Query 024484
Match_columns 267
No_of_seqs 253 out of 1412
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:00:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 5.9E-36 2E-40 236.1 9.3 104 11-115 1-104 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.8E-35 6.3E-40 234.7 7.8 101 14-115 1-101 (107)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 3.1E-35 1.1E-39 239.9 8.5 111 4-115 17-127 (128)
4 3osg_A MYB21; transcription-DN 100.0 8E-35 2.7E-39 237.4 9.6 106 8-115 5-110 (126)
5 3zqc_A MYB3; transcription-DNA 100.0 1E-34 3.6E-39 238.0 9.9 102 13-115 1-102 (131)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 4.7E-33 1.6E-37 234.6 7.3 108 7-115 51-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 4.1E-31 1.4E-35 222.7 5.9 104 11-115 3-107 (159)
8 2dim_A Cell division cycle 5-l 99.9 6.8E-23 2.3E-27 150.8 1.8 67 8-75 3-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 1E-21 3.4E-26 159.9 6.0 74 40-114 1-75 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 1E-19 3.5E-24 162.1 7.5 106 9-115 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.8 6.2E-20 2.1E-24 136.7 4.9 60 53-113 9-68 (73)
12 2din_A Cell division cycle 5-l 99.7 2.4E-18 8.2E-23 125.0 6.5 57 59-116 1-57 (66)
13 2juh_A Telomere binding protei 99.7 9E-19 3.1E-23 142.0 2.6 82 9-91 12-103 (121)
14 2cu7_A KIAA1915 protein; nucle 99.7 1.1E-17 3.8E-22 123.6 6.7 55 61-115 3-57 (72)
15 2d9a_A B-MYB, MYB-related prot 99.7 3.2E-18 1.1E-22 122.1 3.1 57 9-66 3-59 (60)
16 1gvd_A MYB proto-oncogene prot 99.7 3.7E-18 1.3E-22 118.4 2.9 52 12-64 1-52 (52)
17 2roh_A RTBP1, telomere binding 99.7 9E-18 3.1E-22 136.3 4.1 78 10-88 27-114 (122)
18 2d9a_A B-MYB, MYB-related prot 99.7 2.4E-17 8.2E-22 117.5 5.8 54 62-115 3-57 (60)
19 1guu_A C-MYB, MYB proto-oncoge 99.7 4.4E-17 1.5E-21 112.9 6.0 50 65-114 1-51 (52)
20 1ity_A TRF1; helix-turn-helix, 99.7 1.1E-17 3.7E-22 122.7 2.5 62 9-71 5-68 (69)
21 1guu_A C-MYB, MYB proto-oncoge 99.7 9.1E-18 3.1E-22 116.3 1.9 52 12-64 1-52 (52)
22 1gvd_A MYB proto-oncogene prot 99.7 9.6E-17 3.3E-21 111.2 5.8 50 65-114 1-51 (52)
23 1w0t_A Telomeric repeat bindin 99.7 1.4E-16 4.9E-21 110.9 6.1 49 66-114 1-52 (53)
24 1x41_A Transcriptional adaptor 99.6 2.1E-16 7.1E-21 112.9 5.9 53 62-114 3-56 (60)
25 1ity_A TRF1; helix-turn-helix, 99.6 4.2E-16 1.4E-20 114.1 7.2 56 60-115 3-61 (69)
26 2dim_A Cell division cycle 5-l 99.6 4E-16 1.4E-20 114.5 5.9 54 62-115 4-58 (70)
27 3sjm_A Telomeric repeat-bindin 99.6 8.7E-17 3E-21 116.7 1.7 55 12-66 9-64 (64)
28 1x41_A Transcriptional adaptor 99.6 1.6E-16 5.5E-21 113.5 2.4 55 9-64 3-57 (60)
29 2ltp_A Nuclear receptor corepr 99.4 8.5E-17 2.9E-21 123.8 0.0 58 59-116 8-65 (89)
30 3sjm_A Telomeric repeat-bindin 99.6 1.8E-15 6.2E-20 109.7 6.5 51 65-115 9-62 (64)
31 2yum_A ZZZ3 protein, zinc fing 99.6 1.1E-15 3.6E-20 113.6 5.4 54 62-115 3-62 (75)
32 2elk_A SPCC24B10.08C protein; 99.6 2.2E-15 7.4E-20 107.0 6.2 50 63-112 5-56 (58)
33 2din_A Cell division cycle 5-l 99.6 1.7E-16 5.7E-21 115.3 -0.4 60 7-69 2-61 (66)
34 1w0t_A Telomeric repeat bindin 99.6 4.5E-16 1.5E-20 108.4 1.5 49 13-62 1-51 (53)
35 2yum_A ZZZ3 protein, zinc fing 99.6 4.1E-16 1.4E-20 115.8 1.0 61 8-69 2-67 (75)
36 2elk_A SPCC24B10.08C protein; 99.5 1.1E-15 3.6E-20 108.7 1.9 52 10-61 5-56 (58)
37 2cqr_A RSGI RUH-043, DNAJ homo 99.5 1.6E-14 5.6E-19 107.3 6.1 51 63-113 14-68 (73)
38 2cu7_A KIAA1915 protein; nucle 99.5 3.1E-15 1.1E-19 110.4 1.1 58 8-67 3-60 (72)
39 2llk_A Cyclin-D-binding MYB-li 99.4 2.6E-14 8.8E-19 106.3 2.5 60 3-66 12-71 (73)
40 2aje_A Telomere repeat-binding 99.4 3.7E-14 1.3E-18 112.3 3.1 80 8-87 7-95 (105)
41 2yus_A SWI/SNF-related matrix- 99.4 8.1E-14 2.8E-18 105.0 4.7 48 64-111 15-62 (79)
42 3zqc_A MYB3; transcription-DNA 99.4 2.6E-14 9.1E-19 116.5 1.4 84 7-96 47-130 (131)
43 1x58_A Hypothetical protein 49 99.4 2.5E-13 8.6E-18 97.6 6.2 50 65-114 6-58 (62)
44 2ckx_A NGTRF1, telomere bindin 99.4 1.1E-13 3.7E-18 105.3 4.1 69 15-84 1-79 (83)
45 2yus_A SWI/SNF-related matrix- 99.4 7.4E-14 2.5E-18 105.2 2.7 53 6-60 10-62 (79)
46 1gv2_A C-MYB, MYB proto-oncoge 99.4 2.7E-13 9.2E-18 106.2 5.9 51 64-114 1-52 (105)
47 2ckx_A NGTRF1, telomere bindin 99.4 4.5E-13 1.5E-17 101.9 6.7 48 68-115 1-53 (83)
48 3osg_A MYB21; transcription-DN 99.4 3.9E-13 1.3E-17 109.0 6.7 54 62-115 6-59 (126)
49 1ign_A Protein (RAP1); RAP1,ye 99.4 3.1E-13 1.1E-17 120.4 5.5 53 63-115 4-62 (246)
50 2juh_A Telomere binding protei 99.4 5.7E-13 2E-17 107.9 6.3 56 60-115 10-70 (121)
51 2aje_A Telomere repeat-binding 99.4 1E-12 3.6E-17 104.0 6.9 54 62-115 8-66 (105)
52 2ltp_A Nuclear receptor corepr 99.0 1.1E-13 3.9E-18 106.3 0.0 54 8-63 10-63 (89)
53 2cjj_A Radialis; plant develop 99.3 1.6E-12 5.6E-17 100.8 6.4 50 66-115 7-60 (93)
54 2k9n_A MYB24; R2R3 domain, DNA 99.3 1.6E-12 5.4E-17 102.5 5.5 48 67-114 1-49 (107)
55 2cqr_A RSGI RUH-043, DNAJ homo 99.3 3.9E-13 1.3E-17 99.9 1.3 57 5-62 9-68 (73)
56 2roh_A RTBP1, telomere binding 99.3 4.8E-12 1.6E-16 102.6 6.6 54 62-115 26-84 (122)
57 3hm5_A DNA methyltransferase 1 99.1 5.7E-11 2E-15 92.0 6.1 64 50-117 17-85 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.1 2.1E-10 7.3E-15 81.9 6.5 48 66-113 11-58 (61)
59 2cqq_A RSGI RUH-037, DNAJ homo 99.0 6.4E-10 2.2E-14 82.3 5.8 50 64-114 5-58 (72)
60 2cjj_A Radialis; plant develop 99.0 8.5E-11 2.9E-15 91.1 0.7 48 13-61 7-57 (93)
61 2iw5_B Protein corest, REST co 98.8 3.6E-09 1.2E-13 93.6 6.1 50 66-115 132-181 (235)
62 2eqr_A N-COR1, N-COR, nuclear 98.7 3.8E-09 1.3E-13 75.4 2.4 51 8-60 6-56 (61)
63 1wgx_A KIAA1903 protein; MYB D 98.7 2.5E-08 8.6E-13 73.9 5.8 49 66-114 7-59 (73)
64 1x58_A Hypothetical protein 49 98.7 5.1E-09 1.7E-13 75.2 1.8 49 12-62 6-57 (62)
65 1fex_A TRF2-interacting telome 98.6 5.1E-08 1.7E-12 69.3 5.2 47 67-113 2-58 (59)
66 2xag_B REST corepressor 1; ami 98.5 6.2E-08 2.1E-12 94.2 5.4 47 68-114 381-427 (482)
67 2cqq_A RSGI RUH-037, DNAJ homo 98.5 1.5E-08 5E-13 74.9 0.7 50 11-62 5-57 (72)
68 1fex_A TRF2-interacting telome 98.4 5E-08 1.7E-12 69.4 0.9 48 14-62 2-58 (59)
69 1ug2_A 2610100B20RIK gene prod 98.4 4.3E-07 1.5E-11 69.6 5.3 48 68-115 34-84 (95)
70 2iw5_B Protein corest, REST co 98.3 2E-07 7E-12 82.4 2.3 51 10-62 129-179 (235)
71 2lr8_A CAsp8-associated protei 97.6 9.2E-08 3.2E-12 69.6 0.0 44 69-113 16-62 (70)
72 1wgx_A KIAA1903 protein; MYB D 98.3 1.8E-07 6.1E-12 69.3 1.2 48 14-62 8-58 (73)
73 4eef_G F-HB80.4, designed hema 98.2 3.7E-07 1.3E-11 67.4 1.8 43 67-109 20-66 (74)
74 2yqk_A Arginine-glutamic acid 98.2 3.7E-06 1.3E-10 60.2 6.6 49 62-110 4-53 (63)
75 4iej_A DNA methyltransferase 1 98.2 2.9E-06 1E-10 65.4 6.2 59 55-117 22-85 (93)
76 1ofc_X ISWI protein; nuclear p 98.1 7E-06 2.4E-10 75.7 7.9 102 15-117 111-278 (304)
77 4eef_G F-HB80.4, designed hema 97.8 4.7E-06 1.6E-10 61.6 1.2 44 14-58 20-66 (74)
78 4a69_C Nuclear receptor corepr 97.7 5.2E-05 1.8E-09 58.4 5.8 45 67-111 43-87 (94)
79 2crg_A Metastasis associated p 97.7 8.7E-05 3E-09 54.1 6.3 43 67-109 8-51 (70)
80 2yqk_A Arginine-glutamic acid 97.7 1.9E-05 6.4E-10 56.5 2.6 49 9-59 4-53 (63)
81 2xag_B REST corepressor 1; ami 97.4 4.1E-05 1.4E-09 74.5 2.1 47 12-60 378-424 (482)
82 2ebi_A DNA binding protein GT- 97.4 0.00017 6E-09 54.0 4.7 49 67-115 4-66 (86)
83 3hm5_A DNA methyltransferase 1 97.2 8.9E-05 3E-09 57.2 1.3 50 12-62 28-81 (93)
84 2y9y_A Imitation switch protei 97.0 0.0019 6.6E-08 60.9 8.2 101 15-115 124-292 (374)
85 4a69_C Nuclear receptor corepr 96.9 0.00027 9.2E-09 54.4 1.9 43 14-58 43-85 (94)
86 2crg_A Metastasis associated p 96.9 0.00031 1.1E-08 51.2 1.9 45 13-59 7-52 (70)
87 4b4c_A Chromodomain-helicase-D 96.5 0.011 3.9E-07 50.6 9.4 48 68-115 135-197 (211)
88 2lr8_A CAsp8-associated protei 95.5 0.0004 1.4E-08 50.4 0.0 47 14-62 14-62 (70)
89 1ug2_A 2610100B20RIK gene prod 96.4 0.00086 2.9E-08 51.3 1.4 45 15-60 34-80 (95)
90 2ebi_A DNA binding protein GT- 96.4 0.00028 9.5E-09 52.9 -1.4 49 13-61 3-63 (86)
91 1irz_A ARR10-B; helix-turn-hel 94.4 0.093 3.2E-06 37.5 5.9 47 65-111 5-56 (64)
92 4iej_A DNA methyltransferase 1 94.3 0.013 4.5E-07 45.0 1.4 49 12-61 28-80 (93)
93 1ofc_X ISWI protein; nuclear p 94.2 0.08 2.7E-06 48.6 6.5 48 67-114 110-158 (304)
94 4b4c_A Chromodomain-helicase-D 93.4 0.12 4E-06 44.1 5.8 51 65-115 5-60 (211)
95 2xb0_X Chromo domain-containin 87.9 0.36 1.2E-05 43.6 3.7 29 15-43 169-197 (270)
96 2xb0_X Chromo domain-containin 83.1 2.4 8.4E-05 38.1 6.7 49 67-115 3-56 (270)
97 1irz_A ARR10-B; helix-turn-hel 78.5 0.91 3.1E-05 32.3 1.8 48 11-59 4-55 (64)
98 2o8x_A Probable RNA polymerase 76.5 3.4 0.00012 27.8 4.3 42 73-115 18-59 (70)
99 1ku3_A Sigma factor SIGA; heli 72.8 4.8 0.00017 27.8 4.4 42 73-115 13-58 (73)
100 2p7v_B Sigma-70, RNA polymeras 71.2 4.7 0.00016 27.5 4.0 42 73-115 8-53 (68)
101 2li6_A SWI/SNF chromatin-remod 67.2 4.1 0.00014 31.7 3.2 40 77-116 53-100 (116)
102 3hug_A RNA polymerase sigma fa 64.7 14 0.00048 26.6 5.6 42 73-115 40-81 (92)
103 2lm1_A Lysine-specific demethy 63.7 9.9 0.00034 28.8 4.8 39 77-115 48-98 (107)
104 2jrz_A Histone demethylase jar 63.2 8.5 0.00029 29.9 4.4 39 77-115 44-94 (117)
105 2y9y_A Imitation switch protei 61.7 14 0.00047 34.7 6.2 44 68-112 124-169 (374)
106 1kkx_A Transcription regulator 61.7 6.5 0.00022 31.0 3.5 39 77-115 52-98 (123)
107 2eqy_A RBP2 like, jumonji, at 59.3 11 0.00039 29.4 4.5 39 77-115 46-96 (122)
108 1x3u_A Transcriptional regulat 58.0 20 0.0007 24.5 5.3 42 70-114 17-58 (79)
109 2cxy_A BAF250B subunit, HBAF25 57.9 13 0.00043 29.2 4.6 39 77-115 55-105 (125)
110 1or7_A Sigma-24, RNA polymeras 55.4 17 0.00058 28.9 5.1 31 83-114 153-183 (194)
111 1tty_A Sigma-A, RNA polymerase 54.7 16 0.00055 26.1 4.4 41 73-114 21-65 (87)
112 3c57_A Two component transcrip 53.0 21 0.0007 26.1 4.8 43 69-114 27-69 (95)
113 2q1z_A RPOE, ECF SIGE; ECF sig 52.6 11 0.00038 29.8 3.5 31 84-115 149-179 (184)
114 1je8_A Nitrate/nitrite respons 52.2 21 0.00071 25.3 4.6 43 69-114 21-63 (82)
115 3ulq_B Transcriptional regulat 50.6 29 0.001 25.2 5.3 47 66-115 26-72 (90)
116 2yqf_A Ankyrin-1; death domain 50.3 21 0.00072 27.1 4.7 36 70-106 13-48 (111)
117 1fse_A GERE; helix-turn-helix 48.9 27 0.00091 23.4 4.6 44 68-114 10-53 (74)
118 1c20_A DEAD ringer protein; DN 48.3 23 0.00077 27.8 4.6 39 77-115 56-107 (128)
119 1xsv_A Hypothetical UPF0122 pr 48.2 28 0.00097 26.4 5.1 42 73-115 28-69 (113)
120 2kk0_A AT-rich interactive dom 47.9 21 0.00072 28.7 4.5 39 77-115 68-119 (145)
121 2jxj_A Histone demethylase jar 47.7 8.5 0.00029 28.6 1.9 39 77-115 40-90 (96)
122 2rq5_A Protein jumonji; develo 46.8 20 0.0007 28.1 4.1 78 12-115 5-97 (121)
123 2jpc_A SSRB; DNA binding prote 46.1 33 0.0011 22.2 4.6 38 75-114 3-40 (61)
124 3mzy_A RNA polymerase sigma-H 45.9 38 0.0013 25.7 5.6 30 84-114 122-151 (164)
125 1rp3_A RNA polymerase sigma fa 45.2 29 0.00098 28.3 5.1 39 75-114 192-230 (239)
126 2rq5_A Protein jumonji; develo 44.3 6.5 0.00022 31.1 0.8 58 23-83 45-113 (121)
127 2li6_A SWI/SNF chromatin-remod 43.7 3.8 0.00013 31.9 -0.6 39 24-63 53-98 (116)
128 1ig6_A MRF-2, modulator recogn 43.1 11 0.00039 28.5 2.0 39 77-115 37-88 (107)
