Query 024486
Match_columns 267
No_of_seqs 198 out of 2018
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:02:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hqi_A Speckle-type POZ protei 100.0 2.8E-48 9.4E-53 334.0 23.4 238 14-261 2-248 (312)
2 3ivv_A Speckle-type POZ protei 100.0 1.5E-29 5E-34 193.4 13.4 134 13-156 5-144 (145)
3 1lb6_A TNF receptor-associated 100.0 1.3E-28 4.4E-33 191.2 10.1 140 16-157 2-158 (160)
4 4ghu_A TNF receptor-associated 100.0 8.2E-29 2.8E-33 198.0 8.4 140 15-156 36-188 (198)
5 4gjh_A TNF receptor-associated 99.9 2.2E-28 7.5E-33 192.9 8.6 138 15-156 20-174 (178)
6 2foj_A Ubiquitin carboxyl-term 99.9 2.6E-27 8.8E-32 182.9 13.7 128 16-156 16-149 (155)
7 2gkw_A TNF receptor-associated 99.9 1.9E-27 6.6E-32 189.6 6.5 136 16-155 37-187 (192)
8 1ca9_A TRAF2, protein (TNF rec 99.9 3.7E-27 1.3E-31 188.2 6.9 135 16-155 40-190 (192)
9 1d00_A Tumor necrosis factor r 99.9 1.2E-26 4.1E-31 181.6 8.3 135 16-155 16-166 (168)
10 1flk_A TNF receptor associated 99.9 9.8E-27 3.3E-31 190.2 6.3 137 16-156 73-224 (228)
11 2f1z_A Ubiquitin carboxyl-term 99.9 8.4E-23 2.9E-27 186.7 12.9 128 16-156 28-161 (522)
12 2if5_A Zinc finger and BTB dom 99.8 2.6E-21 8.9E-26 142.7 5.3 93 170-262 8-100 (120)
13 1r29_A B-cell lymphoma 6 prote 99.8 9.3E-21 3.2E-25 141.2 5.9 93 169-262 11-104 (127)
14 4eoz_A Speckle-type POZ protei 99.8 1.3E-20 4.4E-25 143.5 5.5 97 166-262 4-100 (145)
15 3b84_A Zinc finger and BTB dom 99.8 2.4E-20 8.2E-25 137.3 5.8 88 171-262 8-95 (119)
16 3ohu_A Transcription regulator 99.8 3.9E-20 1.3E-24 137.4 6.9 91 170-262 15-106 (125)
17 2ppi_A Gigaxonin; BTB domain, 99.8 2.5E-20 8.6E-25 141.8 5.7 92 171-262 31-124 (144)
18 3htm_A Speckle-type POZ protei 99.8 7.4E-20 2.5E-24 143.3 7.5 96 166-261 13-108 (172)
19 2ihc_A Transcription regulator 99.8 2.7E-20 9.2E-25 138.0 4.2 92 169-262 11-103 (124)
20 3fkc_A Transcriptional regulat 99.8 9.4E-20 3.2E-24 133.5 6.5 88 170-262 14-102 (116)
21 2vpk_A Myoneurin; transcriptio 99.8 9E-20 3.1E-24 133.6 6.4 87 172-262 7-95 (116)
22 2yy9_A Zinc finger and BTB dom 99.8 5.9E-20 2E-24 138.2 5.2 89 170-262 8-96 (135)
23 2z8h_A Transcription regulator 99.8 6.1E-20 2.1E-24 138.7 5.2 93 168-262 17-110 (138)
24 1buo_A POZ domain, protein (pr 99.8 9.2E-20 3.1E-24 134.6 6.0 88 170-262 11-98 (121)
25 2vkp_A BTB/POZ domain-containi 99.8 8.1E-20 2.8E-24 132.3 5.0 81 181-262 2-86 (109)
26 3ga1_A Nucleus accumbens-assoc 99.8 2.2E-19 7.4E-24 134.1 6.0 88 171-262 17-105 (129)
27 2q81_A MIZ-1 protein; BTB/POZ 99.8 2.6E-20 9E-25 137.1 0.3 87 171-262 11-97 (119)
28 3hve_A Gigaxonin; ubiquitin, c 99.7 1.7E-18 5.8E-23 144.2 4.0 94 169-262 13-108 (256)
29 3m5b_A Zinc finger and BTB dom 99.7 3.7E-18 1.3E-22 125.4 4.7 82 170-262 15-96 (119)
30 3i3n_A Kelch-like protein 11; 99.7 5.7E-18 1.9E-22 142.8 3.0 94 169-262 14-116 (279)
31 4gwm_A Meprin A subunit beta; 99.5 2.2E-14 7.7E-19 130.6 11.2 141 13-160 400-571 (592)
32 4ajy_C Transcription elongatio 99.0 2.6E-10 9E-15 80.1 5.8 76 190-266 4-95 (97)
33 2ast_A S-phase kinase-associat 98.8 5.8E-09 2E-13 80.0 5.2 60 190-250 3-65 (159)
34 1fs1_B SKP1, cyclin A/CDK2-ass 98.0 6.2E-06 2.1E-10 61.6 4.7 56 190-250 4-60 (141)
35 1hv2_A Elongin C, ELC1; protei 98.0 1.5E-05 5.2E-10 55.7 5.9 60 189-250 5-65 (99)
36 2fnj_C Transcription elongatio 97.8 1.7E-05 5.8E-10 55.1 4.2 60 190-250 3-65 (96)
37 2p1m_A SKP1-like protein 1A; F 97.6 7.2E-06 2.5E-10 62.6 -0.9 57 190-250 6-63 (160)
38 1vcb_B Protein (elongin C); tu 97.0 0.00071 2.4E-08 48.2 4.5 61 189-250 18-81 (112)
39 3drz_A BTB/POZ domain-containi 96.7 0.0037 1.3E-07 44.0 5.9 66 189-255 7-77 (107)
40 3v7d_A Suppressor of kinetocho 96.1 0.0079 2.7E-07 46.0 5.2 61 189-250 8-73 (169)
41 3drx_A BTB/POZ domain-containi 90.2 0.15 5.3E-06 39.7 2.6 66 189-255 13-83 (202)
42 3kvt_A Potassium channel prote 87.4 0.1 3.5E-06 37.0 -0.2 66 189-255 6-73 (115)
43 1nn7_A Potassium channel KV4.2 80.2 0.31 1.1E-05 33.9 -0.2 62 190-255 2-67 (105)
44 1s1g_A Potassium voltage-gated 78.6 0.74 2.5E-05 33.0 1.3 64 188-255 13-80 (124)
45 2nz0_B Potassium voltage-gated 76.0 1 3.5E-05 32.9 1.5 66 186-255 33-102 (140)
46 3v0r_A Major allergen ALT A 1; 74.6 0.47 1.6E-05 33.9 -0.6 30 16-47 9-38 (133)
47 1t1d_A Protein (potassium chan 72.3 0.5 1.7E-05 32.5 -0.9 64 190-254 3-69 (100)
48 2r9r_B Paddle chimera voltage 30.1 19 0.00065 32.2 1.6 63 188-254 52-120 (514)
No 1
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=100.00 E-value=2.8e-48 Score=333.95 Aligned_cols=238 Identities=29% Similarity=0.513 Sum_probs=196.2
Q ss_pred eeeeeEEEEEEEcccccccCCCCCCeeeeCceeecce---eEEEEEEcCCCCCCCCCCeEEEEEEEcc-CCceEEEEEEE
Q 024486 14 NETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGY---DWAIYFYPDGKNPEDGALYVSVFIALAS-EGTDVRALFEL 89 (267)
Q Consensus 14 ~~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~F~~gg~---~W~l~~yp~g~~~~~~~~~lsl~l~~~~-~~~~~~~~~~~ 89 (267)
+++.+++|+|+|+|||.++ .+.++++.||+|.+||+ +|+|++||+|++.+ +++|||+||.|.+ .+|++.|+|+|
T Consensus 2 s~~~~~~~~w~I~nfs~~~-~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~-~~~~lslyL~~~~~~~~~v~a~~~~ 79 (312)
T 3hqi_A 2 SKVVKFSYMWTINNFSFCR-EEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEE-SKDYLSLYLLLVSCPKSEVRAKFKF 79 (312)
T ss_dssp EEEEEEEEEEEETTGGGCC-CCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECCC-CEEEEEEE
T ss_pred CceEEEEEEEEEcCcchhh-hcCCCeEeeCCcccCCCCCceEEEEEECCCCCcc-CCCcEEEEEEEcCCCCCcEEEEEEE
Confidence 4678899999999999987 35678999999999985 99999999998743 6789999999987 47999999999
Q ss_pred EEeeCCCCCceeeeeccccccccCceeecccCcccccccccccccc--ccccCcCCCceEEEEEEEEEeeecC---CCCc
Q 024486 90 TLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVRNRLE---GPKQ 164 (267)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l--~~~~~l~dd~l~i~~~i~v~~~~~~---~~~~ 164 (267)
+|+|++++....... ...++|. ++.+|||.+|++|++| +.+||++||+++|+|+|.|.++... ....
