Query 024485
Match_columns 267
No_of_seqs 191 out of 460
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 04:57:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0724 Zuotin and related mol 99.5 3E-15 6.5E-20 137.7 -0.8 236 9-249 56-310 (335)
2 TIGR01557 myb_SHAQKYF myb-like 99.5 4.2E-14 9E-19 103.5 3.9 48 6-53 3-56 (57)
3 PF00249 Myb_DNA-binding: Myb- 98.8 4.4E-09 9.6E-14 72.6 4.6 43 8-50 3-47 (48)
4 cd00167 SANT 'SWI3, ADA2, N-Co 98.3 6.1E-07 1.3E-11 58.0 3.8 44 8-51 1-45 (45)
5 smart00717 SANT SANT SWI3, AD 98.2 1.6E-06 3.4E-11 56.7 3.4 44 8-51 3-47 (49)
6 PF13921 Myb_DNA-bind_6: Myb-l 97.8 2E-05 4.4E-10 55.9 3.1 42 10-51 2-43 (60)
7 KOG0457 Histone acetyltransfer 97.0 0.00085 1.8E-08 66.4 4.4 47 7-53 68-120 (438)
8 COG5259 RSC8 RSC chromatin rem 96.9 0.00077 1.7E-08 67.5 3.4 33 15-47 288-320 (531)
9 KOG0724 Zuotin and related mol 96.5 0.0012 2.7E-08 61.1 2.0 69 6-81 164-239 (335)
10 KOG1279 Chromatin remodeling f 96.2 0.0038 8.3E-08 62.9 3.4 37 11-47 253-294 (506)
11 PLN03091 hypothetical protein; 95.0 0.033 7.3E-07 55.7 4.9 47 10-56 66-117 (459)
12 PLN03212 Transcription repress 94.9 0.097 2.1E-06 48.9 7.3 47 10-56 77-128 (249)
13 PLN03212 Transcription repress 94.8 0.026 5.6E-07 52.7 3.4 44 9-52 23-73 (249)
14 PLN03162 golden-2 like transcr 94.8 0.065 1.4E-06 53.2 6.1 72 6-77 237-326 (526)
15 COG5114 Histone acetyltransfer 94.6 0.076 1.6E-06 51.9 6.1 46 8-53 60-111 (432)
16 PLN03091 hypothetical protein; 94.1 0.037 8E-07 55.4 2.9 45 8-52 11-62 (459)
17 smart00426 TEA TEA domain. 90.6 0.14 2.9E-06 39.6 1.4 34 15-48 12-66 (68)
18 PLN03142 Probable chromatin-re 90.3 0.36 7.7E-06 52.7 4.7 43 12-54 830-873 (1033)
19 KOG0049 Transcription factor, 85.1 0.79 1.7E-05 48.6 3.3 40 10-49 411-456 (939)
20 KOG3841 TEF-1 and related tran 83.2 1.7 3.7E-05 43.5 4.5 48 10-57 75-148 (455)
21 KOG4468 Polycomb-group transcr 82.0 2.2 4.8E-05 44.9 5.0 50 15-64 97-156 (782)
22 PF01285 TEA: TEA/ATTS domain 78.3 1.7 3.7E-05 43.3 2.8 41 10-50 48-112 (431)
23 COG5118 BDP1 Transcription ini 69.9 3.8 8.2E-05 41.3 2.8 31 15-45 374-404 (507)
24 KOG3554 Histone deacetylase co 67.7 3.5 7.6E-05 42.5 2.1 40 10-52 284-329 (693)
25 PF10141 ssDNA-exonuc_C: Singl 64.9 7.3 0.00016 34.3 3.4 46 180-225 90-138 (195)
26 KOG0049 Transcription factor, 62.8 10 0.00022 40.7 4.4 38 10-47 359-402 (939)
27 KOG4329 DNA-binding protein [G 62.4 4.8 0.00011 40.3 1.9 30 15-44 286-316 (445)
28 KOG0048 Transcription factor, 58.5 17 0.00037 32.9 4.6 36 16-51 72-107 (238)
29 KOG0048 Transcription factor, 55.5 9.5 0.00021 34.5 2.5 46 7-52 10-57 (238)
30 KOG4167 Predicted DNA-binding 47.9 14 0.0003 40.0 2.6 30 15-44 628-657 (907)
31 PF12451 VPS11_C: Vacuolar pro 37.5 33 0.00072 24.4 2.5 28 10-37 17-44 (49)
32 PHA00442 host recBCD nuclease 31.0 42 0.00091 25.4 2.2 18 16-33 30-48 (59)
33 KOG0050 mRNA splicing protein 30.2 80 0.0017 33.2 4.7 44 9-52 5-54 (617)
34 TIGR03238 dnd_assoc_3 dnd syst 26.0 85 0.0019 32.5 4.1 52 197-248 243-296 (504)
35 TIGR02937 sigma70-ECF RNA poly 25.1 2.1E+02 0.0046 21.5 5.3 33 23-56 124-156 (158)
36 PF00191 Annexin: Annexin; In 22.5 1.4E+02 0.0031 20.9 3.6 39 16-54 5-43 (66)
37 PF08281 Sigma70_r4_2: Sigma-7 22.3 2.3E+02 0.0049 19.1 4.5 36 17-53 18-53 (54)
38 KOG0027 Calmodulin and related 22.0 2.7E+02 0.0059 22.8 5.7 62 186-250 29-98 (151)
39 KOG1194 Predicted DNA-binding 20.7 1.5E+02 0.0032 30.9 4.5 27 16-42 197-223 (534)
40 cd08312 Death_MyD88 Death doma 20.1 56 0.0012 25.0 1.2 21 22-43 13-33 (79)
41 PF03452 Anp1: Anp1; InterPro 20.0 1.9E+02 0.0042 27.5 4.9 56 3-58 27-87 (269)
No 1
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3e-15 Score=137.66 Aligned_cols=236 Identities=16% Similarity=0.085 Sum_probs=147.2
Q ss_pred cccCcHHHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHHHHHhc----CCCCCCCCCCCCCCCCCCCCccccCCC
Q 024485 9 VFLSRWPYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN----GTAEHLPPPRPKRKAAHPYPQKASKNA 84 (267)
Q Consensus 9 ~~~GrW~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~Kl~k~----g~~~~~Pppr~kRks~hp~p~k~~~~~ 84 (267)
|+-.+|++|.++|..|++.|++|.+|++.++.+|+++|+|+||-++.+. ...+.+|++++++++.|+|+++...+.