129 2of5_H Leucine-rich repeat and 42.9 23 0.0008 27.3 3.9 31 75-106 13-43 (118)
130 2rnj_A Response regulator prot 42.8 26 0.00089 25.1 3.9 42 70-114 30-71 (91)
131 2of5_A Death domain-containing 40.8 28 0.00095 26.9 4.0 29 77-106 26-54 (114)
132 2o71_A Death domain-containing 40.2 29 0.00099 26.9 4.0 29 77-106 26-54 (115)
133 3i4p_A Transcriptional regulat 40.0 30 0.001 27.5 4.3 42 73-115 3-45 (162)
134 1wxp_A THO complex subunit 1; 37.3 36 0.0012 25.7 4.1 31 75-106 18-48 (110)
135 2jrz_A Histone demethylase jar 37.3 6.2 0.00021 30.7 -0.3 40 24-63 44-93 (117)
136 1s7o_A Hypothetical UPF0122 pr 35.2 50 0.0017 25.1 4.6 41 73-114 25-65 (113)
137 1c20_A DEAD ringer protein; DN 34.8 6.5 0.00022 31.0 -0.6 40 24-63 56-106 (128)
138 3cz6_A DNA-binding protein RAP 34.6 25 0.00085 29.4 2.9 24 10-33 110-141 (168)
139 3cz6_A DNA-binding protein RAP 33.6 33 0.0011 28.7 3.4 24 63-86 110-141 (168)
140 2k27_A Paired box protein PAX- 33.5 1.6E+02 0.0054 22.8 7.6 77 15-96 24-111 (159)
141 1ntc_A Protein (nitrogen regul 33.5 66 0.0023 23.2 4.9 35 72-107 50-84 (91)
142 1p4w_A RCSB; solution structur 33.3 75 0.0026 23.5 5.3 45 67-114 32-76 (99)
143 3e7l_A Transcriptional regulat 33.1 57 0.0019 21.8 4.2 34 72-106 18-51 (63)
144 2dbb_A Putative HTH-type trans 31.0 85 0.0029 24.2 5.5 42 73-115 9-51 (151)
145 3clo_A Transcriptional regulat 27.3 63 0.0022 27.5 4.5 43 69-114 197-239 (258)
146 1fad_A Protein (FADD protein); 26.8 37 0.0013 24.9 2.5 31 75-106 14-44 (99)
147 1k78_A Paired box protein PAX5 26.4 1.4E+02 0.0048 22.7 6.0 38 67-106 30-67 (149)
148 2e1c_A Putative HTH-type trans 26.3 78 0.0027 25.5 4.6 43 72-115 26-69 (171)
149 2kk0_A AT-rich interactive dom 26.0 25 0.00087 28.2 1.5 40 24-63 68-118 (145)
150 1tc3_C Protein (TC3 transposas 25.9 1.1E+02 0.0036 18.0 5.1 38 69-108 5-42 (51)
151 2lfw_A PHYR sigma-like domain; 25.0 36 0.0012 26.6 2.2 41 73-114 96-136 (157)
152 2cyy_A Putative HTH-type trans 24.6 1E+02 0.0034 23.8 4.9 42 73-115 7-49 (151)
153 3t72_q RNA polymerase sigma fa 24.2 1.1E+02 0.0036 22.8 4.7 41 74-115 23-67 (99)
154 1k78_A Paired box protein PAX5 22.9 1.8E+02 0.006 22.1 6.0 77 15-96 31-118 (149)
155 1l0o_C Sigma factor; bergerat 22.5 18 0.00062 29.5 0.0 36 78-114 206-241 (243)
156 1qgp_A Protein (double strande 21.3 1.1E+02 0.0038 21.5 4.0 42 71-113 12-57 (77)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=5.9e-36 Score=236.09 Aligned_cols=104 Identities=46% Similarity=0.878 Sum_probs=99.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCCCCCCCCCHHHHHHHHHHHHhhCCchh
Q 024484 11 GLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWS 90 (267)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ikk~~WT~EED~~Li~l~~~~G~kWs 90 (267)
++++|+||+|||++|+.+|++||..+|..||+.+++ |+++||++||.++|+|.+++++||+|||++|++++.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 478999999999999999999998899999999987 9999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 91 AIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 91 ~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
.||++|||||+++||+||+.+++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999876
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1.8e-35 Score=234.71 Aligned_cols=101 Identities=29% Similarity=0.530 Sum_probs=98.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCCCCCCCCCHHHHHHHHHHHHhhCCchhHHh
Q 024484 14 KGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIA 93 (267)
Q Consensus 14 kg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ikk~~WT~EED~~Li~l~~~~G~kWs~IA 93 (267)
||+||+|||++|+.+|..||..+|..||..+++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999998899999999997 9999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHhHHH
Q 024484 94 GRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 94 ~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
++|||||+++||+||+.++++.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHhhH
Confidence 9999999999999999999876
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=3.1e-35 Score=239.94 Aligned_cols=111 Identities=43% Similarity=0.818 Sum_probs=102.9
Q ss_pred CcccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCCCCCCCCCHHHHHHHHHHHH
Q 024484 4 APCCEKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHD 83 (267)
Q Consensus 4 ~~~~~k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ikk~~WT~EED~~Li~l~~ 83 (267)
+....+|++++|+||+|||++|+.+|+.||..+|..||..+++ |+++||++||.++|+|.+++++||+|||++|+++++
T Consensus 17 w~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~ 95 (128)
T 1h8a_C 17 WQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK 95 (128)
T ss_dssp -----CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHH
T ss_pred HHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHH
Confidence 3344678999999999999999999999998899999999987 999999999999999999999999999999999999
Q ss_pred hhCCchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 84 MLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 84 ~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
+||++|+.||++|||||+++||+||+.+++++
T Consensus 96 ~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 96 RLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999876
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=8e-35 Score=237.39 Aligned_cols=106 Identities=36% Similarity=0.653 Sum_probs=101.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCCCCCCCCCHHHHHHHHHHHHhhCC
Q 024484 8 EKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGN 87 (267)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ikk~~WT~EED~~Li~l~~~~G~ 87 (267)
.+.+++||+||+|||++|+.+|.+||. +|..||+.+++ |+++||++||.++|+|.+++++||+|||++|++++++||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999995 99999999987 9999999999999999999999999999999999999999
Q ss_pred chhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 88 RWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 88 kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
+|+.||++|||||+++||+||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998875
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=1e-34 Score=238.01 Aligned_cols=102 Identities=40% Similarity=0.735 Sum_probs=99.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCCCCCCCCCHHHHHHHHHHHHhhCCchhHH
Q 024484 13 KKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAI 92 (267)
Q Consensus 13 kkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ikk~~WT~EED~~Li~l~~~~G~kWs~I 92 (267)
.||+||+|||++|+.+|..||..+|..||..+++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 3799999999999999999999999999999987 999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHhHHH
Q 024484 93 AGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 93 A~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
|++|||||+++||+||+.+|+++
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGG
T ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999987
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=4.7e-33 Score=234.60 Aligned_cols=108 Identities=44% Similarity=0.832 Sum_probs=103.5
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCCCCCCCCCHHHHHHHHHHHHhhC
Q 024484 7 CEKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLG 86 (267)
Q Consensus 7 ~~k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ikk~~WT~EED~~Li~l~~~~G 86 (267)
...|++++|+||+|||++|+.+|+.||..+|..||+.+++ |+++||+.||.++|+|.+++++||+|||.+|++++++||
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 3568899999999999999999999998789999999987 999999999999999999999999999999999999999
Q ss_pred CchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 87 NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 87 ~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
++|+.||++|||||+++|||||+.+++++
T Consensus 130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999876
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=4.1e-31 Score=222.69 Aligned_cols=104 Identities=34% Similarity=0.708 Sum_probs=61.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCCCCCCCCCHHHHHHHHHHHHhhCC-ch
Q 024484 11 GLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGN-RW 89 (267)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ikk~~WT~EED~~Li~l~~~~G~-kW 89 (267)
++++++||+|||++|+++|.+||..+|..||+.+++ |+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 378899999999999999999998899999999987 9999999999999999999999999999999999999996 69
Q ss_pred hHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 90 SAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 90 s~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
..||.+|||||+.||++||+.+|.+.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 99999999999999999999988643
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.8e-23 Score=150.84 Aligned_cols=67 Identities=28% Similarity=0.580 Sum_probs=64.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCCCCCCCCCHHHH
Q 024484 8 EKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEE 75 (267)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ikk~~WT~EED 75 (267)
..+++++|+||+|||++|+.+|.+||..+|..||..+++ |+++|||+||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 457899999999999999999999998899999999997 9999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.84 E-value=1e-21 Score=159.90 Aligned_cols=74 Identities=32% Similarity=0.705 Sum_probs=50.8
Q ss_pred cccccCcccCcccccccccccccCCCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 40 LPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGN-RWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 40 Ia~~~~~~Rt~kqCr~Rw~n~L~p~ikk~~WT~EED~~Li~l~~~~G~-kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
||+.+++ |+++||+.||.++|+|.+++++||+|||++|+++|++||. +|..||.+|||||+.||++||+.+|.+
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCS
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccc
Confidence 6788887 9999999999999999999999999999999999999996 699999999999999999999998864
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.79 E-value=1e-19 Score=162.07 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=92.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCC-----CccccccccCcccCcccccccccccccCCCC-----------------
Q 024484 9 KMGLKKGPWTPEEDRILIVHIKKHGHP-----NWRALPKQAGLLRCGKSCRLRWINYLRPDIK----------------- 66 (267)
Q Consensus 9 k~~lkkg~WT~EED~~L~~~V~~~G~~-----nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ik----------------- 66 (267)
...+.|++||+|||++|+++|+++|.. .|..||+.|++ ||+.|||.||+.+|++.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 356789999999999999999999854 29999999998 9999999999999999997
Q ss_pred ------------CCCCCHHHHHHHHHHHHh-h--------------------------------CC--------------
Q 024484 67 ------------RGNFSKEEEETIINLHDM-L--------------------------------GN-------------- 87 (267)
Q Consensus 67 ------------k~~WT~EED~~Li~l~~~-~--------------------------------G~-------------- 87 (267)
+..||.+||-.|...+++ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 899999999999998877 1 11
