Query 024486
Match_columns 267
No_of_seqs 198 out of 2018
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03774 MATH_SPOP Speckle-type 99.9 2.9E-26 6.4E-31 174.8 14.6 131 16-156 2-138 (139)
2 cd03780 MATH_TRAF5 Tumor Necro 99.9 4.1E-26 8.8E-31 174.1 12.4 131 19-153 1-148 (148)
3 cd03777 MATH_TRAF3 Tumor Necro 99.9 4.4E-26 9.6E-31 179.9 12.8 136 15-154 35-185 (186)
4 cd03779 MATH_TRAF1 Tumor Necro 99.9 8.8E-26 1.9E-30 171.4 11.7 130 19-153 1-147 (147)
5 cd03781 MATH_TRAF4 Tumor Necro 99.9 9.1E-26 2E-30 174.5 11.6 132 19-153 1-154 (154)
6 cd03772 MATH_HAUSP Herpesvirus 99.9 4.3E-25 9.4E-30 167.8 14.0 126 18-156 2-134 (137)
7 cd00270 MATH_TRAF_C Tumor Necr 99.9 9.5E-26 2.1E-30 174.1 10.1 131 19-153 1-149 (149)
8 cd03775 MATH_Ubp21p Ubiquitin- 99.9 4E-25 8.7E-30 167.3 12.7 118 20-153 2-134 (134)
9 cd03776 MATH_TRAF6 Tumor Necro 99.9 1.1E-25 2.3E-30 173.2 9.6 131 19-153 1-147 (147)
10 cd03771 MATH_Meprin Meprin fam 99.9 3.2E-25 6.9E-30 171.3 11.9 134 18-153 1-167 (167)
11 cd03773 MATH_TRIM37 Tripartite 99.9 6E-25 1.3E-29 166.2 12.4 124 18-153 4-130 (132)
12 cd03778 MATH_TRAF2 Tumor Necro 99.9 3.2E-24 7E-29 164.5 12.4 137 14-153 14-164 (164)
13 cd00121 MATH MATH (meprin and 99.9 1.6E-21 3.4E-26 145.5 13.3 120 19-153 1-126 (126)
14 cd03783 MATH_Meprin_Alpha Mepr 99.8 6.2E-21 1.3E-25 145.7 9.3 135 19-153 2-167 (167)
15 PF00917 MATH: MATH domain; I 99.8 4.1E-20 9E-25 136.9 10.7 113 25-154 1-119 (119)
16 cd03782 MATH_Meprin_Beta Mepri 99.8 2.5E-20 5.4E-25 141.5 9.1 132 19-152 2-166 (167)
17 PHA02713 hypothetical protein; 99.7 2.3E-17 5E-22 152.4 6.3 92 170-263 8-101 (557)
18 KOG4441 Proteins containing BT 99.7 7.7E-17 1.7E-21 148.7 6.3 94 170-263 19-112 (571)
19 smart00061 MATH meprin and TRA 99.7 1E-15 2.2E-20 108.5 10.3 89 21-130 2-95 (95)
20 PHA02790 Kelch-like protein; P 99.6 5.4E-16 1.2E-20 141.2 6.8 85 176-262 11-97 (480)
21 PF00651 BTB: BTB/POZ domain; 99.6 8.4E-16 1.8E-20 112.3 5.8 84 178-261 1-87 (111)
22 KOG4350 Uncharacterized conser 99.6 4.6E-16 1E-20 131.9 3.8 86 172-257 29-114 (620)
23 PHA03098 kelch-like protein; P 99.5 2.7E-14 5.9E-19 132.0 5.8 75 184-262 6-82 (534)
24 COG5077 Ubiquitin carboxyl-ter 99.5 4.3E-14 9.3E-19 128.1 5.8 126 16-158 36-174 (1089)
25 smart00225 BTB Broad-Complex, 99.5 1.4E-13 3E-18 95.9 6.1 72 189-260 1-72 (90)
26 KOG2075 Topoisomerase TOP1-int 99.3 3.1E-12 6.8E-17 111.1 5.8 101 166-266 93-201 (521)
27 KOG1987 Speckle-type POZ prote 98.9 8.4E-09 1.8E-13 88.5 11.2 160 23-258 8-171 (297)
28 KOG4591 Uncharacterized conser 98.8 1.8E-09 3.9E-14 84.0 3.2 84 173-259 52-138 (280)
29 KOG0783 Uncharacterized conser 98.7 4.4E-08 9.5E-13 90.6 7.6 81 171-251 538-634 (1267)
30 KOG4682 Uncharacterized conser 98.5 2.8E-07 6.1E-12 79.0 7.6 85 178-263 60-148 (488)
31 KOG2838 Uncharacterized conser 98.2 3E-07 6.6E-12 75.0 0.1 83 170-252 113-197 (401)
32 KOG0783 Uncharacterized conser 98.2 1E-06 2.2E-11 81.9 2.9 67 187-253 710-778 (1267)
33 KOG1863 Ubiquitin carboxyl-ter 97.6 6.5E-05 1.4E-09 74.9 4.8 119 22-157 30-154 (1093)
34 KOG0297 TNF receptor-associate 97.4 9.6E-05 2.1E-09 65.6 2.2 80 14-94 275-365 (391)
35 KOG2838 Uncharacterized conser 97.0 0.00016 3.5E-09 59.4 -0.4 83 172-254 220-329 (401)
36 PF03931 Skp1_POZ: Skp1 family 96.3 0.0084 1.8E-07 38.6 4.2 55 190-247 3-58 (62)
37 KOG0511 Ankyrin repeat protein 95.6 0.0028 6E-08 54.7 -0.5 62 197-259 301-366 (516)
38 PF02214 BTB_2: BTB/POZ domain 95.6 0.01 2.2E-07 41.5 2.5 64 190-254 1-69 (94)
39 KOG3473 RNA polymerase II tran 94.8 0.15 3.2E-06 35.4 6.1 51 195-246 25-77 (112)
40 KOG2716 Polymerase delta-inter 94.1 0.16 3.4E-06 41.6 6.1 71 190-261 7-81 (230)
41 smart00512 Skp1 Found in Skp1 92.4 0.11 2.4E-06 37.1 2.4 59 190-249 4-64 (104)
42 KOG0511 Ankyrin repeat protein 92.2 0.016 3.6E-07 50.0 -2.4 74 174-249 133-210 (516)
43 KOG2714 SETA binding protein S 89.1 0.73 1.6E-05 40.9 4.8 66 189-254 12-80 (465)
44 PF11822 DUF3342: Domain of un 72.5 1.3 2.9E-05 38.0 0.3 63 197-259 14-78 (317)
45 KOG3840 Uncharaterized conserv 69.5 13 0.00029 31.7 5.5 67 186-252 94-165 (438)
46 PF09593 Pathogen_betaC1: Beta 65.9 14 0.00031 26.9 4.4 69 195-264 20-92 (117)
47 KOG1665 AFH1-interacting prote 50.0 56 0.0012 26.8 5.7 65 189-253 10-78 (302)
48 KOG1724 SCF ubiquitin ligase, 33.0 31 0.00068 26.7 1.9 53 195-248 13-65 (162)
49 KOG1778 CREB binding protein/P 21.9 25 0.00053 30.5 -0.5 61 189-249 28-88 (319)
50 PF01407 Gemini_AL3: Geminivir 21.3 37 0.0008 24.8 0.4 20 8-27 5-24 (120)
No 1
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.94 E-value=2.9e-26 Score=174.77 Aligned_cols=131 Identities=27% Similarity=0.604 Sum_probs=107.0
Q ss_pred eeeEEEEEEEcccccccCCCCCCeeeeCceeecc---eeEEEEEEcCCCCCCCCCCeEEEEEEEcc-CCceEEEEEEEEE
Q 024486 16 TVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGG---YDWAIYFYPDGKNPEDGALYVSVFIALAS-EGTDVRALFELTL 91 (267)
Q Consensus 16 ~~~~~~~w~I~nfs~~~~~~~~~~~~S~~F~~gg---~~W~l~~yp~g~~~~~~~~~lsl~l~~~~-~~~~~~~~~~~~l 91 (267)
+...+|.|+|+|||.+++ +.++++.|++|.+|| ++|+|++||+|...+ +.+|+||||++.+ ..+++.|+|+|+|
T Consensus 2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~-~~~~iSlyL~l~~~~~~~v~a~f~~~l 79 (139)
T cd03774 2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEE-SKDYLSLYLLLVSCPKSEVRAKFKFSI 79 (139)
T ss_pred ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEEEEeCCCCCCC-CCCeEEEEEEEccCCCCcEEEEEEEEE
Confidence 568899999999998875 567899999999998 599999999998643 5789999999976 4578999999999
Q ss_pred eeCCCCCceeeeeccccccccCceeecccCcccccccccccccc--ccccCcCCCceEEEEEEEEEe
Q 024486 92 VDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVR 156 (267)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l--~~~~~l~dd~l~i~~~i~v~~ 156 (267)
+|+.+....... ....+.|. ...+|||..|+++++| +.+|||.||+|+|+|+|+|+.