T Consensus 56 ~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~ 135 (335)
T KOG0724|consen 56 RTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPFPKYGKSDTSLAEVEEFYNFWPKFKSWRQYPQKDEPDE 135 (335)
T ss_pred cchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCccccCccccccccccccCCccccccccccCCCCCCccc
Confidence 6889999999999999889999999999999999999999999999985 223349999999999999999987642
Q ss_pred CccccccCcccCCCCcCCCCcccCCCCccccccccccCC-CCCCCC-CCcccCCCCC-CCCCccCCCCCCCCCCCccccc
Q 024485 85 PMLSQVSGSFQSSSAQLEPGHFLRPDSSSMLMIPMASAA-TSWTNN-VQTVSLSPAS-KGPEVANNRSNSTDSTPKARVS 161 (267)
Q Consensus 85 ~~~~q~~~~~qss~~~~~pg~~~~~dsss~~~~~~~s~~-~sw~~~-~~~~~~~~~~-kg~~~~~n~~s~~es~p~~~~~ 161 (267)
... +.... ....... +++....+..+..+++.+... ..|... .......... ........+....++-+.....
T Consensus 136 ~~~-~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~ 212 (335)
T KOG0724|consen 136 EDS-ENRSQ-SRYSGGT-QRGKSNAEELRRKGTPVTERERKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAF 212 (335)
T ss_pred ccc-cchhh-hhhcccc-cccccchhhhhhccchhHHHHHHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhh
Confidence 211 11000 0111112 333333332222232222211 111111 0000000000 0000011111111110000000
Q ss_pred CccccCCCCcccCCCCCCCCcCCCChHHHhh--hhhccc-----C----CCchhHHHHhhcCCcchHHHHHHHHH-Hhhh
Q 024485 162 GELTDQGGELTDQGNNSHPLRVLPDFAQVYT--FIGSVF-----D----PNASDHVQKLKKMDPIDVETVLLLMR-NLSI 229 (267)
Q Consensus 162 ~~~~~~~ge~~~~~~~~~~l~~~PdFaqVY~--FiGsvF-----D----p~~~~hlqkLk~MDPId~ETvLLLMr-NLsi 229 (267)
. .-..-....+.....+.++.++++++++. +.++++ + |...+|.+.++.|++++.++..+.|. |+..
T Consensus 213 ~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (335)
T KOG0724|consen 213 E-KALARQKSGEEEKRRKSIEDITTASEAEDRKKEDEAAKEAKKKPRDTPSLKSRNKRLKSFDGIAEESSETEDSLELVA 291 (335)
T ss_pred H-HHHHHHhhhccccccchhhhhhccchhhhhhcchhhhhhhhccccccccccchhhhcccCCccCCCchhHHHhHHHHH
Confidence 0 00000122334455667889999999988 999999 7 88999999999999999999999999 8999
Q ss_pred cCCCcchHHHHHHhhhccCC
Q 024485 230 NLTSPDFEDHRRLLSSYEID 249 (267)
Q Consensus 230 NL~sp~fe~~~~llssy~~~ 249 (267)
+|+++.|++++.+++. ...