Q ss_pred -----------chhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 88 -----------RWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 88 -----------kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
.|.+||+.+|+||.+++|+||+.+|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999999876
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.79 E-value=6.2e-20 Score=136.70 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=47.8
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhH
Q 024484 53 CRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLK 113 (267)
Q Consensus 53 Cr~Rw~n~L~p~ikk~~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lk 113 (267)
.--||.++|+|++++++||+|||++|++++++||++|+.||+.| |||++|||+||+.+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 9999999999986543
No 12
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=125.05 Aligned_cols=57 Identities=28% Similarity=0.453 Sum_probs=54.5
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHHHH
Q 024484 59 NYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116 (267)
Q Consensus 59 n~L~p~ikk~~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk~~ 116 (267)
.+|+|.+++++||+|||++|++++++||++|..||+ |+|||++|||+||+.+|++.+
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHh
Confidence 379999999999999999999999999999999999 889999999999999999873
No 13
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.72 E-value=9e-19 Score=142.00 Aligned_cols=82 Identities=16% Similarity=0.342 Sum_probs=76.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc----CcccCccccccccccccc-----CCCCCC-CCCHHHHHHH
Q 024484 9 KMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQA----GLLRCGKSCRLRWINYLR-----PDIKRG-NFSKEEEETI 78 (267)
Q Consensus 9 k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~----~~~Rt~kqCr~Rw~n~L~-----p~ikk~-~WT~EED~~L 78 (267)
++..++++||+|||+.|+.+|++||.++|..|++.+ ++ ||+.+|++||.++|+ |.++++ +|+++|+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 467889999999999999999999988999999985 44 999999999999998 999999 9999999999
Q ss_pred HHHHHhhCCchhH
Q 024484 79 INLHDMLGNRWSA 91 (267)
Q Consensus 79 i~l~~~~G~kWs~ 91 (267)
++++..+||+|.+
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999976
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.71 E-value=1.1e-17 Score=123.64 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=53.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 61 LRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 61 L~p~ikk~~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
++|.+++++||+|||++|++++++||++|..||++|||||++|||+||+.++++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999887
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=3.2e-18 Score=122.10 Aligned_cols=57 Identities=26% Similarity=0.521 Sum_probs=54.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCCCC
Q 024484 9 KMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIK 66 (267)
Q Consensus 9 k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ik 66 (267)
.|++++++||+|||++|+++|.+||..+|..||+.+++ |++.||+.||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 47899999999999999999999998899999999998 9999999999999999875
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.70 E-value=3.7e-18 Score=118.42 Aligned_cols=52 Identities=48% Similarity=0.874 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCC
Q 024484 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPD 64 (267)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ 64 (267)
|+||+||+|||++|+++|.+||..+|..||+.+++ |+++||+.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 67999999999999999999998799999999987 99999999999999984
No 17
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.69 E-value=9e-18 Score=136.29 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=72.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc----CcccCcccccccccccc-----cCCCCCCCCCHHH-HHHHH
Q 024484 10 MGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQA----GLLRCGKSCRLRWINYL-----RPDIKRGNFSKEE-EETII 79 (267)
Q Consensus 10 ~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~----~~~Rt~kqCr~Rw~n~L-----~p~ikk~~WT~EE-D~~Li 79 (267)
...++++||+|||+.|+++|++||.++|..|++.. .+ ||+.||++||.|++ +|.++++.|+++| +.+|+
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 45678999999999999999999988999999874 44 99999999999999 8999999999999 89999
Q ss_pred HHHHhhCCc
Q 024484 80 NLHDMLGNR 88 (267)
Q Consensus 80 ~l~~~~G~k 88 (267)
++|..||++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999985
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.4e-17 Score=117.51 Aligned_cols=54 Identities=24% Similarity=0.476 Sum_probs=51.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 62 RPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 62 ~p~ikk~~WT~EED~~Li~l~~~~G-~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
+|.+++++||+|||++|+++|.+|| ++|+.||++|+|||+.|||+||+.+|++.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 5789999999999999999999999 69999999999999999999999998765
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.68 E-value=4.4e-17 Score=112.85 Aligned_cols=50 Identities=30% Similarity=0.628 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 65 IKRGNFSKEEEETIINLHDMLGN-RWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 65 ikk~~WT~EED~~Li~l~~~~G~-kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
+++++||+|||++|+++|++||. +|..||++|||||+.||++||+.+|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999998 999999999999999999999999864
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.67 E-value=1.1e-17 Score=122.66 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=57.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccC--cccCcccccccccccccCCCCCCCCC
Q 024484 9 KMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAG--LLRCGKSCRLRWINYLRPDIKRGNFS 71 (267)
Q Consensus 9 k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~--~~Rt~kqCr~Rw~n~L~p~ikk~~WT 71 (267)
++..++++||+|||++|+.+|++||.++|..||..++ + |++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 5678899999999999999999999889999999998 6 999999999999999999998764
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.67 E-value=9.1e-18 Score=116.32 Aligned_cols=52 Identities=31% Similarity=0.653 Sum_probs=48.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCC
Q 024484 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPD 64 (267)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ 64 (267)
+++|+||+|||++|+++|..||..+|..||+.+++ |++.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57899999999999999999997799999999987 99999999999999985
No 22
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.66 E-value=9.6e-17 Score=111.22 Aligned_cols=50 Identities=38% Similarity=0.792 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 65 IKRGNFSKEEEETIINLHDMLGN-RWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 65 ikk~~WT~EED~~Li~l~~~~G~-kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
+++++||+|||++|+++|.+||. +|..||++|+|||+.|||+||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999998864
No 23
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.65 E-value=1.4e-16 Score=110.91 Aligned_cols=49 Identities=29% Similarity=0.384 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCC--CCCHHHHHHHHHHHhHH
Q 024484 66 KRGNFSKEEEETIINLHDMLG-NRWSAIAGRLP--GRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 66 kk~~WT~EED~~Li~l~~~~G-~kWs~IA~~lp--gRT~~q~KnRw~~~lkk 114 (267)
++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||++++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 579999999999999999999 79999999999 99999999999999875
No 24
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=2.1e-16 Score=112.95 Aligned_cols=53 Identities=13% Similarity=0.260 Sum_probs=49.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 62 RPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 62 ~p~ikk~~WT~EED~~Li~l~~~~G-~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
.|.+.+++||+|||++|+++|++|| ++|.+||++|||||+.|||+||+.+|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 8999999999999999999999998854
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.63 E-value=4.2e-16 Score=114.13 Aligned_cols=56 Identities=27% Similarity=0.309 Sum_probs=52.2
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCC--CCCHHHHHHHHHHHhHHH
Q 024484 60 YLRPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAGRLP--GRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 60 ~L~p~ikk~~WT~EED~~Li~l~~~~G-~kWs~IA~~lp--gRT~~q~KnRw~~~lkk~ 115 (267)
...|..++++||+|||++|+++|++|| ++|+.||.+|+ |||+.|||+||+++|++.
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 61 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCC
Confidence 356778899999999999999999999 79999999999 999999999999999876
No 26
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=4e-16 Score=114.50 Aligned_cols=54 Identities=26% Similarity=0.394 Sum_probs=51.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 62 RPDIKRGNFSKEEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 62 ~p~ikk~~WT~EED~~Li~l~~~~G-~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
.|.+++++||+|||++|+++|++|| ++|..||.+|+|||+.|||+||+.+|++.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~ 58 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPS 58 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCc
Confidence 4788999999999999999999999 89999999999999999999999999765
No 27
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.61 E-value=8.7e-17 Score=116.68 Aligned_cols=55 Identities=29% Similarity=0.460 Sum_probs=49.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccC-cccCcccccccccccccCCCC
Q 024484 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAG-LLRCGKSCRLRWINYLRPDIK 66 (267)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~-~~Rt~kqCr~Rw~n~L~p~ik 66 (267)
.+|++||+|||++|+++|++||..+|..||+.++ .+|++.||++||.|+++|.++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 5789999999999999999999889999999865 239999999999999998764
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=1.6e-16 Score=113.52 Aligned_cols=55 Identities=18% Similarity=0.449 Sum_probs=51.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCC
Q 024484 9 KMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPD 64 (267)
Q Consensus 9 k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ 64 (267)
.+.+.+++||+|||++|+++|++||..+|..||+++++ |+++||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence 46789999999999999999999998899999999998 99999999999999874
No 29
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.38 E-value=8.5e-17 Score=123.81 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=54.6
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHHHH
Q 024484 59 NYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116 (267)
Q Consensus 59 n~L~p~ikk~~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk~~ 116 (267)
..++|.+++++||.|||++|+++|.+||++|+.||.+|||||++|||+||+.++++..