T Consensus 80 ~n~~~~~~~~~~-------~~~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 80 LNAKGEETKAME-------SQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EecCCCeeeeec-------ccCcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 999865432111 11124454 3579999999999999 457999999999999999974
No 2
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.94 E-value=4.1e-26 Score=174.06 Aligned_cols=131 Identities=27% Similarity=0.429 Sum_probs=103.2
Q ss_pred EEEEEEEcccccccC-CCCCC--eeeeCce--eecceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceEEEEE
Q 024486 19 GSHQFTVKGYSLAKG-MGPGK--CLSSDVF--TVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (267)
Q Consensus 19 ~~~~w~I~nfs~~~~-~~~~~--~~~S~~F--~~gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~~~~~ 87 (267)
|.++|+|.+|+++++ .+.|. ++.||+| ..+||+|+|++||||.+.+ .++||||||.++.+ .|++.+++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~-~~~~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSG-KGTHLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCC-CCCEEEEEEEEecCccccccCcceEEEE
Confidence 679999999999875 56666 8999999 7899999999999999855 68899999999986 59999999
Q ss_pred EEEEeeCCCCCceeeeeccccccccCceeeccc----Cccccccccccccccccc--cCcCCCceEEEEEEE
Q 024486 88 ELTLVDQSGKGKHKVHSHFDRALESGPYTLKYR----GSMWGYKRFFKRTSLETS--DYIKDDCLLINCTVG 153 (267)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~G~~~fi~~~~l~~~--~~l~dd~l~i~~~i~ 153 (267)
+|+|+||.+...+.... +.. +.....|... +..||++.||++++|+++ +||.||+|+|+|.|.
T Consensus 80 tfsLlDq~~~~~~~~~~-~~~--~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 80 TLMLLDQSGKKNHIMET-FKA--DPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred EEEEECCCCCCCCccee-eec--CCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence 99999997654321111 100 0111334322 457999999999999854 999999999999873
No 3
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.94 E-value=4.4e-26 Score=179.88 Aligned_cols=136 Identities=26% Similarity=0.372 Sum_probs=106.5
Q ss_pred eeeeEEEEEEEcccccccC-CCCCC--eeeeCceeec--ceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceE
Q 024486 15 ETVNGSHQFTVKGYSLAKG-MGPGK--CLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDV 83 (267)
Q Consensus 15 ~~~~~~~~w~I~nfs~~~~-~~~~~--~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~ 83 (267)
....|+|+|+|.|||..++ .+.|+ ++.||+|++| ||+|+|++||||.+.+ .++|||+||.++++ .|++
T Consensus 35 ~~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~-~~~~iSvyl~L~~ge~D~~L~WP~ 113 (186)
T cd03777 35 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG-KGTHLSLFFVIMRGEYDALLPWPF 113 (186)
T ss_pred cccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCC-CCCEEEEEEEEecCCcccccCCce
Confidence 4557999999999998864 45555 8999999999 9999999999999855 68899999999985 5999
Q ss_pred EEEEEEEEeeCCCCCceeeeeccccccccCceeec-cc---CccccccccccccccccccCcCCCceEEEEEEEE
Q 024486 84 RALFELTLVDQSGKGKHKVHSHFDRALESGPYTLK-YR---GSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGV 154 (267)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~i~v 154 (267)
.++++|+|+||.+...+. ...+...- ....|. .. +..||++.|+++++|++.+|++||+|+|+|.|..
T Consensus 114 ~~~~tfsLlDQ~~~~~~~-~~~~~p~p--~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 114 KQKVTLMLMDQGSSRRHL-GDAFKPDP--NSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT 185 (186)
T ss_pred eEEEEEEEEcCCCccccc-cceeccCC--ccccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEec
Confidence 999999999997532221 11111000 012232 11 4579999999999999899999999999999864
No 4
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.93 E-value=8.8e-26 Score=171.36 Aligned_cols=130 Identities=22% Similarity=0.378 Sum_probs=101.1
Q ss_pred EEEEEEEcccccccCC---CCCCeeeeCceeec--ceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceEEEEE
Q 024486 19 GSHQFTVKGYSLAKGM---GPGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (267)
Q Consensus 19 ~~~~w~I~nfs~~~~~---~~~~~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~~~~~ 87 (267)
|.++|+|+||+...+. +....++||+|+++ ||+|+|++||||.+.+ .++|||+||+++++ .|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~-~~~~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAG-KGTHISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCC-CCCEEEEEEEEecCCcccccCcceEEEE
Confidence 6899999999965542 23347999999986 9999999999999855 68899999999885 59999999
Q ss_pred EEEEeeCCCCCceeeeeccccccccCceeec----ccCccccccccccccccccc--cCcCCCceEEEEEEE
Q 024486 88 ELTLVDQSGKGKHKVHSHFDRALESGPYTLK----YRGSMWGYKRFFKRTSLETS--DYIKDDCLLINCTVG 153 (267)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~fi~~~~l~~~--~~l~dd~l~i~~~i~ 153 (267)
+|+|+||.+..... ..+.... ....|. ..+..||++.||++++|+++ +||+||+++|+|+|.
T Consensus 80 tfsLlDq~~~~~~~--~~~~~~~--~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 80 TFMLLDQNNREHVI--DAFRPDL--SSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEEECCCCCCCCc--EeecCCc--ccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 99999997544321 1111100 013343 34557999999999999865 999999999999984
No 5
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.93 E-value=9.1e-26 Score=174.49 Aligned_cols=132 Identities=23% Similarity=0.363 Sum_probs=103.3
Q ss_pred EEEEEEEcccccccCC--C-CCCeeeeCceeec--ceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceEEEEE
Q 024486 19 GSHQFTVKGYSLAKGM--G-PGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (267)
Q Consensus 19 ~~~~w~I~nfs~~~~~--~-~~~~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~~~~~ 87 (267)
|.|+|+|.|||.++.. . .++.+.|+.|.+| ||+|+|++||||...+ .++|||+||++.++ .|++.+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~-~~~~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSG-EGSHLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCC-CCCEEEEEEEEecCCcccccCCceeeEE
Confidence 6899999999988763 3 4689999999999 9999999999998854 57899999999884 69999999
Q ss_pred EEEEeeCCCCC--c-eeeeeccccccccCceeec--------ccCccccccccccccccccccCcCCCceEEEEEEE
Q 024486 88 ELTLVDQSGKG--K-HKVHSHFDRALESGPYTLK--------YRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVG 153 (267)
Q Consensus 88 ~~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~--------~~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~i~ 153 (267)
+|+|+||.+.. . ..+...+... .....|. .++.+|||..||++++|++.+||.||+|+|+|+|+
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~--~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPD--PTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcC--CchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEeC
Confidence 99999997641 1 1111111000 0112232 23467999999999999989999999999999984
No 6
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.93 E-value=4.3e-25 Score=167.85 Aligned_cols=126 Identities=17% Similarity=0.264 Sum_probs=102.2
Q ss_pred eEEEEEEEcccccccCCCCCCeeeeCceeecceeEEEEEEcCCCCCC-CCCCeEEEEEEEccC----CceEEEEEEEEEe
Q 024486 18 NGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPE-DGALYVSVFIALASE----GTDVRALFELTLV 92 (267)
Q Consensus 18 ~~~~~w~I~nfs~~~~~~~~~~~~S~~F~~gg~~W~l~~yp~g~~~~-~~~~~lsl~l~~~~~----~~~~~~~~~~~l~ 92 (267)
.++|.|+|+|||.+. +.+.||.|.+||++|+|++||+|.... ...++|||||.|... .|++.|+|+|+|+
T Consensus 2 ~~~~~~~I~~~S~l~-----e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~ 76 (137)
T cd03772 2 EATFSFTVERFSRLS-----ESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRII 76 (137)
T ss_pred CcEEEEEECCcccCC-----CcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEE
Confidence 478999999999873 689999999999999999999996532 235899999999763 4899999999999
Q ss_pred eCCCCCceeeeeccccccccCceeecccCccccccccccccccc--cccCcCCCceEEEEEEEEEe
Q 024486 93 DQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE--TSDYIKDDCLLINCTVGVVR 156 (267)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~--~~~~l~dd~l~i~~~i~v~~ 156 (267)
|+.+....... ...+.|......|||.+|++|++|. ++|||.||+|+|+|+|+|..
T Consensus 77 ~~~~~~~~~~~--------~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 77 NYKDDEPSFSR--------RISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred cCCCCcccEEE--------eeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 99853221111 1124565566799999999999993 68999999999999998864
No 7
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.93 E-value=9.5e-26 Score=174.07 Aligned_cols=131 Identities=27% Similarity=0.439 Sum_probs=101.4
Q ss_pred EEEEEEEcccccccCC---CCCCeeeeCceeec--ceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceEEEEE
Q 024486 19 GSHQFTVKGYSLAKGM---GPGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (267)
Q Consensus 19 ~~~~w~I~nfs~~~~~---~~~~~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~~~~~ 87 (267)
|+|+|+|+|||.+++. +.++.++||.|.+| ||+|+|++||+|...+ .++||||||++.++ .|++.++|
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~-~~~~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTG-KGTHLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCC-CCCEEEEEEEEeccCCCccccCCccceE
Confidence 5899999999998762 45679999999999 9999999999998643 46899999999764 49999999
Q ss_pred EEEEeeCCCC--CceeeeeccccccccCceeec-----ccCccccccccccccccccccCcCCCceEEEEEEE
Q 024486 88 ELTLVDQSGK--GKHKVHSHFDRALESGPYTLK-----YRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVG 153 (267)
Q Consensus 88 ~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~i~ 153 (267)
+|+|+||.++ ... ....+... .....|. ....+|||..|+++++|++.|||.||+|+|+|+|.