T Consensus 292 ~~~~~~~~~~~~~~~~-~~~ 310 (335)
T KOG0724|consen 292 ALSAPMEEPQWELKAA-AGS 310 (335)
T ss_pred hhhccccccHHHHHhh-ccc
Confidence 9999999999766666 444
No 2
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.46 E-value=4.2e-14 Score=103.47 Aligned_cols=48 Identities=29% Similarity=0.315 Sum_probs=43.7
Q ss_pred EeccccCcHHHHHHHHHHcCC-ch---HHHHh-hhcCC-CHHHHHhHHHHHHHH
Q 024485 6 LVPVFLSRWPYIIMILFRFDR-DW---KKIEA-FIGSK-TVIQIRSHAQKYFLK 53 (267)
Q Consensus 6 ~vp~~~GrW~~FLegL~~yGr-dW---kkIa~-~VgTR-T~~QVrSHAQKYF~K 53 (267)
+++|+.++|.+||+||+.||+ +| ++|++ ++.|+ |..||+|||||||+|
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 467899999999999999999 99 99986 55688 999999999999987
No 3
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.84 E-value=4.4e-09 Score=72.60 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=38.3
Q ss_pred ccccCcHHHHHHHHHHcCCc-hHHHHhhhc-CCCHHHHHhHHHHH
Q 024485 8 PVFLSRWPYIIMILFRFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 50 (267)
Q Consensus 8 p~~~GrW~~FLegL~~yGrd-WkkIa~~Vg-TRT~~QVrSHAQKY 50 (267)
+|+..+-.+|++|+++||.+ |++||++|+ +||..|+++|.++|
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 45566667999999999997 999999999 99999999999987
No 4
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.34 E-value=6.1e-07 Score=58.05 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=38.5
Q ss_pred ccccCcHHHHHHHHHHcC-CchHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 8 PVFLSRWPYIIMILFRFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 8 p~~~GrW~~FLegL~~yG-rdWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
+|+..+-..|+.+++.|| .+|+.|++++++||..||+.|+++++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 355566679999999999 79999999999999999999988764
No 5
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.19 E-value=1.6e-06 Score=56.70 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=38.2
Q ss_pred ccccCcHHHHHHHHHHcC-CchHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 8 PVFLSRWPYIIMILFRFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 8 p~~~GrW~~FLegL~~yG-rdWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
+|+..+=..|++++..|| .+|..|+.++++||+.||+.+..+++
T Consensus 3 ~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 3 EWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 455555579999999999 79999999999999999999988765
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.78 E-value=2e-05 Score=55.92 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=33.8
Q ss_pred ccCcHHHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 10 FLSRWPYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 10 ~~GrW~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
+..+-++.+++.+.||.+|+.||+++|+||+.||+.+..+++
T Consensus 2 T~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 2 TKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHL 43 (60)
T ss_dssp -HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHC
Confidence 344556889999999999999999999999999999988743
No 7
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.96 E-value=0.00085 Score=66.42 Aligned_cols=47 Identities=23% Similarity=0.529 Sum_probs=42.1
Q ss_pred eccccCcHH-----HHHHHHHHcCC-chHHHHhhhcCCCHHHHHhHHHHHHHH
Q 024485 7 VPVFLSRWP-----YIIMILFRFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLK 53 (267)
Q Consensus 7 vp~~~GrW~-----~FLegL~~yGr-dWkkIa~~VgTRT~~QVrSHAQKYF~K 53 (267)
+|.-.+-|+ +||+|++.||= +|..||++|||||..++..|--|+|..
T Consensus 68 ~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 68 FPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN 120 (438)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence 355567885 89999999999 999999999999999999999999974
No 8
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.87 E-value=0.00077 Score=67.53 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHH
Q 024485 15 PYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHA 47 (267)
Q Consensus 15 ~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHA 47 (267)
-+.|||++.||-||.+||.+|||||+.|.--|.
T Consensus 288 ~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~F 320 (531)
T COG5259 288 LLLLEGIEMYGDDWDKVARHVGTKTKEQCILHF 320 (531)
T ss_pred HHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHH
Confidence 489999999999999999999999999998774
No 9
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0012 Score=61.14 Aligned_cols=69 Identities=23% Similarity=0.332 Sum_probs=58.0
Q ss_pred EeccccCcHHHHHHHHHHcCC-chHHHH-hhhcCCCHHHHHhHHH-----HHHHHHHhcCCCCCCCCCCCCCCCCCCCCc
Q 024485 6 LVPVFLSRWPYIIMILFRFDR-DWKKIE-AFIGSKTVIQIRSHAQ-----KYFLKVQKNGTAEHLPPPRPKRKAAHPYPQ 78 (267)
Q Consensus 6 ~vp~~~GrW~~FLegL~~yGr-dWkkIa-~~VgTRT~~QVrSHAQ-----KYF~Kl~k~g~~~~~Pppr~kRks~hp~p~ 78 (267)
++++..+....|+.++..+|+ +|.+|+ .++.+|++.|+.+||| +||.+....+. ..+|+++|+++-
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~~ 236 (335)
T KOG0724|consen 164 GTPVTERERKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSGEE-------EKRRKSIEDITT 236 (335)
T ss_pred cchhHHHHHHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhcc-------ccccchhhhhhc
Confidence 456677777899999999999 999999 8999999999999999 99998866653 567788888775
Q ss_pred ccc
Q 024485 79 KAS 81 (267)
Q Consensus 79 k~~ 81 (267)
...
T Consensus 237 ~~~ 239 (335)
T KOG0724|consen 237 ASE 239 (335)
T ss_pred cch
Confidence 543
No 10
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.19 E-value=0.0038 Score=62.94 Aligned_cols=37 Identities=19% Similarity=0.455 Sum_probs=33.4
Q ss_pred cCcHH-----HHHHHHHHcCCchHHHHhhhcCCCHHHHHhHH
Q 024485 11 LSRWP-----YIIMILFRFDRDWKKIEAFIGSKTVIQIRSHA 47 (267)
Q Consensus 11 ~GrW~-----~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHA 47 (267)
.+.|+ +.|+|+++||-||.+|+.+|||||.-|.-.|.