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 3578899999999999999999999999999999999999999999999999998764
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.59 E-value=1.8e-15 Score=109.70 Aligned_cols=51 Identities=29% Similarity=0.462 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCC--CCCHHHHHHHHHHHhHHH
Q 024484 65 IKRGNFSKEEEETIINLHDMLG-NRWSAIAGRLP--GRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 65 ikk~~WT~EED~~Li~l~~~~G-~kWs~IA~~lp--gRT~~q~KnRw~~~lkk~ 115 (267)
.++++||+|||++|+++|++|| ++|+.||+.+| |||+.|||+||++++|..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 5789999999999999999999 58999999865 999999999999998754
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=113.59 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=51.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhC------CchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 62 RPDIKRGNFSKEEEETIINLHDMLG------NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 62 ~p~ikk~~WT~EED~~Li~l~~~~G------~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
+|.+++++||+|||++|++++.+|| ++|..||++|+|||+.||++||+.+|++.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999 79999999999999999999999998775
No 32
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.58 E-value=2.2e-15 Score=107.05 Aligned_cols=50 Identities=24% Similarity=0.411 Sum_probs=46.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCC-CCCHHHHHHHHHHHh
Q 024484 63 PDIKRGNFSKEEEETIINLHDMLG-NRWSAIAGRLP-GRTDNEIKNVWHTHL 112 (267)
Q Consensus 63 p~ikk~~WT~EED~~Li~l~~~~G-~kWs~IA~~lp-gRT~~q~KnRw~~~l 112 (267)
..+.+++||+|||++|+++|++|| ++|.+||++|+ |||+.|||+||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999 89999999999 999999999998765
No 33
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-16 Score=115.27 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=54.3
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCCCCCCC
Q 024484 7 CEKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGN 69 (267)
Q Consensus 7 ~~k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ikk~~ 69 (267)
+..|.+++++||+|||++|+.+|+.|| .+|..||+ +++ |+++||+.||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 357899999999999999999999999 59999999 665 9999999999999999877653
No 34
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.56 E-value=4.5e-16 Score=108.40 Aligned_cols=49 Identities=27% Similarity=0.430 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccC--cccCccccccccccccc
Q 024484 13 KKGPWTPEEDRILIVHIKKHGHPNWRALPKQAG--LLRCGKSCRLRWINYLR 62 (267)
Q Consensus 13 kkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~--~~Rt~kqCr~Rw~n~L~ 62 (267)
++|+||+|||++|+.+|++||.++|..||..++ + |++.||++||.++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999999 6 999999999999875
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.1e-16 Score=115.79 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=56.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-----CCccccccccCcccCcccccccccccccCCCCCCC
Q 024484 8 EKMGLKKGPWTPEEDRILIVHIKKHGH-----PNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGN 69 (267)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~~V~~~G~-----~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ikk~~ 69 (267)
.+|++.+++||+|||++|+++|..||. .+|..||++|++ |+++||+.||++||.+.++.+.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence 378999999999999999999999996 789999999998 9999999999999998777653
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.54 E-value=1.1e-15 Score=108.67 Aligned_cols=52 Identities=21% Similarity=0.408 Sum_probs=47.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccc
Q 024484 10 MGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYL 61 (267)
Q Consensus 10 ~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L 61 (267)
..+.+++||+|||++|+++|++||..+|..||++++++|+++||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999999999999999993499999999999875
No 37
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.51 E-value=1.6e-14 Score=107.35 Aligned_cols=51 Identities=8% Similarity=0.218 Sum_probs=48.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC----CchhHHhhcCCCCCHHHHHHHHHHHhH
Q 024484 63 PDIKRGNFSKEEEETIINLHDMLG----NRWSAIAGRLPGRTDNEIKNVWHTHLK 113 (267)
Q Consensus 63 p~ikk~~WT~EED~~Li~l~~~~G----~kWs~IA~~lpgRT~~q~KnRw~~~lk 113 (267)
+.+.+++||.|||++|++++++|| ++|.+||++|||||.+||++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 567889999999999999999999 789999999999999999999998875
No 38
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.49 E-value=3.1e-15 Score=110.43 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=53.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCCCCC
Q 024484 8 EKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKR 67 (267)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ikk 67 (267)
..|.+++++||+|||++|+++|..|| .+|..||+++++ |++.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999 599999999998 99999999999999887665
No 39
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.44 E-value=2.6e-14 Score=106.30 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=47.4
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCCCC
Q 024484 3 RAPCCEKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIK 66 (267)
Q Consensus 3 R~~~~~k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ik 66 (267)
|.-....|++++|+||+|||++|+++|++|| ..|..||+.+ + |++.||+.||.. |....+
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-G-RSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-T-SCHHHHHHHHHH-CSCCCS
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-C-CCHHHHHHHHHH-HHHHcc
Confidence 5556678999999999999999999999999 5699999999 5 999999999985 444443
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.43 E-value=3.7e-14 Score=112.33 Aligned_cols=80 Identities=20% Similarity=0.307 Sum_probs=69.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccC---cccCcccccccccccc-----cCCCCCCCCCHHHHHH-H
Q 024484 8 EKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAG---LLRCGKSCRLRWINYL-----RPDIKRGNFSKEEEET-I 78 (267)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~---~~Rt~kqCr~Rw~n~L-----~p~ikk~~WT~EED~~-L 78 (267)
.+...++++||+|||+.|+.+|++||.++|..|++.++ .+||+.+|++||.+++ +|.++++.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 45678899999999999999999999889999999752 3499999999999999 6999999888877766 8
Q ss_pred HHHHHhhCC
Q 024484 79 INLHDMLGN 87 (267)
Q Consensus 79 i~l~~~~G~ 87 (267)
++|+..+|+
T Consensus 87 ~~~~~~~~~ 95 (105)
T 2aje_A 87 LNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887664
No 41
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.43 E-value=8.1e-14 Score=105.03 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=45.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHH
Q 024484 64 DIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTH 111 (267)
Q Consensus 64 ~ikk~~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~ 111 (267)
...+++||+|||++|++++++||++|.+||++|+|||+.||++||+.+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456899999999999999999999999999999999999999999755
No 42
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.42 E-value=2.6e-14 Score=116.53 Aligned_cols=84 Identities=21% Similarity=0.334 Sum_probs=62.6
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccCCCCCCCCCHHHHHHHHHHHHhhC
Q 024484 7 CEKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLG 86 (267)
Q Consensus 7 ~~k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ikk~~WT~EED~~Li~l~~~~G 86 (267)
...|++++|+||+|||++|+.+|..|| .+|..||+.+++ |++.||+.||.++|++.+..++|+.+- +......+
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~g-Rt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk 120 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPG-RTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKK 120 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTT-CCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC--
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhh
Confidence 456899999999999999999999999 789999999987 999999999999999999999988652 11122334
Q ss_pred CchhHHhhcC
Q 024484 87 NRWSAIAGRL 96 (267)
Q Consensus 87 ~kWs~IA~~l 96 (267)
.+|..|++.|
T Consensus 121 ~~~~~i~k~~ 130 (131)
T 3zqc_A 121 RKAADVPKKL 130 (131)
T ss_dssp ----------
T ss_pred hhhhhcchhc
Confidence 6688888765
No 43
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.41 E-value=2.5e-13 Score=97.59 Aligned_cols=50 Identities=24% Similarity=0.442 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCchhHHh---hcCCCCCHHHHHHHHHHHhHH
Q 024484 65 IKRGNFSKEEEETIINLHDMLGNRWSAIA---GRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 65 ikk~~WT~EED~~Li~l~~~~G~kWs~IA---~~lpgRT~~q~KnRw~~~lkk 114 (267)
-++.+||+|||+.|+++|++||.+|+.|+ .+|+|||..+||+||+++.|+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36889999999999999999999999999 578999999999999998875
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.41 E-value=1.1e-13 Score=105.34 Aligned_cols=69 Identities=19% Similarity=0.421 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cCcccCcccccccccccc-----cCCCCCC-CCCHHHHHHHHHHHHh
Q 024484 15 GPWTPEEDRILIVHIKKHGHPNWRALPKQ----AGLLRCGKSCRLRWINYL-----RPDIKRG-NFSKEEEETIINLHDM 84 (267)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~~nW~~Ia~~----~~~~Rt~kqCr~Rw~n~L-----~p~ikk~-~WT~EED~~Li~l~~~ 84 (267)
++||+|||++|+.+|++||.++|..|++. +++ ||+.+|++||.|+| +|.++++ +..++....++.|+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999998899999985 665 99999999999998 6877775 6777777889988865
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.40 E-value=7.4e-14 Score=105.25 Aligned_cols=53 Identities=19% Similarity=0.426 Sum_probs=49.7
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccccccccc
Q 024484 6 CCEKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINY 60 (267)
Q Consensus 6 ~~~k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~ 60 (267)
.+.+....+++||+|||++|+++|++|| .+|..||+++++ ||+.||+.||.++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 4566778899999999999999999999 999999999998 9999999999998
No 46
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.40 E-value=2.7e-13 Score=106.18 Aligned_cols=51 Identities=37% Similarity=0.796 Sum_probs=47.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 64 DIKRGNFSKEEEETIINLHDMLGN-RWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 64 ~ikk~~WT~EED~~Li~l~~~~G~-kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
++++++||+|||++|+++|++||. +|..||..|||||+.||+.||+.+|.+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 52 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 52 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCC
Confidence 378999999999999999999996 699999999999999999999998753
No 47
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.39 E-value=4.5e-13 Score=101.88 Aligned_cols=48 Identities=29% Similarity=0.525 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHHhhCC-chhHHhhc----CCCCCHHHHHHHHHHHhHHH
Q 024484 68 GNFSKEEEETIINLHDMLGN-RWSAIAGR----LPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 68 ~~WT~EED~~Li~l~~~~G~-kWs~IA~~----lpgRT~~q~KnRw~~~lkk~ 115 (267)
.+||.|||+.|+++|++||. +|+.|++. |+|||+++||+||++++++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999996 99999996 89999999999999999865
No 48
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.39 E-value=3.9e-13 Score=109.00 Aligned_cols=54 Identities=24% Similarity=0.492 Sum_probs=49.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 62 RPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 62 ~p~ikk~~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
.+..++++||+|||++|+++|.+||.+|..||+.|||||..||+.||+.+|.+.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 59 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPS 59 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccc
Confidence 456889999999999999999999999999999999999999999999988543
No 49
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.37 E-value=3.1e-13 Score=120.38 Aligned_cols=53 Identities=26% Similarity=0.505 Sum_probs=47.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCc------hhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 63 PDIKRGNFSKEEEETIINLHDMLGNR------WSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 63 p~ikk~~WT~EED~~Li~l~~~~G~k------Ws~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
+.+++++||+|||++|+++|++||++ |.+||++|||||++|||+||+.+|+++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh
Confidence 45789999999999999999999986 999999999999999999999999887
No 50
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.37 E-value=5.7e-13 Score=107.90 Aligned_cols=56 Identities=29% Similarity=0.455 Sum_probs=51.0
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhc----CCCCCHHHHHHHHHHHhHHH
Q 024484 60 YLRPDIKRGNFSKEEEETIINLHDMLGN-RWSAIAGR----LPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 60 ~L~p~ikk~~WT~EED~~Li~l~~~~G~-kWs~IA~~----lpgRT~~q~KnRw~~~lkk~ 115 (267)
-+.+..++++||.|||+.|+++|++||. +|+.|++. |+|||+++||+||+++++..
