Query 024487
Match_columns 267
No_of_seqs 128 out of 1522
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:58:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08588 succinyl-diaminopimel 100.0 5.3E-30 1.2E-34 231.5 25.4 227 2-260 113-345 (377)
2 PRK13013 succinyl-diaminopimel 100.0 2.9E-29 6.3E-34 230.2 26.2 238 2-260 136-391 (427)
3 PRK06915 acetylornithine deace 100.0 1.3E-28 2.9E-33 225.6 24.1 235 2-260 147-387 (422)
4 PRK13009 succinyl-diaminopimel 100.0 4.2E-28 9E-33 218.9 24.6 223 2-260 112-344 (375)
5 TIGR01910 DapE-ArgE acetylorni 100.0 1.8E-28 3.9E-33 221.4 22.0 229 2-259 118-352 (375)
6 PRK08651 succinyl-diaminopimel 100.0 9.6E-28 2.1E-32 218.0 24.4 227 2-260 127-360 (394)
7 TIGR01246 dapE_proteo succinyl 100.0 1.2E-27 2.6E-32 215.6 24.4 223 2-260 109-341 (370)
8 PRK13983 diaminopimelate amino 100.0 7E-27 1.5E-31 212.5 24.7 226 2-256 130-364 (400)
9 PRK06837 acetylornithine deace 100.0 4.4E-27 9.4E-32 215.9 23.1 234 2-260 151-392 (427)
10 PRK08652 acetylornithine deace 100.0 6.7E-27 1.5E-31 208.8 22.8 204 11-260 107-314 (347)
11 TIGR01892 AcOrn-deacetyl acety 100.0 9E-27 2E-31 209.3 23.7 223 2-260 111-337 (364)
12 TIGR01900 dapE-gram_pos succin 100.0 3.6E-26 7.7E-31 206.3 25.3 231 8-260 124-361 (373)
13 TIGR01891 amidohydrolases amid 100.0 1.5E-26 3.2E-31 208.1 22.1 222 3-261 104-339 (363)
14 PRK07522 acetylornithine deace 100.0 1.5E-26 3.2E-31 209.6 22.2 232 2-260 117-353 (385)
15 PRK00466 acetyl-lysine deacety 99.9 3.7E-26 8.1E-31 204.2 23.0 196 13-260 112-312 (346)
16 COG1473 AbgB Metal-dependent a 99.9 4.8E-26 1E-30 203.9 22.2 224 2-261 116-353 (392)
17 TIGR03526 selenium_YgeY putati 99.9 6.5E-26 1.4E-30 206.1 22.4 225 2-260 121-363 (395)
18 PRK07338 hypothetical protein; 99.9 9.8E-26 2.1E-30 205.4 22.2 213 2-255 142-359 (402)
19 PRK05111 acetylornithine deace 99.9 2.9E-25 6.3E-30 201.0 24.4 220 2-258 124-345 (383)
20 PRK08201 hypothetical protein; 99.9 2E-25 4.4E-30 206.5 23.7 234 2-260 133-422 (456)
21 PRK06133 glutamate carboxypept 99.9 1.7E-25 3.6E-30 204.3 22.8 214 2-257 149-369 (410)
22 TIGR03320 ygeY M20/DapE family 99.9 2.2E-25 4.8E-30 202.6 23.1 225 2-260 121-363 (395)
23 PRK08596 acetylornithine deace 99.9 1.9E-25 4.2E-30 204.6 22.6 234 2-260 131-385 (421)
24 PRK13004 peptidase; Reviewed 99.9 1.6E-25 3.4E-30 203.9 21.8 236 2-260 123-365 (399)
25 PRK06446 hypothetical protein; 99.9 1.8E-25 4E-30 205.6 22.0 223 3-255 117-392 (436)
26 PRK04443 acetyl-lysine deacety 99.9 2.6E-25 5.5E-30 199.0 22.2 207 8-260 107-318 (348)
27 PRK08737 acetylornithine deace 99.9 7.1E-25 1.5E-29 197.1 23.9 213 11-260 117-334 (364)
28 TIGR01880 Ac-peptdase-euk N-ac 99.9 1.9E-25 4E-30 203.4 20.0 228 2-260 125-365 (400)
29 PLN02280 IAA-amino acid hydrol 99.9 7.9E-25 1.7E-29 202.4 23.9 220 2-259 199-435 (478)
30 PRK13007 succinyl-diaminopimel 99.9 1.1E-24 2.3E-29 195.1 23.6 210 10-260 112-324 (352)
31 PRK09104 hypothetical protein; 99.9 1.2E-24 2.7E-29 201.6 23.7 233 2-259 141-429 (464)
32 PRK07907 hypothetical protein; 99.9 1.6E-24 3.4E-29 200.1 23.7 230 8-261 140-416 (449)
33 PRK12892 allantoate amidohydro 99.9 9.7E-25 2.1E-29 199.4 21.9 221 2-260 106-379 (412)
34 TIGR01883 PepT-like peptidase 99.9 8.2E-25 1.8E-29 196.5 20.1 214 2-259 113-330 (361)
35 PLN02693 IAA-amino acid hydrol 99.9 7.6E-24 1.6E-28 194.4 24.2 211 2-250 149-372 (437)
36 PRK07906 hypothetical protein; 99.9 2.3E-24 4.9E-29 197.9 20.7 226 2-260 118-389 (426)
37 PRK09290 allantoate amidohydro 99.9 4E-24 8.6E-29 195.5 22.0 214 2-250 105-366 (413)
38 TIGR01879 hydantase amidase, h 99.9 3.8E-24 8.3E-29 194.9 21.7 223 1-261 98-372 (401)
39 PRK09133 hypothetical protein; 99.9 3E-24 6.5E-29 199.5 20.3 221 2-255 154-426 (472)
40 PRK12893 allantoate amidohydro 99.9 4.7E-24 1E-28 195.0 21.0 221 2-260 108-378 (412)
41 PRK12891 allantoate amidohydro 99.9 1.1E-23 2.3E-28 192.7 21.4 221 1-261 107-379 (414)
42 PRK07473 carboxypeptidase; Pro 99.9 1.6E-23 3.5E-28 189.1 22.1 207 2-254 125-336 (376)
43 TIGR01902 dapE-lys-deAc N-acet 99.9 1.1E-23 2.5E-28 187.5 20.3 200 11-261 100-304 (336)
44 COG0624 ArgE Acetylornithine d 99.9 2.3E-23 5E-28 190.2 22.0 231 2-261 129-377 (409)
45 PRK08262 hypothetical protein; 99.9 1.1E-23 2.4E-28 196.4 19.7 222 2-252 167-437 (486)
46 PRK07079 hypothetical protein; 99.9 3.2E-23 6.9E-28 192.4 22.3 227 2-257 140-417 (469)
47 TIGR01886 dipeptidase dipeptid 99.9 5.1E-23 1.1E-27 190.7 23.0 220 1-260 129-434 (466)
48 PRK12890 allantoate amidohydro 99.9 3.8E-23 8.2E-28 189.1 21.8 224 2-260 106-380 (414)
49 KOG2275 Aminoacylase ACY1 and 99.9 1.1E-22 2.4E-27 178.1 17.9 225 2-255 142-377 (420)
50 TIGR03176 AllC allantoate amid 99.9 3E-22 6.5E-27 182.5 20.6 226 1-260 100-372 (406)
51 PRK07318 dipeptidase PepV; Rev 99.9 1.5E-22 3.3E-27 187.7 18.8 224 1-260 130-431 (466)
52 PRK13381 peptidase T; Provisio 99.9 8.8E-22 1.9E-26 179.5 21.3 212 2-258 151-368 (404)
53 PRK05469 peptidase T; Provisio 99.9 4.4E-21 9.5E-26 175.2 19.6 212 2-257 153-369 (408)
54 PRK06156 hypothetical protein; 99.9 1.7E-20 3.7E-25 176.0 21.6 227 2-260 167-481 (520)
55 TIGR01887 dipeptidaselike dipe 99.9 1.7E-20 3.7E-25 172.8 20.3 221 2-259 119-416 (447)
56 PRK07205 hypothetical protein; 99.9 2.8E-20 6.1E-25 171.6 21.5 219 2-257 129-405 (444)
57 TIGR01882 peptidase-T peptidas 99.9 5.5E-21 1.2E-25 174.6 16.1 214 2-260 155-377 (410)
58 PRK13799 unknown domain/N-carb 99.9 6.9E-20 1.5E-24 173.9 23.2 223 1-260 282-557 (591)
59 TIGR01893 aa-his-dipept aminoa 99.8 1.4E-19 3.1E-24 168.3 21.6 228 3-259 120-446 (477)
60 PRK13590 putative bifunctional 99.8 1.7E-19 3.7E-24 171.3 22.5 221 1-260 282-555 (591)
61 KOG2276 Metalloexopeptidases [ 99.8 3.4E-19 7.4E-24 155.2 18.4 230 1-252 144-427 (473)
62 PRK15026 aminoacyl-histidine d 99.8 3.6E-19 7.8E-24 165.2 18.9 230 2-260 125-453 (485)
63 PRK08554 peptidase; Reviewed 99.8 4.9E-18 1.1E-22 156.2 19.1 226 2-260 116-407 (438)
64 PF07687 M20_dimer: Peptidase 99.8 3.6E-18 7.7E-23 127.7 10.9 109 62-175 1-109 (111)
65 COG2195 PepD Di- and tripeptid 99.5 1.6E-13 3.4E-18 123.7 8.6 205 9-253 165-371 (414)
66 COG4187 RocB Arginine degradat 98.5 4.6E-07 9.9E-12 80.9 8.1 155 9-176 159-328 (553)
67 PF01546 Peptidase_M20: Peptid 97.4 7.8E-05 1.7E-09 60.3 2.1 56 2-60 49-105 (189)
68 PRK09864 putative peptidase; P 92.9 0.12 2.5E-06 46.5 3.8 39 11-57 193-231 (356)
69 TIGR03107 glu_aminopep glutamy 92.9 0.12 2.5E-06 46.5 3.8 40 10-57 197-236 (350)
70 PF04389 Peptidase_M28: Peptid 92.4 0.052 1.1E-06 43.5 0.9 51 2-55 39-89 (179)
71 PF05343 Peptidase_M42: M42 gl 92.2 0.13 2.8E-06 45.1 3.1 39 10-56 153-191 (292)
72 PRK09961 exoaminopeptidase; Pr 92.0 0.2 4.4E-06 44.9 4.1 39 10-56 185-223 (344)
73 COG1363 FrvX Cellulase M and r 90.7 0.22 4.7E-06 44.6 3.0 41 8-56 197-237 (355)
74 PRK10199 alkaline phosphatase 86.5 0.59 1.3E-05 41.8 2.8 33 2-39 156-188 (346)
75 TIGR03106 trio_M42_hydro hydro 82.3 0.84 1.8E-05 40.9 2.0 26 2-27 196-221 (343)
76 PRK15026 aminoacyl-histidine d 59.8 21 0.00045 33.7 5.6 43 124-173 344-386 (485)
77 COG2234 Iap Predicted aminopep 52.7 12 0.00026 34.3 2.8 35 2-41 241-275 (435)
78 KOG2194 Aminopeptidases of the 42.4 14 0.00029 37.0 1.4 51 2-56 176-226 (834)
79 KOG2195 Transferrin receptor a 39.8 22 0.00047 35.1 2.4 34 3-39 387-420 (702)
80 cd06406 PB1_P67 A PB1 domain i 35.2 1.5E+02 0.0033 20.5 6.3 29 144-172 8-36 (80)
81 KOG3135 1,4-benzoquinone reduc 34.9 28 0.0006 27.8 1.8 17 244-260 128-144 (203)
82 PRK02813 putative aminopeptida 31.0 39 0.00086 31.3 2.5 45 12-56 252-311 (428)
83 cd06411 PB1_p51 The PB1 domain 30.1 1.9E+02 0.0041 20.0 5.8 30 143-172 3-32 (78)
84 PF03780 Asp23: Asp23 family; 23.8 2.7E+02 0.0059 19.7 5.6 37 142-178 57-93 (108)
85 PHA02448 hypothetical protein 23.4 1.5E+02 0.0033 22.6 4.0 39 57-95 60-101 (192)