T Consensus 253 ~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kF 294 (506)
T KOG1279|consen 253 RPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKF 294 (506)
T ss_pred CCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHH
Confidence 35674 89999999999999999999999999998874
No 11
>PLN03091 hypothetical protein; Provisional
Probab=94.98 E-value=0.033 Score=55.71 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=39.5
Q ss_pred ccCcH-----HHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHHHHHh
Q 024485 10 FLSRW-----PYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 56 (267)
Q Consensus 10 ~~GrW-----~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~Kl~k 56 (267)
+.|.| .+.|+..++||..|.+||.++.-||..||+.+.....+|..+
T Consensus 66 kKgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 35666 388999999999999999999999999999988876665433
No 12
>PLN03212 Transcription repressor MYB5; Provisional
Probab=94.86 E-value=0.097 Score=48.94 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=39.0
Q ss_pred ccCcH-----HHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHHHHHh
Q 024485 10 FLSRW-----PYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 56 (267)
Q Consensus 10 ~~GrW-----~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~Kl~k 56 (267)
+.|.| ++.++....||..|.+||.++..||..||+.+...+..|..+
T Consensus 77 ~kgpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHH
Confidence 34566 367888899999999999999999999999998877766543
No 13
>PLN03212 Transcription repressor MYB5; Provisional
Probab=94.82 E-value=0.026 Score=52.69 Aligned_cols=44 Identities=11% Similarity=0.266 Sum_probs=37.5
Q ss_pred cccCcH-----HHHHHHHHHcCC-chHHHHhhhc-CCCHHHHHhHHHHHHH
Q 024485 9 VFLSRW-----PYIIMILFRFDR-DWKKIEAFIG-SKTVIQIRSHAQKYFL 52 (267)
Q Consensus 9 ~~~GrW-----~~FLegL~~yGr-dWkkIa~~Vg-TRT~~QVrSHAQKYF~ 52 (267)
...+.| ++.++++++||. +|+.||+.++ .||..|+|-+..+|+.
T Consensus 23 lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~ 73 (249)
T PLN03212 23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLR 73 (249)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhc
Confidence 456777 378889999997 9999998885 8999999999888874
No 14
>PLN03162 golden-2 like transcription factor; Provisional
Probab=94.75 E-value=0.065 Score=53.25 Aligned_cols=72 Identities=21% Similarity=0.170 Sum_probs=51.1
Q ss_pred EeccccCcHHHHHHHHHHcCC---chHHHHhh--hcCCCHHHHHhHHHHHHHHHHhcCCC-------------CCCCCCC
Q 024485 6 LVPVFLSRWPYIIMILFRFDR---DWKKIEAF--IGSKTVIQIRSHAQKYFLKVQKNGTA-------------EHLPPPR 67 (267)
Q Consensus 6 ~vp~~~GrW~~FLegL~~yGr---dWkkIa~~--VgTRT~~QVrSHAQKYF~Kl~k~g~~-------------~~~Pppr 67 (267)
++.|+.+-|++|++|++..|- -=|+|=++ |.-=|..+|+||-|||...+++.... ...|..|
T Consensus 237 RLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaEa~swt~kr~~~~~P~~r 316 (526)
T PLN03162 237 KVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAEAASWTHRRAYTQAPWPR 316 (526)
T ss_pred cccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhhhccchhhhhhccCCccc
Confidence 466777778899999999994 45677654 45568899999999999987754321 2344456
Q ss_pred CCCCCCCCCC
Q 024485 68 PKRKAAHPYP 77 (267)
Q Consensus 68 ~kRks~hp~p 77 (267)
-.|+..||+-
T Consensus 317 s~~~~g~p~~ 326 (526)
T PLN03162 317 SSRRDGLPYL 326 (526)
T ss_pred CCCCCCCccc
Confidence 5666656554
No 15
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.62 E-value=0.076 Score=51.91 Aligned_cols=46 Identities=28% Similarity=0.538 Sum_probs=40.9
Q ss_pred ccccCcHH-----HHHHHHHHcCC-chHHHHhhhcCCCHHHHHhHHHHHHHH
Q 024485 8 PVFLSRWP-----YIIMILFRFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLK 53 (267)
Q Consensus 8 p~~~GrW~-----~FLegL~~yGr-dWkkIa~~VgTRT~~QVrSHAQKYF~K 53 (267)
|.-.+.|. +|+++++..|- +|..||.|||+|+-..|++|--|||..
T Consensus 60 pI~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~e 111 (432)
T COG5114 60 PIGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDE 111 (432)
T ss_pred cccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence 44456773 89999999999 999999999999999999999999984
No 16
>PLN03091 hypothetical protein; Provisional
Probab=94.11 E-value=0.037 Score=55.40 Aligned_cols=45 Identities=11% Similarity=0.263 Sum_probs=37.7
Q ss_pred ccccCcH-----HHHHHHHHHcCC-chHHHHhhhc-CCCHHHHHhHHHHHHH
Q 024485 8 PVFLSRW-----PYIIMILFRFDR-DWKKIEAFIG-SKTVIQIRSHAQKYFL 52 (267)
Q Consensus 8 p~~~GrW-----~~FLegL~~yGr-dWkkIa~~Vg-TRT~~QVrSHAQKYF~ 52 (267)
....|.| ++.++++++||. +|+.|++.++ .||..|+|-+..+|+.
