v~p~~C~~CG~~F~~~-~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKAE-INIPSRCPKCKSEWIEE 97 (105)
T ss_dssp ECCCBBTTTCCBCCCC-SSCCSSCSSSCCCCBCC
T ss_pred EECcChhhCcCeeccc-CCCCCCCcCCCCCccCC
Confidence 3457899999875111 02346999999999765
No 148
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=28.38 E-value=32 Score=23.98 Aligned_cols=26 Identities=23% Similarity=0.645 Sum_probs=21.1
Q ss_pred ccceeeeCCCCccccc-cccCCcCCCc
Q 024483 62 DVKQVICSVCDTEQPV-AQVCTNCGVN 87 (267)
Q Consensus 62 ~~~~v~C~~C~~~q~v-~~~C~~Cg~~ 87 (267)
....++|+.|+...++ +..|..||..
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred HhchhhhccccCcCCcccccccCCCCC
Confidence 4467999999999888 5789988854
No 149
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.33 E-value=22 Score=25.37 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=24.9
Q ss_pred ceeeeCCCCccccc------cccCCcCCCccceeecccccc
Q 024483 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKF 98 (267)
Q Consensus 64 ~~v~C~~C~~~q~v------~~~C~~Cg~~f~~y~C~~C~l 98 (267)
-.|.|..|..+|.+ ...|..||..+++-.=.+-+|
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PTGGKa~l 54 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIV 54 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCEECSSSCCEEEECCSSSCEE
T ss_pred EEEECCCCCCeeEEEecCCeEEEccCcCCEEecCCCCcEEE
Confidence 36888889888877 247888888887655444444
No 150
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.22 E-value=42 Score=30.59 Aligned_cols=25 Identities=24% Similarity=0.642 Sum_probs=21.2
Q ss_pred cceeeeCCCCcccccc-ccCCcCCCc
Q 024483 63 VKQVICSVCDTEQPVA-QVCTNCGVN 87 (267)
Q Consensus 63 ~~~v~C~~C~~~q~v~-~~C~~Cg~~ 87 (267)
.+-+.|+.|+++..+. ..|++||..
T Consensus 206 ~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 206 LRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3479999999998774 689999987
No 151
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.18 E-value=52 Score=23.51 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=29.6
Q ss_pred CCCchhhhhhcccCCccEE-eccCCccChhhHHHHh----cCCCCCCCCCCcccc
Q 024483 151 HHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMI----KRDKYCCPICSKSVI 200 (267)
Q Consensus 151 ~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~----~~~~~~CPiCrks~~ 200 (267)
..| ||.... +.....+. -.|.-.||..|+.--. ....|.||.|+.+..
T Consensus 13 ~~C-~C~~~~-d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYC-LCRQPY-NVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCS-TTSCSC-CSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEE-EcCCcc-CCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 345 787652 21122222 3689999999985211 125799999997653
No 152
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=27.90 E-value=43 Score=22.50 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCCCCCCCccccchhHHhHHhHHHHHhcCCChhhhcCeeEEEcCCCCCccc
Q 024483 189 KYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTE 239 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~~~~~lD~~i~~~pmP~~y~~~~v~I~CnDC~~~s~ 239 (267)
-|.|++|.|++...+.+-+-+- + ..+.+ ...|..|++...
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~--~--------Ht~ek-p~~C~~C~k~F~ 43 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRR--A--------HLGYR-PRSCPECGKCFR 43 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHH--H--------HHTCC-CEECTTTCCEES
T ss_pred CccCCCCCCEeCCHHHHHHHHH--H--------hCCCc-CeECCCCCCCcC
Confidence 4788888888875544322211 1 11222 366888887543
No 153
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=27.89 E-value=35 Score=22.27 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=4.9
Q ss_pred cCCcCCCccc
Q 024483 80 VCTNCGVNMG 89 (267)
Q Consensus 80 ~C~~Cg~~f~ 89 (267)
.|+.||..|.
T Consensus 16 ~C~~C~k~F~ 25 (62)
T 1vd4_A 16 KCPVCSSTFT 25 (62)
T ss_dssp ECSSSCCEEE
T ss_pred cCCCCCchhc
Confidence 4555555443
No 154
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.87 E-value=19 Score=24.29 Aligned_cols=44 Identities=20% Similarity=0.412 Sum_probs=29.1
Q ss_pred CCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccch
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~dm 202 (267)
.....|+.|.+.+.... .+ +..=|..+|..|| +|-.|++++.+.