T Consensus 80 ~~~l~d~~~~~~~~~-~~~~~~~~--~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 80 TLTLLDQSDDSKRKH-ITETFMPD--PNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEEECCCCccccCc-eEEEEEcC--CchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence 9999999864 111 00010000 0012222 24678999999999999878999999999999983
No 8
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.93 E-value=4e-25 Score=167.30 Aligned_cols=118 Identities=24% Similarity=0.450 Sum_probs=97.5
Q ss_pred EEEEEEcccccccCCCCCCeeeeCceeecceeEEEEEEcCCCCCCCCCCeEEEEEEEcc---------CCceEEEEEEEE
Q 024486 20 SHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS---------EGTDVRALFELT 90 (267)
Q Consensus 20 ~~~w~I~nfs~~~~~~~~~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~---------~~~~~~~~~~~~ 90 (267)
+|.|+|+|||.+. +.+.||.|.+||++|+|.+||+|.. ..+||||||.+.+ .+|.+.|+|+|+
T Consensus 2 ~f~w~I~~fS~~~-----~~~~S~~F~vGG~~W~l~~yP~G~~---~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~ 73 (134)
T cd03775 2 SFTWRIKNWSELE-----KKVHSPKFKCGGFEWRILLFPQGNS---QTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALV 73 (134)
T ss_pred cEEEEECCcccCC-----cceeCCCEEECCeeEEEEEeCCCCC---CCCeEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence 5899999999853 6899999999999999999999976 3789999999864 358899999999
Q ss_pred EeeCCCCCceeeeeccccccccCceeecccCccccccccccccccc------cccCcCCCceEEEEEEE
Q 024486 91 LVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE------TSDYIKDDCLLINCTVG 153 (267)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~------~~~~l~dd~l~i~~~i~ 153 (267)
|+|+.++...... ...+.|.....+|||.+|+++++|+ ++|||+||+|+|++.|.
T Consensus 74 l~n~~~~~~~~~~--------~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 74 ISNPGDPSIQLSN--------VAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EEcCCCCccceEc--------cceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 9999744322111 1236676667899999999999996 47999999999999873
No 9
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.93 E-value=1.1e-25 Score=173.17 Aligned_cols=131 Identities=22% Similarity=0.320 Sum_probs=100.9
Q ss_pred EEEEEEEcccccccC-CCCCC--eeeeCceee--cceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceEEEEE
Q 024486 19 GSHQFTVKGYSLAKG-MGPGK--CLSSDVFTV--GGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALF 87 (267)
Q Consensus 19 ~~~~w~I~nfs~~~~-~~~~~--~~~S~~F~~--gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~~~~~ 87 (267)
|+|+|+|+|||.+++ ++.++ .+.||+|.+ |||+|+|++||+|...+ ..+|||+||++.++ +|++.+++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~-~~~~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEAR-CPNYISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCC-CCCEEEEEEEEeccCCCcccCCccccee
Confidence 689999999997654 56666 488999985 79999999999998854 57899999999763 39999999
Q ss_pred EEEEeeCCCCCceeeeeccccccccCceeec-----ccCccccccccccccccccccCcCCCceEEEEEEE
Q 024486 88 ELTLVDQSGKGKHKVHSHFDRALESGPYTLK-----YRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVG 153 (267)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~i~ 153 (267)
+|+|+||.++..+.. ..... ......|. .++..|||..||++++|+..+||+||+|+|+|+|.
T Consensus 80 ~~~lldq~~~~~~~~-~~~~~--~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIH-ETMMS--KPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccE-EEEEc--CCChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 999999986433211 00000 00112332 13468999999999999888999999999999984
No 10
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.93 E-value=3.2e-25 Score=171.31 Aligned_cols=134 Identities=24% Similarity=0.386 Sum_probs=101.9
Q ss_pred eEEEEEEEccccccc-CCCCCCeeeeCce-eecceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------Cce-EEEEEE
Q 024486 18 NGSHQFTVKGYSLAK-GMGPGKCLSSDVF-TVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTD-VRALFE 88 (267)
Q Consensus 18 ~~~~~w~I~nfs~~~-~~~~~~~~~S~~F-~~gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~-~~~~~~ 88 (267)
+..|+|+|+|||.++ +.+.++.+.||+| .+|||+|+|++||||+.. .++||||||++.++ .|+ +.++++
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~--~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t 78 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES--YPGYTGLYFHLCSGENDDVLEWPCPNRQAT 78 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC--CCCcceEEEEEecCCccccccCcceeEEEE
Confidence 357999999999986 5677889999999 889999999999999985 57899999999874 388 589999
Q ss_pred EEEeeCCCCCce--eeeecccccc--cc---C------ce----eec-------ccCccccccccccccccccccCcCCC
Q 024486 89 LTLVDQSGKGKH--KVHSHFDRAL--ES---G------PY----TLK-------YRGSMWGYKRFFKRTSLETSDYIKDD 144 (267)
Q Consensus 89 ~~l~~~~~~~~~--~~~~~~~~~~--~~---~------~~----~~~-------~~~~~~G~~~fi~~~~l~~~~~l~dd 144 (267)
|+|+||...... .++..++..- .+ . +. ... .++.+|||+.|+++++|++.+||+||
T Consensus 79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~d 158 (167)
T cd03771 79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKGD 158 (167)
T ss_pred EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcCC
Confidence 999999742221 1211111111 00 0 00 011 14568999999999999888899999
Q ss_pred ceEEEEEEE
Q 024486 145 CLLINCTVG 153 (267)
Q Consensus 145 ~l~i~~~i~ 153 (267)
+|.|+++++
T Consensus 159 tl~i~~~~~ 167 (167)
T cd03771 159 DLIILLDFE 167 (167)
T ss_pred EEEEEEEeC
Confidence 999999873
No 11
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.92 E-value=6e-25 Score=166.17 Aligned_cols=124 Identities=27% Similarity=0.520 Sum_probs=100.0
Q ss_pred eEEEEEEEcccccccCCCCCCeeeeCceeecceeEEEEEEcCCCCCCCCCCeEEEEEEEccC-CceEEEEEEEEEeeCCC
Q 024486 18 NGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE-GTDVRALFELTLVDQSG 96 (267)
Q Consensus 18 ~~~~~w~I~nfs~~~~~~~~~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~-~~~~~~~~~~~l~~~~~ 96 (267)
.++++|+|+|||.+++ .++++.|+.|.+||++|+|++||+|...+ .++|||+||++..+ .|++.++|+|+|+|+.+
T Consensus 4 ~~~~~~~I~~fS~~~~--~~~~~~S~~F~vgG~~W~i~~yP~G~~~~-~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~~ 80 (132)
T cd03773 4 YDSATFTLENFSTLRQ--SADPVYSDPLNVDGLCWRLKVYPDGNGEV-RGNFLSVFLELCSGLGEASKYEYRVEMVHQAN 80 (132)
T ss_pred CcccEEEECChhhhhc--CCcceeCCCeEeCCccEEEEEECCCCCCC-CCCEEEEEEEeecCCCCceeEEEEEEEEcCCC
Confidence 4579999999998864 46799999999999999999999998743 57899999998874 57889999999999953
Q ss_pred CCceeeeeccccccccCceeecccCccccccccccccccccccCcCC--CceEEEEEEE
Q 024486 97 KGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKD--DCLLINCTVG 153 (267)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~l~d--d~l~i~~~i~ 153 (267)
+..+. ... ..+.|. .+.+|||..|+++++|+++|||.| |+|+|+|.|+
T Consensus 81 ~~~~~-~~~-------~~~~f~-~~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 81 PTKNI-KRE-------FASDFE-VGECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred Cccce-EEe-------cccccc-CCCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 33221 111 113343 246799999999999987899998 9999999986
No 12
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.92 E-value=3.2e-24 Score=164.47 Aligned_cols=137 Identities=18% Similarity=0.295 Sum_probs=103.3
Q ss_pred eeeeeEEEEEEEcccccccCC---CCCCeeeeCceeec--ceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------Cce
Q 024486 14 NETVNGSHQFTVKGYSLAKGM---GPGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTD 82 (267)
Q Consensus 14 ~~~~~~~~~w~I~nfs~~~~~---~~~~~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~ 82 (267)
.....|.++|+|.||+.+.+. +....++||+|+.+ ||+|+|++||||++.+ .++|||||++++++ .||
T Consensus 14 ~~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~-~g~~LSly~~l~~Ge~D~~L~WP 92 (164)
T cd03778 14 ASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTG-RGTHLSLFFVVMKGPNDALLRWP 92 (164)
T ss_pred ccccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCC-CCCEEEEEEEEecCCcCcccCCc
Confidence 345689999999999987653 23458999999874 8999999999999855 58899999999985 399
Q ss_pred EEEEEEEEEeeCCCCCceeeeeccccccc--cCceeecccCcccccccccccccccc-ccCcCCCceEEEEEEE
Q 024486 83 VRALFELTLVDQSGKGKHKVHSHFDRALE--SGPYTLKYRGSMWGYKRFFKRTSLET-SDYIKDDCLLINCTVG 153 (267)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~~~fi~~~~l~~-~~~l~dd~l~i~~~i~ 153 (267)
+..+++|+|+||++..+. ...+..... .........+.+|||+.|+++++|+. .+|++||+|.|+|.|.