T Consensus 11 klrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLd 62 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLR 62 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccC
Confidence 4556788 388999999998 9999998886 8999999998776653
No 17
>smart00426 TEA TEA domain.
Probab=90.61 E-value=0.14 Score=39.61 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCC-chHH---------------HHhhhc-----CCCHHHHHhHHH
Q 024485 15 PYIIMILFRFDR-DWKK---------------IEAFIG-----SKTVIQIRSHAQ 48 (267)
Q Consensus 15 ~~FLegL~~yGr-dWkk---------------Ia~~Vg-----TRT~~QVrSHAQ 48 (267)
+.|++||+.|-. .+++ |++||- .||..||.||-|
T Consensus 12 ~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQ 66 (68)
T smart00426 12 QAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ 66 (68)
T ss_pred HHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhe
Confidence 489999999866 3332 455554 699999999987
No 18
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=90.30 E-value=0.36 Score=52.74 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHHcCC-chHHHHhhhcCCCHHHHHhHHHHHHHHH
Q 024485 12 SRWPYIIMILFRFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKV 54 (267)
Q Consensus 12 GrW~~FLegL~~yGr-dWkkIa~~VgTRT~~QVrSHAQKYF~Kl 54 (267)
-....|+.|.++||| +..+||..|..||+.+|+-+|+-|+.+.
T Consensus 830 ~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~ 873 (1033)
T PLN03142 830 RDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERY 873 (1033)
T ss_pred HHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 333599999999999 9999999999999999999998887664
No 19
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=85.10 E-value=0.79 Score=48.58 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=35.0
Q ss_pred ccCcH-----HHHHHHHHHcCC-chHHHHhhhcCCCHHHHHhHHHH
Q 024485 10 FLSRW-----PYIIMILFRFDR-DWKKIEAFIGSKTVIQIRSHAQK 49 (267)
Q Consensus 10 ~~GrW-----~~FLegL~~yGr-dWkkIa~~VgTRT~~QVrSHAQK 49 (267)
..|+| ++.++.+++||. .|-+||.|+|-||-.|.++.--.
T Consensus 411 K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R 456 (939)
T KOG0049|consen 411 KVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLR 456 (939)
T ss_pred ccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHH
Confidence 46899 499999999999 99999999999999998776443
No 20
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=83.24 E-value=1.7 Score=43.48 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=35.3
Q ss_pred ccCcH-----HHHHHHHHHcCC----------------chHHHHhhh-----cCCCHHHHHhHHHHHHHHHHhc
Q 024485 10 FLSRW-----PYIIMILFRFDR----------------DWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQKN 57 (267)
Q Consensus 10 ~~GrW-----~~FLegL~~yGr----------------dWkkIa~~V-----gTRT~~QVrSHAQKYF~Kl~k~ 57 (267)
..|-| +.|+|||..|.. +=.-||.|| .|||-.||.||-|=.=.|..|.
T Consensus 75 aegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~re 148 (455)
T KOG3841|consen 75 AEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLRE 148 (455)
T ss_pred cccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 45778 499999988722 123467777 5899999999999776666554
No 21
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=81.95 E-value=2.2 Score=44.85 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCchHHH----------HhhhcCCCHHHHHhHHHHHHHHHHhcCCCCCCC
Q 024485 15 PYIIMILFRFDRDWKKI----------EAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLP 64 (267)
Q Consensus 15 ~~FLegL~~yGrdWkkI----------a~~VgTRT~~QVrSHAQKYF~Kl~k~g~~~~~P 64 (267)
.-|..||+.||+|+.+| -.-+..||--|||-|+-+-..|+.+.--+++||
T Consensus 97 ~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~F~~~l~ 156 (782)
T KOG4468|consen 97 ESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLLFGPDLS 156 (782)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccC
Confidence 38999999999999999 345778899999998877777776654333343
No 22
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=78.27 E-value=1.7 Score=43.31 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=25.4
Q ss_pred ccCcH-----HHHHHHHHHcCC-chHH-------------HHhhhc-----CCCHHHHHhHHHHH
Q 024485 10 FLSRW-----PYIIMILFRFDR-DWKK-------------IEAFIG-----SKTVIQIRSHAQKY 50 (267)
Q Consensus 10 ~~GrW-----~~FLegL~~yGr-dWkk-------------Ia~~Vg-----TRT~~QVrSHAQKY 50 (267)
..|-| ..|++||++|-. .++| |+.||. +||..||.||.|-.
T Consensus 48 ~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 48 GEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 45677 489999999854 3333 466664 68999999999977
No 23
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=69.94 E-value=3.8 Score=41.26 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCchHHHHhhhcCCCHHHHHh
Q 024485 15 PYIIMILFRFDRDWKKIEAFIGSKTVIQIRS 45 (267)
Q Consensus 15 ~~FLegL~~yGrdWkkIa~~VgTRT~~QVrS 45 (267)
.+|-+||..+|-|+.-|+.+.++|.-.||..