T Consensus 9 ~~~~~C~~C~~~i~~~e-~~-~~~~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 9 SASATCERCKGGFAPAE-KI-VNSNGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp CTTCBCTTTCCBCCTTC-EE-EEETTEEEETTTS---------SCTTTCCCCGGG
T ss_pred cCCccchhcCccccCCc-eE-EEeCcCeeCcCCC---------cccCCCCCCCCC
Confidence 44567999999875432 22 1233677887665 788899998754
No 155
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.63 E-value=20 Score=18.85 Aligned_cols=16 Identities=25% Similarity=0.829 Sum_probs=12.4
Q ss_pred CCCCCCCCccccchhH
Q 024483 189 KYCCPICSKSVIDMSR 204 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~ 204 (267)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLAS 18 (27)
T ss_dssp TEEETTTTEEESCHHH
T ss_pred CcCCCCCCcccCCHHH
Confidence 4789999999875443
No 156
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.49 E-value=24 Score=18.28 Aligned_cols=16 Identities=25% Similarity=0.771 Sum_probs=12.5
Q ss_pred CCCCCCCCccccchhH
Q 024483 189 KYCCPICSKSVIDMSR 204 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~ 204 (267)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSA 18 (27)
T ss_dssp CEECSSSSCEESSHHH
T ss_pred CccCCCcChhhCCHHH
Confidence 4789999999876543
No 157
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.35 E-value=34 Score=18.92 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=13.8
Q ss_pred CCCCCCCCCccccchhHH
Q 024483 188 DKYCCPICSKSVIDMSRT 205 (267)
Q Consensus 188 ~~~~CPiCrks~~dm~~~ 205 (267)
..|.|++|.+++...+.+
T Consensus 8 ~~~~C~~C~k~f~~~~~l 25 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGTL 25 (36)
T ss_dssp SSCBCTTTCCBCSSHHHH
T ss_pred CCeecCcCCCCcCchHHH
Confidence 468999999999865443
No 158
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=27.25 E-value=30 Score=18.12 Aligned_cols=16 Identities=19% Similarity=0.679 Sum_probs=12.4
Q ss_pred CCCCCCCCccccchhH
Q 024483 189 KYCCPICSKSVIDMSR 204 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~ 204 (267)
.|.|+.|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1paa_A 2 AYACGLCNRAFTRRDL 17 (30)
T ss_dssp CSBCTTTCCBCSSSHH
T ss_pred CcCCcccCcccCChHH
Confidence 4789999999875544
No 159
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=26.86 E-value=39 Score=23.22 Aligned_cols=15 Identities=20% Similarity=0.724 Sum_probs=8.4
Q ss_pred CCCCCCCCccccchh
Q 024483 189 KYCCPICSKSVIDMS 203 (267)
Q Consensus 189 ~~~CPiCrks~~dm~ 203 (267)
.|.|++|.+++...+
T Consensus 31 ~~~C~~C~k~f~~~~ 45 (88)
T 1llm_C 31 PFACDICGRKFARSD 45 (88)
T ss_dssp CEECTTTCCEESSHH
T ss_pred CccCCCCCCccCCHH
Confidence 456666666655433
No 160
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=26.81 E-value=25 Score=24.58 Aligned_cols=19 Identities=21% Similarity=0.551 Sum_probs=14.2
Q ss_pred eeCCCCccccccccCCcCCC
Q 024483 67 ICSVCDTEQPVAQVCTNCGV 86 (267)
Q Consensus 67 ~C~~C~~~q~v~~~C~~Cg~ 86 (267)
-|+.|+..++.. .|+|||.
T Consensus 3 AC~~C~~v~~~~-~CpnC~~ 21 (59)
T 3lpe_B 3 ACLKCKYLTNDE-ICPICHS 21 (59)
T ss_dssp EETTTCBEESSS-BCTTTCC
T ss_pred ccccCCcccCCC-CCCCCCC
Confidence 478888777665 6888886
No 161
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=26.68 E-value=55 Score=28.26 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=47.0
Q ss_pred cccCccceeecCccCccccccccCcceeecCC---CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCC----
Q 024483 117 RIGGRENYFHCKRCGSCYSTSLRNNHLCIENS---MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDK---- 189 (267)
Q Consensus 117 R~G~~~~~fHC~~C~~C~s~~l~~~H~C~e~~---~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~---- 189 (267)
+.|.+.....|.+|+.=.+.+.+...+=.... ....|.-|.-.+ ....+. ..=++.++....
T Consensus 68 ~~~~~~G~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~l--r~YGIT---------~eey~~L~e~Qg~~~~ 136 (200)
T 3gox_A 68 RTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNI--DGVKLS---------STEKKKMDEIAPPKGS 136 (200)
T ss_dssp GSSTTSSEEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHH--HCSCCC---------HHHHHHHHTTCCCTTC
T ss_pred eccccCCCeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhcc--CCcCCC---------HHHHHHHHHHcccCCC
Confidence 78888999999999997777665444333233 567899997643 111110 111455555445
Q ss_pred -CCCCCCCcccc
Q 024483 190 -YCCPICSKSVI 200 (267)
Q Consensus 190 -~~CPiCrks~~ 200 (267)
.+||||++...
