Query 024485
Match_columns 267
No_of_seqs 191 out of 460
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 09:01:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.3 7.3E-12 2.5E-16 92.5 6.4 60 8-74 11-70 (72)
2 2yum_A ZZZ3 protein, zinc fing 99.2 1.4E-11 4.7E-16 91.1 4.2 56 8-65 10-71 (75)
3 2yus_A SWI/SNF-related matrix- 98.9 3.4E-10 1.2E-14 86.1 2.4 45 8-52 20-64 (79)
4 2xag_B REST corepressor 1; ami 98.8 7.9E-10 2.7E-14 108.0 2.2 49 7-55 381-429 (482)
5 1irz_A ARR10-B; helix-turn-hel 98.8 5.5E-09 1.9E-13 77.6 5.1 52 6-57 7-63 (64)
6 2elk_A SPCC24B10.08C protein; 98.8 3.3E-09 1.1E-13 75.6 3.5 46 7-52 5-57 (58)
7 2iw5_B Protein corest, REST co 98.8 2E-09 6.9E-14 97.0 2.5 46 9-54 136-181 (235)
8 1x41_A Transcriptional adaptor 98.6 2.5E-08 8.4E-13 71.3 4.3 43 10-52 12-55 (60)
9 2eqr_A N-COR1, N-COR, nuclear 98.6 2.5E-08 8.4E-13 71.8 3.6 46 6-54 12-57 (61)
10 2ltp_A Nuclear receptor corepr 97.6 7.5E-08 2.6E-12 74.1 0.0 49 9-57 14-67 (89)
11 2yqk_A Arginine-glutamic acid 98.3 3.1E-07 1.1E-11 66.7 3.2 44 7-53 10-54 (63)
12 1guu_A C-MYB, MYB proto-oncoge 98.3 8.6E-07 3E-11 61.0 4.4 44 8-51 5-49 (52)
13 2din_A Cell division cycle 5-l 98.2 2.6E-06 8.7E-11 61.4 6.0 44 15-59 18-61 (66)
14 2cqq_A RSGI RUH-037, DNAJ homo 98.2 1.9E-06 6.4E-11 64.6 5.3 43 10-53 12-58 (72)
15 2crg_A Metastasis associated p 98.2 1.2E-06 4.3E-11 64.9 3.8 40 7-46 9-49 (70)
16 1gvd_A MYB proto-oncogene prot 98.1 1.3E-06 4.5E-11 60.2 2.9 44 8-51 5-49 (52)
17 2cqr_A RSGI RUH-043, DNAJ homo 98.1 1.7E-06 5.9E-11 65.0 3.6 42 10-51 17-67 (73)
18 2cjj_A Radialis; plant develop 98.1 2.4E-06 8.2E-11 67.0 4.5 51 15-66 17-71 (93)
19 2d9a_A B-MYB, MYB-related prot 98.1 2.2E-06 7.6E-11 60.6 3.5 37 15-51 17-54 (60)
20 2k9n_A MYB24; R2R3 domain, DNA 98.0 1.1E-05 3.8E-10 62.8 5.9 44 15-58 62-105 (107)
21 1wgx_A KIAA1903 protein; MYB D 97.9 4.9E-06 1.7E-10 63.0 3.6 36 15-50 17-56 (73)
22 2dim_A Cell division cycle 5-l 97.8 1.1E-05 3.9E-10 58.6 3.6 44 9-52 7-56 (70)
23 1w0t_A Telomeric repeat bindin 97.7 3.4E-05 1.2E-09 53.4 4.4 44 8-51 4-50 (53)
24 3osg_A MYB21; transcription-DN 97.7 2.7E-05 9.1E-10 62.4 4.3 40 15-54 71-110 (126)
25 4a69_C Nuclear receptor corepr 97.7 2.4E-05 8.1E-10 61.1 3.8 39 8-46 45-83 (94)
26 4eef_G F-HB80.4, designed hema 97.7 8.9E-06 3.1E-10 62.1 1.1 40 9-48 23-66 (74)
27 3zqc_A MYB3; transcription-DNA 97.7 2.5E-05 8.5E-10 62.9 3.8 43 15-57 63-105 (131)
28 1gv2_A C-MYB, MYB proto-oncoge 97.7 2.1E-05 7.1E-10 60.6 3.1 37 15-51 65-101 (105)
29 1ity_A TRF1; helix-turn-helix, 97.6 5.7E-05 2E-09 54.8 4.7 38 15-52 19-59 (69)
30 1gv2_A C-MYB, MYB proto-oncoge 97.5 4E-05 1.4E-09 59.0 2.8 44 8-51 6-50 (105)
31 3osg_A MYB21; transcription-DN 97.5 5.1E-05 1.7E-09 60.8 3.2 44 8-51 8-56 (126)
32 2k9n_A MYB24; R2R3 domain, DNA 97.4 8.7E-05 3E-09 57.7 3.7 43 9-51 4-47 (107)
33 3zqc_A MYB3; transcription-DNA 97.4 6.6E-05 2.2E-09 60.4 2.7 45 7-51 3-48 (131)
34 1h8a_C AMV V-MYB, MYB transfor 97.4 5.4E-05 1.8E-09 60.4 2.0 38 13-50 86-123 (128)
35 3sjm_A Telomeric repeat-bindin 97.3 0.00024 8.4E-09 51.6 4.7 36 15-50 20-58 (64)
36 1h8a_C AMV V-MYB, MYB transfor 97.2 0.00021 7.1E-09 57.0 3.8 42 10-51 26-73 (128)
37 1h89_C C-MYB, MYB proto-oncoge 97.2 0.00011 3.9E-09 60.4 1.6 42 9-50 113-154 (159)
38 2llk_A Cyclin-D-binding MYB-li 97.1 0.00039 1.3E-08 52.2 3.9 33 15-48 32-64 (73)
39 2ckx_A NGTRF1, telomere bindin 97.0 0.0008 2.7E-08 51.6 4.8 48 8-55 2-54 (83)
40 1ofc_X ISWI protein; nuclear p 96.7 0.001 3.4E-08 61.8 4.2 46 9-54 113-159 (304)
41 1h89_C C-MYB, MYB proto-oncoge 96.7 0.001 3.5E-08 54.7 3.4 37 15-51 67-104 (159)
42 2aje_A Telomere repeat-binding 96.1 0.0044 1.5E-07 49.5 3.8 45 9-53 16-65 (105)
43 1x58_A Hypothetical protein 49 95.7 0.0067 2.3E-07 44.8 2.9 38 9-46 11-51 (62)
44 2roh_A RTBP1, telomere binding 95.6 0.014 4.7E-07 47.9 4.9 47 9-55 29-85 (122)
45 2juh_A Telomere binding protei 95.2 0.016 5.6E-07 47.4 4.1 46 9-54 15-70 (121)
46 2y9y_A Imitation switch protei 94.1 0.033 1.1E-06 53.1 3.8 46 9-54 126-173 (374)
47 1ign_A Protein (RAP1); RAP1,ye 92.7 0.042 1.4E-06 49.9 2.0 44 10-53 7-61 (246)