T Consensus 93 f~~~itl~llDQ~~r~hi--~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 93 FNQKVTLMLLDQNNREHV--IDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIVD 164 (164)
T ss_pred eeeEEEEEEECCCCCCcc--eeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEEC
Confidence 999999999999753321 111111111 11001123455799999999999964 7999999999999873
No 13
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.87 E-value=1.6e-21 Score=145.50 Aligned_cols=120 Identities=34% Similarity=0.618 Sum_probs=97.2
Q ss_pred EEEEEEEcccccccCCCCCCeeeeCceeecceeEEEEEEcCCCCCCCCCCeEEEEEEEccC-----CceEEEEEEEEEee
Q 024486 19 GSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE-----GTDVRALFELTLVD 93 (267)
Q Consensus 19 ~~~~w~I~nfs~~~~~~~~~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~-----~~~~~~~~~~~l~~ 93 (267)
++|+|+|.+|+. ..++.+.||.|.++|+.|+|++||+|... +.+||||||.|.+. .|++.++|+|+|++
T Consensus 1 ~~~~~~i~~~~~----~~~~~~~S~~f~~~g~~W~l~~~p~~~~~--~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~ 74 (126)
T cd00121 1 GKHTWKIVNFSE----LEGESIYSPPFEVGGYKWRIRIYPNGDGE--SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVN 74 (126)
T ss_pred CEEEEEECCCCC----CCCcEEECCCEEEcCEeEEEEEEcCCCCC--CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence 479999999998 23589999999999999999999998764 57899999999874 39999999999999
Q ss_pred CCCCCceeeeeccccccccCceee-cccCccccccccccccccccccCcCCCceEEEEEEE
Q 024486 94 QSGKGKHKVHSHFDRALESGPYTL-KYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVG 153 (267)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~i~ 153 (267)
+++.+...... ...+ .....+|||.+|+++++|.+..++.||+|+|+|+|.
T Consensus 75 ~~~~~~~~~~~---------~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 75 QNGGKSLSKSF---------THVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCccceEec---------cCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 98333221111 1222 245789999999999999866569999999999983
No 14
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.84 E-value=6.2e-21 Score=145.65 Aligned_cols=135 Identities=20% Similarity=0.351 Sum_probs=100.7
Q ss_pred EEEEEEEcccccccCC-CCCCeeeeCceeec-ceeEEEEEEcCCCCCCCCCCeEEEEEEEccCC------ceE-EEEEEE
Q 024486 19 GSHQFTVKGYSLAKGM-GPGKCLSSDVFTVG-GYDWAIYFYPDGKNPEDGALYVSVFIALASEG------TDV-RALFEL 89 (267)
Q Consensus 19 ~~~~w~I~nfs~~~~~-~~~~~~~S~~F~~g-g~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~~------~~~-~~~~~~ 89 (267)
..++|+|.||+.+.+. ..+..++||+|+.+ ||+.+|++||||++....++|+|||+++++++ ||+ .-+++|
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl 81 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII 81 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence 4689999999976653 35678999999985 99999999999987544688999999999863 995 569999
Q ss_pred EEeeCCCCCcee--eeecccccc--ccC----ceee--------------cccCccccccccccccccccccCcCCCceE
Q 024486 90 TLVDQSGKGKHK--VHSHFDRAL--ESG----PYTL--------------KYRGSMWGYKRFFKRTSLETSDYIKDDCLL 147 (267)
Q Consensus 90 ~l~~~~~~~~~~--~~~~~~~~~--~~~----~~~~--------------~~~~~~~G~~~fi~~~~l~~~~~l~dd~l~ 147 (267)
+|+||++....+ +...++... .+. ...| ..++.++||+.|++++.|++.+||+||++.
T Consensus 82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtlf 161 (167)
T cd03783 82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDLI 161 (167)
T ss_pred EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeEE
Confidence 999997522211 111111111 000 0001 125679999999999999989999999999
Q ss_pred EEEEEE
Q 024486 148 INCTVG 153 (267)
Q Consensus 148 i~~~i~ 153 (267)
|.++++
T Consensus 162 I~~~~~ 167 (167)
T cd03783 162 IFVDFE 167 (167)
T ss_pred EEEecC
Confidence 998763
No 15
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.83 E-value=4.1e-20 Score=136.87 Aligned_cols=113 Identities=31% Similarity=0.561 Sum_probs=91.5
Q ss_pred EcccccccCCCCCCeeeeCceeecceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceEEEEEEEEEeeCCCCC
Q 024486 25 VKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVRALFELTLVDQSGKG 98 (267)
Q Consensus 25 I~nfs~~~~~~~~~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~~~~~~~~l~~~~~~~ 98 (267)
|+|||+++ ..+.++.|+.|.++|++|+|.+||+|+ ++++++||+|..+ .|++.++++++++++.++.
T Consensus 1 i~nfs~l~--~~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 73 (119)
T PF00917_consen 1 IKNFSKLK--EGEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS 73 (119)
T ss_dssp ETTGGGHH--TSEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred CcccceEe--CCCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence 78999988 233456669999999999999999975 5789999999874 6999999999999998776
Q ss_pred ceeeeeccccccccCceeecccCccccccccccccccccccCcCCCceEEEEEEEE
Q 024486 99 KHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGV 154 (267)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~i~v 154 (267)
...... .+.|. ...+|||.+|+++++|.+..|+.||+++|+|+|+|
T Consensus 74 ~~~~~~---------~~~F~-~~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 74 ISKRIK---------SHSFN-NPSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEEEE---------CEEEC-TTSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred ceeeee---------eeEEe-eecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 322111 24453 34899999999999997666899999999999986
No 16
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.83 E-value=2.5e-20 Score=141.49 Aligned_cols=132 Identities=20% Similarity=0.363 Sum_probs=100.0
Q ss_pred EEEEEEEcccccccCC-CCCCeeeeCceee-cceeEEEEEEcCCCCCCCCCCeEEEEEEEccCC------ceEE-EEEEE
Q 024486 19 GSHQFTVKGYSLAKGM-GPGKCLSSDVFTV-GGYDWAIYFYPDGKNPEDGALYVSVFIALASEG------TDVR-ALFEL 89 (267)
Q Consensus 19 ~~~~w~I~nfs~~~~~-~~~~~~~S~~F~~-gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~~------~~~~-~~~~~ 89 (267)
..++|+|.||+++.+. +.+..++||+|+. .||+.++++||||++.. ++|||||+++++++ ||+. -+++|
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~--~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~ 79 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY--PGNLAIYLHLTSGPNDDQLQWPCPWQQATM 79 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC--CCEEEEEEEEeccCCCccccCCCcCCeEEE
Confidence 5689999999986653 5677999999987 49999999999999853 67999999999863 9999 89999
Q ss_pred EEeeCCCCCce--eeee--ccccccccC---ce--e--------ec-------ccCccccccccccccccccccCcCCCc
Q 024486 90 TLVDQSGKGKH--KVHS--HFDRALESG---PY--T--------LK-------YRGSMWGYKRFFKRTSLETSDYIKDDC 145 (267)
Q Consensus 90 ~l~~~~~~~~~--~~~~--~~~~~~~~~---~~--~--------~~-------~~~~~~G~~~fi~~~~l~~~~~l~dd~ 145 (267)
.|+||+++... .++. ++.....+. .+ . .. .++.++||+.|++++.|++..||+||+
T Consensus 80 ~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD~ 159 (167)
T cd03782 80 MLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGDD 159 (167)
T ss_pred EEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCCe
Confidence 99999752222 1111 111111111 11 0 00 126799999999999998899999999
Q ss_pred eEEEEEE
Q 024486 146 LLINCTV 152 (267)
Q Consensus 146 l~i~~~i 152 (267)
+.|-+++
T Consensus 160 ifi~~~~ 166 (167)
T cd03782 160 VIFLLTM 166 (167)
T ss_pred EEEEEec
Confidence 9998775
No 17
>PHA02713 hypothetical protein; Provisional
Probab=99.69 E-value=2.3e-17 Score=152.36 Aligned_cols=92 Identities=24% Similarity=0.333 Sum_probs=83.6
Q ss_pred CCCchHHHHHHhhhcCCCccEEEEeC-CeEEeeeeEEeeecCHHHHHhhcCcccCCC-cceEEecCCCHHHHHHhhhccc
Q 024486 170 PPSDMGQGLKDLLESEIGCDIVFEVG-DETFKAHKLILAARSPVFRAQFYGLVGDRN-LDKVVVKDVEPSIFKVMLLFSS 247 (267)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~Dv~i~~~-~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~-~~~i~~~~~~~~~~~~~l~~~Y 247 (267)
+...+++.|+++++++.+|||+|.++ +++|+|||.|||++|+||++||.+++.|.. ...|.|.++++++|+.+|+|+|
T Consensus 8 h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Y 87 (557)
T PHA02713 8 HNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLY 87 (557)
T ss_pred hhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhc
Confidence 34567899999999999999999997 899999999999999999999999999764 7899999999999999999999
Q ss_pred cCceecChhhHHHHHh
Q 024486 248 YSAFISTWKRIEKNAC 263 (267)
Q Consensus 248 t~~~~~~~~~v~~~~~ 263 (267)
|++ ++.+|+++++.