T Consensus 80 ~l~~~~~~~~~~~~~-------~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~ 151 (312)
T 3hqi_A 80 SILNAKGEETKAMES-------QRAYRFV-QGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTM 151 (312)
T ss_dssp EEECTTSCEEEEEEC-------SSCEEEC-TTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCC
T ss_pred EEEeCCCCccccccc-------CCceeCC-CCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccc
Confidence 999998765432211 1235665 3569999999999999 4579999999999999999975321 1223
Q ss_pred cCCCCCCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhh
Q 024486 165 YSIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLL 244 (267)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~ 244 (267)
....+|+..+.+++.+++.++.++||+|.++|++|+|||.|||++|+||++||.+++.|.....|.++++++++|+.+|+
T Consensus 152 ~~~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~ 231 (312)
T 3hqi_A 152 NMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC 231 (312)
T ss_dssp SSCCCCCCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHH
T ss_pred cccCCCCchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCceecChhhHHHH
Q 024486 245 FSSYSAFISTWKRIEKN 261 (267)
Q Consensus 245 ~~Yt~~~~~~~~~v~~~ 261 (267)
||||+++++..+++.++
T Consensus 232 ~iYt~~~~~~~~~~~~l 248 (312)
T 3hqi_A 232 FIYTGKAPNLDKMADDL 248 (312)
T ss_dssp HHHHSCCTTHHHHHHHH
T ss_pred hhcCCCCCChHHHHHHH
Confidence 99999999888777643
No 2
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.96 E-value=1.5e-29 Score=193.39 Aligned_cols=134 Identities=28% Similarity=0.593 Sum_probs=112.4
Q ss_pred eeeeeeEEEEEEEcccccccCCCCCCeeeeCceeecce---eEEEEEEcCCCCCCCCCCeEEEEEEEccC-CceEEEEEE
Q 024486 13 INETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGY---DWAIYFYPDGKNPEDGALYVSVFIALASE-GTDVRALFE 88 (267)
Q Consensus 13 ~~~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~F~~gg~---~W~l~~yp~g~~~~~~~~~lsl~l~~~~~-~~~~~~~~~ 88 (267)
.-++..++|+|+|+|||.+++ +.++++.||+|.+||+ +|+|++||+|+..+ +.+||||||+|.+. .|++.|+|+
T Consensus 5 m~~~~~~~~~w~I~~fs~~~~-~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~-~~~~lSlyL~l~~~~~w~v~a~f~ 82 (145)
T 3ivv_A 5 SGKVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEE-SKDYLSLYLLLVSCPKSEVRAKFK 82 (145)
T ss_dssp CCCCCEEEEEEEESSGGGCCC-CTTCCEECCCEEESGGGCEEEEEEEETTCSSGG-GTTEEEEEEEEEECSSSEEEEEEE
T ss_pred CCcEEEEEEEEEEcCchHHhh-cCCCEEECCCcCCCCcCCceEEEEEEcCCCCCC-CCCeEEEEEEEcCCCCCcEEEEEE
Confidence 345788999999999999875 5678999999999995 99999999998743 57899999999875 799999999
Q ss_pred EEEeeCCCCCceeeeeccccccccCceeecccCcccccccccccccc--ccccCcCCCceEEEEEEEEEe
Q 024486 89 LTLVDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVR 156 (267)
Q Consensus 89 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l--~~~~~l~dd~l~i~~~i~v~~ 156 (267)
|+|+||.++....... ...++|. +..+|||.+||++++| ++++||+||+|+|+|+|.|++
T Consensus 83 l~llnq~~~~~~~~~~-------~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~ 144 (145)
T 3ivv_A 83 FSILNAKGEETKAMES-------QRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 144 (145)
T ss_dssp EEEECTTSCEEEEEEC-------SSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC
T ss_pred EEEEecCCCceeeecc-------cceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEe
Confidence 9999998765432111 1235664 4689999999999999 568999999999999999975
No 3
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.95 E-value=1.3e-28 Score=191.22 Aligned_cols=140 Identities=21% Similarity=0.341 Sum_probs=105.7
Q ss_pred eeeEEEEEEEcccccccC-CCCCC--eeeeCceeec--ceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceEE
Q 024486 16 TVNGSHQFTVKGYSLAKG-MGPGK--CLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVR 84 (267)
Q Consensus 16 ~~~~~~~w~I~nfs~~~~-~~~~~--~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~~ 84 (267)
+..|+|+|+|+|||.+++ ++.++ .+.||+|.+| ||+|+|++||+|++.+..++||||||+++++ +|++.
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 467999999999999875 44566 8999999999 9999999999998754347899999999753 39999
Q ss_pred EEEEEEEeeCCCCCce-eeeeccccccccCceeec-----ccCccccccccccccccccccCcCCCceEEEEEEEEEee
Q 024486 85 ALFELTLVDQSGKGKH-KVHSHFDRALESGPYTLK-----YRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVRN 157 (267)
Q Consensus 85 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~i~v~~~ 157 (267)
|+|+|+|+||.+.... .....+.. ......|. .+..+|||..||++++|++++||+||+|+|+|+|.|+.+
T Consensus 82 a~~~l~lldq~~~~~~~~~~~~~~~--~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 82 GTIRLTILDQSEAPVRQNHEEIMDA--KPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEEEC--CTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGTSCCCBTTBEEEEEEEEC---
T ss_pred eeEEEEEEcCCCccccccceEEeec--CCcchhccCCcccCCCCCcCEeeEeEHHHhhhCCCccCCEEEEEEEEEEeec
Confidence 9999999999765321 11111100 00011221 123479999999999999899999999999999999753
No 4
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.95 E-value=8.2e-29 Score=197.95 Aligned_cols=140 Identities=25% Similarity=0.328 Sum_probs=111.8
Q ss_pred eeeeEEEEEEEcccccccC---CCCCCeeeeCceeec--ceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceE
Q 024486 15 ETVNGSHQFTVKGYSLAKG---MGPGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDV 83 (267)
Q Consensus 15 ~~~~~~~~w~I~nfs~~~~---~~~~~~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~ 83 (267)
.+..|.|+|+|+|||.+++ .+.++++.||+|.+| |++|+|++||+|++.+ .++||||||.+.++ +|++
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~-~~~~lSlyL~l~~g~~D~~l~wp~ 114 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG-KGTHLSLFFVIMRGEYDALLPWPF 114 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGG-TTTEEEEEEEEECCTTGGGSCSSC
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCC-CCCeEEEEEEecCCccCCCCCceE
Confidence 4578999999999999886 567789999999999 9999999999998754 57899999999853 5999
Q ss_pred EEEEEEEEeeCCCCCceeeeecccc--ccccCceeecccCccccccccccccccccccCcCCCceEEEEEEEEEe
Q 024486 84 RALFELTLVDQSGKGKHKVHSHFDR--ALESGPYTLKYRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVR 156 (267)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~i~v~~ 156 (267)
.|+|+|+|+||.++..+... .+.. ........+...+.+|||..||++++|+++|||+||+|+|+|+|.|..