48 2xag_B REST corepressor 1; ami 91.4 0.036 1.2E-06 54.4 0.0 35 12-46 195-229 (482)
49 2hzd_A Transcriptional enhance 88.4 0.28 9.7E-06 37.9 2.8 43 11-53 6-74 (82)
50 1ofc_X ISWI protein; nuclear p 78.0 2.3 7.8E-05 39.4 4.8 46 12-57 218-279 (304)
51 4b4c_A Chromodomain-helicase-D 76.3 2.6 8.9E-05 35.3 4.3 44 13-56 14-62 (211)
52 1ig6_A MRF-2, modulator recogn 76.0 2.1 7.2E-05 33.1 3.4 45 26-70 55-107 (107)
53 3hm5_A DNA methyltransferase 1 69.0 9.4 0.00032 29.8 5.6 43 15-57 39-86 (93)
54 1ug2_A 2610100B20RIK gene prod 56.1 22 0.00074 28.2 5.5 51 7-57 34-87 (95)
55 2kz2_A Calmodulin, CAM; TR2C, 39.1 78 0.0027 22.3 5.9 33 215-250 46-78 (94)
56 3i5g_C Myosin catalytic light 33.8 1.1E+02 0.0039 23.6 6.6 61 186-249 32-97 (159)
57 2cxy_A BAF250B subunit, HBAF25 27.6 40 0.0014 26.6 2.9 44 14-57 54-108 (125)
58 1fex_A TRF2-interacting telome 26.9 53 0.0018 23.0 3.2 36 16-51 12-57 (59)
59 1b0n_B Protein (SINI protein); 25.3 53 0.0018 23.4 2.9 40 11-50 12-56 (57)
60 3oq2_A Crispr-associated prote 23.5 20 0.0007 27.6 0.5 38 12-50 25-62 (103)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.26 E-value=7.3e-12 Score=92.47 Aligned_cols=60 Identities=30% Similarity=0.449 Sum_probs=50.9
Q ss_pred ccccCcHHHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 024485 8 PVFLSRWPYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPPPRPKRKAAH 74 (267)
Q Consensus 8 p~~~GrW~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~Kl~k~g~~~~~Pppr~kRks~h 74 (267)
||..++-.+|++++++||.+|..||++|++||..||+.|+++||.+..+.|. .+.+.++|
T Consensus 11 ~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g~-------~~~~~si~ 70 (72)
T 2cu7_A 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL-------DKETPNQK 70 (72)
T ss_dssp CCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCT-------TCCCSCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCC-------CCCccccc
Confidence 4555555699999999999999999999999999999999999999987764 34555666
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.4e-11 Score=91.14 Aligned_cols=56 Identities=29% Similarity=0.513 Sum_probs=48.1
Q ss_pred ccccCcHHHHHHHHHHcC------CchHHHHhhhcCCCHHHHHhHHHHHHHHHHhcCCCCCCCC
Q 024485 8 PVFLSRWPYIIMILFRFD------RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPP 65 (267)
Q Consensus 8 p~~~GrW~~FLegL~~yG------rdWkkIa~~VgTRT~~QVrSHAQKYF~Kl~k~g~~~~~Pp 65 (267)
+|+.++-.+|+++++.|| .+|.+||++|++||..||+.|+||||.++.+.|. .+|.
T Consensus 10 ~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~--~~pg 71 (75)
T 2yum_A 10 LWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI--PVSG 71 (75)
T ss_dssp CCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS--CCCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC--CCCC
Confidence 445555569999999999 7999999999999999999999999999988774 4554
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.91 E-value=3.4e-10 Score=86.09 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=39.3
Q ss_pred ccccCcHHHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHH
Q 024485 8 PVFLSRWPYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFL 52 (267)
Q Consensus 8 p~~~GrW~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~ 52 (267)
+|+..+-.+||+|+++||.+|++||++|+|||..||+.|.++|+.
T Consensus 20 ~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 20 EWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI 64 (79)
T ss_dssp CCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCC
T ss_pred CcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 444555569999999999999999999999999999999987743
No 4
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.83 E-value=7.9e-10 Score=107.96 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=42.3
Q ss_pred eccccCcHHHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHHHHH
Q 024485 7 VPVFLSRWPYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 55 (267)
Q Consensus 7 vp~~~GrW~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~Kl~ 55 (267)
.+|...+..+|++||++|||||+.|+++|||||+.||++|.++|+.++.