86 PRK06156 hypothetical protein; 23.3 1.9E+02 0.0041 27.4 5.7 40 126-171 241-280 (520)
87 PRK02256 putative aminopeptida 22.2 65 0.0014 30.2 2.3 31 3-34 271-301 (462)
88 PF01546 Peptidase_M20: Peptid 22.2 86 0.0019 24.5 2.8 36 214-250 109-145 (189)
No 1
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.97 E-value=5.3e-30 Score=231.50 Aligned_cols=227 Identities=22% Similarity=0.292 Sum_probs=184.3
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEEEecCCCc
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v~G~~~Hs 81 (267)
+.|++.+..++++|+|+|++|||+|+ .|++++++++.+++ +|++++.||+...+.++++|..+++|+++|+++|+
T Consensus 113 ~~l~~~~~~~~~~i~l~~~~dEE~g~---~G~~~~~~~~~~~~--~d~~i~~ep~~~~i~~~~~G~~~~~i~~~G~~~Hs 187 (377)
T PRK08588 113 IELKEQGQLLNGTIRLLATAGEEVGE---LGAKQLTEKGYADD--LDALIIGEPSGHGIVYAHKGSMDYKVTSTGKAAHS 187 (377)
T ss_pred HHHHHcCCCCCCcEEEEEEcccccCc---hhHHHHHhcCccCC--CCEEEEecCCCceeEEEEEEEEEEEEEEEeechhc
Confidence 45777777889999999999999987 79999998876543 57899999988888999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHH
Q 024487 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (267)
Q Consensus 82 s~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~ 161 (267)
|.|+.|.||+..|++++..++++.. .+...+ ...+.++++++.|+ ||...|+||++|++.+|+|+.|+++.++
T Consensus 188 s~p~~g~nAi~~~~~~l~~l~~~~~-~~~~~~-----~~~~~~t~~v~~i~-gG~~~nvip~~~~~~~d~R~~p~~~~~~ 260 (377)
T PRK08588 188 SMPELGVNAIDPLLEFYNEQKEYFD-SIKKHN-----PYLGGLTHVVTIIN-GGEQVNSVPDEAELEFNIRTIPEYDNDQ 260 (377)
T ss_pred cCCccccCHHHHHHHHHHHHHHHhh-hhcccC-----ccCCCCceeeeEEe-CCCcCCcCCCeEEEEEEeccCCCCCHHH
Confidence 9999999999999999999987632 222111 12245789999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCc-cccC
Q 024487 162 VMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNP-YSIT 240 (267)
Q Consensus 162 v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~-~~~~ 240 (267)
+.++|++.+++.... .+.++++++....+|+.+++++++++.+++++++++|.++. ..++
T Consensus 261 v~~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 321 (377)
T PRK08588 261 VISLLQEIINEVNQN-------------------GAAQLSLDIYSNHRPVASDKDSKLVQLAKDVAKSYVGQDIPLSAIP 321 (377)
T ss_pred HHHHHHHHHHHHhhc-------------------cCCceEEEEecCCCCcCCCCCCHHHHHHHHHHHHhhCCCCceecCC
Confidence 999999999876432 12445666666678888888999999999999998887444 4556
Q ss_pred CCcchHHHHHH--hcc---eeeecC
Q 024487 241 GTLPLIRELQV--RYM---LFSMSD 260 (267)
Q Consensus 241 g~~~~~~~~~~--~g~---~f~~~~ 260 (267)
|++ +++++.. .|+ .|+|++
T Consensus 322 g~t-D~~~~~~~~~~ip~i~~Gpg~ 345 (377)
T PRK08588 322 GAT-DASSFLKKKPDFPVIIFGPGN 345 (377)
T ss_pred Ccc-cHHHHhhhcCCCCEEEECCCC
Confidence 666 5555543 344 577763
No 2
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.97 E-value=2.9e-29 Score=230.23 Aligned_cols=238 Identities=13% Similarity=0.134 Sum_probs=181.8
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCC-CeeeeecceEEEEEEEEecCCC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFH 80 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~-~i~~g~~G~~~~~i~v~G~~~H 80 (267)
+.|++.+.+++++|+|+|++|||+|+. .|..+|++++.++..++|++++.||+.. .+.++++|..+++|+++|+++|
T Consensus 136 ~~l~~~~~~~~~~v~~~~~~dEE~g~~--~g~~~l~~~~~~~~~~~d~~i~~ep~~~~~i~~~~~G~~~~~i~v~G~~~H 213 (427)
T PRK13013 136 EAFLAVYPDFAGSIEISGTADEESGGF--GGVAYLAEQGRFSPDRVQHVIIPEPLNKDRICLGHRGVWWAEVETRGRIAH 213 (427)
T ss_pred HHHHHhCCCCCccEEEEEEeccccCCh--hHHHHHHhcCCccccCCCEEEEecCCCCCceEEeeeeEEEEEEEEEccccc
Confidence 567777777889999999999999862 4788888777655334689999998874 6889999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCcc-ccC-CCCCCCeeeeEEEecCCCcc----------ceeCCeeEEE
Q 024487 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKE-QVY-GFETPSTMKPTQWSYPGGGI----------NQIPGECTVS 148 (267)
Q Consensus 81 ss~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~-~~~-~~~~~~t~~~~~i~~gg~~~----------n~ip~~a~~~ 148 (267)
++.|+.|+||+..|++++..|++++.......... ... ......+++++.|+ +|... |+||++|+++
T Consensus 214 ~~~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~~~~~~~~~~~n~IPd~a~~~ 292 (427)
T PRK13013 214 GSMPFLGDSAIRHMGAVLAEIEERLFPLLATRRTAMPVVPEGARQSTLNINSIH-GGEPEQDPDYTGLPAPCVADRCRIV 292 (427)
T ss_pred cCCCCcCcCHHHHHHHHHHHHHHHhhhhhhcccccCCCCCcccCCCceeeeEEe-CCCccccccccccccccCCceEEEE
Confidence 99999999999999999999987532111100000 000 01124789999999 88766 9999999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHH
Q 024487 149 GDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATE 228 (267)
Q Consensus 149 ~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~ 228 (267)
+|+|+.|+++.+++.++|++.+.+...... +.+++++.....+|+.++.++++++++.++++
T Consensus 293 idiR~~p~~~~~~v~~~i~~~i~~~~~~~~------------------~~~~~~~~~~~~~p~~~~~~~~lv~~l~~a~~ 354 (427)
T PRK13013 293 IDRRFLIEEDLDEVKAEITALLERLKRARP------------------GFAYEIRDLFEVLPTMTDRDAPVVRSVAAAIE 354 (427)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHhhCC------------------CceeEEEEcccCCcccCCCCCHHHHHHHHHHH
Confidence 999999999999999999999987654211 23445554445788889999999999999999
Q ss_pred HHhCCCCccccCCCcchHHHHHHhc-----ceeeecC
Q 024487 229 EVVGHVNPYSITGTLPLIRELQVRY-----MLFSMSD 260 (267)
Q Consensus 229 ~~~g~~~~~~~~g~~~~~~~~~~~g-----~~f~~~~ 260 (267)
+.+|.++.....|+..+++++.+.| +.|+|+.
T Consensus 355 ~~~g~~~~~~~~~g~~D~~~~~~~g~~~~~v~fGPg~ 391 (427)
T PRK13013 355 RVLGRQADYVVSPGTYDQKHIDRIGKLKNCIAYGPGI 391 (427)
T ss_pred HhhCCCCceeecCccCCHHHHHhcCCCCCEEEECCCC
Confidence 9888855443334433577777765 3588874
No 3
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.97 E-value=1.3e-28 Score=225.58 Aligned_cols=235 Identities=15% Similarity=0.145 Sum_probs=178.8
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEEEecCCCc
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v~G~~~Hs 81 (267)
+.|++.+.+++++|.|+|++|||+|+ .|+..++.++ +++|++++.||+...++.+++|..+++|+++|+++|+
T Consensus 147 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~G~~~~~~~~----~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~H~ 219 (422)
T PRK06915 147 EALIESGIELKGDVIFQSVIEEESGG---AGTLAAILRG----YKADGAIIPEPTNMKFFPKQQGSMWFRLHVKGKAAHG 219 (422)
T ss_pred HHHHHcCCCCCCcEEEEEecccccCC---cchHHHHhcC----cCCCEEEECCCCCccceeecccEEEEEEEEEeecccc
Confidence 46777777788999999999999987 6888888654 3579999999998889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHH
Q 024487 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (267)
Q Consensus 82 s~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~ 161 (267)
|.|+.|+||+..+++++..|+++...............+..+.+++++.|+ ||...|+||++|++.+|+|+.|+++.++
T Consensus 220 s~p~~g~nAi~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~nvvP~~a~~~~d~R~~p~~~~~~ 298 (422)
T PRK06915 220 GTRYEGVSAIEKSMFVIDHLRKLEEKRNDRITDPLYKGIPIPIPINIGKIE-GGSWPSSVPDSVILEGRCGIAPNETIEA 298 (422)
T ss_pred CCCCcCcCHHHHHHHHHHHHHHHHHHhccccCCCcccCCCCCceEeEEEee-CCCCCCccCcEEEEEEEEEECCCCCHHH
Confidence 999999999999999999998763211000000000111124689999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecc-cCCcccCCCCCHHHHHHHHHHHHHhCCCCc-ccc
Q 024487 162 VMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVVGHVNP-YSI 239 (267)
Q Consensus 162 v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~-~~~ 239 (267)
+.++|++.+++...+.. ......+++++.. ..++..++.++++++++++++++++|..+. ...
T Consensus 299 v~~~i~~~l~~~~~~~~---------------~~~~~~~~v~~~~~~~~~~~~~~d~~lv~~l~~a~~~~~G~~~~~~~~ 363 (422)
T PRK06915 299 AKEEFENWIAELNDVDE---------------WFVEHPVEVEWFGARWVPGELEENHPLMTTLEHNFVEIEGNKPIIEAS 363 (422)
T ss_pred HHHHHHHHHHHHhccCh---------------hhhcCCceEEeecccCCcccCCCCCHHHHHHHHHHHHHhCCCCeecee
Confidence 99999999987654310 0001123444432 235667788899999999999998888544 344
Q ss_pred CCCcchHHHHHHh----cceeeecC
Q 024487 240 TGTLPLIRELQVR----YMLFSMSD 260 (267)
Q Consensus 240 ~g~~~~~~~~~~~----g~~f~~~~ 260 (267)
+|++ +++.+.+. .+.|+||.