T Consensus 115 ~a~~~l~Lldq~~~~~~~~~-~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~ 188 (198)
T 4ghu_A 115 KQKVTLMLMDQGSSRRHLGD-AFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSD 188 (198)
T ss_dssp CCCEEEEECCCSTTCCCEEE-EECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTBEEEEEEECCTT
T ss_pred EEEEEEEEEcCCCCccceEE-EeecCcccceecCCcccCcCCcCchhEeEHHHhhhcCCeeCCEEEEEEEEEecc
Confidence 99999999999875433221 1111 000111223345679999999999999889999999999999999875
No 5
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.95 E-value=2.2e-28 Score=192.91 Aligned_cols=138 Identities=26% Similarity=0.397 Sum_probs=109.5
Q ss_pred eeeeEEEEEEEcccccccC---CCCCCeeeeCceeec--ceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceE
Q 024486 15 ETVNGSHQFTVKGYSLAKG---MGPGKCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDV 83 (267)
Q Consensus 15 ~~~~~~~~w~I~nfs~~~~---~~~~~~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~ 83 (267)
.++.|.|+|+|+|||.+++ .+.+.++.||+|.+| |++|+|++||+|++.+ .++||||||++.++ +|++
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~-~~~~lSlyL~l~~~~~d~~l~W~v 98 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSG-KGTHLSLYFVVMRGEFDSLLQWPF 98 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGG-TTTEEEEEEEEBCCTTGGGSCSSC
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCC-CCCEEEEEEEEecCCCCcccCCce
Confidence 4678999999999999886 455669999999999 9999999999998744 57899999999653 4999
Q ss_pred EEEEEEEEeeCCCCCceeeeeccccccccCceeec----ccCcccccccccccccccc--ccCcCCCceEEEEEEEEEe
Q 024486 84 RALFELTLVDQSGKGKHKVHSHFDRALESGPYTLK----YRGSMWGYKRFFKRTSLET--SDYIKDDCLLINCTVGVVR 156 (267)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~fi~~~~l~~--~~~l~dd~l~i~~~i~v~~ 156 (267)
.|+|+|+|+||.++..+.. ..++.. ...+.|. ..+.+|||.+||++++|++ ++||+||+|+|+|+|.|.+
T Consensus 99 ~a~~~l~Lldq~~~~~~~~-~~~~~~--~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~ 174 (178)
T 4gjh_A 99 RQRVTLMLLDQSGKKNHIV-ETFKAD--PNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTD 174 (178)
T ss_dssp CCEEEEEECCTTSSCCCEE-EEEECC--TTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTT
T ss_pred EEEEEEEEEcCCCCcceeE-EeeccC--CccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecC
Confidence 9999999999987643221 111100 1123443 2356899999999999976 8999999999999997753
No 6
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.95 E-value=2.6e-27 Score=182.94 Aligned_cols=128 Identities=18% Similarity=0.241 Sum_probs=103.2
Q ss_pred eeeEEEEEEEcccccccCCCCCCeeeeCceeecceeEEEEEEcCCCCCCCCCCeEEEEEEEccC----CceEEEEEEEEE
Q 024486 16 TVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALASE----GTDVRALFELTL 91 (267)
Q Consensus 16 ~~~~~~~w~I~nfs~~~~~~~~~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~----~~~~~~~~~~~l 91 (267)
...++|.|+|+|||.++ +.++||+|.+||++|+|++||+|++..++++||||||+|... +|++.|+|+|+|
T Consensus 16 ~~~~~~~w~I~nfS~~~-----~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~~~l~l 90 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS-----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKI 90 (155)
T ss_dssp CSEEEEEEEESSGGGCC-----SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTTCCCSSCEEEEEEEEEE
T ss_pred CCCcEEEEEECChhhcC-----CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCEEEEEEEEEE
Confidence 34799999999999985 689999999999999999999997632257899999999653 499999999999
Q ss_pred eeCCCCCceeeeeccccccccCceeecccCccccccccccccccc--cccCcCCCceEEEEEEEEEe
Q 024486 92 VDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSLE--TSDYIKDDCLLINCTVGVVR 156 (267)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~--~~~~l~dd~l~i~~~i~v~~ 156 (267)
+|+.++....... ..++|.....+|||.+||++++|+ +++||+||+|+|+|+|.|.+
T Consensus 91 ~~~~~~~~~~~~~--------~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~ 149 (155)
T 2foj_A 91 INYRDDEKSFSRR--------ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADA 149 (155)
T ss_dssp CCSSCGGGCEEEE--------EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECC
T ss_pred EcCCCCcceEEec--------cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeC
Confidence 9998764221111 125666557899999999999995 68999999999999999954
No 7
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.94 E-value=1.9e-27 Score=189.60 Aligned_cols=136 Identities=26% Similarity=0.368 Sum_probs=106.4
Q ss_pred eeeEEEEEEEcccccccC-CCCCC--eeeeCceeec--ceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceEE
Q 024486 16 TVNGSHQFTVKGYSLAKG-MGPGK--CLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVR 84 (267)
Q Consensus 16 ~~~~~~~w~I~nfs~~~~-~~~~~--~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~~ 84 (267)
...|+|+|+|+|||.+++ .+.++ .+.||+|.+| ||+|+|++||+|++.+ +++|||+||++.++ +|++.
T Consensus 37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~-~~~~lSlyL~l~~~~~d~~l~wp~~ 115 (192)
T 2gkw_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG-KGTHLSLFFVIMRGEYDALLPWPFK 115 (192)
T ss_dssp CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGG-TTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCC-CCCEEEEEEEEecCCCCccCCCcEE
Confidence 367999999999999874 34455 6999999999 9999999999998744 57899999999753 49999
Q ss_pred EEEEEEEeeCCCCCceeeeeccccccccCceeec----ccCccccccccccccccccccCcCCCceEEEEEEEEE
Q 024486 85 ALFELTLVDQSGKGKHKVHSHFDRALESGPYTLK----YRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVV 155 (267)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~i~v~ 155 (267)
++|+|+|+||.++..+... .+... ...+.|. ..+.+|||..|+++++|+++|||+||+|+|+|+|.|.
T Consensus 116 a~~~l~lldq~~~~~~~~~-~~~~~--~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~~gyl~dD~l~I~~~V~v~ 187 (192)
T 2gkw_A 116 QKVTLMLMDQGSSRRHLGD-AFKPD--PNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTS 187 (192)
T ss_dssp CCEEEEECCCSTTCCCEEE-EECCC--TTCTTSSCCSSSBCCCEEEEEEEEHHHHHHTTSCBTTEEEEEEEECCT
T ss_pred EEEEEEEECCCCCccceEE-EEecC--CCcccccCCCCCCcCCCChHHEeEHHHhCcCCCeeCCEEEEEEEEEcC
Confidence 9999999999876543211 11100 0112232 2346899999999999987899999999999999774
No 8
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.94 E-value=3.7e-27 Score=188.21 Aligned_cols=135 Identities=18% Similarity=0.322 Sum_probs=106.0
Q ss_pred eeeEEEEEEEcccccccC-CCCCC--eeeeCceee--cceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceEE
Q 024486 16 TVNGSHQFTVKGYSLAKG-MGPGK--CLSSDVFTV--GGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVR 84 (267)
Q Consensus 16 ~~~~~~~w~I~nfs~~~~-~~~~~--~~~S~~F~~--gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~~ 84 (267)
...++|+|+|+|||.+++ .+.|+ .++||+|.+ ||++|+|++||+|++.+ .++||||||++.++ +|++.
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~-~~~~lSlyL~l~~~~~~~~~~W~~~ 118 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTG-RGTHLSLFFVVMKGPNDALLRWPFN 118 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGG-TTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCC-CCCEEEEEEEEccCCCCCcCCCceE
Confidence 468999999999999875 33444 799999999 99999999999998744 57899999999763 49999
Q ss_pred EEEEEEEeeCCCCCceeeeeccccccccCceeec----ccCccccccccccccccc-cccCcCCCceEEEEEEEEE
Q 024486 85 ALFELTLVDQSGKGKHKVHSHFDRALESGPYTLK----YRGSMWGYKRFFKRTSLE-TSDYIKDDCLLINCTVGVV 155 (267)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~fi~~~~l~-~~~~l~dd~l~i~~~i~v~ 155 (267)
++|+|+|+|+.++... ...+... .....|. ..+.+|||..||++++|+ ++|||+||+|+|+|+|.|.
T Consensus 119 a~~~l~lldq~~~~~~--~~~~~~~--~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~V~ 190 (192)
T 1ca9_A 119 QKVTLMLLDQNNREHV--IDAFRPD--VTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT 190 (192)
T ss_dssp CCEEEEECCTTSSCCE--EEEECCC--TTSGGGSCCSSSBCCCEEEEEEEETHHHHSSCSSCBTTEEEEEEEECCT
T ss_pred EEEEEEEECCCCCcee--eEeeccC--CchhhhcCCccCCCCCcChhheeEHHHhhhccCCEeCCEEEEEEEEEec
Confidence 9999999999876332 1111100 0111222 235689999999999998 7899999999999999875
No 9
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.93 E-value=1.2e-26 Score=181.57 Aligned_cols=135 Identities=18% Similarity=0.314 Sum_probs=104.5
Q ss_pred eeeEEEEEEEcccccccCC-CCCC--eeeeCcee--ecceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceEE
Q 024486 16 TVNGSHQFTVKGYSLAKGM-GPGK--CLSSDVFT--VGGYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVR 84 (267)
Q Consensus 16 ~~~~~~~w~I~nfs~~~~~-~~~~--~~~S~~F~--~gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~~ 84 (267)
...++|+|+|+|||.+++. ..++ .++||+|. +||++|+|++||+|++.+ +++||||||++.++ +|++.
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~-~~~~lSlyL~l~~~~~~~~~~w~~~ 94 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTG-RGTHLSLFFVVMKGPNDALLRWPFN 94 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGG-TTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCC-CCcEEEEEEEEecCCCCccCCCceE
Confidence 4689999999999998763 3444 49999996 789999999999998744 57899999999762 59999
Q ss_pred EEEEEEEeeCCCCCceeeeeccccccccCceeec----ccCccccccccccccccccc-cCcCCCceEEEEEEEEE
Q 024486 85 ALFELTLVDQSGKGKHKVHSHFDRALESGPYTLK----YRGSMWGYKRFFKRTSLETS-DYIKDDCLLINCTVGVV 155 (267)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~fi~~~~l~~~-~~l~dd~l~i~~~i~v~ 155 (267)
++|+|+|+||.+..... ...... .....|. ..+.+|||..||++++|++. |||+||+|+|+|+|.|.