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhC
Confidence 3444555569999999999999999999999999999999999887653
No 5
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=98.79 E-value=5.5e-09 Score=77.64 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=45.4
Q ss_pred EeccccCcHHHHHHHHHHcCCc---hHHHHhhhc--CCCHHHHHhHHHHHHHHHHhc
Q 024485 6 LVPVFLSRWPYIIMILFRFDRD---WKKIEAFIG--SKTVIQIRSHAQKYFLKVQKN 57 (267)
Q Consensus 6 ~vp~~~GrW~~FLegL~~yGrd---WkkIa~~Vg--TRT~~QVrSHAQKYF~Kl~k~ 57 (267)
.+.|..+.|++|++|++.+|.+ ||+|-++++ ..|..||+||.|||+.+++|.
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 4678888889999999999974 899998766 459999999999999999864
No 6
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.78 E-value=3.3e-09 Score=75.63 Aligned_cols=46 Identities=22% Similarity=0.465 Sum_probs=40.5
Q ss_pred eccccCcH-----HHHHHHHHHcC-CchHHHHhhhc-CCCHHHHHhHHHHHHH
Q 024485 7 VPVFLSRW-----PYIIMILFRFD-RDWKKIEAFIG-SKTVIQIRSHAQKYFL 52 (267)
Q Consensus 7 vp~~~GrW-----~~FLegL~~yG-rdWkkIa~~Vg-TRT~~QVrSHAQKYF~ 52 (267)
+|...+.| .++++++++|| .+|++||++|+ +||..|++.|.++||.
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 34555666 59999999999 69999999999 9999999999999985
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.76 E-value=2e-09 Score=96.95 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=40.3
Q ss_pred cccCcHHHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHHHH
Q 024485 9 VFLSRWPYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 54 (267)
Q Consensus 9 ~~~GrW~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~Kl 54 (267)
|..++...|++||++||+||..||++|+|||+.||++|.++|+.|+
T Consensus 136 WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 136 WTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 3334445999999999999999999999999999999999998774
No 8
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.63 E-value=2.5e-08 Score=71.27 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=37.6
Q ss_pred ccCcHHHHHHHHHHcC-CchHHHHhhhcCCCHHHHHhHHHHHHH
Q 024485 10 FLSRWPYIIMILFRFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 52 (267)
Q Consensus 10 ~~GrW~~FLegL~~yG-rdWkkIa~~VgTRT~~QVrSHAQKYF~ 52 (267)
+.++=.+++++++.|| .+|++||++|++||..|++.|.++|+.
T Consensus 12 T~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 12 TAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 3333359999999999 599999999999999999999999875
No 9
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.5e-08 Score=71.84 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=39.7
Q ss_pred EeccccCcHHHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHHHH
Q 024485 6 LVPVFLSRWPYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 54 (267)
Q Consensus 6 ~vp~~~GrW~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~Kl 54 (267)
..||+..+..+|++|+.+||++|.+||++|++||+.||+-| ||+..
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~---Yy~~K 57 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLY---YYLTK 57 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHH---HHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHH---HHHhc
Confidence 45777788889999999999999999999999999999744 66543
No 10
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.65 E-value=7.5e-08 Score=74.06 Aligned_cols=49 Identities=24% Similarity=0.456 Sum_probs=42.7
Q ss_pred cccCcH-----HHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHHHHHhc
Q 024485 9 VFLSRW-----PYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 57 (267)
Q Consensus 9 ~~~GrW-----~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~Kl~k~ 57 (267)
.+.|.| .+|+++++.||.+|..||.+|++||..||+.|.+.|..++...
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~ 67 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLD 67 (89)
Confidence 345666 4999999999999999999999999999999999998876543
No 11
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=3.1e-07 Score=66.72 Aligned_cols=44 Identities=9% Similarity=0.093 Sum_probs=37.7
Q ss_pred eccccCcHHHHHHHHHHcCCchHHHHh-hhcCCCHHHHHhHHHHHHHH
Q 024485 7 VPVFLSRWPYIIMILFRFDRDWKKIEA-FIGSKTVIQIRSHAQKYFLK 53 (267)
Q Consensus 7 vp~~~GrW~~FLegL~~yGrdWkkIa~-~VgTRT~~QVrSHAQKYF~K 53 (267)
.+|...+..+|++||.+||++|.+|+. +|+|||+.||. +-||.-
T Consensus 10 ~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v---~fYY~w 54 (63)
T 2yqk_A 10 KCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELI---TFYYYW 54 (63)
T ss_dssp CSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHH---HHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHH---HHHhcc
Confidence 466777778999999999999999997 89999999996 556653
No 12
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.26 E-value=8.6e-07 Score=60.96 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=38.1
Q ss_pred ccccCcHHHHHHHHHHcCC-chHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 8 PVFLSRWPYIIMILFRFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 8 p~~~GrW~~FLegL~~yGr-dWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
+|+.++=.+++++++.||. +|..||+++++||..|++.|.++|+
T Consensus 5 ~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 5 RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 3344444699999999999 9999999999999999999998886
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=2.6e-06 Score=61.45 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHHHHHhcCC
Q 024485 15 PYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 59 (267)
Q Consensus 15 ~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~Kl~k~g~ 59 (267)
.+++++.+.||.+|.+||+++| ||..||+.|.++|+.+..+.+.
T Consensus 18 ~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 18 EKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 5899999999999999999666 9999999999999998877664
No 14
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.19 E-value=1.9e-06 Score=64.61 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=35.4
Q ss_pred ccCcHHHHHHHHHHcCC----chHHHHhhhcCCCHHHHHhHHHHHHHH
Q 024485 10 FLSRWPYIIMILFRFDR----DWKKIEAFIGSKTVIQIRSHAQKYFLK 53 (267)
Q Consensus 10 ~~GrW~~FLegL~~yGr----dWkkIa~~VgTRT~~QVrSHAQKYF~K 53 (267)
+..+-.+|.++|.+|+. +|.+||+++| ||+.||+.|++++-..