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 3566788999999999999999999997 99999998 59999999999999999854
No 51
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.35 E-value=1e-12 Score=103.97 Aligned_cols=54 Identities=26% Similarity=0.410 Sum_probs=48.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcC----CCCCHHHHHHHHHHHhHHH
Q 024484 62 RPDIKRGNFSKEEEETIINLHDMLGN-RWSAIAGRL----PGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 62 ~p~ikk~~WT~EED~~Li~l~~~~G~-kWs~IA~~l----pgRT~~q~KnRw~~~lkk~ 115 (267)
.+..++++||.|||+.|+++|++||. +|+.|++.+ +|||+.+||+||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34578899999999999999999996 999999965 8999999999999999764
No 52
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.01 E-value=1.1e-13 Score=106.27 Aligned_cols=54 Identities=26% Similarity=0.467 Sum_probs=50.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccccccccccC
Q 024484 8 EKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRP 63 (267)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p 63 (267)
..|++.+|+||+|||++|+.+|..|| .+|..||..+++ ||+.||+.||.++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 45789999999999999999999999 589999999998 9999999999999864
No 53
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.33 E-value=1.6e-12 Score=100.78 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhC----CchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 66 KRGNFSKEEEETIINLHDMLG----NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 66 kk~~WT~EED~~Li~l~~~~G----~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
.+++||.|||++|++++.+|| ++|.+||++|||||.++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 78999999999999999999999988764
No 54
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.31 E-value=1.6e-12 Score=102.48 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 67 RGNFSKEEEETIINLHDMLGN-RWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 67 k~~WT~EED~~Li~l~~~~G~-kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
+++||+|||++|+++|.+||. +|..||..|||||+.||+.||+++|.+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p 49 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINP 49 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcc
Confidence 589999999999999999995 899999999999999999999998864
No 55
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.30 E-value=3.9e-13 Score=99.92 Aligned_cols=57 Identities=14% Similarity=0.351 Sum_probs=51.1
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhC---CCCccccccccCcccCccccccccccccc
Q 024484 5 PCCEKMGLKKGPWTPEEDRILIVHIKKHG---HPNWRALPKQAGLLRCGKSCRLRWINYLR 62 (267)
Q Consensus 5 ~~~~k~~lkkg~WT~EED~~L~~~V~~~G---~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~ 62 (267)
+.-+++...+++||++||++|+.++..|| ..+|..||++|++ ||++||+.||.+++.
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34567888999999999999999999999 3589999999998 999999999998764
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.27 E-value=4.8e-12 Score=102.63 Aligned_cols=54 Identities=26% Similarity=0.449 Sum_probs=48.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhc----CCCCCHHHHHHHHHHHhHHH
Q 024484 62 RPDIKRGNFSKEEEETIINLHDMLGN-RWSAIAGR----LPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 62 ~p~ikk~~WT~EED~~Li~l~~~~G~-kWs~IA~~----lpgRT~~q~KnRw~~~lkk~ 115 (267)
....++++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34457899999999999999999996 99999996 49999999999999999764
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.13 E-value=5.7e-11 Score=91.97 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=58.6
Q ss_pred cccccccccccccCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcC-----CCCCHHHHHHHHHHHhHHHHH
Q 024484 50 GKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRL-----PGRTDNEIKNVWHTHLKKKAA 117 (267)
Q Consensus 50 ~kqCr~Rw~n~L~p~ikk~~WT~EED~~Li~l~~~~G~kWs~IA~~l-----pgRT~~q~KnRw~~~lkk~~~ 117 (267)
+.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+.++ ++||..+||+||..+.++...
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45678999999987 89999999999999999999999999999 589999999999999988743
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.1e-10 Score=81.95 Aligned_cols=48 Identities=13% Similarity=0.048 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhH
Q 024484 66 KRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLK 113 (267)
Q Consensus 66 kk~~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lk 113 (267)
..++||+||++++++++.+||.+|..||.+|||||..||+.+|....|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976543
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.97 E-value=6.4e-10 Score=82.26 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC----CchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 64 DIKRGNFSKEEEETIINLHDMLG----NRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 64 ~ikk~~WT~EED~~Li~l~~~~G----~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
..+.+.||.||+++|.+++.+|+ ++|.+||++| |||..+|++||..+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 6899999998 99999999999887643
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.96 E-value=8.5e-11 Score=91.10 Aligned_cols=48 Identities=10% Similarity=0.297 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCccccccccCcccCcccccccccccc
Q 024484 13 KKGPWTPEEDRILIVHIKKHG---HPNWRALPKQAGLLRCGKSCRLRWINYL 61 (267)
Q Consensus 13 kkg~WT~EED~~L~~~V~~~G---~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L 61 (267)
.+++||+|||++|+.++..|| ...|..||+.+++ ||.+||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 468999999999999999997 4679999999998 99999999999874
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.82 E-value=3.6e-09 Score=93.57 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 66 KRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 66 kk~~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
..++||+||.+++++++.+||++|..||+.|++||..|||++|+...|+.
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999999999999999999999888764
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=3.8e-09 Score=75.41 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=45.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccccccccc
Q 024484 8 EKMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINY 60 (267)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~ 60 (267)
++.....++||+||++++++++..|| ++|..||..+++ |+..||..+|...
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~-rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLER-KSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTT-SCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 34445678999999999999999999 799999999998 9999999998654
No 63
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.68 E-value=2.5e-08 Score=73.89 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhC----CchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 66 KRGNFSKEEEETIINLHDMLG----NRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 66 kk~~WT~EED~~Li~l~~~~G----~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
....||.+|+++|.+++..|+ .+|..||..+||||..+|+.||..+++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 346899999999999999998 4799999999999999999999887654
No 64
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.67 E-value=5.1e-09 Score=75.18 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccc---cccCcccCccccccccccccc
Q 024484 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALP---KQAGLLRCGKSCRLRWINYLR 62 (267)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia---~~~~~~Rt~kqCr~Rw~n~L~ 62 (267)
-.+++||+|||+.|++.|++||. +|..|+ .++.+ |+...+..||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 36789999999999999999995 999999 45555 999999999998754
No 65
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.60 E-value=5.1e-08 Score=69.33 Aligned_cols=47 Identities=23% Similarity=0.452 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCc-hhHHhh-cCCCCCHHHHHHHHHHHhH
Q 024484 67 RGNFSKEEEETIINLHDML--------GNR-WSAIAG-RLPGRTDNEIKNVWHTHLK 113 (267)
Q Consensus 67 k~~WT~EED~~Li~l~~~~--------G~k-Ws~IA~-~lpgRT~~q~KnRw~~~lk 113 (267)
+.+||.|||++|++.|.++ |++ |.++|+ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5789999999999999999 554 999999 8999999999999988764
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.52 E-value=6.2e-08 Score=94.16 Aligned_cols=47 Identities=15% Similarity=0.288 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 68 GNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 68 ~~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
.+||.||-+++++++.+||..|..||..++.||..|||++|....++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999876554
No 67
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.52 E-value=1.5e-08 Score=74.93 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=43.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC---CCCccccccccCcccCccccccccccccc
Q 024484 11 GLKKGPWTPEEDRILIVHIKKHG---HPNWRALPKQAGLLRCGKSCRLRWINYLR 62 (267)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~~~G---~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~ 62 (267)
..+++.||.|||++|.+++..|+ ...|..||..+| |+..+|+.||..+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 45678999999999999999998 357999999984 999999999987654
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.40 E-value=5e-08 Score=69.37 Aligned_cols=48 Identities=23% Similarity=0.441 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccCcccCccccccccccccc
Q 024484 14 KGPWTPEEDRILIVHIKKH--------GHPNWRALPK-QAGLLRCGKSCRLRWINYLR 62 (267)
Q Consensus 14 kg~WT~EED~~L~~~V~~~--------G~~nW~~Ia~-~~~~~Rt~kqCr~Rw~n~L~ 62 (267)
|.+||+|||++|+.+|..| |..-|..+++ .++. ++-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 6789999999999999999 5456999999 6776 999999999999875
No 69
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.36 E-value=4.3e-07 Score=69.57 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHhhCC---chhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 68 GNFSKEEEETIINLHDMLGN---RWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 68 ~~WT~EED~~Li~l~~~~G~---kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
--||.|||+.|+...++-|. .|..||+.|.+|+.+||++||+.|++=.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 36999999999999999996 7999999999999999999999998743
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.29 E-value=2e-07 Score=82.41 Aligned_cols=51 Identities=24% Similarity=0.429 Sum_probs=46.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccccccccccc
Q 024484 10 MGLKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLR 62 (267)
Q Consensus 10 ~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~ 62 (267)
.....++||.||++++++++.+|| ++|..||+.+++ |+..||+.+|.++.+
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 335578999999999999999999 899999999998 999999999998764
No 71
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.62 E-value=9.2e-08 Score=69.57 Aligned_cols=44 Identities=14% Similarity=0.365 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHhhCC---chhHHhhcCCCCCHHHHHHHHHHHhH
Q 024484 69 NFSKEEEETIINLHDMLGN---RWSAIAGRLPGRTDNEIKNVWHTHLK 113 (267)
Q Consensus 69 ~WT~EED~~Li~l~~~~G~---kWs~IA~~lpgRT~~q~KnRw~~~lk 113 (267)
-||.|||..|+..+++-|. .|..||+.| +|+++||++||+.+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999997 799999999 9999999999999886
No 72
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.27 E-value=1.8e-07 Score=69.30 Aligned_cols=48 Identities=17% Similarity=0.377 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCccccccccCcccCccccccccccccc
Q 024484 14 KGPWTPEEDRILIVHIKKHGH---PNWRALPKQAGLLRCGKSCRLRWINYLR 62 (267)
Q Consensus 14 kg~WT~EED~~L~~~V~~~G~---~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~ 62 (267)
...||.+|+++|..++..|+. .+|..||..+|+ |+..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 367999999999999999974 479999999998 999999999988754
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.21 E-value=3.7e-07 Score=67.45 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCC----chhHHhhcCCCCCHHHHHHHHH
Q 024484 67 RGNFSKEEEETIINLHDMLGN----RWSAIAGRLPGRTDNEIKNVWH 109 (267)
Q Consensus 67 k~~WT~EED~~Li~l~~~~G~----kWs~IA~~lpgRT~~q~KnRw~ 109 (267)
..+||.+|+++|.++...|+. +|.+||+.+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999884
No 74
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=3.7e-06 Score=60.19 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=45.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhh-cCCCCCHHHHHHHHHH
Q 024484 62 RPDIKRGNFSKEEEETIINLHDMLGNRWSAIAG-RLPGRTDNEIKNVWHT 110 (267)
Q Consensus 62 ~p~ikk~~WT~EED~~Li~l~~~~G~kWs~IA~-~lpgRT~~q~KnRw~~ 110 (267)
.|.++..+||+||-++..+++.+||..|..|++ .|++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 467888999999999999999999999999999 5999999999998864
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.17 E-value=2.9e-06 Score=65.41 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=50.8
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCC-----CCCHHHHHHHHHHHhHHHHH
Q 024484 55 LRWINYLRPDIKRGNFSKEEEETIINLHDMLGNRWSAIAGRLP-----GRTDNEIKNVWHTHLKKKAA 117 (267)
Q Consensus 55 ~Rw~n~L~p~ikk~~WT~EED~~Li~l~~~~G~kWs~IA~~lp-----gRT~~q~KnRw~~~lkk~~~ 117 (267)
+.|..+|. ...||.||-..|++|+++|+-+|..|+..+. +||-.++|.||..+.++.++
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44556654 3689999999999999999999999999874 79999999999999988743
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.08 E-value=7e-06 Score=75.72 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=80.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccc-------cccc----------------------------
Q 024484 15 GPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRL-------RWIN---------------------------- 59 (267)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~-------Rw~n---------------------------- 59 (267)
+.||..+...++.++.+||..+|..||..+++ ++...++. ||..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999986 77766542 2200
Q ss_pred ---------------cccCCCCCCCCCHHHHHHHHHHHHhhCC----chhHHhh------------cCCCCCHHHHHHHH
Q 024484 60 ---------------YLRPDIKRGNFSKEEEETIINLHDMLGN----RWSAIAG------------RLPGRTDNEIKNVW 108 (267)
Q Consensus 60 ---------------~L~p~ikk~~WT~EED~~Li~l~~~~G~----kWs~IA~------------~lpgRT~~q~KnRw 108 (267)
+..+..+...||++||..|+-++.+||- .|..|-. +|..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0012234568999999999999999994 6999962 45789999999999
Q ss_pred HHHhHHHHH
Q 024484 109 HTHLKKKAA 117 (267)
Q Consensus 109 ~~~lkk~~~ 117 (267)
++|++-..+
T Consensus 270 ~tLi~~iek 278 (304)
T 1ofc_X 270 NTLITLIER 278 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999976533
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.80 E-value=4.7e-06 Score=61.57 Aligned_cols=44 Identities=11% Similarity=0.304 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---CccccccccCcccCccccccccc
Q 024484 14 KGPWTPEEDRILIVHIKKHGHP---NWRALPKQAGLLRCGKSCRLRWI 58 (267)
Q Consensus 14 kg~WT~EED~~L~~~V~~~G~~---nW~~Ia~~~~~~Rt~kqCr~Rw~ 58 (267)
.+.||.+|+++|..++..|+.. .|.+||..+|+ |+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4579999999999999999743 79999999998 99999999985
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.70 E-value=5.2e-05 Score=58.44 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHH
Q 024484 67 RGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTH 111 (267)
Q Consensus 67 k~~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~ 111 (267)
...||+||.++..+++..||.+|..||..||+||..+|-..|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999988643
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.67 E-value=8.7e-05 Score=54.14 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhHHhh-cCCCCCHHHHHHHHH
Q 024484 67 RGNFSKEEEETIINLHDMLGNRWSAIAG-RLPGRTDNEIKNVWH 109 (267)
Q Consensus 67 k~~WT~EED~~Li~l~~~~G~kWs~IA~-~lpgRT~~q~KnRw~ 109 (267)
..+||+||-.+..+++.+||..|..|++ .||+||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 5689999999999999999999999999 599999999999987
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=1.9e-05 Score=56.50 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=43.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCcccCcccccccccc
Q 024484 9 KMGLKKGPWTPEEDRILIVHIKKHGHPNWRALPK-QAGLLRCGKSCRLRWIN 59 (267)
Q Consensus 9 k~~lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~-~~~~~Rt~kqCr~Rw~n 59 (267)
.|.+....||+||-++..+++.+|| ++|..|++ .++. |+..+|..-|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPN-KETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTT-SCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CcHHHHHHHHhc
Confidence 5778889999999999999999999 79999998 5887 999999887643
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.42 E-value=4.1e-05 Score=74.50 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccccccccc
Q 024484 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINY 60 (267)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~ 60 (267)
....+||.+|-+++++++.+|| ++|..||+.+++ |+..||+..|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgT-KT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSS-CCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 4568999999999999999999 799999999998 9999999998765
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.38 E-value=0.00017 Score=54.01 Aligned_cols=49 Identities=16% Similarity=0.416 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCC----------chhHHhhcC----CCCCHHHHHHHHHHHhHHH
Q 024484 67 RGNFSKEEEETIINLHDMLGN----------RWSAIAGRL----PGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 67 k~~WT~EED~~Li~l~~~~G~----------kWs~IA~~l----pgRT~~q~KnRw~~~lkk~ 115 (267)
...||.+|-.+||+++..+.. .|..||..| -.||+.||+++|.+|.+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999976421 499999986 3699999999999988876
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.20 E-value=8.9e-05 Score=57.18 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccC----cccCccccccccccccc
Q 024484 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAG----LLRCGKSCRLRWINYLR 62 (267)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~----~~Rt~kqCr~Rw~n~L~ 62 (267)
|..++||.||+..|+.++++|+ ..|..|+..+. .+|+..+++.||..+..