T Consensus 88 t~~--i~~~nv~~ll~ 101 (557)
T PHA02713 88 NRH--ISSMNVIDVLK 101 (557)
T ss_pred CCC--CCHHHHHHHHH
Confidence 997 68899996653
No 18
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.66 E-value=7.7e-17 Score=148.68 Aligned_cols=94 Identities=27% Similarity=0.443 Sum_probs=89.2
Q ss_pred CCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccC
Q 024486 170 PPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYS 249 (267)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~ 249 (267)
+...+++.++.+++++.+|||++.+++++|+|||.||||+||||++||.+++.|..+.+|.+.++++.+++.+|+|+||+
T Consensus 19 h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~ 98 (571)
T KOG4441|consen 19 HSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTG 98 (571)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcc
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecChhhHHHHHh
Q 024486 250 AFISTWKRIEKNAC 263 (267)
Q Consensus 250 ~~~~~~~~v~~~~~ 263 (267)
.+.++.+||++++.
T Consensus 99 ~i~i~~~nVq~ll~ 112 (571)
T KOG4441|consen 99 KLEISEDNVQELLE 112 (571)
T ss_pred eEEechHhHHHHHH
Confidence 99999999997664
No 19
>smart00061 MATH meprin and TRAF homology.
Probab=99.66 E-value=1e-15 Score=108.53 Aligned_cols=89 Identities=25% Similarity=0.373 Sum_probs=72.1
Q ss_pred EEEEEcccccccCCCCCCeeeeCceeecceeEEEEEEcCCCCCCCCCCeEEEEEEEccC-----CceEEEEEEEEEeeCC
Q 024486 21 HQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE-----GTDVRALFELTLVDQS 95 (267)
Q Consensus 21 ~~w~I~nfs~~~~~~~~~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~-----~~~~~~~~~~~l~~~~ 95 (267)
++|+|+||+.+. .++.+.||+|.+||++|+|++||+ ++|||+||.|.+. .|++.|+++++|+|++
T Consensus 2 ~~~~~~~~~~~~---~~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~ 71 (95)
T smart00061 2 LSHTFKNVSRLE---EGESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN 71 (95)
T ss_pred ceeEEEchhhcc---cCceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence 579999999764 467899999999999999999998 4689999999763 5899999999999998
Q ss_pred CCCceeeeeccccccccCceeecccCccccccccc
Q 024486 96 GKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFF 130 (267)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi 130 (267)
++.... ...+.|.. ..+|||.+|+
T Consensus 72 ~~~~~~----------~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 72 GKSLSK----------KDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCEEee----------eeeEEEcC-CCccceeeEC
Confidence 754311 11355654 6889999875
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=99.62 E-value=5.4e-16 Score=141.19 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=74.6
Q ss_pred HHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEe--cCCCHHHHHHhhhccccCceec
Q 024486 176 QGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVV--KDVEPSIFKVMLLFSSYSAFIS 253 (267)
Q Consensus 176 ~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~--~~~~~~~~~~~l~~~Yt~~~~~ 253 (267)
+.+..++..+.++||++.+| ++|+|||.|||++||||++||.+++.|+.. .|.+ .++++++++.+|+|+|||++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~i 88 (480)
T PHA02790 11 KNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYI 88 (480)
T ss_pred hhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEE
Confidence 45566778889999887766 599999999999999999999999998854 4554 4999999999999999999999
Q ss_pred ChhhHHHHH
Q 024486 254 TWKRIEKNA 262 (267)
Q Consensus 254 ~~~~v~~~~ 262 (267)
+.+||++++
T Consensus 89 t~~nV~~ll 97 (480)
T PHA02790 89 DSHNVVNLL 97 (480)
T ss_pred ecccHHHHH
Confidence 999999776
No 21
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.61 E-value=8.4e-16 Score=112.31 Aligned_cols=84 Identities=33% Similarity=0.490 Sum_probs=72.7
Q ss_pred HHHhhhcCCCccEEEEeC-CeEEeeeeEEeeecCHHHHHhhcCc-ccCCCcceEEecCCCHHHHHHhhhccccCceecC-
Q 024486 178 LKDLLESEIGCDIVFEVG-DETFKAHKLILAARSPVFRAQFYGL-VGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFIST- 254 (267)
Q Consensus 178 ~~~~~~~~~~~Dv~i~~~-~~~~~~hk~iL~~~s~~f~~~f~~~-~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~- 254 (267)
|+++++++.++|++|.++ +++|+|||.+|+++|+||+.+|.+. ..+.....|.++++++++|+.+++|+|++++.+.
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 467888999999999999 8999999999999999999999987 5666666899999999999999999999999998
Q ss_pred hhhHHHH
Q 024486 255 WKRIEKN 261 (267)
Q Consensus 255 ~~~v~~~ 261 (267)
.+++.++
T Consensus 81 ~~~~~~l 87 (111)
T PF00651_consen 81 DENVEEL 87 (111)
T ss_dssp TTTHHHH
T ss_pred HHHHHHH
Confidence 8777743
No 22
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.60 E-value=4.6e-16 Score=131.92 Aligned_cols=86 Identities=28% Similarity=0.442 Sum_probs=80.8
Q ss_pred CchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccCce
Q 024486 172 SDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSAF 251 (267)
Q Consensus 172 ~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~ 251 (267)
.++.+++.+++.++.++||++++++++|+|||.|||+||.|||+|+.++|.|+.+..|.+.+-+.++|+.+|+|||||++
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhh
Q 024486 252 ISTWKR 257 (267)
Q Consensus 252 ~~~~~~ 257 (267)
.+....
T Consensus 109 ~l~~~~ 114 (620)
T KOG4350|consen 109 DLAGVE 114 (620)
T ss_pred ecccch
Confidence 876443
No 23
>PHA03098 kelch-like protein; Provisional
Probab=99.49 E-value=2.7e-14 Score=132.04 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=70.0
Q ss_pred cCCCccEEEEe--CCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccCceecChhhHHHH
Q 024486 184 SEIGCDIVFEV--GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTWKRIEKN 261 (267)
Q Consensus 184 ~~~~~Dv~i~~--~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~~~v~~~ 261 (267)
++.+||++|.+ +|++|+|||.||+++|+||++||.+++. +..|.+++ ++++|+.+|+|+|||++.++.+|++++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~l 81 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDI 81 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHH
Confidence 78899999998 9999999999999999999999999887 56899999 999999999999999999999999855
Q ss_pred H
Q 024486 262 A 262 (267)
Q Consensus 262 ~ 262 (267)
+
T Consensus 82 l 82 (534)
T PHA03098 82 L 82 (534)
T ss_pred H
Confidence 4
No 24
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.3e-14 Score=128.07 Aligned_cols=126 Identities=23% Similarity=0.437 Sum_probs=102.4
Q ss_pred eeeEEEEEEEcccccccCCCCCCeeeeCceeecceeEEEEEEcCCCCCCCCCCeEEEEEEEccC--------CceEEEEE
Q 024486 16 TVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE--------GTDVRALF 87 (267)
Q Consensus 16 ~~~~~~~w~I~nfs~~~~~~~~~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~--------~~~~~~~~ 87 (267)
...-++.|+|.+|+.+. .++.||+|.+||+.|+|.++|+|... .+ +||||+..+. .|.|.|+|
T Consensus 36 ~~~~sftW~vk~wsel~-----~k~~Sp~F~vg~~twki~lfPqG~nq---~~-~sVyLe~~pqe~e~~~gk~~~ccaqF 106 (1089)
T COG5077 36 LLEMSFTWKVKRWSELA-----KKVESPPFSVGGHTWKIILFPQGNNQ---CN-VSVYLEYEPQELEETGGKYYDCCAQF 106 (1089)
T ss_pred HhhcccceecCChhhhh-----hhccCCcccccCeeEEEEEecccCCc---cc-cEEEEEeccchhhhhcCcchhhhhhe
Confidence 45678999999999887 47889999999999999999999873 33 9999988762 29999999
Q ss_pred EEEEeeCCCCCceeeeeccccccccCceeecccCccccccccccccccc-----cccCcCCCceEEEEEEEEEeee
Q 024486 88 ELTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE-----TSDYIKDDCLLINCTVGVVRNR 158 (267)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~-----~~~~l~dd~l~i~~~i~v~~~~ 158 (267)
.|.|-|+..+....+ .++.|.|+.-..+|||.+|+....+. -..|+.+|++.|.+.|.|.++.
