BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024485
         (267 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
          Protein
          Length = 72

 Score = 42.7 bits (99), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 21 LFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 58
          L +F R W KI   IGS+TV+Q++S+A++YF    K G
Sbjct: 24 LAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG 61


>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
          Human Zzz3 Protein
          Length = 75

 Score = 35.8 bits (81), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 26 RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 58
          R W+KI   +G++T  Q+ S  QKYF+K+ K G
Sbjct: 34 RRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66


>pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus: Internal Aldimine Form
 pdb|3B1C|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus: Internal Aldimine Form
 pdb|3B1C|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus: Internal Aldimine Form
 pdb|3B1C|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus: Internal Aldimine Form
 pdb|3B1D|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: External Aldimine
           Form
 pdb|3B1D|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: External Aldimine
           Form
 pdb|3B1D|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: External Aldimine
           Form
 pdb|3B1D|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: External Aldimine
           Form
 pdb|3B1E|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
           Form
 pdb|3B1E|B Chain B, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
           Form
 pdb|3B1E|C Chain C, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
           Form
 pdb|3B1E|D Chain D, Crystal Structure Of Betac-S Lyase From Streptococcus
           Anginosus In Complex With L-Serine: Alpha-Aminoacrylate
           Form
          Length = 392

 Score = 27.7 bits (60), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 213 DPIDVETVLLLMRNLSINLTSPDFEDHRRLLSSYEIDPETANHSGTNN 260
           D I  +  L    ++S N  SPDF+D   +LSS     +T N +GT N
Sbjct: 203 DEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSS---ATKTFNIAGTKN 247


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,055,620
Number of Sequences: 62578
Number of extensions: 244109
Number of successful extensions: 509
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 5
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)