T Consensus 374 ekFYKALs~wGtdF~LIs~lfP~R~RkqIKa 404 (507)
T COG5118 374 EKFYKALSIWGTDFSLISSLFPNRERKQIKA 404 (507)
T ss_pred HHHHHHHHHhcchHHHHHHhcCchhHHHHHH
Confidence 5999999999999999999999999999975
No 24
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=67.69 E-value=3.5 Score=42.49 Aligned_cols=40 Identities=20% Similarity=0.492 Sum_probs=31.2
Q ss_pred ccCcH-----HHHHHHHHHcCCchHHHH-hhhcCCCHHHHHhHHHHHHH
Q 024485 10 FLSRW-----PYIIMILFRFDRDWKKIE-AFIGSKTVIQIRSHAQKYFL 52 (267)
Q Consensus 10 ~~GrW-----~~FLegL~~yGrdWkkIa-~~VgTRT~~QVrSHAQKYF~ 52 (267)
.-++| .+|-|||++||+|+..|- +|++=|+.+ |-.+=||+
T Consensus 284 emEEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~---sIveyYYm 329 (693)
T KOG3554|consen 284 EMEEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLT---SIVEYYYM 329 (693)
T ss_pred hhhhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHH---HHHHHHHH
Confidence 34678 499999999999999997 899977654 44555665
No 25
>PF10141 ssDNA-exonuc_C: Single-strand DNA-specific exonuclease, C terminal domain; InterPro: IPR018779 This entry represents a domain found at the C terminus of a set of single-stranded DNA-specific exonucleases, including RecJ. Its function has not, as yet, been determined.
Probab=64.95 E-value=7.3 Score=34.25 Aligned_cols=46 Identities=20% Similarity=0.390 Sum_probs=34.1
Q ss_pred CCcCCCC---hHHHhhhhhcccCCCchhHHHHhhcCCcchHHHHHHHHH
Q 024485 180 PLRVLPD---FAQVYTFIGSVFDPNASDHVQKLKKMDPIDVETVLLLMR 225 (267)
Q Consensus 180 ~l~~~Pd---FaqVY~FiGsvFDp~~~~hlqkLk~MDPId~ETvLLLMr 225 (267)
.+..+|+ |+++|+||-..=.-+...|++.|-.-==|+.+++..+++
T Consensus 90 y~~~~P~Re~F~~~Y~~l~~~~~~~l~~~~~~La~~l~i~~~~l~fml~ 138 (195)
T PF10141_consen 90 YFEGMPTREQFKKLYKFLKQHPNFDLKEQLQALAKYLGISPDTLKFMLK 138 (195)
T ss_pred hhcCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4567885 999999998852223467888886666688888877765
No 26
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=62.79 E-value=10 Score=40.67 Aligned_cols=38 Identities=21% Similarity=0.494 Sum_probs=33.8
Q ss_pred ccCcHH-----HHHHHHHHcCC-chHHHHhhhcCCCHHHHHhHH
Q 024485 10 FLSRWP-----YIIMILFRFDR-DWKKIEAFIGSKTVIQIRSHA 47 (267)
Q Consensus 10 ~~GrW~-----~FLegL~~yGr-dWkkIa~~VgTRT~~QVrSHA 47 (267)
..|+|+ +.+.|+.+||. ||-+|-+.|+.|+-.|.|..-
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY 402 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERY 402 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHH
Confidence 457884 88999999998 999999999999999999863
No 27
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=62.39 E-value=4.8 Score=40.26 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCchHHHH-hhhcCCCHHHHH
Q 024485 15 PYIIMILFRFDRDWKKIE-AFIGSKTVIQIR 44 (267)
Q Consensus 15 ~~FLegL~~yGrdWkkIa-~~VgTRT~~QVr 44 (267)
..|-+||+.||||+-.|. .-|.||++...-
T Consensus 286 r~FEegl~~yGKDF~lIr~nkvrtRsvgElV 316 (445)
T KOG4329|consen 286 RNFEEGLELYGKDFHLIRANKVRTRSVGELV 316 (445)
T ss_pred HHHHHHHHHhcccHHHHHhcccccchHHHHH
Confidence 599999999999999998 799999988764
No 28
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=58.51 E-value=17 Score=32.87 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 16 YIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 16 ~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
.-+++=.+||-+|..||.+++-||--.|..|.-=..
T Consensus 72 ~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~l 107 (238)
T KOG0048|consen 72 LIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHL 107 (238)
T ss_pred HHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHH
Confidence 788888999999999999999999999988864443
No 29
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=55.54 E-value=9.5 Score=34.48 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=37.9
Q ss_pred eccccCcHHHHHHHHHHcCC-chHHHHhhhc-CCCHHHHHhHHHHHHH
Q 024485 7 VPVFLSRWPYIIMILFRFDR-DWKKIEAFIG-SKTVIQIRSHAQKYFL 52 (267)
Q Consensus 7 vp~~~GrW~~FLegL~~yGr-dWkkIa~~Vg-TRT~~QVrSHAQKYF~ 52 (267)
.||..++=.+..+-++.||. .|..|++..| -|+-.|+|-..=.|..