T Consensus 107 af~Is~p~~pti~~i--------N~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdP 174 (1089)
T COG5077 107 AFDISNPKYPTIEYI--------NKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDP 174 (1089)
T ss_pred eeecCCCCCCchhhh--------hcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCC
Confidence 999988876443322 22337787778999999999998872 2458899999999999999863
No 25
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.45 E-value=1.4e-13 Score=95.92 Aligned_cols=72 Identities=33% Similarity=0.516 Sum_probs=66.5
Q ss_pred cEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccCceecChhhHHH
Q 024486 189 DIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTWKRIEK 260 (267)
Q Consensus 189 Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~~~v~~ 260 (267)
|+++.++++.+++||.+|+++|+||++||.+.+.+.....+.++++++++|+.+|+|+|++++.++..++..
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~ 72 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEE 72 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHH
Confidence 688999999999999999999999999999887777778999999999999999999999999998877663
No 26
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.30 E-value=3.1e-12 Score=111.06 Aligned_cols=101 Identities=29% Similarity=0.397 Sum_probs=89.8
Q ss_pred CCCCCCCchHHHHHHhhhcCCCccEEEEeCC-----eEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHH
Q 024486 166 SIPVPPSDMGQGLKDLLESEIGCDIVFEVGD-----ETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFK 240 (267)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~Dv~i~~~~-----~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~ 240 (267)
..+.+......+...++++...+|+.+++++ +.++|||.+||..|.+|++||.+++.++...+|.++++.+.+|.
T Consensus 93 nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl 172 (521)
T KOG2075|consen 93 NWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFL 172 (521)
T ss_pred ccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhH
Confidence 3455556666777888899999999999973 68999999999999999999999999998889999999999999
Q ss_pred HhhhccccCceecChhhHH---HHHhhhc
Q 024486 241 VMLLFSSYSAFISTWKRIE---KNACVYM 266 (267)
Q Consensus 241 ~~l~~~Yt~~~~~~~~~v~---~~~~~~~ 266 (267)
.+|+|||.+.+.+..+++. +.+++|+
T Consensus 173 ~~L~flYsdev~~~~dtvi~tl~~AkKY~ 201 (521)
T KOG2075|consen 173 AFLRFLYSDEVKLAADTVITTLYAAKKYL 201 (521)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHhh
Confidence 9999999999999999988 6677775
No 27
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.94 E-value=8.4e-09 Score=88.50 Aligned_cols=160 Identities=26% Similarity=0.452 Sum_probs=116.3
Q ss_pred EEEcccccccCCCCCCeeeeCceeecceeEEEEEEcCCCCCCCCCCeEEEEEEEccC-CceEEEEEEEEEeeCCCCCc-e
Q 024486 23 FTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE-GTDVRALFELTLVDQSGKGK-H 100 (267)
Q Consensus 23 w~I~nfs~~~~~~~~~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~-~~~~~~~~~~~l~~~~~~~~-~ 100 (267)
|.|.+|+... ..++|..|..||..|++.+||.|+ +++.|+.+... +|.+.+.+.|.+.|+..... .
T Consensus 8 ~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~v~n~~~~~~~~ 75 (297)
T KOG1987|consen 8 WVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSPGWERYAKLRLTVVNQKSEKYLS 75 (297)
T ss_pred eeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCCCcceeEEEEEEEccCCCcceee
Confidence 9999998766 678899999999999999999975 57888877664 79999999999999976532 1
Q ss_pred eeeeccccccccCceeeccc--CccccccccccccccccccCcCCCceEEEEEEEEEeeecCCCCccCCCCCCCchHHHH
Q 024486 101 KVHSHFDRALESGPYTLKYR--GSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRNRLEGPKQYSIPVPPSDMGQGL 178 (267)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~--~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 178 (267)
.... ....+..+ -..||+..+++...+. .++
T Consensus 76 ~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~------------~~~--------------------------- 108 (297)
T KOG1987|consen 76 TVEE--------GFSWFRFNKVLKEWGFGKMLPLTLLI------------DCS--------------------------- 108 (297)
T ss_pred eeee--------eEEeccccccccccCcccccChHHhh------------ccc---------------------------
Confidence 1100 00111111 3456655444443332 111
Q ss_pred HHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccCceecChhhH
Q 024486 179 KDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTWKRI 258 (267)
Q Consensus 179 ~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~~~v 258 (267)
+..+.+|+.++++++++|++|+.....+.....+.+.+..+..++.+..|.|+..-....+.+
T Consensus 109 -----------------~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~ 171 (297)
T KOG1987|consen 109 -----------------NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERI 171 (297)
T ss_pred -----------------CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHh
Confidence 555999999999999999999988776666666788899999999999999996655444443
No 28
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.85 E-value=1.8e-09 Score=83.95 Aligned_cols=84 Identities=25% Similarity=0.290 Sum_probs=65.7
Q ss_pred chHHHHHHhhhcCCCccEEEEeC---CeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccC
Q 024486 173 DMGQGLKDLLESEIGCDIVFEVG---DETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYS 249 (267)
Q Consensus 173 ~~~~~~~~~~~~~~~~Dv~i~~~---~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~ 249 (267)
.++.-..+++.++.++|++|.++ ++.++|||.|||+||.+.. |..+ ....+.+..++|.++++|..++++|||+
T Consensus 52 RLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~-~dekse~~~~dDad~Ea~~t~iRWIYTD 128 (280)
T KOG4591|consen 52 RLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANG-GDEKSEELDLDDADFEAFHTAIRWIYTD 128 (280)
T ss_pred HHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccC-CCcchhhhcccccCHHHHHHhheeeecc
Confidence 34444567888999999999997 5789999999999998665 2222 2233456788999999999999999999
Q ss_pred ceecChhhHH
Q 024486 250 AFISTWKRIE 259 (267)
Q Consensus 250 ~~~~~~~~v~ 259 (267)
++.+..+.+.
T Consensus 129 Eidfk~dD~~ 138 (280)
T KOG4591|consen 129 EIDFKEDDEF 138 (280)
T ss_pred ccccccchHH
Confidence 9988665443
No 29
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.69 E-value=4.4e-08 Score=90.59 Aligned_cols=81 Identities=27% Similarity=0.446 Sum_probs=63.4
Q ss_pred CCchHHHHHHhhhc----CCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCc------------ceEEecCC
Q 024486 171 PSDMGQGLKDLLES----EIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNL------------DKVVVKDV 234 (267)
Q Consensus 171 ~~~~~~~~~~~~~~----~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~------------~~i~~~~~ 234 (267)
...+...|..++.. ..+.||+|.||++.|+|||.||++||++|+.+|......+.. ..|.++++
T Consensus 538 ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i 617 (1267)
T KOG0783|consen 538 SSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDI 617 (1267)
T ss_pred cccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccC
Confidence 34455566666654 367999999999999999999999999999999753322222 23447899
Q ss_pred CHHHHHHhhhccccCce
Q 024486 235 EPSIFKVMLLFSSYSAF 251 (267)
Q Consensus 235 ~~~~~~~~l~~~Yt~~~ 251 (267)
.+..|+.+|+||||+..