T Consensus 364 ~g~t-D~~~~~~~~giP~v~fGpg~ 387 (422)
T PRK06915 364 PWGT-DGGLLTQIAGVPTIVFGPGE 387 (422)
T ss_pred eeec-cHHHHhccCCCCEEEECCCC
Confidence 5555 56667654 45677764
No 4
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.96 E-value=4.2e-28 Score=218.93 Aligned_cols=223 Identities=20% Similarity=0.175 Sum_probs=174.6
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCC-----CeeeeecceEEEEEEEEe
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~-----~i~~g~~G~~~~~i~v~G 76 (267)
+.|++.+.+++++|+|+|++|||+++. .|++.+++.....+..+|++++.||+.. .+..+++|..+++|+++|
T Consensus 112 ~~l~~~~~~~~~~i~~~~~~~EE~~~~--~G~~~~~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~g~~g~~~~~i~v~G 189 (375)
T PRK13009 112 ERFVAAHPDHKGSIAFLITSDEEGPAI--NGTVKVLEWLKARGEKIDYCIVGEPTSTERLGDVIKNGRRGSLTGKLTVKG 189 (375)
T ss_pred HHHHHhcCCCCceEEEEEEeecccccc--cCHHHHHHHHHHcCcCCCEEEEcCCCcccCCCCeEEEecceEEEEEEEEEe
Confidence 456666677889999999999998652 5899888653223345799999998743 367899999999999999
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCC-ccceeCCeeEEEEEEEeCC
Q 024487 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTP 155 (267)
Q Consensus 77 ~~~Hss~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~-~~n~ip~~a~~~~diR~~p 155 (267)
+++|++.|+.|.||+..|++++..|+....+.. ..++.+.+++++.|+ +|. ..|+||++|++.+|+|++|
T Consensus 190 ~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~--------~~~~~~~~~~i~~i~-~G~~~~nvip~~~~~~~diR~~~ 260 (375)
T PRK13009 190 VQGHVAYPHLADNPIHLAAPALAELAATEWDEG--------NEFFPPTSLQITNID-AGTGATNVIPGELEAQFNFRFST 260 (375)
T ss_pred cCcccCCCCcccCHHHHHHHHHHHHHhhhccCC--------CccCCCceEEEEEEe-cCCCCCcccCCcEEEEEEEecCC
Confidence 999999999999999999999999987532111 112345789999999 665 7899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCC
Q 024487 156 FYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN 235 (267)
Q Consensus 156 ~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~ 235 (267)
.++.+++.++|++.+++. +.++++++....+|+..+. +++++++.+++++++|..+
T Consensus 261 ~~~~e~i~~~i~~~~~~~-----------------------~~~~~~~~~~~~~p~~~~~-~~~~~~l~~a~~~~~g~~~ 316 (375)
T PRK13009 261 EHTAESLKARVEAILDKH-----------------------GLDYTLEWTLSGEPFLTPP-GKLVDAVVAAIEAVTGITP 316 (375)
T ss_pred CCCHHHHHHHHHHHHHhc-----------------------CCCeEEEEecCCCcccCCC-cHHHHHHHHHHHHHhCCCc
Confidence 999999999999888742 2334555444566666665 8999999999999889854
Q ss_pred c-cccCCCcchHHHHHHhc---ceeeecC
Q 024487 236 P-YSITGTLPLIRELQVRY---MLFSMSD 260 (267)
Q Consensus 236 ~-~~~~g~~~~~~~~~~~g---~~f~~~~ 260 (267)
. ..++|++ +++++.+.| +.|+|++
T Consensus 317 ~~~~~~g~t-da~~~~~~g~p~v~~Gp~~ 344 (375)
T PRK13009 317 ELSTSGGTS-DARFIADYGAQVVEFGPVN 344 (375)
T ss_pred eeeccCCCc-cHHHHHHcCCCeEEeccCc
Confidence 4 4555555 688888876 7888875
No 5
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.96 E-value=1.8e-28 Score=221.44 Aligned_cols=229 Identities=20% Similarity=0.213 Sum_probs=180.7
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCC-CCCeeeeecceEEEEEEEEecCCC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~-~~~i~~g~~G~~~~~i~v~G~~~H 80 (267)
+.|++.+.+++++|.|+|++|||.|+ .|++++++++.++ ++|++++.+++ .+.+.++++|..+++|+++|+++|
T Consensus 118 ~~l~~~~~~~~~~i~~~~~~~EE~g~---~G~~~~~~~~~~~--~~d~~i~~~~~~~~~v~~~~~G~~~~~i~~~G~~~H 192 (375)
T TIGR01910 118 KAIREAGIKPNGNIILQSVVDEESGE---AGTLYLLQRGYFK--DADGVLIPEPSGGDNIVIGHKGSIWFKLRVKGKQAH 192 (375)
T ss_pred HHHHHcCCCCCccEEEEEEcCcccCc---hhHHHHHHcCCCC--CCCEEEECCCCCCCceEEEecceEEEEEEEeeeecc
Confidence 45677777789999999999999987 7999999887554 36899999988 478899999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHH
Q 024487 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (267)
Q Consensus 81 ss~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~ 160 (267)
+|.|+.|.||+..|++++..|+++......... .......++++++.++ +|...|+||++|++.+|+|+.|+++.+
T Consensus 193 s~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~---~~~~~~~~t~~i~~i~-gG~~~nviP~~~~~~~diR~~~~~~~~ 268 (375)
T TIGR01910 193 ASFPQFGVNAIMKLAKLITELNELEEHIYARNS---YGFIPGPITFNPGVIK-GGDWVNSVPDYCEFSIDVRIIPEENLD 268 (375)
T ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHhhhccc---ccccCCCccccceeEE-CCCCcCcCCCEEEEEEEeeeCCCCCHH
Confidence 999999999999999999999886422111000 0011235789999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCC-cccCCCCCHHHHHHHHHHHHHhCCCC-ccc
Q 024487 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATN-GVACNLDSRGFHVLCKATEEVVGHVN-PYS 238 (267)
Q Consensus 161 ~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~v~~l~~a~~~~~g~~~-~~~ 238 (267)
++.++|++++++.... .+.+++++.....| ++..+.++++++++.+++++++|..+ +..
T Consensus 269 ~~~~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 329 (375)
T TIGR01910 269 EVKQIIEDVVKALSKS-------------------DGWLYENEPVVKWSGPNETPPDSRLVKALEAIIKKVRGIEPEVLV 329 (375)
T ss_pred HHHHHHHHHHHHHhhc-------------------CcHHhhCCCeeeecCCcCCCCCCHHHHHHHHHHHHHhCCCCeEee
Confidence 9999999999876432 12333443333345 67788999999999999999888744 345
Q ss_pred cCCCcchHHHHHHhcce---eeec
Q 024487 239 ITGTLPLIRELQVRYML---FSMS 259 (267)
Q Consensus 239 ~~g~~~~~~~~~~~g~~---f~~~ 259 (267)
++|++ ++.++++.|++ |+|+
T Consensus 330 ~~g~t-D~~~~~~~gip~v~~Gpg 352 (375)
T TIGR01910 330 STGGT-DARFLRKAGIPSIVYGPG 352 (375)
T ss_pred eccch-hHHHHHHcCCcEEEECCC
Confidence 56665 67888877654 6665
No 6
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.96 E-value=9.6e-28 Score=217.97 Aligned_cols=227 Identities=19% Similarity=0.233 Sum_probs=178.3
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCC-CeeeeecceEEEEEEEEecCCC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFH 80 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~-~i~~g~~G~~~~~i~v~G~~~H 80 (267)
+.|++.+ +++|+|+|++|||+|+ .|++++++++.+ ++|++++.+++.. .+.++++|..+++|+++|+++|
T Consensus 127 ~~l~~~~---~~~v~~~~~~~EE~g~---~G~~~~~~~~~~---~~d~~i~~~~~~~~~i~~~~~G~~~~~i~v~G~~~H 197 (394)
T PRK08651 127 ERLDPAG---DGNIELAIVPDEETGG---TGTGYLVEEGKV---TPDYVIVGEPSGLDNICIGHRGLVWGVVKVYGKQAH 197 (394)
T ss_pred HHHHhcC---CCCEEEEEecCccccc---hhHHHHHhccCC---CCCEEEEecCCCCCceEEecccEEEEEEEEEEeccc
Confidence 3455443 7999999999999987 799999987643 3689999998875 7899999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEE--EecCCCccceeCCeeEEEEEEEeCCCCC
Q 024487 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQ--WSYPGGGINQIPGECTVSGDVRLTPFYN 158 (267)
Q Consensus 81 ss~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~--i~~gg~~~n~ip~~a~~~~diR~~p~~~ 158 (267)
++.|+.|+||+..|++++..|++...+...... .........+++++. ++ +|...|+||++|++.+|+|+.|+++
T Consensus 198 ~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~--~~~~~~~~~~~~ig~~~i~-gG~~~nviP~~a~~~~diR~~~~~~ 274 (394)
T PRK08651 198 ASTPWLGINAFEAAAKIAERLKSSLSTIKSKYE--YDDERGAKPTVTLGGPTVE-GGTKTNIVPGYCAFSIDRRLIPEET 274 (394)
T ss_pred cCCCccccCHHHHHHHHHHHHHHHHHhhhcccc--ccccccCCCceeecceeee-CCCCCCccCCEEEEEEEeeeCCCCC
Confidence 999999999999999999999875321111000 000111245788888 88 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCC-cc
Q 024487 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PY 237 (267)
Q Consensus 159 ~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~-~~ 237 (267)
.+++.++|++.++..... ++.++++++....|+..+++++++++.+++++++++|..+ +.
T Consensus 275 ~e~i~~~i~~~~~~~~~~-------------------~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~g~~~~~~ 335 (394)
T PRK08651 275 AEEVRDELEALLDEVAPE-------------------LGIEVEFEITPFSEAFVTDPDSELVKALREAIREVLGVEPKKT 335 (394)
T ss_pred HHHHHHHHHHHHHHHhhc-------------------cCCCeeEEEecccCCccCCCCCHHHHHHHHHHHHHhCCCCcee
Confidence 999999999999876443 1344566655557888888999999999999999888743 34
Q ss_pred ccCCCcchHHHHHHhc---ceeeecC
Q 024487 238 SITGTLPLIRELQVRY---MLFSMSD 260 (267)
Q Consensus 238 ~~~g~~~~~~~~~~~g---~~f~~~~ 260 (267)
..+|++ +++++...| +.|+|+.
T Consensus 336 ~~~g~t-D~~~~~~~gip~v~~Gpg~ 360 (394)
T PRK08651 336 ISLGGT-DARFFGAKGIPTVVYGPGE 360 (394)
T ss_pred eecCcc-cHHHHhhCCCcEEEECCCC
Confidence 555666 577888776 5577764
No 7
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=99.96 E-value=1.2e-27 Score=215.64 Aligned_cols=223 Identities=20% Similarity=0.180 Sum_probs=170.6
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCC-----CeeeeecceEEEEEEEEe
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~-----~i~~g~~G~~~~~i~v~G 76 (267)
+.|++.+.+++++|+|+|++|||.++. .|+..+++........+|++|+.||+.. .++.+++|..+++|+++|
T Consensus 109 ~~l~~~~~~~~~~v~~~~~~dEE~~~~--~G~~~~~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~~~~G~~~~~v~v~G 186 (370)
T TIGR01246 109 ERFVKKNPDHKGSISLLITSDEEGTAI--DGTKKVVETLMARDELIDYCIVGEPSSVKKLGDVIKNGRRGSITGNLTIKG 186 (370)
T ss_pred HHHHHhcCCCCCcEEEEEEeccccCCC--cCHHHHHHHHHhcCCCCCEEEEcCCCCcccCCceEEEeeeEEEEEEEEEEc
Confidence 345566667889999999999998752 5899887642122345799999998642 377899999999999999
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCC-ccceeCCeeEEEEEEEeCC
Q 024487 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTP 155 (267)
Q Consensus 77 ~~~Hss~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~-~~n~ip~~a~~~~diR~~p 155 (267)
+++|++.|+.|.||+..|++++..|++...+ .. ..+..+++++++.|+ +|. ..|+||++|++.+|+|+.|
T Consensus 187 ~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~---~~-----~~~~~~~t~~i~~i~-~g~~~~nvvP~~~~~~~diR~~~ 257 (370)
T TIGR01246 187 IQGHVAYPHLANNPIHKAAPALAELTAIKWD---EG-----NEFFPPTSLQITNIH-AGTGANNVIPGELYVQFNLRFST 257 (370)
T ss_pred cCcccCCcccCCCHHHHHHHHHHHHhhhhhc---cC-----CccCCCCceEeeeee-cCCCCCcccCCceEEEEEEecCC
Confidence 9999999999999999999999998765221 11 122345789999999 775 6899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCC
Q 024487 156 FYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN 235 (267)
Q Consensus 156 ~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~ 235 (267)
+++.+++.+.|++.++.. +.++++++....+|+..+ ++++++.+++++++++|..+
T Consensus 258 ~~~~~~v~~~i~~~~~~~-----------------------~~~~~v~~~~~~~p~~~~-~~~~~~~~~~a~~~~~g~~~ 313 (370)
T TIGR01246 258 EVSDEILKQRVEAILDQH-----------------------GLDYDLEWSLSGEPFLTN-DGKLIDKAREAIEETNGIKP 313 (370)
T ss_pred CCCHHHHHHHHHHHHHHc-----------------------CCCEEEEEecCCcceeCC-CCHHHHHHHHHHHHHhCCCC
Confidence 999999999998887642 223455544445566566 89999999999999888854
Q ss_pred c-cccCCCcchHHHHHHh---cceeeecC
Q 024487 236 P-YSITGTLPLIRELQVR---YMLFSMSD 260 (267)
Q Consensus 236 ~-~~~~g~~~~~~~~~~~---g~~f~~~~ 260 (267)
. ..++|++ +++.+... .+.|+|++
T Consensus 314 ~~~~~~g~~-d~~~~~~~g~p~~~~Gp~~ 341 (370)
T TIGR01246 314 ELSTGGGTS-DGRFIALMGAEVVEFGPVN 341 (370)
T ss_pred ceecCCCCc-hHHHHHHcCCCEEEecCCc
Confidence 4 4455555 67777764 45666664
No 8
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.96 E-value=7e-27 Score=212.54 Aligned_cols=226 Identities=23% Similarity=0.272 Sum_probs=172.4
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHc--cccCcCCCCcEEEec---CCCCCeeeeecceEEEEEEEEe
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD--GLLNKLKGGPLYWID---TADKQPCIGTGGMIPWKLHVTG 76 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~--~~~~~~~~d~~i~~e---~~~~~i~~g~~G~~~~~i~v~G 76 (267)
+.|++.+.+++++|.|+|++|||.|+. .|+.++++. +.+++ .|++++.+ ++...++.+++|..+++|+++|
T Consensus 130 ~~l~~~~~~~~~~v~~~~~~dEE~g~~--~g~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~i~~~~~G~~~~~v~v~G 205 (400)
T PRK13983 130 KALMDLGIRPKYNLGLAFVSDEETGSK--YGIQYLLKKHPELFKK--DDLILVPDAGNPDGSFIEIAEKSILWLKFTVKG 205 (400)
T ss_pred HHHHHhCCCCCCcEEEEEEeccccCCc--ccHHHHHhhcccccCC--CCEEEEecCCCCCCceeEEeecceEEEEEEEEe
Confidence 567777878999999999999998863 489999976 33332 47788754 4444578899999999999999
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCC-CCCeeeeEEEecCC-CccceeCCeeEEEEEEEeC
Q 024487 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLT 154 (267)
Q Consensus 77 ~~~Hss~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~i~~gg-~~~n~ip~~a~~~~diR~~ 154 (267)
+++|+|.|+.|+||+..+++++..+++.+.+.+...+ ..+. ...+++++.+. +| ...|+||++|++++|+|+.