T Consensus 95 ~~~~l~ll~q~~~~~~~--~~~~~~--~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 95 QKVTLMLLDQNNREHVI--DAFRPD--VTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp CCEEEEECCTTSSCCEE--EEECCC--TTSGGGSCCSSSBCCCEEEEEEEETTTTTSSSSSSBTTEEEEEEEECCT
T ss_pred EEEEEEEECCCCCccce--eccccC--cchhhccCCCcCCCCCcCcceEeEHHHhcccCCceeCCEEEEEEEEEec
Confidence 99999999998754221 111000 0012232 23578999999999999765 99999999999999874
No 10
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.93 E-value=9.8e-27 Score=190.23 Aligned_cols=137 Identities=25% Similarity=0.352 Sum_probs=107.2
Q ss_pred eeeEEEEEEEcccccccC-CCCC--CeeeeCceeec--ceeEEEEEEcCCCCCCCCCCeEEEEEEEccC------CceEE
Q 024486 16 TVNGSHQFTVKGYSLAKG-MGPG--KCLSSDVFTVG--GYDWAIYFYPDGKNPEDGALYVSVFIALASE------GTDVR 84 (267)
Q Consensus 16 ~~~~~~~w~I~nfs~~~~-~~~~--~~~~S~~F~~g--g~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~------~~~~~ 84 (267)
+..|+|+|+|+|||.+++ .+.| ..+.||+|.+| ||+|+|++||+|++.+ .++|||+||++.++ +|++.
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~-~~~~lSlyL~l~~~~~d~~l~Wp~~ 151 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG-KGTHLSLFFVIMRGEYDALLPWPFK 151 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGG-TTTEEEEEECCBCCTTTTSSCSSCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCC-CCCEEEEEEEEecCCccccCCCcEE
Confidence 478999999999998875 3333 48999999999 9999999999998753 57899999998752 49999
Q ss_pred EEEEEEEeeCCCCCceeeeeccccccccCceeec----ccCccccccccccccccccccCcCCCceEEEEEEEEEe
Q 024486 85 ALFELTLVDQSGKGKHKVHSHFDRALESGPYTLK----YRGSMWGYKRFFKRTSLETSDYIKDDCLLINCTVGVVR 156 (267)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~fi~~~~l~~~~~l~dd~l~i~~~i~v~~ 156 (267)
++|+|+|+||.++..+... .+... .....|. ..+.+|||..|+++++|+++|||+||+|+|+|+|.|.+
T Consensus 152 a~~~l~lldq~~~~~~~~~-~~~~~--~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~~gyL~dD~l~I~~~V~v~~ 224 (228)
T 1flk_A 152 QKVTLMLMDQGSSRRHLGD-AFKPD--PNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSD 224 (228)
T ss_dssp CCEEEEECCCSSSCCCEEE-EECCC--TTCTTSSSCSSSBCCCCSEEEEEEHHHHSSSTTCCSSEEEEEEECCCTT
T ss_pred EEEEEEEEcCCCCccceee-eecCC--CccccccCCccCCCCCcCHHHeeEHHHHccCCCccCCEEEEEEEEEccc
Confidence 9999999999876542211 11100 0011232 24568999999999999889999999999999998854
No 11
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.89 E-value=8.4e-23 Score=186.70 Aligned_cols=128 Identities=17% Similarity=0.225 Sum_probs=102.1
Q ss_pred eeeEEEEEEEcccccccCCCCCCeeeeCceeecceeEEEEEEcCCCCCCCCCCeEEEEEEEcc----CCceEEEEEEEEE
Q 024486 16 TVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTVGGYDWAIYFYPDGKNPEDGALYVSVFIALAS----EGTDVRALFELTL 91 (267)
Q Consensus 16 ~~~~~~~w~I~nfs~~~~~~~~~~~~S~~F~~gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~----~~~~~~~~~~~~l 91 (267)
...+.|.|+|+|||.+++ .++|++|.+||++|+|++||+|+..+.+++|||+||.+.+ .+|.+.|+|+|++
T Consensus 28 ~~~~~~~w~I~nfS~~~~-----~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~f~l~l 102 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLSE-----SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKI 102 (522)
T ss_dssp CSEEEEEEEESSCTTCCS-----CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTTCCCSSCBEEEEEEEEE
T ss_pred cCCcEEEEEECChhhcCC-----ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCCCCCCCceEEEEEEEEE
Confidence 348999999999999873 7999999999999999999999764335789999999965 3599999999999
Q ss_pred eeCCCCCceeeeeccccccccCceeecccCcccccccccccccc--ccccCcCCCceEEEEEEEEEe
Q 024486 92 VDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFKRTSL--ETSDYIKDDCLLINCTVGVVR 156 (267)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l--~~~~~l~dd~l~i~~~i~v~~ 156 (267)
+|+.++...... ...++|...+.+|||.+|+++++| +.+|||+||+++|+|+|.|..
T Consensus 103 ~n~~~~~~~~~~--------~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~ 161 (522)
T 2f1z_A 103 INYRDDEKSFSR--------RISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADA 161 (522)
T ss_dssp CCTTCGGGCEEE--------ECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECC
T ss_pred EcCCCCccceec--------cceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccc
Confidence 998765432111 123677666789999999999999 578999999999999999964
No 12
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.83 E-value=2.6e-21 Score=142.74 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=82.1
Q ss_pred CCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccC
Q 024486 170 PPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYS 249 (267)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~ 249 (267)
++..+++.+.+++.++.++||+|.++|++|+|||.||+++|+||++||.+++.|+....|.++++++++|+.+|+|+|||
T Consensus 8 h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~ 87 (120)
T 2if5_A 8 HSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTA 87 (120)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCC
Confidence 34567888999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred ceecChhhHHHHH
Q 024486 250 AFISTWKRIEKNA 262 (267)
Q Consensus 250 ~~~~~~~~v~~~~ 262 (267)
++.++.+++.+++
T Consensus 88 ~~~~~~~~~~~ll 100 (120)
T 2if5_A 88 TLTVSTANVGDIL 100 (120)
T ss_dssp CCCCCGGGHHHHH
T ss_pred CCccCHHHHHHHH
Confidence 9999999888443
No 13
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.82 E-value=9.3e-21 Score=141.16 Aligned_cols=93 Identities=28% Similarity=0.322 Sum_probs=85.8
Q ss_pred CCCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEe-cCCCHHHHHHhhhccc
Q 024486 169 VPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVV-KDVEPSIFKVMLLFSS 247 (267)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~-~~~~~~~~~~~l~~~Y 247 (267)
.++..+++.+.+++.++.++||+|.++|+.|+|||.||+++|+||++||.+++.| ....|.+ +++++++|+.+|+|+|
T Consensus 11 ~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Y 89 (127)
T 1r29_A 11 RHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMY 89 (127)
T ss_dssp THHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHc
Confidence 3456788899999999999999999999999999999999999999999999888 7789999 9999999999999999
Q ss_pred cCceecChhhHHHHH
Q 024486 248 YSAFISTWKRIEKNA 262 (267)
Q Consensus 248 t~~~~~~~~~v~~~~ 262 (267)
||++.++.+++.+++
T Consensus 90 tg~~~~~~~~~~~ll 104 (127)
T 1r29_A 90 TSRLNLREGNIMAVM 104 (127)
T ss_dssp HSCCCCCTTTHHHHH
T ss_pred CCCcCcCHHHHHHHH
Confidence 999999998888544
No 14
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.81 E-value=1.3e-20 Score=143.55 Aligned_cols=97 Identities=33% Similarity=0.424 Sum_probs=89.9
Q ss_pred CCCCCCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhc
Q 024486 166 SIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLF 245 (267)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~ 245 (267)
...+|+..+.+++.++++++.++|++|.++|+.|+|||.||+++|+||++||.+++.|.....|.++++++++|+.+|+|
T Consensus 4 ~v~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~ 83 (145)
T 4eoz_A 4 MVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCF 83 (145)
T ss_dssp -CCCCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHh
Confidence 46778889999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred cccCceecChhhHHHHH
Q 024486 246 SSYSAFISTWKRIEKNA 262 (267)
Q Consensus 246 ~Yt~~~~~~~~~v~~~~ 262 (267)
+|||+++++.+++.+++
T Consensus 84 ~Y~~~~~~~~~~~~~ll 100 (145)
T 4eoz_A 84 IYTGKAPNLDKMADDLL 100 (145)
T ss_dssp HHHSCCTTGGGTHHHHH
T ss_pred hccCccCCcHHHHHHHH
Confidence 99999999888877443
No 15
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.80 E-value=2.4e-20 Score=137.30 Aligned_cols=88 Identities=25% Similarity=0.218 Sum_probs=80.5
Q ss_pred CCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccCc
Q 024486 171 PSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSA 250 (267)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~ 250 (267)
+..+++.+++++.++.++|++|.++|++|+|||.||+++|+||++||.+++ ...|.++++++++|+.+|+|+|||+
T Consensus 8 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~ 83 (119)
T 3b84_A 8 SVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGH 83 (119)
T ss_dssp HHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCC
Confidence 345778899999999999999999999999999999999999999998765 5689999999999999999999999
Q ss_pred eecChhhHHHHH
Q 024486 251 FISTWKRIEKNA 262 (267)
Q Consensus 251 ~~~~~~~v~~~~ 262 (267)
+.++.+|+.+++
T Consensus 84 ~~~~~~~v~~ll 95 (119)
T 3b84_A 84 LALTSGNRDQVL 95 (119)
T ss_dssp CCCCTTTHHHHH
T ss_pred CccCHHHHHHHH
Confidence 999999888544
No 16
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.80 E-value=3.9e-20 Score=137.35 Aligned_cols=91 Identities=24% Similarity=0.339 Sum_probs=83.3