T Consensus 618 ~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 618 PPLMFEILLHYIYTDTL 634 (1267)
T ss_pred CHHHHHHHHHHHhcccc
Confidence 99999999999999954
No 30
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.53 E-value=2.8e-07 Score=79.01 Aligned_cols=85 Identities=13% Similarity=0.179 Sum_probs=75.7
Q ss_pred HHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEe----cCCCHHHHHHhhhccccCceec
Q 024486 178 LKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVV----KDVEPSIFKVMLLFSSYSAFIS 253 (267)
Q Consensus 178 ~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~----~~~~~~~~~~~l~~~Yt~~~~~ 253 (267)
...++.++..+||++.+-|.+++.||.-|. .|+||.+||.|.+.|++++.|.+ +.|+.+++..++.=+|.++++|
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI 138 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEI 138 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheec
Confidence 345677899999999999999999999995 78999999999999999987766 4899999999999999999999
Q ss_pred ChhhHHHHHh
Q 024486 254 TWKRIEKNAC 263 (267)
Q Consensus 254 ~~~~v~~~~~ 263 (267)
..+.|..+++
T Consensus 139 ~l~dv~gvlA 148 (488)
T KOG4682|consen 139 KLSDVVGVLA 148 (488)
T ss_pred cHHHHHHHHH
Confidence 9999885543
No 31
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.20 E-value=3e-07 Score=75.04 Aligned_cols=83 Identities=18% Similarity=0.191 Sum_probs=67.7
Q ss_pred CCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCc--ceEEecCCCHHHHHHhhhccc
Q 024486 170 PPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNL--DKVVVKDVEPSIFKVMLLFSS 247 (267)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~--~~i~~~~~~~~~~~~~l~~~Y 247 (267)
+...+++++.+.+......|+-|+.....|+|||++|++|||+|+.+....-..... -.|+..+++.++|..+|+++|
T Consensus 113 ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~ 192 (401)
T KOG2838|consen 113 EANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLI 192 (401)
T ss_pred chhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHH
Confidence 345677888888777788999999999999999999999999999887653221111 256778999999999999999
Q ss_pred cCcee
Q 024486 248 YSAFI 252 (267)
Q Consensus 248 t~~~~ 252 (267)
||+.-
T Consensus 193 tgEfg 197 (401)
T KOG2838|consen 193 TGEFG 197 (401)
T ss_pred hcccc
Confidence 99874
No 32
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.17 E-value=1e-06 Score=81.85 Aligned_cols=67 Identities=19% Similarity=0.183 Sum_probs=56.7
Q ss_pred CccEEEEe-CCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccc-cCceec
Q 024486 187 GCDIVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSS-YSAFIS 253 (267)
Q Consensus 187 ~~Dv~i~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Y-t~~~~~ 253 (267)
.-|+.|.+ +|+.++||+++|++|.+||..||..-+.|.....++.-.+..+.+..+|+|+| +++..+
T Consensus 710 ~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~ 778 (1267)
T KOG0783|consen 710 TMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVEL 778 (1267)
T ss_pred ceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHH
Confidence 34666666 77779999999999999999999998999888777777788999999999999 555543
No 33
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=6.5e-05 Score=74.90 Aligned_cols=119 Identities=12% Similarity=0.108 Sum_probs=91.9
Q ss_pred EEEEcccccccCCCCCCeeeeCceeecceeEEEEEEcCCCCCCCCCCeEEEEEEEccCC----ceEEEEEEEEEeeCCCC
Q 024486 22 QFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASEG----TDVRALFELTLVDQSGK 97 (267)
Q Consensus 22 ~w~I~nfs~~~~~~~~~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~~----~~~~~~~~~~l~~~~~~ 97 (267)
.|.+.+..... ....||.|..|+.+|++.+.|++.. ...+++|+++..++ |.+.+++.+.+.| ..+
T Consensus 30 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~-~~~ 99 (1093)
T KOG1863|consen 30 TIDGIDDKSLL-----YRALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSLKSWSCGAQAVLRVKN-TID 99 (1093)
T ss_pred cccCcCcchhh-----hHhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCCcceEecchhhhcccc-CCC
Confidence 35555544433 3567999999999999999999875 33499999998742 9999999999999 333
Q ss_pred CceeeeeccccccccCceeecccCcccccccccccccc--ccccCcCCCceEEEEEEEEEee
Q 024486 98 GKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRN 157 (267)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l--~~~~~l~dd~l~i~~~i~v~~~ 157 (267)
.... ......|.|.....+||+.+|+.++++ +..+|+.+|++.+++.|.+...
T Consensus 100 ~~~~-------~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~ 154 (1093)
T KOG1863|consen 100 NLPD-------PEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQP 154 (1093)
T ss_pred Cchh-------hhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecC
Confidence 3321 112234777778899999999999999 3689999999999999999864
No 34
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.36 E-value=9.6e-05 Score=65.64 Aligned_cols=80 Identities=21% Similarity=0.312 Sum_probs=67.3
Q ss_pred eeeeeEEEEEEEcccccccCC---CCCCeeeeCceee--cceeEEEEEEcCCCCCCCCCCeEEEEEEEccCC------ce
Q 024486 14 NETVNGSHQFTVKGYSLAKGM---GPGKCLSSDVFTV--GGYDWAIYFYPDGKNPEDGALYVSVFIALASEG------TD 82 (267)
Q Consensus 14 ~~~~~~~~~w~I~nfs~~~~~---~~~~~~~S~~F~~--gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~~------~~ 82 (267)
.....|..+|+|.++...+.. ..+..+.|+.|+. .||+.+.++|-||++.+ .+.++|+|+....++ |+
T Consensus 275 ~~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~-~~~~~s~~~~~~~ge~d~~l~wp 353 (391)
T KOG0297|consen 275 VRSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTG-KGTHLSLYFVVMRGEYDALLPWP 353 (391)
T ss_pred hhccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCC-CcceeeeeeeecccCcccccccC
Confidence 456789999999999655542 3456888999986 59999999999998854 688999999998853 99
Q ss_pred EEEEEEEEEeeC
Q 024486 83 VRALFELTLVDQ 94 (267)
Q Consensus 83 ~~~~~~~~l~~~ 94 (267)
++-++++.++++
T Consensus 354 f~~~v~~~l~dq 365 (391)
T KOG0297|consen 354 FRQKVTLMLLDQ 365 (391)
T ss_pred CCCceEEEEecc
Confidence 999999999999
No 35
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.97 E-value=0.00016 Score=59.43 Aligned_cols=83 Identities=23% Similarity=0.366 Sum_probs=54.6
Q ss_pred CchHHHHHHhhhcCCC-ccEEEEe-CC--------------eEEeeeeEEeeecCHHHHHhhcCcccCCCc---------
Q 024486 172 SDMGQGLKDLLESEIG-CDIVFEV-GD--------------ETFKAHKLILAARSPVFRAQFYGLVGDRNL--------- 226 (267)
Q Consensus 172 ~~~~~~~~~~~~~~~~-~Dv~i~~-~~--------------~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~--------- 226 (267)
.++-.++..+++.... -|+.+.+ +| .+++||++|.++||++||.++.....+.+.
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 4445566666665444 4444444 22 369999999999999999999875544322
Q ss_pred ceEEec-CCCHHHH-HHhhhccccCceecC
Q 024486 227 DKVVVK-DVEPSIF-KVMLLFSSYSAFIST 254 (267)
Q Consensus 227 ~~i~~~-~~~~~~~-~~~l~~~Yt~~~~~~ 254 (267)
..|.++ -|-|..| -.+|.++||+.+.++
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lDlS 329 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLDLS 329 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccchh
Confidence 345554 3344444 467899999998653
No 36
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.27 E-value=0.0084 Score=38.55 Aligned_cols=55 Identities=11% Similarity=0.231 Sum_probs=42.9
Q ss_pred EEEEe-CCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccc
Q 024486 190 IVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSS 247 (267)
Q Consensus 190 v~i~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Y 247 (267)
+++.. +|+.|.+.+.++ ..|..++.|+.....+.. .|.+++++...++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHH
Confidence 34444 788999998885 489999999976333332 79999999999999999986
No 37
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.58 E-value=0.0028 Score=54.68 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=49.9
Q ss_pred eEEeeeeEEeeecCHHHHHhhcCcccCCCcc----eEEecCCCHHHHHHhhhccccCceecChhhHH
Q 024486 197 ETFKAHKLILAARSPVFRAQFYGLVGDRNLD----KVVVKDVEPSIFKVMLLFSSYSAFISTWKRIE 259 (267)
Q Consensus 197 ~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~----~i~~~~~~~~~~~~~l~~~Yt~~~~~~~~~v~ 259 (267)
.+++||++++ .|++||..||.+++.|+..+ ...++.....+.+..++|+|+++..+.++-..
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~ 366 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVAS 366 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHh
Confidence 4599999998 58889999999999885422 34566788889999999999999988765443
No 38
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=95.57 E-value=0.01 Score=41.51 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=48.1
Q ss_pred EEEEeCCeEEeeeeEEee-ecCHHHHHhhcCc---ccCCCcceEEecCCCHHHHHHhhhcccc-CceecC
Q 024486 190 IVFEVGDETFKAHKLILA-ARSPVFRAQFYGL---VGDRNLDKVVVKDVEPSIFKVMLLFSSY-SAFIST 254 (267)
Q Consensus 190 v~i~~~~~~~~~hk~iL~-~~s~~f~~~f~~~---~~e~~~~~i~~~~~~~~~~~~~l~~~Yt-~~~~~~ 254 (267)
|.|.|||+.|.+-+..|. ....+|.+|+... ........+-+ |=++..|+.+|+|+-+ +.+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~ 69 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIP 69 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCC
Confidence 578999999999999998 5467899998864 33444556665 5799999999999999 666654
No 39
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=94.76 E-value=0.15 Score=35.42 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=41.2
Q ss_pred CCeEEeeeeEEeeecCHHHHHhhcCcc--cCCCcceEEecCCCHHHHHHhhhcc
Q 024486 195 GDETFKAHKLILAARSPVFRAQFYGLV--GDRNLDKVVVKDVEPSIFKVMLLFS 246 (267)
Q Consensus 195 ~~~~~~~hk~iL~~~s~~f~~~f~~~~--~e~~~~~i~~~~~~~~~~~~~l~~~ 246 (267)
+|.+|-..|.+ |.-|+-.|+|+.++. .++..+++.+.++....++.+.+|+
T Consensus 25 Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl 77 (112)
T KOG3473|consen 25 DDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYL 77 (112)
T ss_pred CCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHh
Confidence 45566665554 567899999998754 5677789999999999999999987
No 40
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.16 Score=41.58 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=55.3
Q ss_pred EEEEeCCeEEeeeeEEeeecCHHHHHhhcCcc--cCCCcceEEecCCCHHHHHHhhhccccCceecC--hhhHHHH
Q 024486 190 IVFEVGDETFKAHKLILAARSPVFRAQFYGLV--GDRNLDKVVVKDVEPSIFKVMLLFSSYSAFIST--WKRIEKN 261 (267)
Q Consensus 190 v~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~--~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~--~~~v~~~ 261 (267)
+.+.|||..|...+.-|.....+|++|+.... ....+.+|-++ =+|..|..+|.||=.|.+.++ ..++.++
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID-RSpKHF~~ILNfmRdGdv~LPe~~kel~El 81 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID-RSPKHFDTILNFMRDGDVDLPESEKELKEL 81 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec-CChhHHHHHHHhhhcccccCccchHHHHHH
Confidence 55889999999999999999999999998765 33344556654 789999999999998777654 3344443
No 41
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=92.39 E-value=0.11 Score=37.11 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=45.5
Q ss_pred EEEEe-CCeEEeeeeEEeeecCHHHHHhhcCcccCC-CcceEEecCCCHHHHHHhhhccccC
Q 024486 190 IVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDR-NLDKVVVKDVEPSIFKVMLLFSSYS 249 (267)
Q Consensus 190 v~i~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~-~~~~i~~~~~~~~~~~~~l~~~Yt~ 249 (267)
+++.. +|..|.+.+.+. ..|..++.|+.....+. +...|.+++++..+++.+++|++--
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h 64 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHH 64 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHc
Confidence 44444 788999999875 68999999997533222 2258999999999999999999853
No 42
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=92.15 E-value=0.016 Score=50.05 Aligned_cols=74 Identities=22% Similarity=0.178 Sum_probs=53.6
Q ss_pred hHHHHHHhhhcC---CCccEEEEe-CCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccC
Q 024486 174 MGQGLKDLLESE---IGCDIVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYS 249 (267)
Q Consensus 174 ~~~~~~~~~~~~---~~~Dv~i~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~ 249 (267)
...++..++.+. .-.|+++.. .|+.|.|||.+|++||.+|..-+.... ....+|+-..+-+.+|..+|+|+|-.