T Consensus 12 T~eE~k~fe~al~~~p~~t~~RW~~IA~~lg-Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 12 TEEDLSQLTRSMVKFPGGTPGRWEKIAHELG-RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT-SCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC-CCHHHHHHHHHHHHHh
Confidence 33333599999999984 7999999995 9999999998887544
No 15
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.16 E-value=1.2e-06 Score=64.92 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=34.8
Q ss_pred eccccCcHHHHHHHHHHcCCchHHHHh-hhcCCCHHHHHhH
Q 024485 7 VPVFLSRWPYIIMILFRFDRDWKKIEA-FIGSKTVIQIRSH 46 (267)
Q Consensus 7 vp~~~GrW~~FLegL~~yGrdWkkIa~-~VgTRT~~QVrSH 46 (267)
-+|+..+..+|++||.+||+||..|+. +|+|||+.||..+
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f 49 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEY 49 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHH
Confidence 356666667999999999999999998 8999999999854
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.11 E-value=1.3e-06 Score=60.16 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=37.8
Q ss_pred ccccCcHHHHHHHHHHcCC-chHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 8 PVFLSRWPYIIMILFRFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 8 p~~~GrW~~FLegL~~yGr-dWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
||+.++=.+++++++.||. +|..||++++.||..|++.|.++|+
T Consensus 5 ~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 5 PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4444444699999999998 8999999999999999999988774
No 17
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.10 E-value=1.7e-06 Score=65.03 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=36.5
Q ss_pred ccCcH-----HHHHHHHHHcC----CchHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 10 FLSRW-----PYIIMILFRFD----RDWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 10 ~~GrW-----~~FLegL~~yG----rdWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
+.+.| .+|++||+.|| .+|.+||++|+.||..||+.|.+++.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 44667 49999999999 48999999999999999999987653
No 18
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.10 E-value=2.4e-06 Score=66.97 Aligned_cols=51 Identities=14% Similarity=0.278 Sum_probs=41.2
Q ss_pred HHHHHHHHHcC----CchHHHHhhhcCCCHHHHHhHHHHHHHHHHhcCCCCCCCCC
Q 024485 15 PYIIMILFRFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTAEHLPPP 66 (267)
Q Consensus 15 ~~FLegL~~yG----rdWkkIa~~VgTRT~~QVrSHAQKYF~Kl~k~g~~~~~Ppp 66 (267)
.+|+++|..|| .+|.+||++|+.||..||+.|.+++..++..... ..+|-|
T Consensus 17 ~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ies-g~vp~P 71 (93)
T 2cjj_A 17 KAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES-GKVPFP 71 (93)
T ss_dssp HHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHH-SSCCC-
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhc-CCCCCC
Confidence 59999999997 4799999999999999999999999988744321 235544
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.07 E-value=2.2e-06 Score=60.58 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=34.3
Q ss_pred HHHHHHHHHcC-CchHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 15 PYIIMILFRFD-RDWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 15 ~~FLegL~~yG-rdWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
.+++++++.|| .+|..||++++.||..|++.|.++|+
T Consensus 17 ~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 17 EQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 59999999999 59999999999999999999988774
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.96 E-value=1.1e-05 Score=62.82 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHHHHHhcC
Q 024485 15 PYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNG 58 (267)
Q Consensus 15 ~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~Kl~k~g 58 (267)
.++++++..||.+|..||+++++||..||+.|...+..++.+..
T Consensus 62 ~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 62 MLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 58999999999999999999999999999999999888876543
No 21
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.95 E-value=4.9e-06 Score=63.02 Aligned_cols=36 Identities=11% Similarity=0.233 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCC----chHHHHhhhcCCCHHHHHhHHHHH
Q 024485 15 PYIIMILFRFDR----DWKKIEAFIGSKTVIQIRSHAQKY 50 (267)
Q Consensus 15 ~~FLegL~~yGr----dWkkIa~~VgTRT~~QVrSHAQKY 50 (267)
.+|.+||..|++ +|.+||++||+||+.||+-|.+..
T Consensus 17 k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 17 QKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp HHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 599999999997 599999999999999999776543
No 22
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=1.1e-05 Score=58.64 Aligned_cols=44 Identities=11% Similarity=0.335 Sum_probs=38.1
Q ss_pred cccCcH-----HHHHHHHHHcC-CchHHHHhhhcCCCHHHHHhHHHHHHH
Q 024485 9 VFLSRW-----PYIIMILFRFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 52 (267)
Q Consensus 9 ~~~GrW-----~~FLegL~~yG-rdWkkIa~~VgTRT~~QVrSHAQKYF~ 52 (267)
.+.|.| .+++++++.|| .+|..||.++++||..|++.|.++|+.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 345677 48999999999 599999999999999999999887753
No 23
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.71 E-value=3.4e-05 Score=53.39 Aligned_cols=44 Identities=9% Similarity=0.153 Sum_probs=37.2
Q ss_pred ccccCcHHHHHHHHHHcCC-chHHHHhhhc--CCCHHHHHhHHHHHH
Q 024485 8 PVFLSRWPYIIMILFRFDR-DWKKIEAFIG--SKTVIQIRSHAQKYF 51 (267)
Q Consensus 8 p~~~GrW~~FLegL~~yGr-dWkkIa~~Vg--TRT~~QVrSHAQKYF 51 (267)
||+..+=++++++++.||. +|..|+++++ .||..|++.+-..|.