T Consensus 137 ~G~C~ICg~~~~ 148 (200)
T 3gox_A 137 VFTCPICEKRSI 148 (200)
T ss_dssp EEECTTTCCEEE
T ss_pred CCcCcCCCCCCC
Confidence 78999998776
No 162
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=26.57 E-value=33 Score=24.85 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=18.6
Q ss_pred ccceeeeCCCCccccccccCCcCCCc
Q 024483 62 DVKQVICSVCDTEQPVAQVCTNCGVN 87 (267)
Q Consensus 62 ~~~~v~C~~C~~~q~v~~~C~~Cg~~ 87 (267)
...+.-|..|...+ ..+.||+||..
T Consensus 8 ~~~~~AC~~C~~~~-~~~~CPnC~s~ 32 (69)
T 1ryq_A 8 GSSEKACRHCHYIT-SEDRCPVCGSR 32 (69)
T ss_dssp ---CEEETTTCBEE-SSSSCTTTCCC
T ss_pred CchhhhHHhCCccc-cCCcCCCccCC
Confidence 34678899999977 77899999843
No 163
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=26.55 E-value=76 Score=22.94 Aligned_cols=14 Identities=14% Similarity=0.726 Sum_probs=8.2
Q ss_pred cceeecCccCcccc
Q 024483 122 ENYFHCKRCGSCYS 135 (267)
Q Consensus 122 ~~~fHC~~C~~C~s 135 (267)
+....|+.|..-+-
T Consensus 39 ~~ll~CD~C~~~yH 52 (77)
T 3shb_A 39 DKQLMCDECDMAFH 52 (77)
T ss_dssp GGEEECTTTCCEEE
T ss_pred cceeEeCCCCCccC
Confidence 45666776665443
No 164
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=26.41 E-value=29 Score=25.01 Aligned_cols=7 Identities=57% Similarity=1.578 Sum_probs=4.1
Q ss_pred ecCCCCc
Q 024483 109 HCDDCGI 115 (267)
Q Consensus 109 HC~~Cgi 115 (267)
+|+.||-
T Consensus 47 rCp~CG~ 53 (70)
T 1twf_L 47 RCKDCGH 53 (70)
T ss_dssp CCSSSCC
T ss_pred cCCCCCc
Confidence 5666653
No 165
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=26.40 E-value=24 Score=24.75 Aligned_cols=30 Identities=23% Similarity=0.605 Sum_probs=22.7
Q ss_pred eEEEcCCCCCccccceeEeeecCCCCCCccccccC
Q 024483 227 VWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIA 261 (267)
Q Consensus 227 v~I~CnDC~~~s~~~fH~lg~kC~~C~SyNT~~~~ 261 (267)
..+.|..||+. ...| +-|++||.|+-+++-
T Consensus 29 ~l~~c~~cGe~--~~~H---~vc~~CG~Y~gr~V~ 58 (60)
T 3v2d_5 29 TLVPCPECKAM--KPPH---TVCPECGYYAGRKVL 58 (60)
T ss_dssp CCEECTTTCCE--ECTT---SCCTTTCEETTEECC
T ss_pred ceeECCCCCCe--ecce---EEcCCCCcCCCEEee
Confidence 46889999973 3345 459999999998763
No 166
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=26.27 E-value=35 Score=18.96 Aligned_cols=17 Identities=29% Similarity=0.800 Sum_probs=13.2
Q ss_pred CCCCCCCCccccchhHH
Q 024483 189 KYCCPICSKSVIDMSRT 205 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~~ 205 (267)
.|.|++|.+.+...+.+
T Consensus 2 p~~C~~C~k~F~~~~~L 18 (33)
T 1rim_A 2 KFACPECPKRFMRSDHL 18 (33)
T ss_dssp CCCCSSSCCCCSSHHHH
T ss_pred cccCCCCCchhCCHHHH
Confidence 37899999999865543
No 167
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.93 E-value=24 Score=23.41 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=8.9
Q ss_pred CCCCCCCCccccch
Q 024483 189 KYCCPICSKSVIDM 202 (267)
Q Consensus 189 ~~~CPiCrks~~dm 202 (267)
.|.|++|.+.+...