Q ss_pred CCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecC-CCHHHHHHhhhcccc
Q 024486 170 PPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKD-VEPSIFKVMLLFSSY 248 (267)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~-~~~~~~~~~l~~~Yt 248 (267)
+...+++.++++++++.++||+|.++|+.|+|||.||+++|+||++||.+++.+ ...|.+++ +++++|+.+|+|+||
T Consensus 15 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYt 92 (125)
T 3ohu_A 15 HCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYT 92 (125)
T ss_dssp HHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcC
Confidence 345678889999999999999999999999999999999999999999988766 57899998 999999999999999
Q ss_pred CceecChhhHHHHH
Q 024486 249 SAFISTWKRIEKNA 262 (267)
Q Consensus 249 ~~~~~~~~~v~~~~ 262 (267)
|++.++.+++.+++
T Consensus 93 g~~~~~~~~v~~ll 106 (125)
T 3ohu_A 93 AKLLLSRENIREVI 106 (125)
T ss_dssp SEEEECTTTHHHHH
T ss_pred CceEECHHHHHHHH
Confidence 99999999988554
No 17
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.80 E-value=2.5e-20 Score=141.75 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=80.5
Q ss_pred CCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccC--CCcceEEecCCCHHHHHHhhhcccc
Q 024486 171 PSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGD--RNLDKVVVKDVEPSIFKVMLLFSSY 248 (267)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e--~~~~~i~~~~~~~~~~~~~l~~~Yt 248 (267)
+..+++.+++++.++.++||+|.++|+.|+|||.||+++|+||++||.+++.+ .....|.++++++++|+.+|+|+||
T Consensus 31 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYt 110 (144)
T 2ppi_A 31 AARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFS 110 (144)
T ss_dssp HHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhC
Confidence 45678889999999999999999999999999999999999999999987765 5677999999999999999999999
Q ss_pred CceecChhhHHHHH
Q 024486 249 SAFISTWKRIEKNA 262 (267)
Q Consensus 249 ~~~~~~~~~v~~~~ 262 (267)
|++.++.+++.+++
T Consensus 111 g~~~i~~~~v~~ll 124 (144)
T 2ppi_A 111 GQIRLNEDTIQDVV 124 (144)
T ss_dssp SCCCCCTTTHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 99999999888544
No 18
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.80 E-value=7.4e-20 Score=143.29 Aligned_cols=96 Identities=33% Similarity=0.433 Sum_probs=90.2
Q ss_pred CCCCCCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhc
Q 024486 166 SIPVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLF 245 (267)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~ 245 (267)
....|+..+.+++.+++.++.++|++|.++|+.|+|||.||+++|+||++||.+++.|.....|.++++++++|+.+|+|
T Consensus 13 ~~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~ 92 (172)
T 3htm_A 13 MVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCF 92 (172)
T ss_dssp CSCCCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHH
Confidence 46678888999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred cccCceecChhhHHHH
Q 024486 246 SSYSAFISTWKRIEKN 261 (267)
Q Consensus 246 ~Yt~~~~~~~~~v~~~ 261 (267)
+|||++.++.+++.++
T Consensus 93 ~Yt~~~~~~~~~~~~l 108 (172)
T 3htm_A 93 IYTGKAPNLDKMADDL 108 (172)
T ss_dssp HHHSCCTTGGGTHHHH
T ss_pred HhCCCCCCcHHHHHHH
Confidence 9999999988887744
No 19
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.79 E-value=2.7e-20 Score=138.04 Aligned_cols=92 Identities=21% Similarity=0.378 Sum_probs=81.1
Q ss_pred CCCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEe-cCCCHHHHHHhhhccc
Q 024486 169 VPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVV-KDVEPSIFKVMLLFSS 247 (267)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~-~~~~~~~~~~~l~~~Y 247 (267)
.++..+++.+++++.++.++||+|.++|++|+|||.||+++|+||++||.+++.+. ..|.+ +++++++|+.+|+|+|
T Consensus 11 ~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iY 88 (124)
T 2ihc_A 11 VHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAY 88 (124)
T ss_dssp SHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhc
Confidence 34567889999999999999999999999999999999999999999999887654 57888 5999999999999999
Q ss_pred cCceecChhhHHHHH
Q 024486 248 YSAFISTWKRIEKNA 262 (267)
Q Consensus 248 t~~~~~~~~~v~~~~ 262 (267)
||++.++.+|+.+++
T Consensus 89 tg~~~i~~~~v~~ll 103 (124)
T 2ihc_A 89 TAKLILSKENVDEVC 103 (124)
T ss_dssp HSEEEEETTTHHHHH
T ss_pred CCCcccCHHHHHHHH
Confidence 999999999988554
No 20
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.79 E-value=9.4e-20 Score=133.45 Aligned_cols=88 Identities=23% Similarity=0.249 Sum_probs=80.1
Q ss_pred CCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccC
Q 024486 170 PPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYS 249 (267)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~ 249 (267)
+...+++.+++++.++.++|+++.++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.+|+|+|||
T Consensus 14 ~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg 88 (116)
T 3fkc_A 14 YSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSS 88 (116)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCC
Confidence 345678889999999999999999999999999999999999999999864 568999999999999999999999
Q ss_pred ce-ecChhhHHHHH
Q 024486 250 AF-ISTWKRIEKNA 262 (267)
Q Consensus 250 ~~-~~~~~~v~~~~ 262 (267)
++ .++.+++.+++
T Consensus 89 ~~~~~~~~~~~~ll 102 (116)
T 3fkc_A 89 KIVRVRSDLLDELI 102 (116)
T ss_dssp CCCSCCHHHHHHHH
T ss_pred CcCCCCHHHHHHHH
Confidence 99 69999988554
No 21
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.79 E-value=9e-20 Score=133.60 Aligned_cols=87 Identities=22% Similarity=0.285 Sum_probs=79.2
Q ss_pred CchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEec--CCCHHHHHHhhhccccC
Q 024486 172 SDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVK--DVEPSIFKVMLLFSSYS 249 (267)
Q Consensus 172 ~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~--~~~~~~~~~~l~~~Yt~ 249 (267)
..+++++++++.++.++||+|.++|+.|+|||.||+++|+||++||.++ ....|.++ ++++++|+.+|+|+|||
T Consensus 7 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~ 82 (116)
T 2vpk_A 7 EHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTG 82 (116)
T ss_dssp HHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCC
Confidence 4577889999999999999999999999999999999999999999876 35678888 99999999999999999
Q ss_pred ceecChhhHHHHH
Q 024486 250 AFISTWKRIEKNA 262 (267)
Q Consensus 250 ~~~~~~~~v~~~~ 262 (267)
++.++.+++.+++
T Consensus 83 ~~~~~~~~v~~ll 95 (116)
T 2vpk_A 83 TLNLDSWNVKEIH 95 (116)
T ss_dssp CCCCCTTTHHHHH
T ss_pred CcccCHHHHHHHH
Confidence 9999999888544
No 22
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.79 E-value=5.9e-20 Score=138.22 Aligned_cols=89 Identities=25% Similarity=0.208 Sum_probs=78.8
Q ss_pred CCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccC
Q 024486 170 PPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYS 249 (267)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~ 249 (267)
+...+++.++++++++.++||+|.+++++|+|||.||+++|+||++||.+++ ...|.++++++++|+.+|+|||||
T Consensus 8 h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg 83 (135)
T 2yy9_A 8 HSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTG 83 (135)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCC
Confidence 3456788999999999999999999999999999999999999999998765 567999999999999999999999
Q ss_pred ceecChhhHHHHH
Q 024486 250 AFISTWKRIEKNA 262 (267)
Q Consensus 250 ~~~~~~~~v~~~~ 262 (267)
++.++.+++.+++
T Consensus 84 ~~~i~~~~v~~ll 96 (135)
T 2yy9_A 84 HLALTSGNRDQVL 96 (135)
T ss_dssp CCCCCTTTHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9999999988554
No 23
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.79 E-value=6.1e-20 Score=138.68 Aligned_cols=93 Identities=22% Similarity=0.364 Sum_probs=83.5
Q ss_pred CCCCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEec-CCCHHHHHHhhhcc
Q 024486 168 PVPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVK-DVEPSIFKVMLLFS 246 (267)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~-~~~~~~~~~~l~~~ 246 (267)
..++..+++.+.+++.++.++||+|.++|+.|+|||.||+++|+||++||.+++.+. ..|.++ ++++++|+.+|+|+
T Consensus 17 ~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~~~~~~~lL~~~ 94 (138)
T 2z8h_A 17 SVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVTVKGFEPLIQFA 94 (138)
T ss_dssp SSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCCHHHHHHHHHHh
Confidence 345567889999999999999999999999999999999999999999999887653 578885 99999999999999
Q ss_pred ccCceecChhhHHHHH
Q 024486 247 SYSAFISTWKRIEKNA 262 (267)
Q Consensus 247 Yt~~~~~~~~~v~~~~ 262 (267)