T Consensus 4 ~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 4 AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4444455689999999995 9999999999 999999999887764
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.71 E-value=2.7e-05 Score=62.41 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHHHH
Q 024485 15 PYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 54 (267)
Q Consensus 15 ~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~Kl 54 (267)
.+++++++.||..|..||+++++||..||+.|...+..|+
T Consensus 71 ~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 71 ALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999976665554
No 25
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.70 E-value=2.4e-05 Score=61.06 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=34.9
Q ss_pred ccccCcHHHHHHHHHHcCCchHHHHhhhcCCCHHHHHhH
Q 024485 8 PVFLSRWPYIIMILFRFDRDWKKIEAFIGSKTVIQIRSH 46 (267)
Q Consensus 8 p~~~GrW~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSH 46 (267)
.|+.++...|.+++..||++|.+|+++|++||+.|+.-|
T Consensus 45 ~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~ 83 (94)
T 4a69_C 45 MWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLY 83 (94)
T ss_dssp CCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHH
Confidence 466677789999999999999999999999999998744
No 26
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.68 E-value=8.9e-06 Score=62.12 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=35.1
Q ss_pred cccCcHHHHHHHHHHcCC----chHHHHhhhcCCCHHHHHhHHH
Q 024485 9 VFLSRWPYIIMILFRFDR----DWKKIEAFIGSKTVIQIRSHAQ 48 (267)
Q Consensus 9 ~~~GrW~~FLegL~~yGr----dWkkIa~~VgTRT~~QVrSHAQ 48 (267)
|+..+=.+|..||..|++ +|.+||+.|+.||+.||+.|+|
T Consensus 23 WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 23 WKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp CCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 444444699999999998 7999999999999999999987
No 27
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.68 E-value=2.5e-05 Score=62.85 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHHHHHHhc
Q 024485 15 PYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 57 (267)
Q Consensus 15 ~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF~Kl~k~ 57 (267)
.++++++..||..|..||.++++||..||+.|...++.+....
T Consensus 63 ~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 63 ETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp HHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred HHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 5899999999999999999999999999999988887765443
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.68 E-value=2.1e-05 Score=60.62 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 15 PYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 15 ~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
.+++++++.||.+|..||++|++||..||+.|...+.
T Consensus 65 ~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 65 RIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp HHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999999977654
No 29
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.63 E-value=5.7e-05 Score=54.84 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCC-chHHHHhhhc--CCCHHHHHhHHHHHHH
Q 024485 15 PYIIMILFRFDR-DWKKIEAFIG--SKTVIQIRSHAQKYFL 52 (267)
Q Consensus 15 ~~FLegL~~yGr-dWkkIa~~Vg--TRT~~QVrSHAQKYF~ 52 (267)
.+.+++++.||. +|..|+++++ .||..|++.+...|..
T Consensus 19 ~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 19 KNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 589999999995 9999999999 9999999999887765
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.52 E-value=4e-05 Score=58.97 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=37.2
Q ss_pred ccccCcHHHHHHHHHHcCC-chHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 8 PVFLSRWPYIIMILFRFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 8 p~~~GrW~~FLegL~~yGr-dWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
||+.++=.+++++++.||. +|..||+++++||..|++.|.++|+
T Consensus 6 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 6 PWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 3444444699999999998 8999999999999999999988764
No 31
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.50 E-value=5.1e-05 Score=60.76 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=39.1
Q ss_pred ccccCcH-----HHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 8 PVFLSRW-----PYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 8 p~~~GrW-----~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
....|.| ++++++++.||.+|+.||+++++||..|++.+..+|+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 3456777 4999999999999999999999999999999998876
No 32
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.44 E-value=8.7e-05 Score=57.74 Aligned_cols=43 Identities=16% Similarity=0.306 Sum_probs=36.6
Q ss_pred cccCcHHHHHHHHHHcCC-chHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 9 VFLSRWPYIIMILFRFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 9 ~~~GrW~~FLegL~~yGr-dWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
|+.++=++++++++.||. +|..||++|++||..|++.+..+|+
T Consensus 4 Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 4 FTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp SCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 334444699999999997 9999999999999999999887764
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.40 E-value=6.6e-05 Score=60.36 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=38.4
Q ss_pred eccccCcHHHHHHHHHHcCC-chHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 7 VPVFLSRWPYIIMILFRFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 7 vp~~~GrW~~FLegL~~yGr-dWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
.||+.++=++++++++.||. +|+.||++|++||..|++.|.++|+
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 34444454699999999995 9999999999999999999988876
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.38 E-value=5.4e-05 Score=60.42 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHH
Q 024485 13 RWPYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKY 50 (267)
Q Consensus 13 rW~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKY 50 (267)
+=.+++++++.||.+|..||+++++||..||+.|...+
T Consensus 86 Ed~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 86 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp HHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 33589999999999999999999999999999987644
No 35
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.32 E-value=0.00024 Score=51.60 Aligned_cols=36 Identities=11% Similarity=0.324 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCC-chHHHHhhhc--CCCHHHHHhHHHHH
Q 024485 15 PYIIMILFRFDR-DWKKIEAFIG--SKTVIQIRSHAQKY 50 (267)
Q Consensus 15 ~~FLegL~~yGr-dWkkIa~~Vg--TRT~~QVrSHAQKY 50 (267)
.+++++++.||. +|+.|+++++ .||..|++.+...+
T Consensus 20 ~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 20 EWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 599999999996 9999998766 99999999887654
No 36
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.23 E-value=0.00021 Score=56.99 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=36.9
Q ss_pred ccCcH-----HHHHHHHHHcCC-chHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 10 FLSRW-----PYIIMILFRFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 10 ~~GrW-----~~FLegL~~yGr-dWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
..|.| .+++++++.||. +|..||+++++||..|++.|..+|+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 44667 489999999997 8999999999999999999888764
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.15 E-value=0.00011 Score=60.42 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=35.6
Q ss_pred cccCcHHHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHH
Q 024485 9 VFLSRWPYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKY 50 (267)
Q Consensus 9 ~~~GrW~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKY 50 (267)
|+.++-..++++++.||.+|..||++|++||..||+.|...+
T Consensus 113 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 333333589999999999999999999999999999987644
No 38
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.10 E-value=0.00039 Score=52.24 Aligned_cols=33 Identities=12% Similarity=0.379 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHH
Q 024485 15 PYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQ 48 (267)
Q Consensus 15 ~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQ 48 (267)
++++++.++||.+|..||+++ .||..||+.+..