T Consensus 14 ~~~C~~C~k~f~~~ 27 (72)
T 1x6e_A 14 PYGCVECGKAFSRS 27 (72)
T ss_dssp CEECSSSCCEESSH
T ss_pred CccCCCCCCccCCH
Confidence 46677777766544
No 168
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=25.87 E-value=26 Score=18.25 Aligned_cols=16 Identities=31% Similarity=0.877 Sum_probs=12.0
Q ss_pred CCCCCCCCccccchhH
Q 024483 189 KYCCPICSKSVIDMSR 204 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~ 204 (267)
.|.|++|.+.+...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (29)
T 1rik_A 2 KFACPECPKRFMRSDH 17 (29)
T ss_dssp CEECSSSSCEESCSHH
T ss_pred CccCCCCCchhCCHHH
Confidence 3789999999875543
No 169
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.85 E-value=28 Score=17.92 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=12.2
Q ss_pred CCCCCCCCccccchhH
Q 024483 189 KYCCPICSKSVIDMSR 204 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~ 204 (267)
.|.|++|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGN 17 (29)
T ss_dssp CEECTTTSCEESCHHH
T ss_pred CccCCCCCCccCChhH
Confidence 3789999999875544
No 170
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.38 E-value=29 Score=23.40 Aligned_cols=38 Identities=24% Similarity=0.589 Sum_probs=26.7
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
...|+.|.+.+.. +.+.. =|..+|..|| +|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~CF---------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS--GGITY--QDQPWHADCF---------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT--TCEEE--TTEEECTTTT---------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc--ceEEE--CccccccCcC---------EECCCCCCCC
Confidence 4578999988753 23333 3778887664 7888998886
No 171
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.32 E-value=64 Score=21.45 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=10.5
Q ss_pred CCCCCCCCccccchhHH
Q 024483 189 KYCCPICSKSVIDMSRT 205 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~~ 205 (267)
.|.|++|.+.+...+.+
T Consensus 7 ~~~C~~C~k~f~~~~~L 23 (78)
T 2d9h_A 7 GLQCEICGFTCRQKASL 23 (78)
T ss_dssp CEECSSSCCEESSHHHH
T ss_pred CeECCCCCCeeCCHHHH
Confidence 46677777777654433
No 172
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.26 E-value=29 Score=17.97 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=12.5
Q ss_pred CCCCCCCCccccchhH
Q 024483 189 KYCCPICSKSVIDMSR 204 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~ 204 (267)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~~~f~~~~~ 18 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTS 18 (30)
T ss_dssp CEECTTTCCEESCHHH
T ss_pred CccCCCCCcccCCHHH
Confidence 4789999999876544
No 173
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.99 E-value=33 Score=23.82 Aligned_cols=39 Identities=23% Similarity=0.503 Sum_probs=27.2
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
....|+.|.+.+.. +. +..=|..+|..|| +|-.|++.|.
T Consensus 14 ~~~~C~~C~~~I~~--~~--v~a~~~~~H~~CF---------~C~~C~~~L~ 52 (80)
T 2cuq_A 14 FAPRCARCSKTLTQ--GG--VTYRDQPWHRECL---------VCTGCQTPLA 52 (80)
T ss_dssp SSCCCTTTCCCCCS--CC--EESSSSEECTTTC---------BCSSSCCBCT
T ss_pred cCCcCCCCCCEecC--cE--EEECCchhhhhhC---------CcccCCCcCC
Confidence 34679999988753 22 3344788887664 7888998885
No 174
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=24.66 E-value=21 Score=30.16 Aligned_cols=45 Identities=18% Similarity=0.514 Sum_probs=31.4
Q ss_pred CCCCCCchhhhhhcccCCccEEe---ccCCccChhhHHHHhc---CCCCCCCCCCccc
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVM---KCGHTMHCECYHEMIK---RDKYCCPICSKSV 199 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~L---pCGH~~H~~C~~~~~~---~~~~~CPiCrks~ 199 (267)
..+..|.||... + .+| .|.-.||..|+..-+. .+...||.|++.-
T Consensus 5 ~~~~~C~~C~~~----g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----G---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----E---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----C---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 445678899753 1 133 5789999999976554 2468899998753
No 175
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.60 E-value=27 Score=24.44 Aligned_cols=40 Identities=20% Similarity=0.583 Sum_probs=27.1
Q ss_pred CCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
....|+.|.+.+.. +.+. .=|..+|..|| +|-.|++.|.+
T Consensus 14 ~~~~C~~C~~~I~~--~~v~--a~~~~wH~~CF---------~C~~C~~~L~~ 53 (81)
T 1v6g_A 14 YGTRCFSCDQFIEG--EVVS--ALGKTYHPDCF---------VCAVCRLPFPP 53 (81)
T ss_dssp CCCBCTTTCCBCCS--CCEE--ETTEEECTTTS---------SCSSSCCCCCS
T ss_pred hCCcCccccCEecc--ceEE--ECCceeCccCC---------ccccCCCCCCC
Confidence 34579999998752 2233 34778887654 68889988863
No 176
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.48 E-value=39 Score=22.60 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=8.9
Q ss_pred CCCCCCCCccccchh
Q 024483 189 KYCCPICSKSVIDMS 203 (267)
Q Consensus 189 ~~~CPiCrks~~dm~ 203 (267)
.|.|++|.+.+....