T Consensus 133 ~aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~ 210 (516)
T KOG0511|consen 133 PAAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLN 210 (516)
T ss_pred cchHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHh
Confidence 345666666554 336888877 567888999999999998866554322 12345666678899999999999987
No 43
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=89.09 E-value=0.73 Score=40.89 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=50.8
Q ss_pred cEEEEeCCeEEeeeeEEeeecC--HHHHHhhcCcccCCC-cceEEecCCCHHHHHHhhhccccCceecC
Q 024486 189 DIVFEVGDETFKAHKLILAARS--PVFRAQFYGLVGDRN-LDKVVVKDVEPSIFKVMLLFSSYSAFIST 254 (267)
Q Consensus 189 Dv~i~~~~~~~~~hk~iL~~~s--~~f~~~f~~~~~e~~-~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~ 254 (267)
-|.|.|||+.|...+.-|+..+ .+|.+++.+.+.-.. ..-..+-|=+|+.|..+|.|+=|+++++.
T Consensus 12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~ 80 (465)
T KOG2714|consen 12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDAS 80 (465)
T ss_pred eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCc
Confidence 3568899999999998887776 688888877554222 12234446799999999999999999884
No 44
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=72.49 E-value=1.3 Score=37.96 Aligned_cols=63 Identities=10% Similarity=0.177 Sum_probs=49.3
Q ss_pred eEEeeeeEEeeecCHHHHHhhcCccc-CCCcceEEec-CCCHHHHHHhhhccccCceecChhhHH
Q 024486 197 ETFKAHKLILAARSPVFRAQFYGLVG-DRNLDKVVVK-DVEPSIFKVMLLFSSYSAFISTWKRIE 259 (267)
Q Consensus 197 ~~~~~hk~iL~~~s~~f~~~f~~~~~-e~~~~~i~~~-~~~~~~~~~~l~~~Yt~~~~~~~~~v~ 259 (267)
+.|.|.+.+|...-.||+..+..... .....+|.|. +-+..+|+=+++|+....-.++++||.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~Nvv 78 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVV 78 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEE
Confidence 57999999999999999999965211 1222345554 678899999999999988888888876
No 45
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=69.50 E-value=13 Score=31.73 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=49.7
Q ss_pred CCccEEEEeCCeEEeeeeEEeeecC-HHHHHhhcCcc---cCCCcceEEe-cCCCHHHHHHhhhccccCcee
Q 024486 186 IGCDIVFEVGDETFKAHKLILAARS-PVFRAQFYGLV---GDRNLDKVVV-KDVEPSIFKVMLLFSSYSAFI 252 (267)
Q Consensus 186 ~~~Dv~i~~~~~~~~~hk~iL~~~s-~~f~~~f~~~~---~e~~~~~i~~-~~~~~~~~~~~l~~~Yt~~~~ 252 (267)
..--++..+++..|-+.+.+|.+.- .-+-.||.+++ ..++..+.++ ++|+..+|+.+|+|.-+|.+.
T Consensus 94 ~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iR 165 (438)
T KOG3840|consen 94 EGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMR 165 (438)
T ss_pred CCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCcee
Confidence 4456788889999999999998764 33455665543 2344456665 599999999999999999874
No 46
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=65.92 E-value=14 Score=26.87 Aligned_cols=69 Identities=12% Similarity=0.022 Sum_probs=39.7
Q ss_pred CCeEEeeeeEEeeecCHHHHHhhcC-cc-cCCCcceEEecCCCHHHHHHhhhccccCcee--cChhhHHHHHhh
Q 024486 195 GDETFKAHKLILAARSPVFRAQFYG-LV-GDRNLDKVVVKDVEPSIFKVMLLFSSYSAFI--STWKRIEKNACV 264 (267)
Q Consensus 195 ~~~~~~~hk~iL~~~s~~f~~~f~~-~~-~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~--~~~~~v~~~~~~ 264 (267)
++..+.+|-.+++++||.+...=.. +- .+.--..+.+ .--.+.....|+++|.+.-. +..+.+.+.++.
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f~IpY~~~~ii~PFDF-NglEe~I~~~l~~mY~~s~~~efk~EDmve~IDI 92 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKFIIPYTHEGIIPPFDF-NGLEEGIKNTLKIMYKDSKIEEFKQEDMVEAIDI 92 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEEEEeccCCCeECCccc-CcHHHHHHHHHHHHhCCCCcccccHHHHHhhhhe
Confidence 4678999999999999977542110 00 0110011122 22456778999999998542 344444444443
No 47
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=50.01 E-value=56 Score=26.79 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=47.1
Q ss_pred cEEEEeCCeEEeeeeEEeeecCH--HHHHhhcCcc--cCCCcceEEecCCCHHHHHHhhhccccCceec
Q 024486 189 DIVFEVGDETFKAHKLILAARSP--VFRAQFYGLV--GDRNLDKVVVKDVEPSIFKVMLLFSSYSAFIS 253 (267)
Q Consensus 189 Dv~i~~~~~~~~~hk~iL~~~s~--~f~~~f~~~~--~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~ 253 (267)
=|.+.++|+.|-.-+.-|..|-| -+.+||.+.- .+....-..+-|=++..|+.+|.|+-.|+++.
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~ 78 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPS 78 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceee
Confidence 45678899999888887777743 6778887622 22222234455688999999999999999974
No 48
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=32.95 E-value=31 Score=26.72 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=37.7
Q ss_pred CCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhcccc
Q 024486 195 GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSY 248 (267)
Q Consensus 195 ~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt 248 (267)
+|+.|.+-..++ ..|..+.+++...-.......|.++.++..+|..+|+|++-
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~ 65 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKK 65 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHH
Confidence 667777666653 46777777775321122115799999999999999999987
No 49
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=21.88 E-value=25 Score=30.55 Aligned_cols=61 Identities=20% Similarity=0.191 Sum_probs=46.5
Q ss_pred cEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccC
Q 024486 189 DIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYS 249 (267)
Q Consensus 189 Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~ 249 (267)
|.++......+++|+.+|+..|+.|..+....-..+...-+.+.++....+..+.+++|..
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~ 88 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS 88 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc
Confidence 3344446678999999999999999988766533344456677788888889999999987
No 50
>PF01407 Gemini_AL3: Geminivirus AL3 protein; InterPro: IPR000657 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. Geminiviruses contain three ORFs (designated AL1, AL2, and AL3) that overlap and are specified by multiple polycistronic mRNAs. The AL3 protein comprises approximately 0.05% of the cellular proteins and is present in the soluble and organelle fractions []. AL3 may form oligomers []. Immunoprecipitation of AL3 in a baculovirus expression system extracts expressing both AL1 and AL3 showed that the two proteins also complex with each other. The AL3 protein is involved in viral replication. ; GO: 0016032 viral reproduction
Probab=21.28 E-value=37 Score=24.77 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=15.9
Q ss_pred CcceeeeeeeeEEEEEEEcc
Q 024486 8 STSKSINETVNGSHQFTVKG 27 (267)
Q Consensus 8 ~~s~~~~~~~~~~~~w~I~n 27 (267)
+.+-|...+..|.++|+|.|
T Consensus 5 GE~ITaaQa~ngvyiWev~N 24 (120)
T PF01407_consen 5 GEPITAAQAENGVYIWEVPN 24 (120)
T ss_pred CchhhHHHhcCceeEEEcCC
Confidence 44556677889999999997
Done!