|||++.++.+|+.+++
T Consensus 95 Ytg~~~i~~~~v~~ll 110 (138)
T 2z8h_A 95 YTAKLILSKDNVDEVC 110 (138)
T ss_dssp HHSCCCCCTTTHHHHH
T ss_pred cCCCcccCHHHHHHHH
Confidence 9999999999988554
No 24
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.79 E-value=9.2e-20 Score=134.58 Aligned_cols=88 Identities=18% Similarity=0.306 Sum_probs=80.2
Q ss_pred CCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccC
Q 024486 170 PPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYS 249 (267)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~ 249 (267)
++..+.+.+++++.++.++||++.++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.+|+|+|||
T Consensus 11 ~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg 85 (121)
T 1buo_A 11 HPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTA 85 (121)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCC
Confidence 455678889999999999999999999999999999999999999999763 568999999999999999999999
Q ss_pred ceecChhhHHHHH
Q 024486 250 AFISTWKRIEKNA 262 (267)
Q Consensus 250 ~~~~~~~~v~~~~ 262 (267)
+++++.+++.+++
T Consensus 86 ~~~~~~~~~~~ll 98 (121)
T 1buo_A 86 TLQAKAEDLDDLL 98 (121)
T ss_dssp CCCCCGGGHHHHH
T ss_pred CcCCCHHHHHHHH
Confidence 9999999988544
No 25
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.78 E-value=8.1e-20 Score=132.31 Aligned_cols=81 Identities=30% Similarity=0.476 Sum_probs=70.0
Q ss_pred hhhcCCCccEEEEeCC----eEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccCceecChh
Q 024486 181 LLESEIGCDIVFEVGD----ETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTWK 256 (267)
Q Consensus 181 ~~~~~~~~Dv~i~~~~----~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~~ 256 (267)
+++++.++||+|.+++ +.|+|||.||+++|+||++||.+++.|+. ..|.++++++++|+.+|+|+|||+++++.+
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 5678899999999988 89999999999999999999999998888 899999999999999999999999999998
Q ss_pred hHHHHH
Q 024486 257 RIEKNA 262 (267)
Q Consensus 257 ~v~~~~ 262 (267)
++.+++
T Consensus 81 ~~~~ll 86 (109)
T 2vkp_A 81 TVLATL 86 (109)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 888443
No 26
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.77 E-value=2.2e-19 Score=134.08 Aligned_cols=88 Identities=24% Similarity=0.297 Sum_probs=80.7
Q ss_pred CCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEec-CCCHHHHHHhhhccccC
Q 024486 171 PSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVK-DVEPSIFKVMLLFSSYS 249 (267)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~-~~~~~~~~~~l~~~Yt~ 249 (267)
...+++.+++++.++.++|++|.++|+.|+|||.||+++|+||++||.++ ....|.++ ++++++|+.+|+|+|||
T Consensus 17 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 17 GNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp HHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 45678889999999999999999999999999999999999999999875 56789996 99999999999999999
Q ss_pred ceecChhhHHHHH
Q 024486 250 AFISTWKRIEKNA 262 (267)
Q Consensus 250 ~~~~~~~~v~~~~ 262 (267)
++.++.+++.+++
T Consensus 93 ~~~i~~~~~~~ll 105 (129)
T 3ga1_A 93 RLSMNVGDQDLLM 105 (129)
T ss_dssp EEECCTTTHHHHH
T ss_pred ccccCHHHHHHHH
Confidence 9999999988544
No 27
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.77 E-value=2.6e-20 Score=137.10 Aligned_cols=87 Identities=23% Similarity=0.254 Sum_probs=78.8
Q ss_pred CCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccCc
Q 024486 171 PSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSA 250 (267)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~ 250 (267)
...+++.+++++.++.++||+|.++|+.|+|||.||+++|+||++||.+ +...|.++++++++|+.+|+|+|||+
T Consensus 11 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~-----~~~~i~l~~~~~~~f~~ll~~~Ytg~ 85 (119)
T 2q81_A 11 SQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD-----QKDVVHLDISNAAGLGQVLEFMYTAK 85 (119)
T ss_dssp HHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH-----CCSGGGGGGCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC-----CCCEEEeCCCCHHHHHHHHHHHcCCC
Confidence 4567888999999999999999999999999999999999999999975 24568889999999999999999999
Q ss_pred eecChhhHHHHH
Q 024486 251 FISTWKRIEKNA 262 (267)
Q Consensus 251 ~~~~~~~v~~~~ 262 (267)
+.++.+|+.+++
T Consensus 86 ~~i~~~~~~~ll 97 (119)
T 2q81_A 86 LSLSPENVDDVL 97 (119)
T ss_dssp CCCCTTTHHHHH
T ss_pred CccCHHHHHHHH
Confidence 999999988554
No 28
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.72 E-value=1.7e-18 Score=144.19 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=76.1
Q ss_pred CCCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCccc--CCCcceEEecCCCHHHHHHhhhcc
Q 024486 169 VPPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVG--DRNLDKVVVKDVEPSIFKVMLLFS 246 (267)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~--e~~~~~i~~~~~~~~~~~~~l~~~ 246 (267)
.++..+++.+++++.++.++||+|.++|+.|+|||.||+++|+||++||.+++. +.....|.++++++++|+.+|+|+
T Consensus 13 ~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~ 92 (256)
T 3hve_A 13 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYI 92 (256)
T ss_dssp TTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhc
Confidence 345668889999999999999999999999999999999999999999998876 667789999999999999999999
Q ss_pred ccCceecChhhHHHHH
Q 024486 247 SYSAFISTWKRIEKNA 262 (267)
Q Consensus 247 Yt~~~~~~~~~v~~~~ 262 (267)
|||++.++.+++.+++
T Consensus 93 Yt~~~~i~~~~v~~ll 108 (256)
T 3hve_A 93 FSGQIRLNEDTIQDVV 108 (256)
T ss_dssp HHSCCCCC-CCHHHHH
T ss_pred cCCCCcccHhHHHHHH
Confidence 9999999999988544
No 29
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.71 E-value=3.7e-18 Score=125.38 Aligned_cols=82 Identities=21% Similarity=0.195 Sum_probs=71.7
Q ss_pred CCCchHHHHHHhhhcCCCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccC
Q 024486 170 PPSDMGQGLKDLLESEIGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYS 249 (267)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~ 249 (267)
....+++.++ +.++.++||+|.++|+.|+|||.|||++|+||++ ....|.++++++++|+.+|+|+|||
T Consensus 15 ~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg 83 (119)
T 3m5b_A 15 GSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGE 83 (119)
T ss_dssp TTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTC
T ss_pred chHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCC
Confidence 3456666665 4678999999999999999999999999999984 3467999999999999999999999
Q ss_pred ceecChhhHHHHH
Q 024486 250 AFISTWKRIEKNA 262 (267)
Q Consensus 250 ~~~~~~~~v~~~~ 262 (267)
++.++.+|+++++
T Consensus 84 ~~~i~~~~v~~ll 96 (119)
T 3m5b_A 84 SVELQPGELRPLQ 96 (119)
T ss_dssp CEEECGGGHHHHH
T ss_pred CcCcCHHHHHHHH
Confidence 9999999998554
No 30
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.69 E-value=5.7e-18 Score=142.78 Aligned_cols=94 Identities=17% Similarity=0.282 Sum_probs=78.9
Q ss_pred CCCCchHHHHHHhhhcCCCccEEEEeC---CeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEec------CCCHHHH
Q 024486 169 VPPSDMGQGLKDLLESEIGCDIVFEVG---DETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVK------DVEPSIF 239 (267)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~Dv~i~~~---~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~------~~~~~~~ 239 (267)
.++..+++.+++++.++.++||+|.++ |+.|+|||.||+++|+||++||.+++.|+....|.++ ++++++|
T Consensus 14 ~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f 93 (279)
T 3i3n_A 14 SHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTV 93 (279)
T ss_dssp THHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHH
Confidence 345678899999999999999999998 9999999999999999999999999999999999998 9999999
Q ss_pred HHhhhccccCceecChhhHHHHH
Q 024486 240 KVMLLFSSYSAFISTWKRIEKNA 262 (267)
Q Consensus 240 ~~~l~~~Yt~~~~~~~~~v~~~~ 262 (267)
+.+|+|+|||++.++.+++.+++
T Consensus 94 ~~ll~~~Ytg~~~i~~~~v~~ll 116 (279)
T 3i3n_A 94 EAVIEYMYTGRIRVSTGSVHEVL 116 (279)
T ss_dssp HHHHHHHHHSEEEEETTTHHHHH
T ss_pred HHHHHhhCcCCcccCHHHHHHHH
Confidence 99999999999999998888544
No 31
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.54 E-value=2.2e-14 Score=130.63 Aligned_cols=141 Identities=23% Similarity=0.339 Sum_probs=106.7
Q ss_pred eeeeeeEEEEEEEcccccccCCCCCCeeeeCceee-cceeEEEEEEcCCCCCCCCCCeEEEEEEEccCC------ceE-E
Q 024486 13 INETVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTV-GGYDWAIYFYPDGKNPEDGALYVSVFIALASEG------TDV-R 84 (267)
Q Consensus 13 ~~~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~F~~-gg~~W~l~~yp~g~~~~~~~~~lsl~l~~~~~~------~~~-~ 84 (267)
..+..+..++|+|+||+++... .+..++||+|+. .||+++|.+||++ ..++|||+++++++ ||+ .