T Consensus 15 ~~~C~~C~k~f~~~~ 29 (77)
T 2ct1_A 15 PYECYICHARFTQSG 29 (77)
T ss_dssp SEECTTTCCEESCHH
T ss_pred CeECCCcCchhCCHH
Confidence 466666666665443
No 177
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.47 E-value=23 Score=27.16 Aligned_cols=38 Identities=24% Similarity=0.502 Sum_probs=25.3
Q ss_pred CCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCcccc
Q 024483 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (267)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~ 200 (267)
.|+.|.+.+......+..+ |..+|..|| +|-.|++.|.
T Consensus 10 ~C~~C~~~I~~~e~~~~a~--~~~~H~~CF---------~C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVK--DKVYHLECF---------KCAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCS--SCCCCTTTC---------BCTTTCCBCC
T ss_pred cccCCCCeecCCceEEEEC--CcccccccC---------ccccCCCCCC
Confidence 6888888775432222333 788887664 6778888884
No 178
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.29 E-value=16 Score=18.89 Aligned_cols=15 Identities=33% Similarity=0.791 Sum_probs=11.1
Q ss_pred CCCCCCCCccccchh
Q 024483 189 KYCCPICSKSVIDMS 203 (267)
Q Consensus 189 ~~~CPiCrks~~dm~ 203 (267)
.|.|++|++++...+
T Consensus 2 p~~C~~C~k~f~~~~ 16 (26)
T 2lvu_A 2 PYVCERCGKRFVQSS 16 (26)
Confidence 378999998887543
No 179
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.40 E-value=24 Score=23.95 Aligned_cols=40 Identities=25% Similarity=0.702 Sum_probs=27.1
Q ss_pred CCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccch
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~dm 202 (267)
...|+.|.+.+.+ +.+. .=|..+|..|| +|-.|++.|.+.
T Consensus 5 ~~~C~~C~~~I~~--~~~~--a~~~~~H~~CF---------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG--RVIK--AMNNSWHPECF---------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS--CCEE--ETTEEECTTTS---------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc--eEEE--ECcccccccCC---------EeCCCCCcCCCC
Confidence 4568888888753 2233 33778887764 788899888754
No 180
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=23.65 E-value=33 Score=32.28 Aligned_cols=48 Identities=19% Similarity=0.524 Sum_probs=33.3
Q ss_pred CCCCchhhhhhcccCCccEEeccCCc--cChhhHHHHhc-CCCCCCCCCCcccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHT--MHCECYHEMIK-RDKYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~--~H~~C~~~~~~-~~~~~CPiCrks~~ 200 (267)
...|||=+..| ..|++-..|.|+ |-..=|.++.. ....+||+|.+.+.
T Consensus 249 SL~CPlS~~ri---~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRM---KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBC---SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccc---cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 45799877764 258888999987 54443444332 35789999999884
No 181
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=23.51 E-value=45 Score=22.75 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=5.8
Q ss_pred CCCCchhhhh
Q 024483 150 HHHCPICYEY 159 (267)
Q Consensus 150 ~~~CpICle~ 159 (267)
.-.|+-|...