T Consensus 206 ~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~g~~~~nvvp~~~~~~~diR~~ 280 (400)
T PRK13983 206 KQCHASTPENGINAHRAAADFALELDEALHEKFNAKD----PLFDPPYSTFEPTKKE-ANVDNINTIPGRDVFYFDCRVL 280 (400)
T ss_pred EccccCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccc----cccCCCCcccccceee-cCCcCCcccCCeeEEEEEEEeC
Confidence 9999999999999999999999999873222222111 0111 12456777787 55 6899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecc-cCCcccCCCCCHHHHHHHHHHHHHhCC
Q 024487 155 PFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVVGH 233 (267)
Q Consensus 155 p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~v~~l~~a~~~~~g~ 233 (267)
|+++.++++++|++.+++.... .+.+++++... ..+++.++.++++++++.+++++++|.
T Consensus 281 p~~~~~~v~~~l~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~~~~~~~~~v~~l~~a~~~~~g~ 341 (400)
T PRK13983 281 PDYDLDEVLKDIKEIADEFEEE-------------------YGVKIEVEIVQREQAPPPTPPDSEIVKKLKRAIKEVRGI 341 (400)
T ss_pred CCCCHHHHHHHHHHHHHHhccc-------------------cCcceeEEEeeccCCccCCCCCcHHHHHHHHHHHHhcCC
Confidence 9999999999999999875432 13445555444 456777889999999999999998887
Q ss_pred CCc-cccCCCcchHHHHHHhccee
Q 024487 234 VNP-YSITGTLPLIRELQVRYMLF 256 (267)
Q Consensus 234 ~~~-~~~~g~~~~~~~~~~~g~~f 256 (267)
++. ..++|++ +++++...|+.-
T Consensus 342 ~~~~~~~~g~t-d~~~~~~~gip~ 364 (400)
T PRK13983 342 EPKVGGIGGGT-VAAFLRKKGYPA 364 (400)
T ss_pred CceeeeecCcH-HHHHHHHcCCCE
Confidence 444 4555555 788887776643
No 9
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.96 E-value=4.4e-27 Score=215.86 Aligned_cols=234 Identities=13% Similarity=0.144 Sum_probs=179.2
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEEEecCCCc
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v~G~~~Hs 81 (267)
+.|++.+.+++++|.|+|++|||.++ .|+..++..+ +.+|++|+.||+...+.++++|..+++|+++|+++|+
T Consensus 151 ~~l~~~~~~~~~~i~~~~~~dEE~~g---~g~~~~~~~~----~~~d~~iv~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs 223 (427)
T PRK06837 151 DALRAAGLAPAARVHFQSVIEEESTG---NGALSTLQRG----YRADACLIPEPTGEKLVRAQVGVIWFRLRVRGAPVHV 223 (427)
T ss_pred HHHHHcCCCCCCcEEEEEEeccccCC---HhHHHHHhcC----cCCCEEEEcCCCCCccccccceeEEEEEEEEeecccc
Confidence 45677777889999999999999886 6888887654 3578999999988888999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCCCCCC--ccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCH
Q 024487 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHP--KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (267)
Q Consensus 82 s~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~--~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~ 159 (267)
|.|+.|.||+..|++++..|+++... ..... .........+.+++++.|+ ||...|+||++|++.+++|+.|+++.
T Consensus 224 ~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~~~~~~~~~~~~~~~~t~ni~~i~-gG~~~nvVP~~~~~~~~ir~~p~~~~ 301 (427)
T PRK06837 224 REAGTGANAIDAAYHLIQALRELEAE-WNARKASDPHFEDVPHPINFNVGIIK-GGDWASSVPAWCDLDCRIAIYPGVTA 301 (427)
T ss_pred CCcccCcCHHHHHHHHHHHHHHHHHH-HhhcccCCCcccCCCCceeEeeeeEe-CCCCCCccCCEEEEEEEEeECCCCCH
Confidence 99999999999999999999876321 11100 0000112235689999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecc-cCCcccCCCCCHHHHHHHHHHHHHhCCCCc-c
Q 024487 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVVGHVNP-Y 237 (267)
Q Consensus 160 ~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~-~ 237 (267)
+++.+.|++.+++...+.. ...+..+++++.. ..+|+.+++++++++.+.+++++++|.++. .
T Consensus 302 ~~v~~~i~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~a~~~~~g~~~~~~ 366 (427)
T PRK06837 302 ADAQAEIEACLAAAARDDR---------------FLSNNPPEVVWSGFLAEGYVLEPGSEAEAALARAHAAVFGGPLRSF 366 (427)
T ss_pred HHHHHHHHHHHHHHHhcCh---------------hhhhCCCeEEEEecccCCcCCCCCCHHHHHHHHHHHHHhCCCCeee
Confidence 9999999999987543311 0001112344332 467888999999999999999998887444 4
Q ss_pred ccCCCcchHHHHHH-hcc---eeeecC
Q 024487 238 SITGTLPLIRELQV-RYM---LFSMSD 260 (267)
Q Consensus 238 ~~~g~~~~~~~~~~-~g~---~f~~~~ 260 (267)
.++|++ +++.+.. .|+ .|+|++
T Consensus 367 ~~~g~t-Da~~~~~~~gip~v~~Gp~~ 392 (427)
T PRK06837 367 VTTAYT-DTRFYGLYYGIPALCYGPSG 392 (427)
T ss_pred EEeecc-chHHHhccCCCCEEEECCCC
Confidence 555555 5777764 555 477764
No 10
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.96 E-value=6.7e-27 Score=208.83 Aligned_cols=204 Identities=19% Similarity=0.233 Sum_probs=164.2
Q ss_pred CCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEEEecCCCcCCCCCCCCH
Q 024487 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINP 90 (267)
Q Consensus 11 ~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v~G~~~Hss~p~~g~na 90 (267)
++++|.|+|++|||.|+ .|+++++++. ++|++++.||+.+.+.++++|..+++|+++|+++|++.|+.|.||
T Consensus 107 ~~~~v~~~~~~dEE~g~---~G~~~~~~~~-----~~d~~i~~ep~~~~i~~~~~g~~~~~i~~~G~~~H~s~p~~g~nA 178 (347)
T PRK08652 107 EDLNVGIAFVSDEEEGG---RGSALFAERY-----RPKMAIVLEPTDLKVAIAHYGNLEAYVEVKGKPSHGACPESGVNA 178 (347)
T ss_pred cCCCEEEEEecCcccCC---hhHHHHHHhc-----CCCEEEEecCCCCceeeecccEEEEEEEEEeeecccCCCCcCcCH
Confidence 46799999999999987 7999998642 358999999988889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHH
Q 024487 91 LELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170 (267)
Q Consensus 91 i~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i 170 (267)
+..|++++..|+++.... .. .+ ..+++++.++ +|...|+||++|++.+|+|++|.++.+++.+++++.+
T Consensus 179 i~~~a~~i~~l~~~~~~~-~~-------~~--~~~~~~~~i~-gg~~~nviP~~~~~~~diR~~~~~~~~~v~~~i~~~~ 247 (347)
T PRK08652 179 IEKAFEMLEKLKELLKAL-GK-------YF--DPHIGIQEII-GGSPEYSIPALCRLRLDARIPPEVEVEDVLDEIDPIL 247 (347)
T ss_pred HHHHHHHHHHHHHHHHhh-hc-------cc--CCCCcceeee-cCCCCCccCCcEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 999999999998753211 10 11 1245677788 8899999999999999999999999999999999888
Q ss_pred HHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCC-ccccCCCcchHHHH
Q 024487 171 DDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIREL 249 (267)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~-~~~~~g~~~~~~~~ 249 (267)
++. +. ++++....|++..+.++++++.+++++++. |.++ +..++|++ +++++
T Consensus 248 ~~~-----------------------~v--~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~-g~~~~~~~~~g~t-Da~~~ 300 (347)
T PRK08652 248 DEY-----------------------TV--KYEYTEIWDGFELDEDEEIVQLLEKAMKEV-GLEPEFTVMRSWT-DAINF 300 (347)
T ss_pred Hhc-----------------------Cc--eEEEeccCCcccCCCCCHHHHHHHHHHHHh-CCCCCcCcCCccc-hhHHH
Confidence 531 22 333333457777888999999999999997 7743 44556665 78888
Q ss_pred HHh---cceeeecC
Q 024487 250 QVR---YMLFSMSD 260 (267)
Q Consensus 250 ~~~---g~~f~~~~ 260 (267)
... .+.|+|++
T Consensus 301 ~~~gip~v~~Gpg~ 314 (347)
T PRK08652 301 RYNGTKTVVWGPGE 314 (347)
T ss_pred HHCCCCEEEECCCc
Confidence 776 56777764
No 11
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.96 E-value=9e-27 Score=209.32 Aligned_cols=223 Identities=17% Similarity=0.172 Sum_probs=172.2
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEEEecCCCc
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v~G~~~Hs 81 (267)
+.|++. .++++|.|+|++|||+|+ .|++++++++. +++|++++.+|+...+..+++|..+++|+++|+++|+
T Consensus 111 ~~l~~~--~~~~~v~~~~~~~EE~g~---~G~~~~~~~~~---~~~d~~i~~ep~~~~~~~~~~G~~~~~v~v~G~~~Hs 182 (364)
T TIGR01892 111 PDLAAE--QLKKPLHLALTADEEVGC---TGAPKMIEAGA---GRPRHAIIGEPTRLIPVRAHKGYASAEVTVRGRSGHS 182 (364)
T ss_pred HHHHhc--CcCCCEEEEEEeccccCC---cCHHHHHHhcC---CCCCEEEECCCCCceeEEeeceEEEEEEEEEcccccc
Confidence 456554 468899999999999987 79999998764 3578999999988777889999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCC-CCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHH
Q 024487 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (267)
Q Consensus 82 s~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~ 160 (267)
+.|+.|.||+..+++++..|+++.. ...... ....+. ..++++++.|+ ||...|+||++|++.+|+|+.|+++.+
T Consensus 183 ~~p~~g~nAi~~~~~~i~~l~~~~~-~~~~~~--~~~~~~~~~~~~~i~~i~-gg~~~nviP~~~~~~~diR~~p~~~~~ 258 (364)
T TIGR01892 183 SYPDSGVNAIFRAGRFLQRLVHLAD-TLLRED--LDEGFTPPYTTLNIGVIQ-GGKAVNIIPGACEFVFEWRPIPGMDPE 258 (364)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHH-HhccCC--CCccCCCCCceEEEeeee-cCCCCcccCCeEEEEEEeecCCCCCHH
Confidence 9999999999999999999987521 111000 001121 24689999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCccccC
Q 024487 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSIT 240 (267)
Q Consensus 161 ~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~ 240 (267)
++.+.|++.++..... ..+.++++++...+|++.+++++++++.++++ ++..+. ..+
T Consensus 259 ~v~~~i~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-~~~ 315 (364)
T TIGR01892 259 ELLQLLETIAQALVRD------------------EPGFEVQIEVVSTDPGVNTEPDAELVAFLEEL----SGNAPE-VVS 315 (364)
T ss_pred HHHHHHHHHHHHHHhh------------------CCCceEEEEEccCCCCcCCCCCCHHHHHHHHH----hCCCCc-eec
Confidence 9999999999875432 11455666666667888889999999988754 354322 234
Q ss_pred CCcchHHHHHHhcc---eeeecC
Q 024487 241 GTLPLIRELQVRYM---LFSMSD 260 (267)
Q Consensus 241 g~~~~~~~~~~~g~---~f~~~~ 260 (267)
+++ +++.+...|+ .|+|++
T Consensus 316 ~~t-D~~~~~~~gip~v~~Gpg~ 337 (364)
T TIGR01892 316 YGT-EAPQFQELGAEAVVCGPGD 337 (364)
T ss_pred ccc-cHHHHHhCCCcEEEECCCC
Confidence 444 5777777644 566765
No 12
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=99.95 E-value=3.6e-26 Score=206.29 Aligned_cols=231 Identities=15% Similarity=0.147 Sum_probs=169.1
Q ss_pred cCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEEEecCCCcCCCCCC
Q 024487 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKA 87 (267)
Q Consensus 8 ~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v~G~~~Hss~p~~g 87 (267)