T Consensus 400 ~t~G~CP~~vw~i~nfs~~l~~-~~~~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~ 472 (592)
T 4gwm_A 400 LSETRCPHHIWHIRNFTQFIGS-PNGTLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPW 472 (592)
T ss_dssp EESSCCCSEEEEECSCGGGTTC-TTCEEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCS
T ss_pred EeeCCCCCCceeecCHHHhhcC-CCCceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCC
Confidence 3455677899999999988763 456899999986 5999999999974 56899999999853 999 5
Q ss_pred EEEEEEEeeCCCCCceeeeecccccc----c--cCce------------ee-----cccCccccccccccccccccccCc
Q 024486 85 ALFELTLVDQSGKGKHKVHSHFDRAL----E--SGPY------------TL-----KYRGSMWGYKRFFKRTSLETSDYI 141 (267)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~~~~~----~--~~~~------------~~-----~~~~~~~G~~~fi~~~~l~~~~~l 141 (267)
-+++++|+||+++...+++.+....- . .... .| ..++.+|||+.|++++.|++..||
T Consensus 473 ~q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~r~fi 552 (592)
T 4gwm_A 473 QQATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKSRDFI 552 (592)
T ss_dssp EEEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTSTTSS
T ss_pred CEEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhhcCcc
Confidence 78999999998776655544221110 0 0000 01 124568999999999999888999
Q ss_pred CCCceEEEEEEEEEeeecC
Q 024486 142 KDDCLLINCTVGVVRNRLE 160 (267)
Q Consensus 142 ~dd~l~i~~~i~v~~~~~~ 160 (267)
+||++.|.++++=+.....
T Consensus 553 K~d~~~i~~~~eD~~~l~~ 571 (592)
T 4gwm_A 553 KGDDVYILLTVEDISHLNS 571 (592)
T ss_dssp BTTBEEEEEEEEECGGGSS
T ss_pred cCCeEEEEEEEEeCccccc
Confidence 9999999999987775433
No 32
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.04 E-value=2.6e-10 Score=80.06 Aligned_cols=76 Identities=9% Similarity=0.157 Sum_probs=59.3
Q ss_pred EEEEe-CCeEEeeeeEEeeecCHHHHHhhcC--cccCCCcceEEecCCCHHHHHHhhhccc-----c---Ccee---cCh
Q 024486 190 IVFEV-GDETFKAHKLILAARSPVFRAQFYG--LVGDRNLDKVVVKDVEPSIFKVMLLFSS-----Y---SAFI---STW 255 (267)
Q Consensus 190 v~i~~-~~~~~~~hk~iL~~~s~~f~~~f~~--~~~e~~~~~i~~~~~~~~~~~~~l~~~Y-----t---~~~~---~~~ 255 (267)
|++.. +|+.|.+||.+ |++|++|++||.. .+.|+....|.++++++.+++.+++|+| + ++++ ++.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 45555 78999999999 9999999999986 6677778899999999999999999999 5 6777 889
Q ss_pred hhHHHH--Hhhhc
Q 024486 256 KRIEKN--ACVYM 266 (267)
Q Consensus 256 ~~v~~~--~~~~~ 266 (267)
+++.+| |..||
T Consensus 83 ~~l~eLl~AAnyL 95 (97)
T 4ajy_C 83 EIALELLMAANFL 95 (97)
T ss_dssp GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 999965 44454
No 33
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=98.78 E-value=5.8e-09 Score=79.99 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=50.4
Q ss_pred EEEEe-CCeEEeeeeEEeeecCHHHHHhhcC-ccc-CCCcceEEecCCCHHHHHHhhhccccCc
Q 024486 190 IVFEV-GDETFKAHKLILAARSPVFRAQFYG-LVG-DRNLDKVVVKDVEPSIFKVMLLFSSYSA 250 (267)
Q Consensus 190 v~i~~-~~~~~~~hk~iL~~~s~~f~~~f~~-~~~-e~~~~~i~~~~~~~~~~~~~l~~~Yt~~ 250 (267)
|+|.. +|+.|.+|+.+ |++|++|++||.. ++. |.....|.+++++..+++.+++|+|+..
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~ 65 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHK 65 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcC
Confidence 66765 79999999999 8999999999987 666 6666789999999999999999999988
No 34
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=97.99 E-value=6.2e-06 Score=61.62 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=48.7
Q ss_pred EEEEe-CCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccCc
Q 024486 190 IVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSA 250 (267)
Q Consensus 190 v~i~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~ 250 (267)
++|.. +|+.|.+|+.+ |.+|+++++|+...- ...|.+++++..+++.+++|+|...
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~~V~~~iL~kVieyc~~h~ 60 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLPNVNAAILKKVIQWCTHHK 60 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECTTCCHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecCCcCHHHHHHHHHHHHHhc
Confidence 66766 78999999998 899999999997521 4579999999999999999999866
No 35
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=97.95 E-value=1.5e-05 Score=55.66 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=51.5
Q ss_pred cEEEEe-CCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccCc
Q 024486 189 DIVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSA 250 (267)
Q Consensus 189 Dv~i~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~ 250 (267)
-+++.. +|+.|.+++.+ |..|..++.|+..++ +.....|.+++++..+++.+++|+|.-.
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~ 65 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNL 65 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhc
Confidence 356666 89999999997 899999999998755 5555789999999999999999999744
No 36
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=97.82 E-value=1.7e-05 Score=55.09 Aligned_cols=60 Identities=12% Similarity=0.277 Sum_probs=46.9
Q ss_pred EEEEe-CCeEEeeeeEEeeecCHHHHHhhcC--cccCCCcceEEecCCCHHHHHHhhhccccCc
Q 024486 190 IVFEV-GDETFKAHKLILAARSPVFRAQFYG--LVGDRNLDKVVVKDVEPSIFKVMLLFSSYSA 250 (267)
Q Consensus 190 v~i~~-~~~~~~~hk~iL~~~s~~f~~~f~~--~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~ 250 (267)
+++.. +|+.|.+++.+ |..|..++.|+.. .+.|+....|.+++++..+++.+++|+|.-.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~ 65 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKV 65 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHcc
Confidence 45555 88999999997 8899999999975 2346556789999999999999999998744
No 37
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=97.56 E-value=7.2e-06 Score=62.65 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=28.0
Q ss_pred EEEEe-CCeEEeeeeEEeeecCHHHHHhhcCcccCCCcceEEecCCCHHHHHHhhhccccCc
Q 024486 190 IVFEV-GDETFKAHKLILAARSPVFRAQFYGLVGDRNLDKVVVKDVEPSIFKVMLLFSSYSA 250 (267)
Q Consensus 190 v~i~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~ 250 (267)
|+|.. +|+.|.+|+.+ |.+|++|+.||.... ....|.+++++..+++.+++|+|...
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL~kVieyc~~h~ 63 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKILAKVIEYCKRHV 63 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC-----
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHHHHHHHHHHHcc
Confidence 55554 78999999998 899999999997642 23479999999999999999999976
No 38
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.02 E-value=0.00071 Score=48.16 Aligned_cols=61 Identities=11% Similarity=0.259 Sum_probs=46.4
Q ss_pred cEEEEe-CCeEEeeeeEEeeecCHHHHHhhcC--cccCCCcceEEecCCCHHHHHHhhhccccCc
Q 024486 189 DIVFEV-GDETFKAHKLILAARSPVFRAQFYG--LVGDRNLDKVVVKDVEPSIFKVMLLFSSYSA 250 (267)
Q Consensus 189 Dv~i~~-~~~~~~~hk~iL~~~s~~f~~~f~~--~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~ 250 (267)
-++|.. +|..|.+.+. .|..|..++.|+.. .+.+.....|.+++++..+++.+++|++.-.