T Consensus 32 ~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 32 EKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp HHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 589999999999999999999 999999998864
No 39
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.99 E-value=0.0008 Score=51.58 Aligned_cols=48 Identities=6% Similarity=0.240 Sum_probs=40.9
Q ss_pred ccccCcHHHHHHHHHHcCC-chHHHHhh----hcCCCHHHHHhHHHHHHHHHH
Q 024485 8 PVFLSRWPYIIMILFRFDR-DWKKIEAF----IGSKTVIQIRSHAQKYFLKVQ 55 (267)
Q Consensus 8 p~~~GrW~~FLegL~~yGr-dWkkIa~~----VgTRT~~QVrSHAQKYF~Kl~ 55 (267)
||+.++=+.+++|+++||. +|+.|++. +..||..|++.+...+..+-.
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 4566666799999999999 99999963 789999999999998876553
No 40
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.74 E-value=0.001 Score=61.82 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=41.4
Q ss_pred cccCcHHHHHHHHHHcCC-chHHHHhhhcCCCHHHHHhHHHHHHHHH
Q 024485 9 VFLSRWPYIIMILFRFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKV 54 (267)
Q Consensus 9 ~~~GrW~~FLegL~~yGr-dWkkIa~~VgTRT~~QVrSHAQKYF~Kl 54 (267)
|+...+..|+.|+.+||| +|.+|++.|++||+..|+-|++-++.+.
T Consensus 113 W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 113 WTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred cCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 555566799999999999 9999999999999999999999888776
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.66 E-value=0.001 Score=54.65 Aligned_cols=37 Identities=14% Similarity=0.295 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCC-chHHHHhhhcCCCHHHHHhHHHHHH
Q 024485 15 PYIIMILFRFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 15 ~~FLegL~~yGr-dWkkIa~~VgTRT~~QVrSHAQKYF 51 (267)
.+++++++.||. +|..||+++++||..|++.+.++|+
T Consensus 67 ~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 67 QRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp HHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 489999999997 8999999999999999999888764
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.07 E-value=0.0044 Score=49.52 Aligned_cols=45 Identities=4% Similarity=0.234 Sum_probs=35.9
Q ss_pred cccCcHHHHHHHHHHcCC-chHHHHhhh----cCCCHHHHHhHHHHHHHH
Q 024485 9 VFLSRWPYIIMILFRFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLK 53 (267)
Q Consensus 9 ~~~GrW~~FLegL~~yGr-dWkkIa~~V----gTRT~~QVrSHAQKYF~K 53 (267)
|+.++=+.+++|+++||. .|+.|++.. ..||.+|++.+...++.+
T Consensus 16 WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 16 FSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 333333599999999999 999999633 799999999988776654
No 43
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.65 E-value=0.0067 Score=44.78 Aligned_cols=38 Identities=11% Similarity=0.261 Sum_probs=31.3
Q ss_pred cccCcHHHHHHHHHHcCCchHHHH---hhhcCCCHHHHHhH
Q 024485 9 VFLSRWPYIIMILFRFDRDWKKIE---AFIGSKTVIQIRSH 46 (267)
Q Consensus 9 ~~~GrW~~FLegL~~yGrdWkkIa---~~VgTRT~~QVrSH 46 (267)
|+.++=...++|+++||+.|+.|+ .|..-||.+.|...
T Consensus 11 WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk 51 (62)
T 1x58_A 11 FTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHK 51 (62)
T ss_dssp CCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHH
Confidence 333333589999999999999999 58899999999853
No 44
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=95.60 E-value=0.014 Score=47.89 Aligned_cols=47 Identities=4% Similarity=0.194 Sum_probs=38.6
Q ss_pred cccCcH-----HHHHHHHHHcCC-chHHHHhhh----cCCCHHHHHhHHHHHHHHHH
Q 024485 9 VFLSRW-----PYIIMILFRFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKVQ 55 (267)
Q Consensus 9 ~~~GrW-----~~FLegL~~yGr-dWkkIa~~V----gTRT~~QVrSHAQKYF~Kl~ 55 (267)
+..+.| +..++|+++||. .|+.|++.. ..||..|++.+...++.+-.
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 445666 599999999999 999999643 79999999999888876553
No 45
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=95.19 E-value=0.016 Score=47.36 Aligned_cols=46 Identities=4% Similarity=0.203 Sum_probs=38.7
Q ss_pred cccCcH-----HHHHHHHHHcCC-chHHHHhhh----cCCCHHHHHhHHHHHHHHH
Q 024485 9 VFLSRW-----PYIIMILFRFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 54 (267)
Q Consensus 9 ~~~GrW-----~~FLegL~~yGr-dWkkIa~~V----gTRT~~QVrSHAQKYF~Kl 54 (267)
+..+.| +..++|+++||. .|..|+.+. ..||..|++.+...+..+.