+..++++|.|+|++|||+++.. .|+..+++... ..+++|++++.||+.+.+++|++|..+++|+++|+++|+|.|+.|
T Consensus 124 ~~~~~~~i~~~~~~dEE~~~~~-~G~~~~~~~~~-~~~~~d~~iv~Ept~~~i~~g~~G~~~~~i~v~G~~~H~s~p~~g 201 (373)
T TIGR01900 124 ETELKHDLTLIAYDCEEVAAEK-NGLGHIRDAHP-DWLAADFAIIGEPTGGGIEAGCNGNIRFDVTAHGVAAHSARAWLG 201 (373)
T ss_pred ccCCCCCEEEEEEecccccCCC-CCHHHHHHhCc-ccccCCEEEEECCCCCcccccceeeEEEEEEEEeeccccCCCCCC
Confidence 4467899999999999986311 48999997642 223578999999999889999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHH
Q 024487 88 INPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQ 167 (267)
Q Consensus 88 ~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~ 167 (267)
.||+..|++++..|+++....... + .+....+++++.|+ ||...|+||++|++.+|+|+.|+++.+++.++|+
T Consensus 202 ~NAi~~~~~~i~~l~~l~~~~~~~-~-----~~~~~~t~~v~~I~-GG~~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~ 274 (373)
T TIGR01900 202 DNAIHKAADIINKLAAYEAAEVNI-D-----GLDYREGLNATFCE-GGKANNVIPDEARMHLNFRFAPDKDLAEAKALMM 274 (373)
T ss_pred CCHHHHHHHHHHHHHHhhcccccc-c-----CCcccceEEEEEEe-CCCCCcccCCeEEEEEEEecCCCcCHHHHHHHHH
Confidence 999999999999998753211110 0 11123689999999 9999999999999999999999999999999997
Q ss_pred HHHHHhh----hhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCccccCCCc
Q 024487 168 EYVDDIN----ENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTL 243 (267)
Q Consensus 168 ~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~g~~ 243 (267)
+.+.... +.+..... + .. ..+++++.....+++..+.++++++.+.+++++++|..+.. ..|++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~------~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~g~t 342 (373)
T TIGR01900 275 GADAGAELGNGEHVAEGGE------F----DG-QDGIEIAMEDEAGGALPGLGAPLAQDLIDAVGEEKGRDPLA-KFGWT 342 (373)
T ss_pred hhhhhhhhhHHHHHHhhcc------c----cc-cccceEEEcccCCCCCCCCCCHHHHHHHHHHHhccCCCccc-ccCCc
Confidence 7654321 01100000 0 00 01234444333455556778999999999999988875443 45555
Q ss_pred chHHHHHHhcc---eeeecC
Q 024487 244 PLIRELQVRYM---LFSMSD 260 (267)
Q Consensus 244 ~~~~~~~~~g~---~f~~~~ 260 (267)
+++.+...|+ .|+|++
T Consensus 343 -D~~~~~~~gip~v~~Gpg~ 361 (373)
T TIGR01900 343 -DVARFSALGIPALNFGAGD 361 (373)
T ss_pred -cHHHHHhcCCCEEEeCCCC
Confidence 4566666554 577765
No 13
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=99.95 E-value=1.5e-26 Score=208.13 Aligned_cols=222 Identities=20% Similarity=0.277 Sum_probs=169.6
Q ss_pred hhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCC--------eeeeecceEEEEEEE
Q 024487 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQ--------PCIGTGGMIPWKLHV 74 (267)
Q Consensus 3 ~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~--------i~~g~~G~~~~~i~v 74 (267)
.|++.+..++++|.|+|++|||.+ .|++++++++.+++ +|++++.|++... ...+++|..+++|++
T Consensus 104 ~l~~~~~~~~~~i~~~~~~dEE~~----~G~~~~~~~~~~~~--~d~~i~~e~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 177 (363)
T TIGR01891 104 LLKKLADLLEGTVRLIFQPAEEGG----GGATKMIEDGVLDD--VDAILGLHPDPSIPAGTVGLRPGTIMAAADKFEVTI 177 (363)
T ss_pred HHHhchhhCCceEEEEEeecCcCc----chHHHHHHCCCCCC--cCEEEEECCCCCCCCeEEEECCCcceeecceEEEEE
Confidence 455666667899999999999985 59999998775543 4789999875421 124578899999999
Q ss_pred EecCCCcCCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeC
Q 024487 75 TGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLT 154 (267)
Q Consensus 75 ~G~~~Hss~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~ 154 (267)
+|+++|++.|+.|.||+..|++++..++++......+ ....+++++.|+ +|...|+||++|++.+|+|+.
T Consensus 178 ~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~---------~~~~~~~i~~i~-gG~~~nvvP~~~~~~~diR~~ 247 (363)
T TIGR01891 178 HGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDP---------SRPAVVTVGIIE-AGGAPNVIPDKASMSGTVRSL 247 (363)
T ss_pred EeecccccCcccccCHHHHHHHHHHHHHHHhhccCCC---------CCCcEEEEEEEE-cCCCCcEECCeeEEEEEEEeC
Confidence 9999999999999999999999999998764322221 124689999999 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 024487 155 PFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV 234 (267)
Q Consensus 155 p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~ 234 (267)
|+++.+++.++|++.+++..... +.++++++....|+. ..++++++.+++++++++|..
T Consensus 248 ~~~~~e~~~~~i~~~~~~~~~~~-------------------~~~ve~~~~~~~p~~--~~~~~l~~~l~~a~~~~~g~~ 306 (363)
T TIGR01891 248 DPEVRDQIIDRIERIVEGAAAMY-------------------GAKVELNYDRGLPAV--TNDPALTQILKEVARHVVGPE 306 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh-------------------CCeEEEEEecCCCCc--cCCHHHHHHHHHHHHHhcCcc
Confidence 98888899999988888764431 345566655444443 456899999999999988842
Q ss_pred C----ccccCCCcc--hHHHHHHhcceeeecCC
Q 024487 235 N----PYSITGTLP--LIRELQVRYMLFSMSDV 261 (267)
Q Consensus 235 ~----~~~~~g~~~--~~~~~~~~g~~f~~~~~ 261 (267)
+ +..++||++ +.+...+..|.|.++..
T Consensus 307 ~~~~~~~~~~gg~Da~~~~~~~P~~~~f~~~~~ 339 (363)
T TIGR01891 307 NVAEDPEVTMGSEDFAYYSQKVPGAFFFLGIGN 339 (363)
T ss_pred ceeccCCCCccccCHHHHHHhCCeeEEEEecCC
Confidence 2 234666663 23334557788999874
No 14
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.95 E-value=1.5e-26 Score=209.57 Aligned_cols=232 Identities=17% Similarity=0.219 Sum_probs=171.7
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEEEecCCCc
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v~G~~~Hs 81 (267)
+.|++. .++++|+|+|++|||.|+ .|+++++++.....+++|++++.+|+...++++++|..+++|+++|+++|+
T Consensus 117 ~~l~~~--~~~~~i~~~~~~dEE~g~---~G~~~l~~~~~~~~~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~Hs 191 (385)
T PRK07522 117 PELAAA--PLRRPLHLAFSYDEEVGC---LGVPSMIARLPERGVKPAGCIVGEPTSMRPVVGHKGKAAYRCTVRGRAAHS 191 (385)
T ss_pred HHHHhC--CCCCCEEEEEEeccccCC---ccHHHHHHHhhhcCCCCCEEEEccCCCCeeeeeecceEEEEEEEEeecccc
Confidence 455555 467899999999999987 799999976432234578999999988889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCC-CCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHH
Q 024487 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFET-PSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (267)
Q Consensus 82 s~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~ 160 (267)
|.|+.|.||+..|++++..|+++..+...... ....+.. .++++++.|+ +|...|+||++|++.+|+|+.|+++.+
T Consensus 192 ~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~--~~~~~~~~~~t~~i~~i~-gG~~~nviP~~a~~~~diR~~~~~~~~ 268 (385)
T PRK07522 192 SLAPQGVNAIEYAARLIAHLRDLADRLAAPGP--FDALFDPPYSTLQTGTIQ-GGTALNIVPAECEFDFEFRNLPGDDPE 268 (385)
T ss_pred CCCccCcCHHHHHHHHHHHHHHHHHHHhhcCC--CCcCCCCCcceeEEeeee-cCccccccCCceEEEEEEccCCCCCHH
Confidence 99999999999999999999875321111000 0011211 2688999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-hhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCcccc
Q 024487 161 DVMKRLQEYVDDI-NENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSI 239 (267)
Q Consensus 161 ~v~~~l~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~~~~ 239 (267)
++.++|++.+++. ...+. . ...+++++++....+|++.+++++++++.+++++ +..+....
T Consensus 269 ~i~~~i~~~i~~~~~~~~~---~-----------~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~ 330 (385)
T PRK07522 269 AILARIRAYAEAELLPEMR---A-----------VHPEAAIEFEPLSAYPGLDTAEDAAAARLVRALT----GDNDLRKV 330 (385)
T ss_pred HHHHHHHHHHHhhcchhhh---h-----------hcCCCcEEEEeccCCCCCCCCCCcHHHHHHHHHh----CCCCcceE
Confidence 9999999998762 11100 0 1124556666555688998999999998887654 44333333
Q ss_pred CCCcchHHHHHHhcc---eeeecC
Q 024487 240 TGTLPLIRELQVRYM---LFSMSD 260 (267)
Q Consensus 240 ~g~~~~~~~~~~~g~---~f~~~~ 260 (267)
.+++ +++.++..|+ .|+|++
T Consensus 331 ~~~t-d~~~~~~~gip~v~~Gpg~ 353 (385)
T PRK07522 331 AYGT-EAGLFQRAGIPTVVCGPGS 353 (385)
T ss_pred eeec-chHHhccCCCCEEEECCCC
Confidence 4444 4566666655 566653
No 15
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.95 E-value=3.7e-26 Score=204.23 Aligned_cols=196 Identities=16% Similarity=0.186 Sum_probs=158.4
Q ss_pred ccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCC-CCeeeeecceEEEEEEEEecCCCcCCCCCCCCHH
Q 024487 13 STVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPL 91 (267)
Q Consensus 13 ~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~-~~i~~g~~G~~~~~i~v~G~~~Hss~p~~g~nai 91 (267)
.+|.|+|++|||+|+ .|++++++++ .++|++++.||+. ..+.++++|..+++|+++|+++|+|.|+ .||+
T Consensus 112 ~~i~~~~~~dEE~g~---~G~~~l~~~~----~~~d~~i~~ep~~~~~i~~~~kG~~~~~i~v~G~~~Has~p~--~nAi 182 (346)
T PRK00466 112 IKVMVSGLADEESTS---IGAKELVSKG----FNFKHIIVGEPSNGTDIVVEYRGSIQLDIMCEGTPEHSSSAK--SNLI 182 (346)
T ss_pred CCEEEEEEcCcccCC---ccHHHHHhcC----CCCCEEEEcCCCCCCceEEEeeEEEEEEEEEEeeccccCCCC--cCHH
Confidence 469999999999987 7999999865 2478999999986 4688999999999999999999999886 4999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 024487 92 ELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171 (267)
Q Consensus 92 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~ 171 (267)
..|++++..+.+.. ..+ ...+++++.++ ||...|+||++|++.+|+|+.|+++.+++++++++.+.
T Consensus 183 ~~~~~~l~~l~~~~-~~~------------~~~t~~~~~i~-gG~~~NvvP~~a~~~~diR~~p~~~~~~v~~~i~~~~~ 248 (346)
T PRK00466 183 VDISKKIIEVYKQP-ENY------------DKPSIVPTIIR-AGESYNVTPAKLYLHFDVRYAINNKRDDLISEIKDKFQ 248 (346)
T ss_pred HHHHHHHHHHHhcc-ccC------------CCCcceeeEEe-cCCcCcccCCceEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 99999999887531 111 13678999999 99999999999999999999999999999998888776
Q ss_pred HhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCc-cccCCCcchHHHHH
Q 024487 172 DINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNP-YSITGTLPLIRELQ 250 (267)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~-~~~~g~~~~~~~~~ 250 (267)
+. +++.....||+.++.++|+++++.+++++. |..+. ...+|++ +++++.