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLr 57 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLR 57 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccC
Confidence 44444444689999999999 8999999999 9999999988777754
No 30
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=47.89 E-value=14 Score=39.96 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCchHHHHhhhcCCCHHHHH
Q 024485 15 PYIIMILFRFDRDWKKIEAFIGSKTVIQIR 44 (267)
Q Consensus 15 ~~FLegL~~yGrdWkkIa~~VgTRT~~QVr 44 (267)
.+|-+||-.|.||+.+|++.|.|||+.|..
T Consensus 628 ~lF~kA~y~~~KDF~~v~km~~~KtVaqCV 657 (907)
T KOG4167|consen 628 KLFNKALYTYSKDFIFVQKMVKSKTVAQCV 657 (907)
T ss_pred HHHHHHHHHhcccHHHHHHHhccccHHHHH
Confidence 399999999999999999999999999974
No 31
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=37.52 E-value=33 Score=24.42 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=23.7
Q ss_pred ccCcHHHHHHHHHHcCCchHHHHhhhcC
Q 024485 10 FLSRWPYIIMILFRFDRDWKKIEAFIGS 37 (267)
Q Consensus 10 ~~GrW~~FLegL~~yGrdWkkIa~~VgT 37 (267)
..+++++|...|+.-.-.++-|++|+|-
T Consensus 17 ~~~~~d~F~~~L~~s~D~F~vIaeyfGr 44 (49)
T PF12451_consen 17 SADQHDLFFKQLEESEDRFSVIAEYFGR 44 (49)
T ss_pred HhhcHHHHHHHHHhCCCCchhHHHHHcc
Confidence 3578899999997777799999999983
No 32
>PHA00442 host recBCD nuclease inhibitor
Probab=30.97 E-value=42 Score=25.41 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=16.5
Q ss_pred HHHHHHHHcCC-chHHHHh
Q 024485 16 YIIMILFRFDR-DWKKIEA 33 (267)
Q Consensus 16 ~FLegL~~yGr-dWkkIa~ 33 (267)
.||++|+..|- +|..+.+
T Consensus 30 ~~L~~Lea~GVDNW~Gy~e 48 (59)
T PHA00442 30 EFLKALRACGVDNWDGYMD 48 (59)
T ss_pred HHHHHHHHcCCcchhhHHH
Confidence 89999999999 9999873
No 33
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=30.16 E-value=80 Score=33.21 Aligned_cols=44 Identities=14% Similarity=0.440 Sum_probs=36.1
Q ss_pred cccCcHH-----HHHHHHHHcCC-chHHHHhhhcCCCHHHHHhHHHHHHH
Q 024485 9 VFLSRWP-----YIIMILFRFDR-DWKKIEAFIGSKTVIQIRSHAQKYFL 52 (267)
Q Consensus 9 ~~~GrW~-----~FLegL~~yGr-dWkkIa~~VgTRT~~QVrSHAQKYF~ 52 (267)
...|-|+ -.--|..+||+ .|.+|+.....+|+.|.....-+|..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ld 54 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLD 54 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhC
Confidence 4456673 34457899999 99999999999999999998888765
No 34
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=26.04 E-value=85 Score=32.49 Aligned_cols=52 Identities=23% Similarity=0.492 Sum_probs=40.7
Q ss_pred ccCCCchhHHHHhhcCCcchHHH--HHHHHHHhhhcCCCcchHHHHHHhhhccC
Q 024485 197 VFDPNASDHVQKLKKMDPIDVET--VLLLMRNLSINLTSPDFEDHRRLLSSYEI 248 (267)
Q Consensus 197 vFDp~~~~hlqkLk~MDPId~ET--vLLLMrNLsiNL~sp~fe~~~~llssy~~ 248 (267)
+|-++.+.=+.+|.+|||++.-| +=-+.=+++.|+-.|+|.+-...|..|..