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 344566 589999999999 999999654 7899999999998887764
No 46
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.05 E-value=0.033 Score=53.15 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=39.5
Q ss_pred cccCcHHHHHHHHHHcCC-chHHHHhhhc-CCCHHHHHhHHHHHHHHH
Q 024485 9 VFLSRWPYIIMILFRFDR-DWKKIEAFIG-SKTVIQIRSHAQKYFLKV 54 (267)
Q Consensus 9 ~~~GrW~~FLegL~~yGr-dWkkIa~~Vg-TRT~~QVrSHAQKYF~Kl 54 (267)
|+.-.+..|+.|+++||| +...|++.|+ +||+..|+-.|+-|+.+.
T Consensus 126 WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 126 WNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhh
Confidence 444555799999999999 8999999998 999999999998777654
No 47
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=92.69 E-value=0.042 Score=49.95 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=37.1
Q ss_pred ccCcH-----HHHHHHHHHcCCc------hHHHHhhhcCCCHHHHHhHHHHHHHH
Q 024485 10 FLSRW-----PYIIMILFRFDRD------WKKIEAFIGSKTVIQIRSHAQKYFLK 53 (267)
Q Consensus 10 ~~GrW-----~~FLegL~~yGrd------WkkIa~~VgTRT~~QVrSHAQKYF~K 53 (267)
+.+.| ...|+..++||.. |..||.+++.||..|||.|..+|..+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 44566 3778889999884 99999999999999999999988755
No 48
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=91.43 E-value=0.036 Score=54.44 Aligned_cols=35 Identities=6% Similarity=0.131 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHcCCchHHHHhhhcCCCHHHHHhH
Q 024485 12 SRWPYIIMILFRFDRDWKKIEAFIGSKTVIQIRSH 46 (267)
Q Consensus 12 GrW~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSH 46 (267)
.+-.+|.+||..||++|.+|+++|++||+.+|..|
T Consensus 195 eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~y 229 (482)
T 2xag_B 195 EDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKF 229 (482)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHH
Confidence 33359999999999999999999999999999855
No 49
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=88.35 E-value=0.28 Score=37.89 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=30.0
Q ss_pred cCcH-----HHHHHHHHHcCC--chH--------------HHHhhh-----cCCCHHHHHhHHHHHHHH
Q 024485 11 LSRW-----PYIIMILFRFDR--DWK--------------KIEAFI-----GSKTVIQIRSHAQKYFLK 53 (267)
Q Consensus 11 ~GrW-----~~FLegL~~yGr--dWk--------------kIa~~V-----gTRT~~QVrSHAQKYF~K 53 (267)
.+-| +.|++||+.|-. .|| -|+.|| .+||..||.||-|-.-.+
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHH
Confidence 4567 489999999964 222 134444 489999999999964443
No 50
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=78.01 E-value=2.3 Score=39.43 Aligned_cols=46 Identities=11% Similarity=0.347 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHHcCC----chHHHH------------hhhcCCCHHHHHhHHHHHHHHHHhc
Q 024485 12 SRWPYIIMILFRFDR----DWKKIE------------AFIGSKTVIQIRSHAQKYFLKVQKN 57 (267)
Q Consensus 12 GrW~~FLegL~~yGr----dWkkIa------------~~VgTRT~~QVrSHAQKYF~Kl~k~ 57 (267)
.+.+.+|-+|.+||. .|.+|. -|+.|||+.+|..||+-...-+.|.
T Consensus 218 eEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE 279 (304)
T 1ofc_X 218 IEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE 279 (304)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 334578889999998 699996 4999999999999998766655554
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=76.28 E-value=2.6 Score=35.35 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHcC--C-chHHHHhh--hcCCCHHHHHhHHHHHHHHHHh
Q 024485 13 RWPYIIMILFRFD--R-DWKKIEAF--IGSKTVIQIRSHAQKYFLKVQK 56 (267)
Q Consensus 13 rW~~FLegL~~yG--r-dWkkIa~~--VgTRT~~QVrSHAQKYF~Kl~k 56 (267)
+-..|+.|+.+|| + +|+.|++- +..||...|+..++-+..+..+
T Consensus 14 E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 14 EIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp HHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 3469999999999 4 89999843 5589999999988887766433
No 52
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=75.98 E-value=2.1 Score=33.06 Aligned_cols=45 Identities=29% Similarity=0.609 Sum_probs=31.6
Q ss_pred CchHHHHhhhc-----CCCHHHHHhHHHHHHH---HHHhcCCCCCCCCCCCCC
Q 024485 26 RDWKKIEAFIG-----SKTVIQIRSHAQKYFL---KVQKNGTAEHLPPPRPKR 70 (267)
Q Consensus 26 rdWkkIa~~Vg-----TRT~~QVrSHAQKYF~---Kl~k~g~~~~~Pppr~kR 70 (267)
+.|+.|++-+| |....+++.|-+||.. +..+......+|+.+||+
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~~~~~~p~~~~~~ 107 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPPIKPRK 107 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTSSSSCTTCSCC
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 47999996655 2334688888888854 344455567899988874
No 53
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=68.98 E-value=9.4 Score=29.78 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCchHHHHhhh-----cCCCHHHHHhHHHHHHHHHHhc
Q 024485 15 PYIIMILFRFDRDWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQKN 57 (267)
Q Consensus 15 ~~FLegL~~yGrdWkkIa~~V-----gTRT~~QVrSHAQKYF~Kl~k~ 57 (267)
+..++-.+.||.+|-.|+... +.||..+|+..--..-.++.+.