T Consensus 249 ~~---------------------------~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~-g~~~~~~~~~g~t-D~~~~~ 299 (346)
T PRK00466 249 EC---------------------------GLKIVDETPPVKVSINNPVVKALMRALLKQ-NIKPRLVRKAGTS-DMNILQ 299 (346)
T ss_pred hC---------------------------cEeeccCCCCcccCCCCHHHHHHHHHHHHh-CCCceEEecCCcC-cHHHHH
Confidence 41 223334567888889999999999999985 76444 4445555 566666
Q ss_pred Hh---cceeeecC
Q 024487 251 VR---YMLFSMSD 260 (267)
Q Consensus 251 ~~---g~~f~~~~ 260 (267)
+. .++|+|+.
T Consensus 300 ~~~~~~v~fGpg~ 312 (346)
T PRK00466 300 KITTSIATYGPGN 312 (346)
T ss_pred HhCCCEEEECCCC
Confidence 64 45788875
No 16
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=99.95 E-value=4.8e-26 Score=203.93 Aligned_cols=224 Identities=21% Similarity=0.302 Sum_probs=181.8
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCC----Cee--ee--ecceEEEEEE
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK----QPC--IG--TGGMIPWKLH 73 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~----~i~--~g--~~G~~~~~i~ 73 (267)
++|++++.+++++|+|+|+|.||.+ .|+..|+++|.++++ +|++|..|+.++ .+. .| ..+...++|+
T Consensus 116 ~~L~~~~~~~~Gtv~~ifQPAEE~~----~Ga~~mi~~G~~~~~-vD~v~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~ 190 (392)
T COG1473 116 LALAEHKDNLPGTVRLIFQPAEEGG----GGAKAMIEDGVFDDF-VDAVFGLHPGPGLPVGTVALRPGALMAAADEFEIT 190 (392)
T ss_pred HHHHhhhhhCCcEEEEEeccccccc----ccHHHHHhcCCcccc-ccEEEEecCCCCCCCceEEeecccceeecceEEEE
Confidence 5678776789999999999999998 489999999999987 899999998543 332 23 5678899999
Q ss_pred EEecCCCcCCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEe
Q 024487 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (267)
Q Consensus 74 v~G~~~Hss~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~ 153 (267)
++|+++|++.|+.++||+.+++.++..|+.+..+..+|.+ +..++++.++ +|...|+||+++++.+++|.
T Consensus 191 ~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~~---------~~vv~vg~~~-aG~a~NVIpd~A~l~gtvR~ 260 (392)
T COG1473 191 FKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLD---------SAVVTVGKIE-AGTAANVIPDSAELEGTIRT 260 (392)
T ss_pred EEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCcc---------CeEEEEEEec-CCCcCCcCCCeeEEEEEeec
Confidence 9999999999999999999999999999998776666532 4788999999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCC
Q 024487 154 TPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGH 233 (267)
Q Consensus 154 ~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~ 233 (267)
. ..++++.+.+.++++++.++ ..+++++++.+...+|+..+++ .+.+.+.+++++..|.
T Consensus 261 ~----~~~~~~~~~~~i~~ia~g~a---------------~~~g~~~ei~~~~~~p~~~Nd~--~~~~~~~~~~~~~~~~ 319 (392)
T COG1473 261 F----SDEVREKLEARIERIAKGIA---------------AAYGAEAEIDYERGYPPVVNDP--ALTDLLAEAAEEVGGE 319 (392)
T ss_pred C----CHHHHHHHHHHHHHHHHHHH---------------HHhCCeEEEEecCCCCCccCCH--HHHHHHHHHHHHhccc
Confidence 9 47777777777777777766 4557888888888888887765 5699999999998873
Q ss_pred -----CCccccCCCcchHHHHHHh-cceeeecCC
Q 024487 234 -----VNPYSITGTLPLIRELQVR-YMLFSMSDV 261 (267)
Q Consensus 234 -----~~~~~~~g~~~~~~~~~~~-g~~f~~~~~ 261 (267)
.....+.||.+++-+++.. |.-|-.|..
T Consensus 320 ~~~~~~~~~~~~gsEDf~~~~~~~Pg~~~~lG~~ 353 (392)
T COG1473 320 EVVVVELPPSMAGSEDFGYYLEKVPGAFFFLGTG 353 (392)
T ss_pred cceecccCCCCCccchHHHHHHhCCeeEEEeecC
Confidence 1223466888777777763 444555543
No 17
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=99.95 E-value=6.5e-26 Score=206.12 Aligned_cols=225 Identities=14% Similarity=0.082 Sum_probs=168.4
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEEEecCCCc
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v~G~~~Hs 81 (267)
+.|++++..+++++.+++++|||.++ +.|+.++++++. +++|++++.||+...+..+++|..+++|+++|+++|+
T Consensus 121 ~~l~~~~~~~~~~v~~~~~~dEE~~~--g~~~~~~~~~~~---~~~d~~i~~ep~~~~i~~g~~G~~~~~v~v~G~~~Hs 195 (395)
T TIGR03526 121 KIIKDLGLLDDYTLLVTGTVQEEDCD--GLCWQYIIEEDK---IKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHG 195 (395)
T ss_pred HHHHHcCCCCCceEEEEEecccccCC--cHhHHHHHhccC---CCCCEEEecCCCCceEEEEcceEEEEEEEEecCCCcc
Confidence 45677776678899999999999532 157778886543 3579999999988889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCC-ccceeCCeeEEEEEEEeCCCCCHH
Q 024487 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTPFYNVT 160 (267)
Q Consensus 82 s~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~-~~n~ip~~a~~~~diR~~p~~~~~ 160 (267)
|.|+.|+||+..|++++..|+++.. .... + .+....+++++.|+ +|. ..|+||++|++++|+|+.|+++.+
T Consensus 196 ~~p~~g~nAi~~~~~~i~~l~~~~~-~~~~-~-----~~~~~~~~~v~~i~-~g~~~~nviP~~~~~~~d~R~~~~~~~~ 267 (395)
T TIGR03526 196 SAPERGDNAIYKMAPILKELSQLNA-NLVE-D-----PFLGKGTLTVSEIF-FSSPSRCAVADGCTISIDRRLTWGETWE 267 (395)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhhh-hhcC-C-----cccCccceeeeeee-cCCCCCCccCCeEEEEEEEecCCCCCHH
Confidence 9999999999999999999987532 1110 0 11234689999998 554 799999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEE-------------EecccCCcccCCCCCHHHHHHHHHH
Q 024487 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTL-------------TFDEATNGVACNLDSRGFHVLCKAT 227 (267)
Q Consensus 161 ~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~p~~~~~~~~~~v~~l~~a~ 227 (267)
++++.|++.++..... .++++ ......|++.++.++|+++++.+++
T Consensus 268 ~~~~~i~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 326 (395)
T TIGR03526 268 YALEQIRNLPAVQGAE---------------------AEVEMYEYDRPSYTGLVYPTECYFPTWVLPEDHLITKAALETY 326 (395)
T ss_pred HHHHHHHHHHHhcCCc---------------------ceEEEeccccccccccccccccccCccccCCCCHHHHHHHHHH
Confidence 9999998887542111 11111 1122467888999999999999999
Q ss_pred HHHhCCCCcc-ccCCCcchHHHHHHhc---ceeeecC
Q 024487 228 EEVVGHVNPY-SITGTLPLIRELQVRY---MLFSMSD 260 (267)
Q Consensus 228 ~~~~g~~~~~-~~~g~~~~~~~~~~~g---~~f~~~~ 260 (267)
++++|..+.. ...++++...++...| +.|+|++
T Consensus 327 ~~~~g~~~~~~~~~~~~~~~~~~~~~g~p~v~~Gpg~ 363 (395)
T TIGR03526 327 KRLFGKEPGVDKWTFSTNGVSIMGRHGIPVIGFGPGD 363 (395)
T ss_pred HHHhCCCCceeeeeeecccceehhhcCCCEEEECCcc
Confidence 9999884433 2233332223344444 5677765
No 18
>PRK07338 hypothetical protein; Provisional
Probab=99.94 E-value=9.8e-26 Score=205.37 Aligned_cols=213 Identities=15% Similarity=0.072 Sum_probs=167.0
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCC--CCeeeeecceEEEEEEEEecCC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~--~~i~~g~~G~~~~~i~v~G~~~ 79 (267)
+.|++.+.+++++|.|+|++|||+|+ .|++.+++++. . +.|++++.||+. +.+..+++|..+++|+++|+++
T Consensus 142 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~~~~~~-~--~~~~~i~~ep~~~~~~v~~~~kG~~~~~v~v~G~~a 215 (402)
T PRK07338 142 LAFERSPLADKLGYDVLINPDEEIGS---PASAPLLAELA-R--GKHAALTYEPALPDGTLAGARKGSGNFTIVVTGRAA 215 (402)
T ss_pred HHHHhcCCCCCCCEEEEEECCcccCC---hhhHHHHHHHh-c--cCcEEEEecCCCCCCcEEeecceeEEEEEEEEeEcc
Confidence 56777777788999999999999987 78999998753 2 357899999874 5678899999999999999999
Q ss_pred CcCC-CCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCC
Q 024487 80 HSGL-PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (267)
Q Consensus 80 Hss~-p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~ 158 (267)
|+|. |+.|+||+..|++++..|+++. +.. ...+++++.|+ +|...|+||++|++.+|+|+.|+++
T Consensus 216 Hs~~~p~~g~nAi~~~~~~i~~l~~l~-~~~------------~~~t~~vg~i~-gG~~~nvVP~~a~~~~d~R~~~~~~ 281 (402)
T PRK07338 216 HAGRAFDEGRNAIVAAAELALALHALN-GQR------------DGVTVNVAKID-GGGPLNVVPDNAVLRFNIRPPTPED 281 (402)
T ss_pred cCCCCcccCccHHHHHHHHHHHHHhhh-ccC------------CCcEEEEEEEe-cCCCCceeccccEEEEEeccCCHHH
Confidence 9995 8899999999999999998753 111 13689999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCC-HHHHHHHHHHHHHhCCCCc-
Q 024487 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDS-RGFHVLCKATEEVVGHVNP- 236 (267)
Q Consensus 159 ~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~v~~l~~a~~~~~g~~~~- 236 (267)
.+++.++|++.+++.... .+.+++++....+||+..+.++ +++++++++.++ +|.++.
T Consensus 282 ~~~v~~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~-~g~~~~~ 341 (402)
T PRK07338 282 AAWAEAELKKLIAQVNQR-------------------HGVSLHLHGGFGRPPKPIDAAQQRLFEAVQACGAA-LGLTIDW 341 (402)
T ss_pred HHHHHHHHHHHHhccccC-------------------CCeEEEEEccccCCCCCCCcchHHHHHHHHHHHHH-cCCCccc
Confidence 999999888888764321 1445555433345777666554 799999998776 576443
Q ss_pred cccCCCcchHHHHHHhcce
Q 024487 237 YSITGTLPLIRELQVRYML 255 (267)
Q Consensus 237 ~~~~g~~~~~~~~~~~g~~ 255 (267)
...+|++ ++..+...|++
T Consensus 342 ~~~~g~t-Da~~~~~~giP 359 (402)
T PRK07338 342 KDSGGVC-DGNNLAAAGLP 359 (402)
T ss_pred ccCCccc-hHHHHhhcCCC
Confidence 4455555 67777777765
No 19
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.94 E-value=2.9e-25 Score=200.97 Aligned_cols=220 Identities=20% Similarity=0.216 Sum_probs=167.2
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEEEecCCCc
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v~G~~~Hs 81 (267)
+.|++. .++++|.|+|++|||+|+ .|++++++++. +++|+++++||+...+.++++|..+++|+++|+++|+
T Consensus 124 ~~l~~~--~~~~~i~~~~~~~EE~g~---~G~~~~~~~~~---~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~H~ 195 (383)
T PRK05111 124 RDIDLT--KLKKPLYILATADEETSM---AGARAFAEATA---IRPDCAIIGEPTSLKPVRAHKGHMSEAIRITGQSGHS 195 (383)
T ss_pred HHHhhc--CCCCCeEEEEEeccccCc---ccHHHHHhcCC---CCCCEEEEcCCCCCceeecccceEEEEEEEEeechhc
Confidence 345443 467899999999999987 79999998753 3468999999998778889999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCC-CCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHH
Q 024487 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGF-ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (267)
Q Consensus 82 s~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~ 160 (267)
|.|+.|.||+..+++++..++.+... +.... ....+ ...++++++.|+ ||...|+||++|++.+|+|+.|+++.+
T Consensus 196 ~~p~~g~nai~~~~~~i~~l~~~~~~-~~~~~--~~~~~~~~~~t~~i~~i~-gg~~~NvVP~~~~~~~diR~~p~~~~~ 271 (383)
T PRK05111 196 SDPALGVNAIELMHDVIGELLQLRDE-LQERY--HNPAFTVPYPTLNLGHIH-GGDAPNRICGCCELHFDIRPLPGMTLE 271 (383)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHHH-HhccC--CCccCCCCCCceeEeeee-cCCcCcccCCceEEEEEEecCCCCCHH
Confidence 99999999999999999998875311 10000 00011 124789999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEec-ccCCcccCCCCCHHHHHHHHHHHHHhCCCCcccc
Q 024487 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFD-EATNGVACNLDSRGFHVLCKATEEVVGHVNPYSI 239 (267)
Q Consensus 161 ~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~~~~ 239 (267)
++.++|++.+++..+.. +.+++++.. ...|++.++.++++++.+.++ +|..+. ..