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~ 81 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKV 81 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhh
Confidence 456664 8899999999 47899999999975 2345555689999999999999999997643
No 39
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=96.67 E-value=0.0037 Score=44.00 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=51.8
Q ss_pred cEEEEeCCeEEeeeeEEeeecC-HHHHHhhcCcc--c--CCCcceEEecCCCHHHHHHhhhccccCceecCh
Q 024486 189 DIVFEVGDETFKAHKLILAARS-PVFRAQFYGLV--G--DRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTW 255 (267)
Q Consensus 189 Dv~i~~~~~~~~~hk~iL~~~s-~~f~~~f~~~~--~--e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 255 (267)
-|.|.|||+.|...+..|+... .+|.+||.+.. . .....++-+ |-++..|+.+|+|+.+|.+.++.
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~ 77 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINK 77 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCT
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCC
Confidence 4678999999999999998875 57889987532 1 223345655 68999999999999999987643
No 40
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=96.10 E-value=0.0079 Score=46.02 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=46.8
Q ss_pred cEEEEe-CCeEEeeeeEEeeecCHHHHHhhcCccc----CCCcceEEecCCCHHHHHHhhhccccCc
Q 024486 189 DIVFEV-GDETFKAHKLILAARSPVFRAQFYGLVG----DRNLDKVVVKDVEPSIFKVMLLFSSYSA 250 (267)
Q Consensus 189 Dv~i~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~----e~~~~~i~~~~~~~~~~~~~l~~~Yt~~ 250 (267)
-|+|.. +|+.|.+++.+ |..|..++.|+..... +.....|.+++++..+++.+++|++.-.
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~ 73 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHR 73 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcc
Confidence 456655 78999999998 7889999999975322 1334689999999999999999998743
No 41
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=90.24 E-value=0.15 Score=39.75 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=49.9
Q ss_pred cEEEEeCCeEEeeeeEEeeecC-HHHHHhhcCc--cc--CCCcceEEecCCCHHHHHHhhhccccCceecCh
Q 024486 189 DIVFEVGDETFKAHKLILAARS-PVFRAQFYGL--VG--DRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTW 255 (267)
Q Consensus 189 Dv~i~~~~~~~~~hk~iL~~~s-~~f~~~f~~~--~~--e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 255 (267)
-|.|.|||..|...+..|.... .+|.+||.+. +. ......+-+ |-++..|+.+|+|+-+|.+.+..
T Consensus 13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~ 83 (202)
T 3drx_A 13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINK 83 (202)
T ss_dssp EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCT
T ss_pred EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCC
Confidence 4668899999999999998765 4788888653 11 123345555 57999999999999999987643
No 42
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=87.37 E-value=0.1 Score=37.04 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=47.5
Q ss_pred cEEEEeCCeEEeeeeEEeeecCH-HHHHhhcCcc-cCCCcceEEecCCCHHHHHHhhhccccCceecCh
Q 024486 189 DIVFEVGDETFKAHKLILAARSP-VFRAQFYGLV-GDRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTW 255 (267)
Q Consensus 189 Dv~i~~~~~~~~~hk~iL~~~s~-~f~~~f~~~~-~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 255 (267)
-|.|.|||+.|...+..|..... .+.+|+.+.. .......+-+ |=++..|+.+|.|+-+|++.++.
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~ 73 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPT 73 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCS
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCC
Confidence 47789999999999999986643 3445554321 1233455655 57999999999999999986643
No 43
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=80.24 E-value=0.31 Score=33.87 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=43.3
Q ss_pred EEEEeCCeEEeeeeEEeeecCHHHHHhhcCc----ccCCCcceEEecCCCHHHHHHhhhccccCceecCh
Q 024486 190 IVFEVGDETFKAHKLILAARSPVFRAQFYGL----VGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTW 255 (267)
Q Consensus 190 v~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~----~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 255 (267)
|.|.|||+.|...+..|..... .|+... ........+-+ |=++..|+.+|+|+-+|.+.++.
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~ 67 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPR 67 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCT
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCC
Confidence 6789999999999988875532 233321 11123345555 45999999999999999987643
No 44
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=78.55 E-value=0.74 Score=32.98 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=45.2
Q ss_pred ccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCc----ccCCCcceEEecCCCHHHHHHhhhccccCceecCh
Q 024486 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYGL----VGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTW 255 (267)
Q Consensus 188 ~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~----~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 255 (267)
.-|.|.|||+.|...+..|..... .++... ........+-+ |=++..|+.+|+|+-+|.+.+..
T Consensus 13 ~~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~ 80 (124)
T 1s1g_A 13 ELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPR 80 (124)
T ss_dssp CEEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCT
T ss_pred CEEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCC
Confidence 457789999999999999875432 233221 11223345655 46999999999999999987643
No 45
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=76.01 E-value=1 Score=32.95 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=46.0
Q ss_pred CCccEEEEeCCeEEeeeeEEeeecCHHHHHhhcCc----ccCCCcceEEecCCCHHHHHHhhhccccCceecCh
Q 024486 186 IGCDIVFEVGDETFKAHKLILAARSPVFRAQFYGL----VGDRNLDKVVVKDVEPSIFKVMLLFSSYSAFISTW 255 (267)
Q Consensus 186 ~~~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~~----~~e~~~~~i~~~~~~~~~~~~~l~~~Yt~~~~~~~ 255 (267)
...-|.|.|||+.|...+..|..... .|+... ........+-+ |=++..|+.+|+|+-+|.+.+..
T Consensus 33 ~~~~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~ 102 (140)
T 2nz0_B 33 QDELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPR 102 (140)
T ss_dssp CCCEEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCT
T ss_pred CCCEEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCC
Confidence 33467789999999999999875432 333321 11123345555 46999999999999999987643
No 46
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=74.62 E-value=0.47 Score=33.86 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=23.1
Q ss_pred eeeEEEEEEEcccccccCCCCCCeeeeCceee
Q 024486 16 TVNGSHQFTVKGYSLAKGMGPGKCLSSDVFTV 47 (267)
Q Consensus 16 ~~~~~~~w~I~nfs~~~~~~~~~~~~S~~F~~ 47 (267)
+++|.++|+|.+|+..|. .+.++.|=.|.+
T Consensus 9 ~~~gd~vwkIs~F~~RKp--eGty~nsvsFnI 38 (133)
T 3v0r_A 9 TTEGDYVWKISEFYGRKP--EGTYYNSLGFNI 38 (133)
T ss_dssp CCCCTTEEEEEEEEEEET--TSSSCSEEEEEE
T ss_pred ccCCceEEEeeeeeeEcC--CCCceeeEEEEE
Confidence 567999999999998873 566777766654
No 47
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=72.34 E-value=0.5 Score=32.49 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=43.6
Q ss_pred EEEEeCCeEEeeeeEEeeecCH-HHHHhhcC-cccCCCcceEEecCCCHHHHHHhhhcccc-CceecC
Q 024486 190 IVFEVGDETFKAHKLILAARSP-VFRAQFYG-LVGDRNLDKVVVKDVEPSIFKVMLLFSSY-SAFIST 254 (267)
Q Consensus 190 v~i~~~~~~~~~hk~iL~~~s~-~f~~~f~~-~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt-~~~~~~ 254 (267)
|+|.|||+.|...+..|+.... .+.+|+.. ........++-+ |=++..|+.+|.|+-+ |++.++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p 69 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRP 69 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCC
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCC
Confidence 6789999999999999865432 22223321 111223455665 5799999999999998 888654
No 48
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=30.14 E-value=19 Score=32.22 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=44.0
Q ss_pred ccEEEEeCCeEEeeeeEEeeecCHHHHHhhcC-----cccCCCcceEEecCCCHHHHHHhhhcccc-CceecC
Q 024486 188 CDIVFEVGDETFKAHKLILAARSPVFRAQFYG-----LVGDRNLDKVVVKDVEPSIFKVMLLFSSY-SAFIST 254 (267)
Q Consensus 188 ~Dv~i~~~~~~~~~hk~iL~~~s~~f~~~f~~-----~~~e~~~~~i~~~~~~~~~~~~~l~~~Yt-~~~~~~ 254 (267)
.-|.|.|||+.|...+..|..... .++.. ........++-+ |=++..|+.+|.|+.+ |++..+
T Consensus 52 ~~v~lNVgG~~f~t~~~tL~~~p~---s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p 120 (514)
T 2r9r_B 52 ERVVINISGLRFETQLKTLAQFPE---TLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRP 120 (514)
T ss_dssp CEEEEEETTEEEEEEHHHHTTSTT---STTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCC
T ss_pred CEEEEEeCCEEEEecHHHHhcCCC---CcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccC
Confidence 357789999999999998865432 22221 111233455655 6799999999999999 988654
Done!