T Consensus 39 d~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 39 DHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp HHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 467788899999999999544 5799999998865555565544
No 54
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=56.11 E-value=22 Score=28.18 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=40.8
Q ss_pred eccccCcHHHHHHHHHHcCC---chHHHHhhhcCCCHHHHHhHHHHHHHHHHhc
Q 024485 7 VPVFLSRWPYIIMILFRFDR---DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 57 (267)
Q Consensus 7 vp~~~GrW~~FLegL~~yGr---dWkkIa~~VgTRT~~QVrSHAQKYF~Kl~k~ 57 (267)
|-|..+.=+-.|.+.+.-|. .|..||+-++.|++-||.-..|+...=+++.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 34444444578899999888 8999999999999999999999877666654
No 55
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=39.13 E-value=78 Score=22.34 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHhhhcCCCcchHHHHHHhhhccCCc
Q 024485 215 IDVETVLLLMRNLSINLTSPDFEDHRRLLSSYEIDP 250 (267)
Q Consensus 215 Id~ETvLLLMrNLsiNL~sp~fe~~~~llssy~~~~ 250 (267)
|+.+.+..+|+.+-.+++. ++.+.++..+|.+.
T Consensus 46 I~~~El~~~l~~~g~~~~~---~e~~~l~~~~D~d~ 78 (94)
T 2kz2_A 46 ISAAELRHVMTNLGEKLTD---EEVDEMIREADIDG 78 (94)
T ss_dssp BCHHHHHHHHHHHTCCCCH---HHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHhCCCCCH---HHHHHHHHHhCCCC
Confidence 8889999999998766543 44667777777654
No 56
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=33.82 E-value=1.1e+02 Score=23.65 Aligned_cols=61 Identities=11% Similarity=0.309 Sum_probs=34.3
Q ss_pred ChHHHhhhhhcccCCCchhHHHHhhcCC-----cchHHHHHHHHHHhhhcCCCcchHHHHHHhhhccCC
Q 024485 186 DFAQVYTFIGSVFDPNASDHVQKLKKMD-----PIDVETVLLLMRNLSINLTSPDFEDHRRLLSSYEID 249 (267)
Q Consensus 186 dFaqVY~FiGsvFDp~~~~hlqkLk~MD-----PId~ETvLLLMrNLsiNL~sp~fe~~~~llssy~~~ 249 (267)
+|..+.+-+| +.| +...++++-++| .|+++..+-+|..+.........++.++.+..||.+
T Consensus 32 El~~~lr~lG--~~~-t~~el~~~~~~d~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d 97 (159)
T 3i5g_C 32 KVGDLLRCLG--MNP-TEAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDRE 97 (159)
T ss_dssp GHHHHHHHTT--CCC-CHHHHHTTTCCSSTTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcC--CCC-CHHHHHHHHcccccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcC
Confidence 4566665555 233 344555554444 367777777776665544444455566666666554
No 57
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=27.55 E-value=40 Score=26.57 Aligned_cols=44 Identities=7% Similarity=0.251 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcC-------CchHHHHhhhcCCC----HHHHHhHHHHHHHHHHhc
Q 024485 14 WPYIIMILFRFD-------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQKN 57 (267)
Q Consensus 14 W~~FLegL~~yG-------rdWkkIa~~VgTRT----~~QVrSHAQKYF~Kl~k~ 57 (267)
+.+|..-.+.-| +.|+.|++-+|=-+ ..+++.|-.||....++.
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 455555444332 37999996665444 468888888887766554
No 58
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=26.87 E-value=53 Score=22.99 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=29.7
Q ss_pred HHHHHHHHc--------CC-chHHHHh-hhcCCCHHHHHhHHHHHH
Q 024485 16 YIIMILFRF--------DR-DWKKIEA-FIGSKTVIQIRSHAQKYF 51 (267)
Q Consensus 16 ~FLegL~~y--------Gr-dWkkIa~-~VgTRT~~QVrSHAQKYF 51 (267)
..++-+..| |. -|+.+++ .+..+|-.+.|.|--|++
T Consensus 12 ~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 12 AILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp HHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred HHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 556667777 65 7999998 899999999999988764
No 59
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=25.33 E-value=53 Score=23.43 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=22.0
Q ss_pred cCcHHHHHHHHHHcCCchHHHHhhhc-----CCCHHHHHhHHHHH
Q 024485 11 LSRWPYIIMILFRFDRDWKKIEAFIG-----SKTVIQIRSHAQKY 50 (267)
Q Consensus 11 ~GrW~~FLegL~~yGrdWkkIa~~Vg-----TRT~~QVrSHAQKY 50 (267)
.-+|-+|+...+..|=.=..|.+|+- +.+..|+|||.=+=
T Consensus 12 d~ewl~LI~~Ak~lGlsleEIrefL~l~~~~~~~~~~~rs~~~~~ 56 (57)
T 1b0n_B 12 DQEWVELMVEAKEANISPEEIRKYLLLNKKSAHPGPAARSHTVNP 56 (57)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCcchHHHhcCCCC
Confidence 45799999999999998888887764 44568999997543
No 60
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=23.47 E-value=20 Score=27.62 Aligned_cols=38 Identities=11% Similarity=0.008 Sum_probs=32.0
Q ss_pred CcHHHHHHHHHHcCCchHHHHhhhcCCCHHHHHhHHHHH
Q 024485 12 SRWPYIIMILFRFDRDWKKIEAFIGSKTVIQIRSHAQKY 50 (267)
Q Consensus 12 GrW~~FLegL~~yGrdWkkIa~~VgTRT~~QVrSHAQKY 50 (267)
.|+++|.+.|+.|| .|-+=|-|.+-=|+.|...+.++.
T Consensus 25 kr~~kv~k~l~~yG-~rvQ~SVFe~~lt~~~~~~L~~~L 62 (103)
T 3oq2_A 25 RRLRRIAKACQDYG-QRVQYSVFECVVDPAQWAKLKHRL 62 (103)
T ss_dssp HHHHHHHHHHGGGE-EEEETTEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccceEEEEEEEcCHHHHHHHHHHH
Confidence 58899999999999 888888888888999988665543
Done!