T Consensus 272 ~v~~~i~~~i~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~g~~~~-~~ 327 (383)
T PRK05111 272 DLRGLLREALAPVSERW-------------------PGRITVAPLHPPIPGYECPADHQLVRVVEKL----LGHKAE-VV 327 (383)
T ss_pred HHHHHHHHHHHHHHhhC-------------------CCeEEEeccccCCCCcCCCCCCHHHHHHHHH----hCCCCc-ee
Confidence 99999999998765431 344555432 346777788888888887655 355332 22
Q ss_pred CCCcchHHHHHHhcceeee
Q 024487 240 TGTLPLIRELQVRYMLFSM 258 (267)
Q Consensus 240 ~g~~~~~~~~~~~g~~f~~ 258 (267)
.+++ ++.++...|++.+.
T Consensus 328 ~~~~-Da~~~~~~g~p~v~ 345 (383)
T PRK05111 328 NYCT-EAPFIQQLGCPTLV 345 (383)
T ss_pred eeec-cHHHHHhcCCCEEE
Confidence 3444 46777877776443
No 20
>PRK08201 hypothetical protein; Provisional
Probab=99.94 E-value=2e-25 Score=206.48 Aligned_cols=234 Identities=18% Similarity=0.187 Sum_probs=169.8
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCC-----CeeeeecceEEEEEEEEe
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~-----~i~~g~~G~~~~~i~v~G 76 (267)
+.|++.+..++++|.|+|++|||+|+ .|+..++++.. +.+++|++++.|++.. .++++++|..+++|+++|
T Consensus 133 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~ii~e~~~~~~~~~~i~~g~kG~~~~~l~v~G 208 (456)
T PRK08201 133 EALLKVEGTLPVNVKFCIEGEEEIGS---PNLDSFVEEEK-DKLAADVVLISDTTLLGPGKPAICYGLRGLAALEIDVRG 208 (456)
T ss_pred HHHHHhcCCCCCCEEEEEEcccccCC---ccHHHHHHhhH-HhccCCEEEEeCCCcCCCCCEEEEEecCCeEEEEEEEEe
Confidence 45555555678899999999999998 78888887532 2356789999998742 478999999999999999
Q ss_pred cCC--CcCCCCC-CCCHHHHHHHHHHHHHHhhc--------cCCCCCCcc-------------------c-cCCC-----
Q 024487 77 KLF--HSGLPHK-AINPLELAMEALKVIQTRFY--------KDFPPHPKE-------------------Q-VYGF----- 120 (267)
Q Consensus 77 ~~~--Hss~p~~-g~nai~~~~~~i~~l~~~~~--------~~~~~~~~~-------------------~-~~~~----- 120 (267)
+++ |||.|.. +.||+..|+++++.|+++.. +.+.+.... . ...+
T Consensus 209 ~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (456)
T PRK08201 209 AKGDLHSGLYGGAVPNALHALVQLLASLHDEHGTVAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGY 288 (456)
T ss_pred CCCCCccccccCcCCCHHHHHHHHHHhcCCCCCCEecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcch
Confidence 998 9997654 57999999999999875310 000000000 0 0000
Q ss_pred ------CCCCeeeeEEEecCCC----ccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCccccc
Q 024487 121 ------ETPSTMKPTQWSYPGG----GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYV 190 (267)
Q Consensus 121 ------~~~~t~~~~~i~~gg~----~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 190 (267)
....|++++.|+ ||. ..|+||++|++.+|+|+.|+++.+++.++|++.+++...
T Consensus 289 ~~~~~~~~~~t~~i~~i~-gg~~~~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~l~~~~~--------------- 352 (456)
T PRK08201 289 TALERTWARPTLELNGVY-GGFQGEGTKTVIPAEAHAKITCRLVPDQDPQEILDLIEAHLQAHTP--------------- 352 (456)
T ss_pred HHHHHHHhCCcEEEEeee-cCCCCCCCceEECcceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCC---------------
Confidence 013578898887 553 479999999999999999999999999999999876311
Q ss_pred CCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCccccCCC-cch-HHHHHHhcc---eeeecC
Q 024487 191 LPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGT-LPL-IRELQVRYM---LFSMSD 260 (267)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~g~-~~~-~~~~~~~g~---~f~~~~ 260 (267)
.+.++++......||+.++.++++++++.+++++++|..+...+.|+ .|. +.+....|+ +|.|+.
T Consensus 353 -----~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~g~~~~~~~~gg~~~~~~~~~~~~gip~v~~GpG~ 422 (456)
T PRK08201 353 -----AGVRVTIRRFDKGPAFVAPIDHPAIQAAARAYEAVYGTEAAFTRMGGSIPVVETFSSQLHIPIVLMGFGL 422 (456)
T ss_pred -----CCeEEEEEECCCcCceecCCCCHHHHHHHHHHHHHhCCCceecCCCCcHHHHHHHHHHhCCCEEEecCCC
Confidence 13445555445678889999999999999999999988555544444 343 444444554 566664
No 21
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.94 E-value=1.7e-25 Score=204.32 Aligned_cols=214 Identities=20% Similarity=0.149 Sum_probs=168.6
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCC--CCeeeeecceEEEEEEEEecCC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~--~~i~~g~~G~~~~~i~v~G~~~ 79 (267)
+.|++.+.+++++|+|+|++|||+|+ .|++.++++.. . ++|++|+.||+. +.+.++++|..+++|+++|+++
T Consensus 149 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~G~~~~~~~~~-~--~~d~~i~~ep~~~~~~v~~~~~G~~~~~v~v~G~~~ 222 (410)
T PRK06133 149 KILQQLGFKDYGTLTVLFNPDEETGS---PGSRELIAELA-A--QHDVVFSCEPGRAKDALTLATSGIATALLEVKGKAS 222 (410)
T ss_pred HHHHHcCCCCCCCEEEEEECCcccCC---ccHHHHHHHHh-c--cCCEEEEeCCCCCCCCEEEeccceEEEEEEEEeecc
Confidence 45677777788999999999999987 79999997642 2 468999999876 4788999999999999999999
Q ss_pred CcC-CCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCC
Q 024487 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (267)
Q Consensus 80 Hss-~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~ 158 (267)
|+| .|+.|.||+..+++++..|+++.. . . ...+++++.++ ||...|+||++|++.+|+|+.|.++
T Consensus 223 Hsg~~p~~g~nAi~~~~~~i~~l~~~~~-~---~---------~~~t~~~~~i~-gG~~~nvIP~~~~~~~diR~~~~~~ 288 (410)
T PRK06133 223 HAGAAPELGRNALYELAHQLLQLRDLGD-P---A---------KGTTLNWTVAK-AGTNRNVIPASASAQADVRYLDPAE 288 (410)
T ss_pred ccCCCcccCcCHHHHHHHHHHHHHhccC-C---C---------CCeEEEeeEEE-CCCCCceeCCccEEEEEEEECCHHH
Confidence 985 799999999999999999877521 1 1 13678999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCC-HHHHHHHHHHHHHhCCC-Cc
Q 024487 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDS-RGFHVLCKATEEVVGHV-NP 236 (267)
Q Consensus 159 ~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~v~~l~~a~~~~~g~~-~~ 236 (267)
.+++.++|++.+++.. ..+.++++++...+|++.+++++ ++++++.+++++ .|.. .+
T Consensus 289 ~~~v~~~i~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 347 (410)
T PRK06133 289 FDRLEADLQEKVKNKL--------------------VPDTEVTLRFERGRPPLEANAASRALAEHAQGIYGE-LGRRLEP 347 (410)
T ss_pred HHHHHHHHHHHHhccC--------------------CCCeEEEEEeccccCCcccCcchHHHHHHHHHHHHH-cCCCccc
Confidence 9999998888887511 12455666655667887776654 677777777776 3543 22
Q ss_pred --cccCCCcchHHHHHHhcceee
Q 024487 237 --YSITGTLPLIRELQVRYMLFS 257 (267)
Q Consensus 237 --~~~~g~~~~~~~~~~~g~~f~ 257 (267)
..++|++ ++.++...|++.+
T Consensus 348 ~~~~~~g~t-Da~~~~~~gip~v 369 (410)
T PRK06133 348 IDMGTGGGT-DAAFAAGSGKAAV 369 (410)
T ss_pred cccCCCCCc-hHHHHHhcCCCce
Confidence 3455555 6888888887433
No 22
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=99.94 E-value=2.2e-25 Score=202.64 Aligned_cols=225 Identities=14% Similarity=0.080 Sum_probs=167.5
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEEEecCCCc
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v~G~~~Hs 81 (267)
+.|++.+..++++|.|++++|||.++ +.|.++++++. .+.+|++++.||+...+..+++|..+++|+++|+++|+
T Consensus 121 ~~l~~~g~~~~~~i~~~~~~dEE~~~--g~~~~~~~~~~---~~~~d~~iv~ep~~~~i~~g~~G~~~~~v~~~G~~~Hs 195 (395)
T TIGR03320 121 KIIKDLGLLDDYTLLVTGTVQEEDCD--GLCWQYIIEED---GIKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHG 195 (395)
T ss_pred HHHHHcCCCCCceEEEEecccccccC--chHHHHHHHhc---CCCCCEEEEcCCCccceEEecceEEEEEEEEeeecccc
Confidence 45777777778899999999999753 14556777543 24579999999998889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCC-ccceeCCeeEEEEEEEeCCCCCHH
Q 024487 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTPFYNVT 160 (267)
Q Consensus 82 s~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~-~~n~ip~~a~~~~diR~~p~~~~~ 160 (267)
|.|+.|.||+..+++++..|+++... ... + .+.+..+++++.|+ +|. ..|+||++|++.+|+|+.|+++.+
T Consensus 196 s~p~~g~nAi~~~~~~l~~l~~~~~~-~~~-~-----~~~~~~t~~v~~i~-~g~~~~NviP~~~~~~~diR~~p~~~~~ 267 (395)
T TIGR03320 196 SAPERGDNAIYKMAPILKELSQLNAN-LVE-D-----PFLGKGTLTVSEIF-FSSPSRCAVADGCTISIDRRLTWGETWE 267 (395)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHh-hcC-C-----cccCcCceeeeeee-cCCCCcCccCCEEEEEEEEecCCCCCHH
Confidence 99999999999999999999875321 110 0 12234688999998 554 789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEE-------------EecccCCcccCCCCCHHHHHHHHHH
Q 024487 161 DVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTL-------------TFDEATNGVACNLDSRGFHVLCKAT 227 (267)
Q Consensus 161 ~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~p~~~~~~~~~~v~~l~~a~ 227 (267)
++.+.|++.+..... ..++++ ......|++.++.++|+++++.+++
T Consensus 268 ~i~~~i~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 326 (395)
T TIGR03320 268 YALEQIRNLPAVQGA---------------------EAKVEMYNYDRPSYTGLVYPTECYFPTWVLPEDHLITKAALETY 326 (395)
T ss_pred HHHHHHHHHHhhcCC---------------------CceEeeeccCcccccccccccccccCccccCCCCHHHHHHHHHH
Confidence 999999887653210 111111 1122467888999999999999999
Q ss_pred HHHhCCCCc-cccCCCcchHHHHHH---hcceeeecC
Q 024487 228 EEVVGHVNP-YSITGTLPLIRELQV---RYMLFSMSD 260 (267)
Q Consensus 228 ~~~~g~~~~-~~~~g~~~~~~~~~~---~g~~f~~~~ 260 (267)
++++|..+. ....+++....++.. ..+.|+|++
T Consensus 327 ~~~~g~~~~~~~~~~~~~~~~~~~~~g~p~v~~Gpg~ 363 (395)
T TIGR03320 327 KRLFGKEPGVDKWTFSTNGVSIMGRHGIPVIGFGPGD 363 (395)
T ss_pred HHHhCCCCceeecceecccceehhhcCCCEEEECCCc
Confidence 999888543 233333322233333 345677765
No 23
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.94 E-value=1.9e-25 Score=204.60 Aligned_cols=234 Identities=18% Similarity=0.192 Sum_probs=175.6
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEEEecC---
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKL--- 78 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v~G~~--- 78 (267)
++|++.+..++++|+|+|++|||+|+ .|++++++++. .+|++++.||+... ..+++|...+.++++|++
T Consensus 131 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~G~~~~~~~~~----~~d~~i~~ep~~~~-~~~~~G~~~~~~~v~g~~~~~ 202 (421)
T PRK08596 131 QLLHEAGIELPGDLIFQSVIGEEVGE---AGTLQCCERGY----DADFAVVVDTSDLH-MQGQGGVITGWITVKSPQTFH 202 (421)
T ss_pred HHHHHcCCCCCCcEEEEEEeccccCC---cCHHHHHhcCC----CCCEEEECCCCCCc-cccccceeeEEEEEEeecccc
Confidence 56778887889999999999999987 79999998653 46899999997654 489999988888888764
Q ss_pred -------CCcCCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCC-CCCCeeeeEEEecCCCccceeCCeeEEEEE
Q 024487 79 -------FHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGF-ETPSTMKPTQWSYPGGGINQIPGECTVSGD 150 (267)
Q Consensus 79 -------~Hss~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~t~~~~~i~~gg~~~n~ip~~a~~~~d 150 (267)
+|++.|+.|.||+..|++++..|+.+... +.... ....+ ...++++++.|+ ||...|+||++|++.+|
T Consensus 203 ~~~~~~~~H~~~p~~G~nai~~~~~~i~~l~~~~~~-~~~~~--~~~~~~~~~~t~~v~~i~-gG~~~nvvP~~~~~~~d 278 (421)
T PRK08596 203 DGTRRQMIHAGGGLFGASAIEKMMKIIQSLQELERH-WAVMK--SYPGFPPGTNTINPAVIE-GGRHAAFIADECRLWIT 278 (421)
T ss_pred cccccccccccCCccCcCHHHHHHHHHHHHHHHHHH-Hhhcc--cCccCCCCCcceeeeeee-CCCCCCccCceEEEEEE
Confidence 79999999999999999999999875211 10000 00011 134789999999 99999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEE------Ee-cccCCcccCCCCCHHHHHH
Q 024487 151 VRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTL------TF-DEATNGVACNLDSRGFHVL 223 (267)
Q Consensus 151 iR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~p~~~~~~~~~~v~~l 223 (267)
+|+.|+++.+++.++|++.+++.......++ .....+++ +. ....|++.+++++|+++++
T Consensus 279 ~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 345 (421)
T PRK08596 279 VHFYPNETYEQVIKEIEEYIGKVAAADPWLR-------------ENPPQFKWGGESMIEDRGEIFPSLEIDSEHPAVKTL 345 (421)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHhcChhhh-------------hCCceeEEecccccccccccCCCccCCCCchHHHHH
Confidence 9999999999999999999987543210000 00111211 11 1236888899999999999
Q ss_pred HHHHHHHhCCCCccccCCCcchHHHHHHhcce---eeecC
Q 024487 224 CKATEEVVGHVNPYSITGTLPLIRELQVRYML---FSMSD 260 (267)
Q Consensus 224 ~~a~~~~~g~~~~~~~~g~~~~~~~~~~~g~~---f~~~~ 260 (267)
.+++++++|.++.....++.++++++...|++ |.|+.