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 3458999999999999999999 89999999983 23999999999987643
No 84
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.97 E-value=0.0019 Score=60.93 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=76.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCcccCcccccc-------ccccc---------------------------
Q 024484 15 GPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRL-------RWINY--------------------------- 60 (267)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~-------Rw~n~--------------------------- 60 (267)
+.||.-+=..++.++.+||..+-..||..++++.+...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998899999999973366655541 11100
Q ss_pred -------------c----cCC-CCCCCCCHHHHHHHHHHHHhhC----CchhHHhhc------------CCCCCHHHHHH
Q 024484 61 -------------L----RPD-IKRGNFSKEEEETIINLHDMLG----NRWSAIAGR------------LPGRTDNEIKN 106 (267)
Q Consensus 61 -------------L----~p~-ikk~~WT~EED~~Li~l~~~~G----~kWs~IA~~------------lpgRT~~q~Kn 106 (267)
| .+. .+...||.+||..||-++.+|| +.|..|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 011 1345799999999999999999 469988332 46799999999
Q ss_pred HHHHHhHHH
Q 024484 107 VWHTHLKKK 115 (267)
Q Consensus 107 Rw~~~lkk~ 115 (267)
|..+|++-.
T Consensus 284 Rc~tLi~~I 292 (374)
T 2y9y_A 284 RGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999754
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.95 E-value=0.00027 Score=54.40 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccccccc
Q 024484 14 KGPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWI 58 (267)
Q Consensus 14 kg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~ 58 (267)
...||+||.++..++...|| ++|..|+..++. |+..+|-+.|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~-Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTT-CCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCC-CCHHHHHHHHh
Confidence 46799999999999999999 899999999998 99999998764
No 86
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.91 E-value=0.00031 Score=51.17 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCcccCcccccccccc
Q 024484 13 KKGPWTPEEDRILIVHIKKHGHPNWRALPK-QAGLLRCGKSCRLRWIN 59 (267)
Q Consensus 13 kkg~WT~EED~~L~~~V~~~G~~nW~~Ia~-~~~~~Rt~kqCr~Rw~n 59 (267)
....||+||-.+...++..|| ++|..|++ .+++ |+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPW-KSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 346899999999999999999 79999999 5887 999999987653
No 87
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.55 E-value=0.011 Score=50.58 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHhhC-CchhHHhh--cC--C--------C--CCHHHHHHHHHHHhHHH
Q 024484 68 GNFSKEEEETIINLHDMLG-NRWSAIAG--RL--P--------G--RTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 68 ~~WT~EED~~Li~l~~~~G-~kWs~IA~--~l--p--------g--RT~~q~KnRw~~~lkk~ 115 (267)
..||.+||..|+..+.+|| ++|.+|-. .| . . ++...|..|...+|+--
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 3599999999999999999 99999955 22 1 2 45678999988888643
No 88
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.53 E-value=0.0004 Score=50.45 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CCccccccccCcccCccccccccccccc
Q 024484 14 KGPWTPEEDRILIVHIKKHGH--PNWRALPKQAGLLRCGKSCRLRWINYLR 62 (267)
Q Consensus 14 kg~WT~EED~~L~~~V~~~G~--~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~ 62 (267)
--.||.|||..|+..+++-|. ..|..||+.+ + |++.|+..||...+.
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK 62 (70)
Confidence 356999999999999999995 3799999999 3 999999999987654
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.43 E-value=0.00086 Score=51.34 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCccccccccCcccCccccccccccc
Q 024484 15 GPWTPEEDRILIVHIKKHGH--PNWRALPKQAGLLRCGKSCRLRWINY 60 (267)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~--~nW~~Ia~~~~~~Rt~kqCr~Rw~n~ 60 (267)
-.||.|||..++.++++-|. ..|..||+.++. |++.|+++|++..
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHHH
Confidence 46999999999999999985 479999999987 9999999998764
No 90
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.42 E-value=0.00028 Score=52.90 Aligned_cols=49 Identities=22% Similarity=0.506 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CCccccccccC---cccCcccccccccccc
Q 024484 13 KKGPWTPEEDRILIVHIKKHGH---------PNWRALPKQAG---LLRCGKSCRLRWINYL 61 (267)
Q Consensus 13 kkg~WT~EED~~L~~~V~~~G~---------~nW~~Ia~~~~---~~Rt~kqCr~Rw~n~L 61 (267)
+...||.+|..+|+.+...... .-|..||..|. -.|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999865321 25999998843 4599999999998764
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.43 E-value=0.093 Score=37.53 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=39.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCc---hhHHhhcC--CCCCHHHHHHHHHHH
Q 024484 65 IKRGNFSKEEEETIINLHDMLGNR---WSAIAGRL--PGRTDNEIKNVWHTH 111 (267)
Q Consensus 65 ikk~~WT~EED~~Li~l~~~~G~k---Ws~IA~~l--pgRT~~q~KnRw~~~ 111 (267)
..+-.||+|..+..++++.++|.. +..|.+.| +|.|..+|+.|.+..
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 346689999999999999999954 78998874 799999999987653
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.32 E-value=0.013 Score=44.96 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccC----cccCcccccccccccc
Q 024484 12 LKKGPWTPEEDRILIVHIKKHGHPNWRALPKQAG----LLRCGKSCRLRWINYL 61 (267)
Q Consensus 12 lkkg~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~----~~Rt~kqCr~Rw~n~L 61 (267)
|....||.||...|+.++++|. -.|..|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999999 89999987754 2488889999987764
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.18 E-value=0.08 Score=48.64 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 67 RGNFSKEEEETIINLHDMLGN-RWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 67 k~~WT~EED~~Li~l~~~~G~-kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
-+.||..+....+.++.+||. .|..||..|+|+|..+|+..+..+..+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 357999999999999999995 799999999999999998777666654
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.37 E-value=0.12 Score=44.11 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=42.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC---CchhHHhh--cCCCCCHHHHHHHHHHHhHHH
Q 024484 65 IKRGNFSKEEEETIINLHDMLG---NRWSAIAG--RLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 65 ikk~~WT~EED~~Li~l~~~~G---~kWs~IA~--~lpgRT~~q~KnRw~~~lkk~ 115 (267)
-....||+.|-..|+.++.+|| .+|..|++ .|.++|..+|+..+..++..-
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 3567899999999999999999 57999986 489999999998777766543
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.89 E-value=0.36 Score=43.57 Aligned_cols=29 Identities=31% Similarity=0.643 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc
Q 024484 15 GPWTPEEDRILIVHIKKHGHPNWRALPKQ 43 (267)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~~nW~~Ia~~ 43 (267)
..|+.+||..|+..|.+||.++|.+|-.-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 45999999999999999999999999643
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=83.13 E-value=2.4 Score=38.09 Aligned_cols=49 Identities=10% Similarity=0.203 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHhhC---CchhHHhh--cCCCCCHHHHHHHHHHHhHHH
Q 024484 67 RGNFSKEEEETIINLHDMLG---NRWSAIAG--RLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 67 k~~WT~EED~~Li~l~~~~G---~kWs~IA~--~lpgRT~~q~KnRw~~~lkk~ 115 (267)
+++||.-|-..|+..+.+|| .+|..|+. .|+.++...++.-++.++..-
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 67899999999999999999 58999976 489999999999998887543
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=78.45 E-value=0.91 Score=32.32 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=33.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCC---ccccccccCc-ccCcccccccccc
Q 024484 11 GLKKGPWTPEEDRILIVHIKKHGHPN---WRALPKQAGL-LRCGKSCRLRWIN 59 (267)
Q Consensus 11 ~lkkg~WT~EED~~L~~~V~~~G~~n---W~~Ia~~~~~-~Rt~kqCr~Rw~n 59 (267)
...+-.||+|..++.+.+|...| .. +..|.+.|+. +.|..++..+.+.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34567899999999999999999 44 4566555442 1566666655443
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=76.52 E-value=3.4 Score=27.80 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 73 EEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 73 EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
+.+..++.++-..|-.+.+||..+ |-+...|+.+.+..+++-
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 456667777777889999999999 889999999887766543
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=72.76 E-value=4.8 Score=27.83 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHh----hCCchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 73 EEEETIINLHDM----LGNRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 73 EED~~Li~l~~~----~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
+.+..++.++-. .|-.+.+||..+ |-+...|+.+.+..+++-
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 345555555554 577899999999 999999999887776553
No 100
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=71.24 E-value=4.7 Score=27.50 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=31.9
Q ss_pred HHHHHHHHHHH----hhCCchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 73 EEEETIINLHD----MLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 73 EED~~Li~l~~----~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
+.+..++.++- ..|-.+.+||..+ |-+...|+.+.+..+++-
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34555555555 3578899999999 999999999888777653
No 101
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=67.16 E-value=4.1 Score=31.67 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=31.5
Q ss_pred HHHHHHHhhCC--------chhHHhhcCCCCCHHHHHHHHHHHhHHHH
Q 024484 77 TIINLHDMLGN--------RWSAIAGRLPGRTDNEIKNVWHTHLKKKA 116 (267)
Q Consensus 77 ~Li~l~~~~G~--------kWs~IA~~lpgRT~~q~KnRw~~~lkk~~ 116 (267)
.|..+|..+|+ .|.+||..|.--....+|..|..+|-..-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 100 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 100 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 47788888884 69999998744448899999999887653
No 102
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=64.68 E-value=14 Score=26.58 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 73 EEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 73 EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
+.+..++.++-..|-.-.+||..| |-+...|+.+.+..+++-
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455667777667788899999999 999999999988776553
No 103
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=63.71 E-value=9.9 Score=28.78 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=29.0
Q ss_pred HHHHHHHhhCC--------chhHHhhcCCCCC----HHHHHHHHHHHhHHH
Q 024484 77 TIINLHDMLGN--------RWSAIAGRLPGRT----DNEIKNVWHTHLKKK 115 (267)
Q Consensus 77 ~Li~l~~~~G~--------kWs~IA~~lpgRT----~~q~KnRw~~~lkk~ 115 (267)
.|..+|.++|+ .|.+||..|.--. ..++|..|..+|-..
