BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024486
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 17/240 (7%)
Query: 14 NETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYD---WAIYFYPDGKNPEDGALYV 70
++ V S+ +T+ +S + G+ + S F+ G D W + P G + E
Sbjct: 2 SKVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLS 60
Query: 71 SVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFF 130
+ ++ ++VRA F+ ++++ G+ +A+ES +G WG+K+F
Sbjct: 61 LYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFI 112
Query: 131 KRTSL--ETSDYIKDDCLLINCTVGVVRNRLEGPKQYS---IPVPPSDMGQGLKDLLESE 185
+R L E + + DD L + C V VV++ + Q + + VP + L L E+
Sbjct: 113 RRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENS 172
Query: 186 IGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLF 245
D V + F+AHK ILAARSPVF A F + + ++V + DVEP +FK M+ F
Sbjct: 173 RFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCF 232
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%)
Query: 167 IPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNL 226
+ VP + L L E+ D V + F+AHK ILAARSPVF A F + +
Sbjct: 5 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKK 64
Query: 227 DKVVVKDVEPSIFKVMLLF 245
++V + DVEP +FK M+ F
Sbjct: 65 NRVEINDVEPEVFKEMMCF 83
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 40/79 (50%)
Query: 167 IPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNL 226
+ VP + L L E+ D V + F+AHK ILAARSPVF A F +
Sbjct: 14 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKK 73
Query: 227 DKVVVKDVEPSIFKVMLLF 245
++V + DVEP +FK F
Sbjct: 74 NRVEINDVEPEVFKEXXCF 92
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 9 TSKSINETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYD---WAIYFYPDGKNPED 65
+S S + V S+ +T+ +S + G+ + S F+ G D W + P G + E
Sbjct: 2 SSGSSGKVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEES 60
Query: 66 GALYVSVFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWG 125
+ ++ ++VRA F+ ++++ G+ +A+ES +G WG
Sbjct: 61 KDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWG 112
Query: 126 YKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRNRL 159
+K+F +R L E + + DD L + C V VV++ +
Sbjct: 113 FKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSV 148
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 15 ETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYD---WAIYFYPDGKNPEDGALYVS 71
+ V S+ +T+ +S + G+ + S F+ G D W + P G + E
Sbjct: 7 KVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 65
Query: 72 VFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFK 131
+ ++ ++VRA F+ ++++ G+ +A+ES +G WG+K+F +
Sbjct: 66 YLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIR 117
Query: 132 RTSL--ETSDYIKDDCLLINCTVGVVRN 157
R L E + + DD L + C V VV++
Sbjct: 118 RDFLLDEANGLLPDDKLTLFCEVSVVQD 145
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 14/148 (9%)
Query: 15 ETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYD---WAIYFYPDGKNPEDGALYVS 71
+ V S+ +T+ +S + G+ + S F+ G D W + P G + E
Sbjct: 7 KVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 65
Query: 72 VFIALASEGTDVRALFELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFK 131
+ ++ ++VRA F+ ++++ G+ +A+ES +G WG+K+F +
Sbjct: 66 YLLLVSCPKSEVRAKFKFSILNAKGEE--------TKAMESQRAYRFVQGKDWGFKKFIR 117
Query: 132 RTSL--ETSDYIKDDCLLINCTVGVVRN 157
R L E + + DD L + C V VV++
Sbjct: 118 RGFLLDEANGLLPDDKLTLFCEVSVVQD 145
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 184 SEIGCDIVFEVG----DETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIF 239
+E+ D+ F VG T AHK +LA S VF A FYG + + ++ + DVEP+ F
Sbjct: 5 NELXADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAXFYGDLAEVK-SEIHIPDVEPAAF 63
Query: 240 KVML 243
++L
Sbjct: 64 LILL 67
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 165 YSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLV-GD 223