T Consensus 243 lf~~~~s~L~~~i~~~DP~~~r~~~iD~fIl~~~l~i~d~~~~~f~~~l~~~g~ 296 (504)
T TIGR03238 243 LFSKERSELLKFLHELDPVHRRTSKIDQFIIDLSLNLPDQEFNEFKTVLNRLGC 296 (504)
T ss_pred CCCccccHHHHHhhhcCchhhcchhHhHHHHHhhccCCchhHHHHHHHHHhccc
Confidence 34457788999999999999866 33345566899999999998888887653
No 35
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=25.11 E-value=2.1e+02 Score=21.51 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=26.9
Q ss_pred HcCCchHHHHhhhcCCCHHHHHhHHHHHHHHHHh
Q 024485 23 RFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 56 (267)
Q Consensus 23 ~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~Kl~k 56 (267)
..|..++.||+..|. |+..|+.+-++-..|+++
T Consensus 124 ~~g~s~~eIA~~l~~-s~~~v~~~~~~~~~kl~~ 156 (158)
T TIGR02937 124 LEGLSYKEIAEILGI-SVGTVKRRLKRARKKLRE 156 (158)
T ss_pred hcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHh
Confidence 457799999988887 788888888888887764
No 36
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=22.47 E-value=1.4e+02 Score=20.89 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHHHH
Q 024485 16 YIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 54 (267)
Q Consensus 16 ~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~Kl 54 (267)
.+-+|++..|.|=..+-+.+.||+..|++-=++.|..+-
T Consensus 5 ~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~ 43 (66)
T PF00191_consen 5 LLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKY 43 (66)
T ss_dssp HHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhh
Confidence 455778888887667778899999999999999887765
No 37
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=22.27 E-value=2.3e+02 Score=19.15 Aligned_cols=36 Identities=11% Similarity=0.247 Sum_probs=22.7
Q ss_pred HHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHHH
Q 024485 17 IIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLK 53 (267)
Q Consensus 17 FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~K 53 (267)
-+.-....|.+|+.||+..| .|+..|+.|-++=..+
T Consensus 18 i~~l~~~~g~s~~eIa~~l~-~s~~~v~~~l~ra~~~ 53 (54)
T PF08281_consen 18 IFLLRYFQGMSYAEIAEILG-ISESTVKRRLRRARKK 53 (54)
T ss_dssp HHHHHHTS---HHHHHHHCT-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHC-cCHHHHHHHHHHHHhh
Confidence 33334556779999999887 7788888887765544
No 38
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=22.03 E-value=2.7e+02 Score=22.79 Aligned_cols=62 Identities=24% Similarity=0.385 Sum_probs=48.2
Q ss_pred ChHHHhhhhhcccCCCchhHHHHh-hcCCc-----chHHHHHHHHHHhhhcCCCc--chHHHHHHhhhccCCc
Q 024485 186 DFAQVYTFIGSVFDPNASDHVQKL-KKMDP-----IDVETVLLLMRNLSINLTSP--DFEDHRRLLSSYEIDP 250 (267)
Q Consensus 186 dFaqVY~FiGsvFDp~~~~hlqkL-k~MDP-----Id~ETvLLLMrNLsiNL~sp--~fe~~~~llssy~~~~ 250 (267)
.+..+.+.+|.- -++.+++.+ ++.|+ |+++..+-||..+..+.... .-|..+..+.-||.+.
T Consensus 29 el~~~lr~lg~~---~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~ 98 (151)
T KOG0027|consen 29 ELGAVLRSLGQN---PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDG 98 (151)
T ss_pred HHHHHHHHcCCC---CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCC
Confidence 477777777765 456677664 77774 99999999999988888776 3667888888888774
No 39
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=20.67 E-value=1.5e+02 Score=30.86 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCchHHHHhhhcCCCHHH
Q 024485 16 YIIMILFRFDRDWKKIEAFIGSKTVIQ 42 (267)
Q Consensus 16 ~FLegL~~yGrdWkkIa~~VgTRT~~Q 42 (267)
+|-.+++.||+++.+|-+.+.-|+..-
T Consensus 197 lFe~aF~~~GK~F~kIrq~LP~rsLaS 223 (534)
T KOG1194|consen 197 LFEQAFQFFGKDFHKIRQALPHRSLAS 223 (534)
T ss_pred HHHHHHHHhcccHHHHHHHccCccHHH
Confidence 999999999999999998888887543
No 40
>cd08312 Death_MyD88 Death domain of Myeloid Differentation primary response protein MyD88. Death Domain (DD) of Myeloid Differentiation primary response protein 88 (MyD88). MyD88 is an adaptor protein involved in interleukin-1 receptor (IL-1R)- and Toll-like receptor (TLR)-induced activation of nuclear factor-kappaB (NF-kB) and mitogen activated protein kinase pathways that lead to the induction of proinflammatory cytokines. It is a key component in the signaling pathway of pathogen recognition in the innate immune system. MyD88 contains an N-terminal DD and a C-terminal Toll/IL-1 Receptor (TIR) homology domain that mediates interaction with TLRs and IL-1R. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and
Probab=20.11 E-value=56 Score=25.01 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=15.1
Q ss_pred HHcCCchHHHHhhhcCCCHHHH
Q 024485 22 FRFDRDWKKIEAFIGSKTVIQI 43 (267)
Q Consensus 22 ~~yGrdWkkIa~~VgTRT~~QV 43 (267)
..+|+||+.+|+.+|= +...|
T Consensus 13 ~~~g~DWr~LA~~Lg~-~~~~I 33 (79)
T cd08312 13 RVVAADWTALAEEMGF-EYLEI 33 (79)
T ss_pred CCcccCHHHHHHHcCC-CHHHH
Confidence 4578999999988883 33344
No 41
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=20.02 E-value=1.9e+02 Score=27.49 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=47.2
Q ss_pred eEEEecccc-CcH-HHHHHHHHHcCCchHHHH-hhhcCCCH--HHHHhHHHHHHHHHHhcC
Q 024485 3 ILILVPVFL-SRW-PYIIMILFRFDRDWKKIE-AFIGSKTV--IQIRSHAQKYFLKVQKNG 58 (267)
Q Consensus 3 ~~~~vp~~~-GrW-~~FLegL~~yGrdWkkIa-~~VgTRT~--~QVrSHAQKYF~Kl~k~g 58 (267)
|||++|... .+| ..|++-|..+..+=..|+ .|+-.+|. -.+...-+.++.++++.+
T Consensus 27 VLILtplrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~ 87 (269)
T PF03452_consen 27 VLILTPLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHG 87 (269)
T ss_pred EEEEEecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccC
Confidence 677788744 444 799999999988888999 99999999 999999999999998744
Done!