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47777777874 6999999983322 468899998888654
No 104
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=63.20 E-value=8.5 Score=29.89 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=30.1
Q ss_pred HHHHHHHhhCC--------chhHHhhcCCCCC----HHHHHHHHHHHhHHH
Q 024484 77 TIINLHDMLGN--------RWSAIAGRLPGRT----DNEIKNVWHTHLKKK 115 (267)
Q Consensus 77 ~Li~l~~~~G~--------kWs~IA~~lpgRT----~~q~KnRw~~~lkk~ 115 (267)
.|..+|..+|+ .|.+||..|.--. ..++|..|..+|-..
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47788888884 6999999983222 568999999988765
No 105
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=61.69 E-value=14 Score=34.72 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHhhCC-chhHHhhcCC-CCCHHHHHHHHHHHh
Q 024484 68 GNFSKEEEETIINLHDMLGN-RWSAIAGRLP-GRTDNEIKNVWHTHL 112 (267)
Q Consensus 68 ~~WT~EED~~Li~l~~~~G~-kWs~IA~~lp-gRT~~q~KnRw~~~l 112 (267)
+.||.-+=..++.+..+||. .-..||..|. |.|..+|+. |...+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vF 169 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAF 169 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHH
Confidence 57999999999999999995 5999999997 999999994 54444
No 106
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=61.66 E-value=6.5 Score=31.04 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=30.7
Q ss_pred HHHHHHHhhCC--------chhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 77 TIINLHDMLGN--------RWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 77 ~Li~l~~~~G~--------kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
.|..+|.+.|+ .|.+||..|.--....+|..|..+|-..
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 37777777774 6999999874334899999999988776
No 107
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=59.34 E-value=11 Score=29.40 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=29.4
Q ss_pred HHHHHHHhhCC--------chhHHhhcCCCC--C--HHHHHHHHHHHhHHH
Q 024484 77 TIINLHDMLGN--------RWSAIAGRLPGR--T--DNEIKNVWHTHLKKK 115 (267)
Q Consensus 77 ~Li~l~~~~G~--------kWs~IA~~lpgR--T--~~q~KnRw~~~lkk~ 115 (267)
.|..+|.++|+ .|.+||..|.-- + ...+|..|..+|-..
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47777888874 699999998322 1 368899999888775
No 108
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=58.02 E-value=20 Score=24.47 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 70 FSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 70 WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
+|+.| ..++.++ ..|-.-.+||..| |-+...|+.+.+..+++
T Consensus 17 L~~~e-~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERE-RQVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHH-HHHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34444 4445555 6677889999999 88999999988777655
No 109
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=57.89 E-value=13 Score=29.20 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=29.7
Q ss_pred HHHHHHHhhCC--------chhHHhhcCCCCC----HHHHHHHHHHHhHHH
Q 024484 77 TIINLHDMLGN--------RWSAIAGRLPGRT----DNEIKNVWHTHLKKK 115 (267)
Q Consensus 77 ~Li~l~~~~G~--------kWs~IA~~lpgRT----~~q~KnRw~~~lkk~ 115 (267)
.|..+|..+|+ .|.+||..|.--+ ..++|..|..+|-..
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47777888874 6999999883322 468899999888776
No 110
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=55.41 E-value=17 Score=28.90 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=25.5
Q ss_pred HhhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 83 DMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 83 ~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
-..|-...+||..| |-+...|+++.+..+++
T Consensus 153 ~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 153 ELDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp HTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33467789999999 89999999998877654
No 111
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=54.68 E-value=16 Score=26.12 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHh----hCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 73 EEEETIINLHDM----LGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 73 EED~~Li~l~~~----~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
+.+..++.+.-. .|-.+.+||..| |-+...|+.+.+..+++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 345555666554 567899999999 99999999988776654
No 112
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=52.98 E-value=21 Score=26.07 Aligned_cols=43 Identities=21% Similarity=0.150 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 69 NFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 69 ~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
..|+.|-++|.- + ..|-.-.+||..| |-+...|+.+.+.++++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 456666555554 5 6788889999999 89999999988776655
No 113
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=52.59 E-value=11 Score=29.80 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=25.5
Q ss_pred hhCCchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 84 MLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 84 ~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
..|-...+||..| |-+...|+++.+..+++-
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3466789999999 899999999988777653
No 114
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=52.22 E-value=21 Score=25.30 Aligned_cols=43 Identities=26% Similarity=0.223 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 69 NFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 69 ~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
..|+.|-++|.- + ..|-.-.+||..| |-+...|+.+.+.++++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 356666555544 4 5788889999999 89999999988776655
No 115
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=50.57 E-value=29 Score=25.22 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 66 KRGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 66 kk~~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
.....|+.|-++|.-++ .|-.-.+||..| |-+...|+++...+++|-
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34567888777766555 788889999999 999999999988877653
No 116
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=50.29 E-value=21 Score=27.11 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHH
Q 024484 70 FSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (267)
Q Consensus 70 WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~Kn 106 (267)
=|..-+..|..+...+|..|..+|..| |=+..+|..
T Consensus 13 ~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 13 GTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp CSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred hHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 367778888899999999999999999 888877655
No 117
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=48.92 E-value=27 Score=23.38 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 68 GNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 68 ~~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
..+|+.|-++|.- + ..|-.-.+||..+ |-+...|+.+.+.++++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4466766666555 4 5677889999999 88999999988776654
No 118
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=48.28 E-value=23 Score=27.79 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=30.1
Q ss_pred HHHHHHHhhCC--------chhHHhhcC--CCC---CHHHHHHHHHHHhHHH
Q 024484 77 TIINLHDMLGN--------RWSAIAGRL--PGR---TDNEIKNVWHTHLKKK 115 (267)
Q Consensus 77 ~Li~l~~~~G~--------kWs~IA~~l--pgR---T~~q~KnRw~~~lkk~ 115 (267)
.|..+|..+|+ .|.+||..| |.. ....+|..|..+|-..
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47778888884 699999987 222 2578999999998765
No 119
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=48.22 E-value=28 Score=26.37 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 73 EEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 73 EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
+.+..++.++-..|-...+||..| |-+...|+.+.+..+++-
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 345666777777788899999999 999999999887766543
No 120
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=47.90 E-value=21 Score=28.71 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=29.9
Q ss_pred HHHHHHHhhCC--------chhHHhhcC--CCC---CHHHHHHHHHHHhHHH
Q 024484 77 TIINLHDMLGN--------RWSAIAGRL--PGR---TDNEIKNVWHTHLKKK 115 (267)
Q Consensus 77 ~Li~l~~~~G~--------kWs~IA~~l--pgR---T~~q~KnRw~~~lkk~ 115 (267)
.|..+|.++|+ .|.+||..| |.. ....+|..|..+|-..
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 47778888884 699999987 322 2578999999988765
No 121
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=47.66 E-value=8.5 Score=28.57 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=27.8
Q ss_pred HHHHHHHhhCC--------chhHHhhcCCCC----CHHHHHHHHHHHhHHH
Q 024484 77 TIINLHDMLGN--------RWSAIAGRLPGR----TDNEIKNVWHTHLKKK 115 (267)
Q Consensus 77 ~Li~l~~~~G~--------kWs~IA~~lpgR----T~~q~KnRw~~~lkk~ 115 (267)
.|..+|.+.|+ .|.+||..|.-- ...++|..|..+|-..
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 47777777763 699999987221 2568899888877653
No 122
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=46.82 E-value=20 Score=28.11 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=50.9
Q ss_pred CCCCCCCHHHH--HHHHHHHHHhCCCCccccccccCcccCcccccccccccccCCCCCCCCCHHHHHHHHHHHHhhCC--
Q 024484 12 LKKGPWTPEED--RILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEETIINLHDMLGN-- 87 (267)
Q Consensus 12 lkkg~WT~EED--~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ikk~~WT~EED~~Li~l~~~~G~-- 87 (267)
.=+.+|.+.+. +.|.+..+..| .....++. +++ |.-. =-.|..+|.++|+
T Consensus 5 ~~~~r~~~~~~Fl~~L~~F~~~rG-tpl~~~P~-i~g-k~lD-----------------------L~~Ly~~V~~~GG~~ 58 (121)
T 2rq5_A 5 SLGRRWGPNVQRLACIKKHLRSQG-ITMDELPL-IGG-CELD-----------------------LACFFRLINEMGGMQ 58 (121)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHTT-CCCSSCCE-ETT-EECC-----------------------HHHHHHHHHHTTSHH
T ss_pred HhhHhcCCcHHHHHHHHHHHHHcC-CCCCCCCc-CCC-Eecc-----------------------HHHHHHHHHHcCcHH
Confidence 33567988876 55777777778 34444543 332 2221 1247788888885
Q ss_pred ------chhHHhhcC--CCC---CHHHHHHHHHHHhHHH
Q 024484 88 ------RWSAIAGRL--PGR---TDNEIKNVWHTHLKKK 115 (267)
Q Consensus 88 ------kWs~IA~~l--pgR---T~~q~KnRw~~~lkk~ 115 (267)
.|.+||..| |.- ....+|.+|..+|-..
T Consensus 59 ~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 59 QVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 699999988 322 2568899999888543
No 123
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=46.12 E-value=33 Score=22.20 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 75 EETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 75 D~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
+..++.+ -..|-.-.+||..| |-+...|+.+.+.++++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 4455555 35577789999999 89999999988877765
No 124
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=45.93 E-value=38 Score=25.66 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=24.9
Q ss_pred hhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 84 MLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 84 ~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
..|-...+||..| |-+...|+++.+..+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3566789999999 89999999998876654
No 125
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=45.20 E-value=29 Score=28.32 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 75 EETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 75 D~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
+..++.++-..|-...+||..| |-+...|+.+.+..+++
T Consensus 192 ~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 192 EKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3344444444577899999999 99999999988776654
No 126
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=44.32 E-value=6.5 Score=31.06 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCC-------CCccccccccCcccCc----ccccccccccccCCCCCCCCCHHHHHHHHHHHH
Q 024484 23 RILIVHIKKHGH-------PNWRALPKQAGLLRCG----KSCRLRWINYLRPDIKRGNFSKEEEETIINLHD 83 (267)
Q Consensus 23 ~~L~~~V~~~G~-------~nW~~Ia~~~~~~Rt~----kqCr~Rw~n~L~p~ikk~~WT~EED~~Li~l~~ 83 (267)
-+|..+|.+.|- +.|..|+..++...+. ...+..|..+|.|- ...+++|-..|.+-+.
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 367788888873 4799999999864432 34678899998763 2377788888776654
No 127
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=43.72 E-value=3.8 Score=31.87 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=30.1
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccCcccccccccccccC
Q 024484 24 ILIVHIKKHGH-------PNWRALPKQAGLLRCGKSCRLRWINYLRP 63 (267)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p 63 (267)
+|..+|.+.|- +.|..|+..++... +...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57777877763 37999999998733 77788888888875
No 128
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=43.06 E-value=11 Score=28.53 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=29.3
Q ss_pred HHHHHHHhhCC--------chhHHhhcCC--CC---CHHHHHHHHHHHhHHH
Q 024484 77 TIINLHDMLGN--------RWSAIAGRLP--GR---TDNEIKNVWHTHLKKK 115 (267)
Q Consensus 77 ~Li~l~~~~G~--------kWs~IA~~lp--gR---T~~q~KnRw~~~lkk~ 115 (267)
.|..+|.++|+ .|.+||..|. .. ...++|..|..+|-..