Y V +++ L D + ++ CD+ V + F+AH+ +LAA S F ++ G G+
Sbjct: 7 YESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE 66
Query: 224 RNL---DKVVVKDVEPSI 238
N+ ++V VK EP I
Sbjct: 67 LNITLPEEVTVKGFEPLI 84
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 165 YSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDR 224
Y V +++ GL D + +I CD+ V + F+AH+ +LAA S F + LVG
Sbjct: 10 YESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYF---WQALVGQT 66
Query: 225 NLDKVV 230
D VV
Sbjct: 67 KNDLVV 72
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 171 PSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVV 230
SD+ L L +I D+V V E F+AHK +L A S +F + F + RNL +
Sbjct: 13 ASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK-RNLSVIN 71
Query: 231 VK-DVEPSIFKVMLLF 245
+ ++ P F ++L F
Sbjct: 72 LDPEINPEGFNILLDF 87
>pdb|1LB5|A Chain A, Traf6-Rank Complex
pdb|1LB6|A Chain A, Traf6-Cd40 Complex
Length = 160
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 49 GYDWAIYFYPDGKNPEDGALYVSVFIALASEGTD------VRALFELTLVDQSGKGKHKV 102
GY + + + A Y+S+F+ D + LT++DQS + V
Sbjct: 40 GYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQS---EAPV 96
Query: 103 HSHFDRALESGPYTLKYRGSM-------WGYKRFFKRTSLETSDYIKDDCLLINCTVGV 154
+ + +++ P L ++ +GY F +L +IKDD LL+ C V
Sbjct: 97 RQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVST 155
>pdb|1LB4|A Chain A, Traf6 Apo Structure
Length = 159
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 49 GYDWAIYFYPDGKNPEDGALYVSVFIALASEGTD------VRALFELTLVDQSGKGKHKV 102
GY + + + A Y+S+F+ D + LT++DQS + V
Sbjct: 39 GYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQS---EAPV 95
Query: 103 HSHFDRALESGPYTLKYRGSM-------WGYKRFFKRTSLETSDYIKDDCLLINCTVGV 154
+ + +++ P L ++ +GY F +L +IKDD LL+ C V
Sbjct: 96 RQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVST 154
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 165 YSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDR 224
Y V +++ L D + ++ CD+ V + F+AH+ +LAA S F ++ G D
Sbjct: 14 YESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQT-DA 72
Query: 225 NL-----DKVVVKDVEPSI 238
L ++V VK EP I
Sbjct: 73 ELTVTLPEEVTVKGFEPLI 91
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSS 247
CD+V V + F AH+ +LA S +F F+ RN + + P F+ +L + +
Sbjct: 29 CDVVIMVDSQEFHAHRTVLACTSKMFEILFH-----RNSQHYTLDFLSPKTFQQILEY-A 82
Query: 248 YSA 250
Y+A
Sbjct: 83 YTA 85
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSS 247
CD+V V + F AH+ +LA S +F F+ RN + + P F+ +L + +
Sbjct: 28 CDVVIMVDSQEFHAHRTVLACTSKMFEILFH-----RNSQHYTLDFLSPKTFQQILEY-A 81
Query: 248 YSA 250
Y+A
Sbjct: 82 YTA 84
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 172 SDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVV 231
SD+ L L +I D+V V E F+AHK +L A S + FY + D+ + V
Sbjct: 17 SDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGL----FYSIFTDQLKCNLSV 72
Query: 232 KDVEPSI 238
+++P I
Sbjct: 73 INLDPEI 79
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 153 GVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPV 212
G + ++GP P SD+ GL + + CD+V V F H+ +LAA S
Sbjct: 1 GSMAGGVDGPIGIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQY 60
Query: 213 FRAQF 217
F+ F
Sbjct: 61 FKKLF 65
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVK---DVEPSIFKVMLL 244
CD+ V FKAH+ +LAA S FR F N VV+ V+P F+ +L
Sbjct: 34 CDVSVVVKGHAFKAHRAVLAASSSYFRDLF------NNSRSAVVELPAAVQPQSFQQILS 87
Query: 245 F 245
F
Sbjct: 88 F 88
>pdb|4GJH|A Chain A, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|B Chain B, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|C Chain C, Crystal Structure Of The Traf Domain Of Traf5
Length = 178
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 49 GYDWAIYFYPDGKNPEDGALYVSVFIALASEGTDV-----RALFELTLVDQSGKGKHKVH 103
GY Y +G G F+ + E + R L L+DQSGK H V