T Consensus 52 ~W~C~~C~~~ 61 (66)
T 2yt5_A 52 KWLCRQCVFA 61 (66)
T ss_dssp CCCCHHHHHT
T ss_pred CEECCCCcCc
Confidence 4457766653
No 182
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.43 E-value=38 Score=25.54 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=25.5
Q ss_pred eeeeCCCCccccc------cccCCcCCCccceeeccccccc
Q 024483 65 QVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (267)
Q Consensus 65 ~v~C~~C~~~q~v------~~~C~~Cg~~f~~y~C~~C~l~ 99 (267)
.|.|..|..+|.| ...|..||..+++-.=++-+|-
T Consensus 36 ~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~PTGGKa~l~ 76 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLT 76 (86)
T ss_dssp EEECTTTCCEEEEETTCSSCCCCSSSCCCCSCCCSSSCCCS
T ss_pred EEECCCCCCeeEEEecCCcEEEccCCCCEeecCCCCCEEec
Confidence 5889899888877 2478888888877655555444
No 183
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=23.41 E-value=45 Score=25.15 Aligned_cols=65 Identities=31% Similarity=0.541 Sum_probs=41.6
Q ss_pred CCCCCCchhhhhhcccCCccEEecc----CCccChhhHHHHhcC----CCCCCCCCCcccc-chhHHhHHhHHHHHhc
Q 024483 148 SMHHHCPICYEYLFDSLRNTTVMKC----GHTMHCECYHEMIKR----DKYCCPICSKSVI-DMSRTWKRIDEEIEAT 216 (267)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpC----GH~~H~~C~~~~~~~----~~~~CPiCrks~~-dm~~~~~~lD~~i~~~ 216 (267)
+....|.+|.|.|-+ ..+..| +|-|.-.|-.+.++. ...-||.=.|-.+ ....-|.-+..||+++
T Consensus 13 ~a~l~CtlC~erLEd----tHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~gS~~PWAFmqgEIatI 86 (93)
T 2cs3_A 13 SGPLCCTICHERLED----THFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVPWAFMQGEIATI 86 (93)
T ss_dssp CCSCCCSSSCSCCSS----TTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSSSSSBCCCCHHHHHHH
T ss_pred CCeeEeecchhhhcc----CceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccCCCcCchHHHhhHHHHH
Confidence 445679999999844 345566 699999999988862 2233554444333 2223477777777754
No 184
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=23.25 E-value=30 Score=25.82 Aligned_cols=36 Identities=17% Similarity=0.392 Sum_probs=25.6
Q ss_pred ceeeeCCCCccccc------cccCCcCCCccceeeccccccc
Q 024483 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (267)
Q Consensus 64 ~~v~C~~C~~~q~v------~~~C~~Cg~~f~~y~C~~C~l~ 99 (267)
-.|.|.-|..+|.| ...|..||..+++-.=.+-+|.
T Consensus 31 m~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~PTGGKA~l~ 72 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQSTIICEKCSAILCKPTGGKVQIQ 72 (81)
T ss_dssp EEEECSSSCCEEEEETTCSSCEECSSSCCEEEEECSSCEEEC
T ss_pred EEeECCCCCCeeEEEecCccEEEccCCCCEEeecCCCCeEec
Confidence 46888888888877 2478888888877655554444
No 185
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.67 E-value=74 Score=18.77 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=14.1
Q ss_pred CCCCCCCCCccccchhHH
Q 024483 188 DKYCCPICSKSVIDMSRT 205 (267)
Q Consensus 188 ~~~~CPiCrks~~dm~~~ 205 (267)
..|.|++|.+++...+.+
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (46)
T 2emz_A 11 RPFKCNECGKGFGRRSHL 28 (46)
T ss_dssp CSCCCSSSCCCCSSHHHH
T ss_pred CCeECCCCCcccCCHHHH
Confidence 468999999999865544
No 186
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.55 E-value=33 Score=18.80 Aligned_cols=17 Identities=29% Similarity=0.778 Sum_probs=13.3
Q ss_pred CCCCCCCCCccccchhH
Q 024483 188 DKYCCPICSKSVIDMSR 204 (267)
Q Consensus 188 ~~~~CPiCrks~~dm~~ 204 (267)
..|.|++|.+++...+.
T Consensus 6 k~~~C~~C~k~f~~~~~ 22 (35)
T 2elx_A 6 SGYVCALCLKKFVSSIR 22 (35)
T ss_dssp CSEECSSSCCEESSHHH
T ss_pred CCeECCCCcchhCCHHH
Confidence 45899999999986543
No 187
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=22.43 E-value=36 Score=31.94 Aligned_cols=48 Identities=23% Similarity=0.552 Sum_probs=33.9
Q ss_pred CCCCchhhhhhcccCCccEEeccCCc--cChhhHHHHhc-CCCCCCCCCCcccc
Q 024483 150 HHHCPICYEYLFDSLRNTTVMKCGHT--MHCECYHEMIK-RDKYCCPICSKSVI 200 (267)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~--~H~~C~~~~~~-~~~~~CPiCrks~~ 200 (267)
...|||=+..| ..|++-..|.|+ |-..=|.++.. ....+||+|.+.+.