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47777788873 6999999872 21 2468999999998765
No 129
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=42.89 E-value=23 Score=27.29 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhCCchhHHhhcCCCCCHHHHHH
Q 024484 75 EETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (267)
Q Consensus 75 D~~Li~l~~~~G~kWs~IA~~lpgRT~~q~Kn 106 (267)
|..|..+.+.+|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4578888899999999999999 777776654
No 130
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=42.84 E-value=26 Score=25.06 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 70 FSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 70 WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
.|+.|-++| .++ ..|-.-.+||..| |-+...|+.+.+.++++
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455555555 444 5687889999999 89999999988777655
No 131
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=40.85 E-value=28 Score=26.93 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=23.6
Q ss_pred HHHHHHHhhCCchhHHhhcCCCCCHHHHHH
Q 024484 77 TIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (267)
Q Consensus 77 ~Li~l~~~~G~kWs~IA~~lpgRT~~q~Kn 106 (267)
.|..+.+.+|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666889999999999999 777776644
No 132
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=40.24 E-value=29 Score=26.85 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCchhHHhhcCCCCCHHHHHH
Q 024484 77 TIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (267)
Q Consensus 77 ~Li~l~~~~G~kWs~IA~~lpgRT~~q~Kn 106 (267)
.|..+.+.+|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667888999999999999 777776644
No 133
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=40.05 E-value=30 Score=27.54 Aligned_cols=42 Identities=7% Similarity=0.026 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 73 EEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 73 EED~~Li~l~~~~G-~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
+-|..|+++.++-| -.|.+||+.+ |=+...|+.|...+.+..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 45788888888777 4699999999 999999999998776654
No 134
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=37.34 E-value=36 Score=25.75 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhCCchhHHhhcCCCCCHHHHHH
Q 024484 75 EETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (267)
Q Consensus 75 D~~Li~l~~~~G~kWs~IA~~lpgRT~~q~Kn 106 (267)
+..|-.+....|..|..+|.+| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4556677788899999999999 777777754
No 135
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=37.30 E-value=6.2 Score=30.71 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccC---cccccccccccccC
Q 024484 24 ILIVHIKKHGH-------PNWRALPKQAGLLRC---GKSCRLRWINYLRP 63 (267)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~Ia~~~~~~Rt---~kqCr~Rw~n~L~p 63 (267)
+|..+|.+.|- +.|..|+..++...+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57778888873 479999999887432 34567778887765
No 136
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=35.24 E-value=50 Score=25.09 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 73 EEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 73 EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
+.+..++.++-..|-.-.+||..+ |-+...|+.+.+..+++
T Consensus 25 ~~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 25 DKQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345566677767788899999999 99999999988876654
No 137
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=34.76 E-value=6.5 Score=30.98 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccC----cccccccccccccC
Q 024484 24 ILIVHIKKHGH-------PNWRALPKQAGLLRC----GKSCRLRWINYLRP 63 (267)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~Ia~~~~~~Rt----~kqCr~Rw~n~L~p 63 (267)
+|..+|.+.|- +.|..|+..++...+ +.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777763 479999999886432 34567778888765
No 138
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=34.62 E-value=25 Score=29.37 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=18.4
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 024484 10 MGLKKGPWTPEEDRILI--------VHIKKHG 33 (267)
Q Consensus 10 ~~lkkg~WT~EED~~L~--------~~V~~~G 33 (267)
|.-..|-||+|+|+.|. +++++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 33567999999998875 4677777
No 139
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=33.57 E-value=33 Score=28.68 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=19.0
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHhhC
Q 024484 63 PDIKRGNFSKEEEETII--------NLHDMLG 86 (267)
Q Consensus 63 p~ikk~~WT~EED~~Li--------~l~~~~G 86 (267)
|....|-||.|+|+.|. +|.++||
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 56788999999999886 5566665
No 140
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=33.50 E-value=1.6e+02 Score=22.76 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccccccccc------ccCCCC----CCCCCHHHHHHHHHHHHh
Q 024484 15 GPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINY------LRPDIK----RGNFSKEEEETIINLHDM 84 (267)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~------L~p~ik----k~~WT~EED~~Li~l~~~ 84 (267)
.+.|.++-..++.++. .| .....||+.++. +...+ .||... +.+... ....+.++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lgi--s~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQLRV--SHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHHTC--CSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCc--CHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688888888877774 56 567889998874 32222 233332 222221 234788888888888866
Q ss_pred hCC-chhHHhhcC
Q 024484 85 LGN-RWSAIAGRL 96 (267)
Q Consensus 85 ~G~-kWs~IA~~l 96 (267)
.+. .-.+|+..|
T Consensus 99 ~~~~s~~~i~~~l 111 (159)
T 2k27_A 99 NPTMFAWEIRDRL 111 (159)
T ss_dssp CSSSCHHHHHHHH
T ss_pred CccchHHHHHHHH
Confidence 431 223455444
No 141
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=33.49 E-value=66 Score=23.18 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHH
Q 024484 72 KEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNV 107 (267)
Q Consensus 72 ~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnR 107 (267)
.-|...|.++++.+|++.++.|+.| |=+...+..+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477888999999999999999999 7776666443
No 142
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=33.32 E-value=75 Score=23.49 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 67 RGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 67 k~~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
....|+.|-++|.-+ ..|-.-.+||..| |-+...|+.+...+++|
T Consensus 32 ~~~Lt~re~~Vl~l~--~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLF--AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHH--HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH--HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 456788777776543 3687889999999 88999999988877765
No 143
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=33.05 E-value=57 Score=21.84 Aligned_cols=34 Identities=12% Similarity=-0.022 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHH
Q 024484 72 KEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (267)
Q Consensus 72 ~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~Kn 106 (267)
.-|.+.|.++.+.+|++.++.|+.| |=+...+..
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 3577889999999999999999988 555544443
No 144
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=31.03 E-value=85 Score=24.16 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 73 EEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 73 EED~~Li~l~~~~G-~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
+-|..|+.+.+..| -.+.+||+.+ |=+...|..|...+.+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G 51 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLG 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 44667777777766 5799999999 889999999888776544
No 145
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.35 E-value=63 Score=27.48 Aligned_cols=43 Identities=23% Similarity=0.177 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 69 NFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 69 ~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
..++.|- .++.++ ..|-.-.+||..| |.+...||.|-+..+++
T Consensus 197 ~L~~~er-evl~L~-~~G~s~~EIA~~L-~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 197 ILSEREK-EILRCI-RKGLSSKEIAATL-YISVNTVNRHRQNILEK 239 (258)
T ss_dssp SSCHHHH-HHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4555444 455555 5788899999999 99999999998877654
No 146
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=26.83 E-value=37 Score=24.93 Aligned_cols=31 Identities=16% Similarity=0.366 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhCCchhHHhhcCCCCCHHHHHH
Q 024484 75 EETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (267)
Q Consensus 75 D~~Li~l~~~~G~kWs~IA~~lpgRT~~q~Kn 106 (267)
+..+..+....|..|..+|.+| |=+..+|..
T Consensus 14 ~~~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~ 44 (99)
T 1fad_A 14 QVAFDIVCDNVGRDWKRLAREL-KVSEAKMDG 44 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 4456667788899999999999 777777755
No 147
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=26.44 E-value=1.4e+02 Score=22.68 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHH
Q 024484 67 RGNFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKN 106 (267)
Q Consensus 67 k~~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~Kn 106 (267)
....|.++-..++.++. -|..-.+||+.| |.+...|..
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~r 67 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSK 67 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHH
Confidence 34688999889998885 587889999999 788777765
No 148
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=26.31 E-value=78 Score=25.51 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 72 KEEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 72 ~EED~~Li~l~~~~G-~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
.+-|..|+.+.+..| -.+.+||+.+ |-+...|+.|...+.+..
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESG 69 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 355677888877766 4699999999 889999999887766543
No 149
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=26.04 E-value=25 Score=28.23 Aligned_cols=40 Identities=28% Similarity=0.549 Sum_probs=28.8
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccC----cccccccccccccC
Q 024484 24 ILIVHIKKHGH-------PNWRALPKQAGLLRC----GKSCRLRWINYLRP 63 (267)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~Ia~~~~~~Rt----~kqCr~Rw~n~L~p 63 (267)
+|..+|.+.|- +.|..|+..++...+ +.+.+..|.++|.|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 56677777763 479999999886432 34567788888876
No 150
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.86 E-value=1.1e+02 Score=17.96 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHH
Q 024484 69 NFSKEEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVW 108 (267)
Q Consensus 69 ~WT~EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw 108 (267)
..+.++-..++.++ .-|-...+||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 35666666777665 3577789999999 78888776643
No 151
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=24.97 E-value=36 Score=26.61 Aligned_cols=41 Identities=15% Similarity=0.058 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 73 EEEETIINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 73 EED~~Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
+++..++.++...|-.-.+||..| |-+...|+++.+..+++
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~ 136 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAE 136 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445556666666677889999999 99999999988766554
No 152
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=24.57 E-value=1e+02 Score=23.84 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 73 EEEETIINLHDMLG-NRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 73 EED~~Li~l~~~~G-~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
+-|..|+.+....| -.+.+||+.+ |-+...|..|...+....
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G 49 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESG 49 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 34667777777766 4799999999 889999999887776544
No 153
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=24.23 E-value=1.1e+02 Score=22.79 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=29.6
Q ss_pred HHHHHHHHHHh----hCCchhHHhhcCCCCCHHHHHHHHHHHhHHH
Q 024484 74 EEETIINLHDM----LGNRWSAIAGRLPGRTDNEIKNVWHTHLKKK 115 (267)
Q Consensus 74 ED~~Li~l~~~----~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk~ 115 (267)
.++.++.+.-- -|-.+.+||..| |-+...|+++-+..+++-
T Consensus 23 reR~Vi~Lry~l~~~e~~s~~EIA~~l-giS~~tVr~~~~rAlkkL 67 (99)
T 3t72_q 23 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 67 (99)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34555555432 246799999999 899999999887777653
No 154
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.86 E-value=1.8e+02 Score=22.10 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCcccCccccccccccc------ccCCCC----CCCCCHHHHHHHHHHHHh
Q 024484 15 GPWTPEEDRILIVHIKKHGHPNWRALPKQAGLLRCGKSCRLRWINY------LRPDIK----RGNFSKEEEETIINLHDM 84 (267)
Q Consensus 15 g~WT~EED~~L~~~V~~~G~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~------L~p~ik----k~~WT~EED~~Li~l~~~ 84 (267)
...|.++-..++.++. .| ..-..||+.++. +...+ .||... +.+... ....+.+..+.|++++.+
T Consensus 31 ~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lgi--s~~TV-~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QG-VRPCDISRQLRV--SHGCV-SKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TT-CCHHHHHHHHTC--CHHHH-HHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCc--CHHHH-HHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 4688888888887774 46 567889998884 32222 233321 223222 234788888888888876
Q ss_pred hCC-chhHHhhcC
Q 024484 85 LGN-RWSAIAGRL 96 (267)
Q Consensus 85 ~G~-kWs~IA~~l 96 (267)
.+. .-.+|+..|
T Consensus 106 ~~~~s~~~i~~~l 118 (149)
T 1k78_A 106 NPTMFAWEIRDRL 118 (149)
T ss_dssp CTTCCHHHHHHHH
T ss_pred CcchhHHHHHHHH
Confidence 532 224555544
No 155
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=22.48 E-value=18 Score=29.47 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHHhHH
Q 024484 78 IINLHDMLGNRWSAIAGRLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 78 Li~l~~~~G~kWs~IA~~lpgRT~~q~KnRw~~~lkk 114 (267)
++.++-..|-...+||+.| |-+...|+.+.+..+++
T Consensus 206 vl~l~~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 206 IVYLRYYKDQTQSEVASRL-GISQVQMSRLEKKILQH 241 (243)
T ss_dssp -------------------------------------
T ss_pred HHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3333334456688999998 88888888877665543
No 156
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.30 E-value=1.1e+02 Score=21.47 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhhC---C-chhHHhhcCCCCCHHHHHHHHHHHhH
Q 024484 71 SKEEEETIINLHDMLG---N-RWSAIAGRLPGRTDNEIKNVWHTHLK 113 (267)
Q Consensus 71 T~EED~~Li~l~~~~G---~-kWs~IA~~lpgRT~~q~KnRw~~~lk 113 (267)
|.+-|..|+.+....| . .=.+||+.| |-+...|..+-..+.+
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 5667788989999988 2 468999999 7777777766554443
Done!