Sbjct: 59 GYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVE 118
Query: 104 SHFDRALESGPYTLKYR---GSM---WGYKRFFKRTSLETSD--YIKDDCLLINCTVGVV 155
+ ++ P + ++ G M G RF ++LE S YIKDD L + V +
Sbjct: 119 T-----FKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLT 173
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 167 IPVP--PSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFY-GLVGD 223
IP P SD+ GL + + CD+V V F H+ +LAA S F+ F G V D
Sbjct: 3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVD 62
Query: 224 RN 225
+
Sbjct: 63 QQ 64
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGD 223
CD+ V D F+AHK IL+A S F Q + + G
Sbjct: 34 CDVTVIVEDRKFRAHKNILSASSTYFH-QLFSVAGQ 68
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGD 223
CD+ V D F+AHK IL+A S F Q + + G
Sbjct: 32 CDVTVIVEDRKFRAHKNILSASSTYFH-QLFSVAGQ 66
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLF 245
CD +VG FKAH +LA S F++ L GD + VV+ IF ++L F
Sbjct: 25 CDATLDVGGLVFKAHWSVLACCSHFFQS----LYGDGSGGSVVLPAGFAEIFGLLLDF 78
>pdb|3M5B|A Chain A, Crystal Structure Of The Btb Domain From FazfZBTB32
pdb|3M5B|B Chain B, Crystal Structure Of The Btb Domain From FazfZBTB32
Length = 119
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLF 245
CD + VG + F AH L+LA S Q G G L + + PS F +L F
Sbjct: 31 CDTLITVGSQEFPAHSLVLAGVS-----QQLGRRGQWALG----EGISPSTFAQLLNF 79
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 161 GPKQYSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQF 217
GP P + + L + + CD F V FKAHK +LAA S F+ F
Sbjct: 1 GPLGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLF 57
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQF 217
CD F V FKAHK +LAA S F+ F
Sbjct: 26 CDCTFVVDGVHFKAHKAVLAACSEYFKMLF 55
>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate
pdb|2Y4N|B Chain B, Paak1 In Complex With Phenylacetyl Adenylate
Length = 437
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 28 YSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPE------DGALYVSVFIALASEGT 81
Y L++ MGPG G W +FYP+ +PE DG L VF +L E
Sbjct: 242 YGLSEVMGPGVASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKEAL 301
Query: 82 DV 83
+
Sbjct: 302 PI 303
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLF 245
CD +VG FKAH +LA S F+ + GD VV+ IF ++L F
Sbjct: 26 CDATLDVGGLVFKAHWSVLACCSHFFQR----IYGDGTGGSVVLPAGFAEIFGLLLDF 79
>pdb|4AM5|A Chain A, Bacterioferritin From Blastochloris Viridis
pdb|4AM5|B Chain B, Bacterioferritin From Blastochloris Viridis
pdb|4AM2|A Chain A, Bacterioferritin From Blastochloris Viridis
pdb|4AM2|B Chain B, Bacterioferritin From Blastochloris Viridis
pdb|4AM4|A Chain A, Bacterioferritin From Blastochloris Viridis
pdb|4AM4|B Chain B, Bacterioferritin From Blastochloris Viridis
Length = 159
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 97 KGKHKVHSHFDRALES-----GPYTLKYRG-SMWGYKRFFKRTSLETSDYIKDDCLLINC 150
KG KV + +R L S Y L YR WGYK K+ E+ + + +
Sbjct: 2 KGDQKVIEYLNRGLRSELTAVSQYWLHYRMLEDWGYKDLAKKWRAESIEEMAHADKFVER 61
Query: 151 TVGVVRNRLEGPKQYSIPVPPSDMGQGLKDLLESEIGCD 189
+ LEG + P +GQ +K++LES++ +
Sbjct: 62 ILF-----LEGLPNLQ-TLDPLRIGQTVKEVLESDLAAE 94
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 80 GTDVRALFELTLVDQSGKGKHKVHS------------HFDRALESGPYTLKYRGSMWGYK 127
G + +FEL + QS +GKH + H LE Y LK R M Y+
Sbjct: 203 GFKIPGIFELGISSQSDRGKHYIRRTKRFSHTKSVFLHARSDLEVAHYKLKPRSLMLHYE 262
Query: 128 --RFFKRTSLETS 138
+ KR LE S
Sbjct: 263 FLQRVKRLPLEYS 275
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRN--LDKVVVK 232
CD +G+ FKAH+ +LA+ S F A Y + N LD+ VK
Sbjct: 23 CDCTIVIGEFQFKAHRNVLASFSEYFGA-IYRSTSENNVFLDQSQVK 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,583,827
Number of Sequences: 62578
Number of extensions: 374693
Number of successful extensions: 647
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 33
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)