T Consensus 215 SL~CPlS~~ri---~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRL---TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBC---SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCcccee---ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 34699877664 258888999987 55444444443 35689999999985
No 188
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=22.41 E-value=9.5 Score=25.44 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=26.3
Q ss_pred CCchhhhhhcccCCccEE-e-ccCCccChhhHHHHh---cCCCCCCCCCC
Q 024483 152 HCPICYEYLFDSLRNTTV-M-KCGHTMHCECYHEMI---KRDKYCCPICS 196 (267)
Q Consensus 152 ~CpICle~lf~s~~~v~~-L-pCGH~~H~~C~~~~~---~~~~~~CPiCr 196 (267)
.|+||..+..+. ...+. - .|.-.||..|+.--. ....|.||.|+
T Consensus 4 ~cc~C~~p~~~~-~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDK-VDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTT-CCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCC-CcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477887764222 22333 2 588899999975311 12568899885
No 189
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=22.37 E-value=1.1e+02 Score=20.59 Aligned_cols=23 Identities=35% Similarity=0.996 Sum_probs=13.9
Q ss_pred CCCCcccccCccceeecCccCcccc
Q 024483 111 DDCGICRIGGRENYFHCKRCGSCYS 135 (267)
Q Consensus 111 ~~CgiCR~G~~~~~fHC~~C~~C~s 135 (267)
+.|.+|+.+| +..-|+.|..-+-
T Consensus 6 ~~C~vC~~~g--~ll~Cd~C~~~fH 28 (60)
T 2puy_A 6 DFCSVCRKSG--QLLMCDTCSRVYH 28 (60)
T ss_dssp SSCTTTCCCS--SCEECSSSSCEEC
T ss_pred CCCcCCCCCC--cEEEcCCCCcCEE
Confidence 3466676654 5677777765443
No 190
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=22.07 E-value=56 Score=22.10 Aligned_cols=17 Identities=18% Similarity=0.561 Sum_probs=10.5
Q ss_pred CCCCCCCCCccccchhH
Q 024483 188 DKYCCPICSKSVIDMSR 204 (267)
Q Consensus 188 ~~~~CPiCrks~~dm~~ 204 (267)
..+.|++|.+.+...+.
T Consensus 33 ~~~~C~~C~~~f~~~~~ 49 (90)
T 1a1h_A 33 KPFQCRICMRNFSRSDH 49 (90)
T ss_dssp CCEECTTTCCEESCHHH
T ss_pred CCccCCCCCcccCCHHH
Confidence 34677777777665443
No 191
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.76 E-value=36 Score=18.96 Aligned_cols=17 Identities=18% Similarity=0.385 Sum_probs=13.1
Q ss_pred CCCCCCCCCccccchhH
Q 024483 188 DKYCCPICSKSVIDMSR 204 (267)
Q Consensus 188 ~~~~CPiCrks~~dm~~ 204 (267)
..|.|++|.+.+...+.
T Consensus 8 k~~~C~~C~k~f~~~~~ 24 (36)
T 2els_A 8 KIFTCEYCNKVFKFKHS 24 (36)
T ss_dssp CCEECTTTCCEESSHHH
T ss_pred CCEECCCCCceeCCHHH
Confidence 35899999999875443
No 192
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=21.74 E-value=32 Score=26.51 Aligned_cols=31 Identities=29% Similarity=0.767 Sum_probs=24.7
Q ss_pred cCeeEEEcCCCCCccccceeEeeecCCCCC-------Cccc
Q 024483 224 HKKVWILCNDCNDTTEVYFHIIGQKCSHCK-------SYNT 257 (267)
Q Consensus 224 ~~~v~I~CnDC~~~s~~~fH~lg~kC~~C~-------SyNT 257 (267)
..+..++|.-||.. .||+--..|..|| +||=
T Consensus 12 ~~KtH~lCrRCG~~---sfH~qK~~CgkCGYpa~k~R~ynW 49 (97)
T 2zkr_2 12 RNKTHTLCRRCGSK---AYHLQKSTCGKCGYPAKRKRKYNW 49 (97)
T ss_dssp CCCCEECCTTTCSS---CEETTSCCBTTTCTTTSSCCCCSS
T ss_pred cCCCCCcCCCCCCc---cCcCccccCcccCCchHhccCcch
Confidence 34678999999986 4588888899998 7773
No 193
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=21.60 E-value=49 Score=22.61 Aligned_cols=14 Identities=43% Similarity=1.196 Sum_probs=9.0
Q ss_pred cceeecccccc-ccC
Q 024483 88 MGEYFCDICKF-YDD 101 (267)
Q Consensus 88 f~~y~C~~C~l-~dd 101 (267)
|.+|.|.+|-+ ||.
T Consensus 1 m~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDE 15 (55)
T ss_dssp CCEEEETTTCCEEET
T ss_pred CCcEEeCCCCeEECC
Confidence 45788888854 443
No 194
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=21.57 E-value=53 Score=20.97 Aligned_cols=11 Identities=45% Similarity=1.177 Sum_probs=5.9
Q ss_pred CcCeeecCCCC
Q 024483 104 EKGQFHCDDCG 114 (267)
Q Consensus 104 ~k~~yHC~~Cg 114 (267)
.|+-|.|..||
T Consensus 25 ~~qg~~C~~C~ 35 (50)
T 1ptq_A 25 VKQGLKCEDCG 35 (50)
T ss_dssp SSCEEEETTTC
T ss_pred CCccCEeCCCC
Confidence 34555555555
No 195
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.53 E-value=39 Score=19.48 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=13.5
Q ss_pred CCCCCCCCCccccchhH
Q 024483 188 DKYCCPICSKSVIDMSR 204 (267)
Q Consensus 188 ~~~~CPiCrks~~dm~~ 204 (267)
..|.|++|.+++...+.
T Consensus 10 k~~~C~~C~k~f~~~~~ 26 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQKGS 26 (42)
T ss_dssp CSBCCTTTTCCBSSHHH
T ss_pred CCeeCCCccchhCCHHH
Confidence 46899999999986544
No 196
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.40 E-value=33 Score=24.62 Aligned_cols=43 Identities=16% Similarity=0.386 Sum_probs=29.8
Q ss_pred cCCCCCCCchhhhhhcccCCccEEeccCCccChhhHHHHhcCCCCCCCCCCccccc
Q 024483 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (267)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrks~~d 201 (267)
+......|+.|.+.+.. +. +..=|..+|..|| +|-.|++.|.+
T Consensus 21 ~~~~~~~C~~C~~~I~~--~~--v~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (90)
T 2dar_A 21 AGKRTPMCAHCNQVIRG--PF--LVALGKSWHPEEF---------NCAHCKNTMAY 63 (90)
T ss_dssp TTTCCCBBSSSCCBCCS--CE--EEETTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCCCCCccCCCEecc--eE--EEECCccccccCC---------ccCCCCCCCCC
Confidence 34456679999998742 22 3344888887664 78889998874
No 197
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.25 E-value=51 Score=18.93 Aligned_cols=17 Identities=29% Similarity=0.737 Sum_probs=13.5
Q ss_pred CCCCCCCCCccccchhH
Q 024483 188 DKYCCPICSKSVIDMSR 204 (267)
Q Consensus 188 ~~~~CPiCrks~~dm~~ 204 (267)
..|.|++|.+++...+.
T Consensus 9 k~~~C~~C~k~f~~~~~ 25 (42)
T 2yte_A 9 KPYSCAECKETFSDNNR 25 (42)
T ss_dssp CSCBCTTTCCBCSSHHH
T ss_pred CCeECCCCCCccCCHHH
Confidence 46899999999986544
No 198
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.75 E-value=20 Score=18.87 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=11.2
Q ss_pred CCCCCCCCccccchh
Q 024483 189 KYCCPICSKSVIDMS 203 (267)
Q Consensus 189 ~~~CPiCrks~~dm~ 203 (267)
.|.|++|.+++...+
T Consensus 2 ~~~C~~C~k~f~~~~ 16 (29)
T 2lvt_A 2 PCQCVMCGKAFTQAS 16 (29)
Confidence 378999998887543
No 199
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.64 E-value=38 Score=18.87 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.1
Q ss_pred CCCCCCCCCccccchhH
Q 024483 188 DKYCCPICSKSVIDMSR 204 (267)
Q Consensus 188 ~~~~CPiCrks~~dm~~ 204 (267)
..|.|++|.+++...+.
T Consensus 8 k~~~C~~C~k~f~~~~~ 24 (36)
T 2elv_A 8 LLYDCHICERKFKNELD 24 (36)
T ss_dssp CCEECSSSCCEESSHHH
T ss_pred CCeECCCCCCccCCHHH
Confidence 35899999999885543
No 200
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=20.64 E-value=41 Score=30.10 Aligned_cols=19 Identities=32% Similarity=1.184 Sum_probs=11.7
Q ss_pred ccCCcCCC----------ccceeeccccc
Q 024483 79 QVCTNCGV----------NMGEYFCDICK 97 (267)
Q Consensus 79 ~~C~~Cg~----------~f~~y~C~~C~ 97 (267)
..||+||. +.|.+||+.|+
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~ 63 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCS 63 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTC
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcc
Confidence 46777777 34555666664
No 201
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=25.69 E-value=22 Score=18.68 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=11.8
Q ss_pred CCCCCCCCccccchhH
Q 024483 189 KYCCPICSKSVIDMSR 204 (267)
Q Consensus 189 ~~~CPiCrks~~dm~~ 204 (267)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGA 18 (30)
Confidence 4789999998875443
No 202
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.16 E-value=40 Score=18.63 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=13.1
Q ss_pred CCCCCCCCCccccchhH
Q 024483 188 DKYCCPICSKSVIDMSR 204 (267)
Q Consensus 188 ~~~~CPiCrks~~dm~~ 204 (267)
..|.|++|.+.+...+.
T Consensus 8 k~~~C~~C~k~f~~~~~ 24 (36)
T 2elt_A 8 KPYKCPQCSYASAIKAN 24 (36)
T ss_dssp CSEECSSSSCEESSHHH
T ss_pred CCCCCCCCCcccCCHHH
Confidence 45899999999875443
Done!