T Consensus 346 ~~a~~~~~g~~~~~~~~~g~tD~~~~~~~gip~v~~Gpg~ 385 (421)
T PRK08596 346 SSAHESVLSKNAILDMSTTVTDGGWFAEFGIPAVIYGPGT 385 (421)
T ss_pred HHHHHHHhCCCCeeeEEeeecchhhhhhcCCCEEEECCCc
Confidence 99999999985554444455588888877765 66654
No 24
>PRK13004 peptidase; Reviewed
Probab=99.94 E-value=1.6e-25 Score=203.86 Aligned_cols=236 Identities=14% Similarity=0.127 Sum_probs=168.6
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEEEecCCCc
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v~G~~~Hs 81 (267)
+.|++.+..++++|+++|++|||.++ +.|+++++++. .+++|++++.|++...+.++++|..+++|+++|+++|+
T Consensus 123 ~~l~~~~~~~~~~i~~~~~~~EE~~~--g~~~~~~~~~~---~~~~d~~i~~e~~~~~i~~~~~G~~~~~v~v~G~~~Ha 197 (399)
T PRK13004 123 KIIKDLGLDDEYTLYVTGTVQEEDCD--GLCWRYIIEED---KIKPDFVVITEPTDLNIYRGQRGRMEIRVETKGVSCHG 197 (399)
T ss_pred HHHHhcCCCCCCeEEEEEEcccccCc--chhHHHHHHhc---CCCCCEEEEccCCCCceEEecceEEEEEEEEecccccc
Confidence 56788887889999999999999642 16788888753 24579999999998889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHH
Q 024487 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (267)
Q Consensus 82 s~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~ 161 (267)
+.|+.|.||+..|++++..|+.+... +.. ..+....+++++.|..|+...|+||++|++.+|+|+.|.++.++
T Consensus 198 ~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~------~~~~~~~~~~v~~i~~g~~~~nvvP~~~~~~~diR~~~~~~~~~ 270 (399)
T PRK13004 198 SAPERGDNAIYKMAPILNELEELNPN-LKE------DPFLGKGTLTVSDIFSTSPSRCAVPDSCAISIDRRLTVGETWES 270 (399)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhccc-ccc------CCcCCCceEEEeeeecCCCCCCccCCEEEEEEEEcCCCCCCHHH
Confidence 99999999999999999999875321 110 11223467899999833458999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhh--cccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCc-cc
Q 024487 162 VMKRLQEYVDDINENI--EKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNP-YS 238 (267)
Q Consensus 162 v~~~l~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~-~~ 238 (267)
+.+++++.+.....+. .......| .+ ..+.++....+|++.+++++++++.+.+++++++|.++. ..
T Consensus 271 v~~~i~~~~~~~~~~~~v~~~~~~~~---------~~-~~~~~~~~~~~p~~~~~~~~~~~~~l~~a~~~~~g~~~~~~~ 340 (399)
T PRK13004 271 VLAEIRALPAVKKANAKVSMYNYDRP---------SY-TGLVYPTECYFPTWLYPEDHEFVKAAVEAYKGLFGKAPEVDK 340 (399)
T ss_pred HHHHHHHHHhhccccceEEEecccCC---------Cc-ccccccccccccccccCCCCHHHHHHHHHHHHHhCCCCeecc
Confidence 9999988843211000 00000000 00 001223334468888899999999999999999887433 22
Q ss_pred ----cCCCcchHHHHHHhcceeeecC
Q 024487 239 ----ITGTLPLIRELQVRYMLFSMSD 260 (267)
Q Consensus 239 ----~~g~~~~~~~~~~~g~~f~~~~ 260 (267)
+.|+. +++.+.--.+.|+|+.
T Consensus 341 ~~~~td~~~-~~~~~Gip~v~~Gpg~ 365 (399)
T PRK13004 341 WTFSTNGVS-IAGRAGIPTIGFGPGK 365 (399)
T ss_pred cccccCCeE-EehhcCCCEEEECCCc
Confidence 22332 2222222345677764
No 25
>PRK06446 hypothetical protein; Provisional
Probab=99.94 E-value=1.8e-25 Score=205.62 Aligned_cols=223 Identities=16% Similarity=0.165 Sum_probs=163.8
Q ss_pred hhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCC------CeeeeecceEEEEEEEEe
Q 024487 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK------QPCIGTGGMIPWKLHVTG 76 (267)
Q Consensus 3 ~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~------~i~~g~~G~~~~~i~v~G 76 (267)
.|++.+ .++++|.|+|++|||+|+ .|+++++++.. +.+++|+++ .|++.. .++++++|..+++|+++|
T Consensus 117 ~l~~~~-~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~vi-~E~~~~~~~~~~~i~~~~kG~~~~~l~v~G 190 (436)
T PRK06446 117 HLIDKH-KLNVNVKFLYEGEEEIGS---PNLEDFIEKNK-NKLKADSVI-MEGAGLDPKGRPQIVLGVKGLLYVELVLRT 190 (436)
T ss_pred HHHHcC-CCCCCEEEEEEcccccCC---HhHHHHHHHHH-HHhCCCEEE-ECCCCccCCCCeEEEEecCeEEEEEEEEEe
Confidence 344443 578899999999999998 78999887631 224567876 477653 678999999999999999
Q ss_pred --cCCCcCCCCCCCCHHHHHHHHHHHHHHhhc--------cCCCCCCc-------------------c-----cc-----
Q 024487 77 --KLFHSGLPHKAINPLELAMEALKVIQTRFY--------KDFPPHPK-------------------E-----QV----- 117 (267)
Q Consensus 77 --~~~Hss~p~~g~nai~~~~~~i~~l~~~~~--------~~~~~~~~-------------------~-----~~----- 117 (267)
+++|+|.|+.|.||+..|+++++.|.+... +.+.+... . ..
T Consensus 191 ~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 270 (436)
T PRK06446 191 GTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVRELTEEERELLKKYDIDVEELRKALGFKELKYSDREK 270 (436)
T ss_pred CCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCCCCCCHHHHHHHHhCCCCHHHHHHHhCCccccCCCccc
Confidence 999999999999999999999999975310 00000000 0 00
Q ss_pred --CCCCCCCeeeeEEEecCC----CccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccC
Q 024487 118 --YGFETPSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVL 191 (267)
Q Consensus 118 --~~~~~~~t~~~~~i~~gg----~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 191 (267)
......++++++.+. +| ...|+||++|++.+|+|+.|+++.+++.+.|++.+.+..
T Consensus 271 ~~~~~~~~~t~nv~~i~-~g~~~~~~~nvvP~~a~~~~d~R~~p~~~~~~v~~~l~~~~~~~~----------------- 332 (436)
T PRK06446 271 IAEALLTEPTCNIDGFY-SGYTGKGSKTIVPSRAFAKLDFRLVPNQDPYKIFELLKKHLQKVG----------------- 332 (436)
T ss_pred HHHHHHhCCcEEEeeee-ccccCCCCCcEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHHcC-----------------
Confidence 001124788999998 55 467999999999999999999999999999999987631
Q ss_pred CCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCc-cccCCCcchHHHHHH-hcce
Q 024487 192 PDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNP-YSITGTLPLIRELQV-RYML 255 (267)
Q Consensus 192 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~-~~~~g~~~~~~~~~~-~g~~ 255 (267)
..+++++....+|+.++.++++++++.+++++++|..+. ....+|+.+++.+.+ .|+.
T Consensus 333 ------~~~~~~~~~~~~p~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~~g~~d~~~~~~~~gip 392 (436)
T PRK06446 333 ------FNGEIIVHGFEYPVRTSVNSKVVKAMIESAKRVYGTEPVVIPNSAGTQPMGLFVYKLGIR 392 (436)
T ss_pred ------CCeEEEEcCCcceeecCCCCHHHHHHHHHHHHHhCCCCceecCCCCcchHHHHHHHhCCC
Confidence 123455555577888889999999999999999988544 344444434555544 6754
No 26
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.94 E-value=2.6e-25 Score=199.01 Aligned_cols=207 Identities=19% Similarity=0.135 Sum_probs=160.5
Q ss_pred cCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCC-CCeeeeecceEEEEEEEEecCCCcCCCCC
Q 024487 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGTGGMIPWKLHVTGKLFHSGLPHK 86 (267)
Q Consensus 8 ~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~-~~i~~g~~G~~~~~i~v~G~~~Hss~p~~ 86 (267)
+.+++++|.|++++|||+|+ .|...++.++ ..+|++++.||++ +.++++++|..+++|+++|+++|||.|
T Consensus 107 ~~~~~~~i~~~~~~dEE~g~---~~~~~~l~~~----~~~d~~iv~Ept~~~~i~~~~kG~~~~~l~~~G~~~Hss~~-- 177 (348)
T PRK04443 107 EALVRARVSFVGAVEEEAPS---SGGARLVADR----ERPDAVIIGEPSGWDGITLGYKGRLLVTYVATSESFHSAGP-- 177 (348)
T ss_pred cccCCCCEEEEEEcccccCC---hhHHHHHHhc----cCCCEEEEeCCCCccceeeecccEEEEEEEEEeCCCccCCC--
Confidence 44688999999999999997 5666666554 2579999999987 468999999999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHH
Q 024487 87 AINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166 (267)
Q Consensus 87 g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l 166 (267)
|.||+..|++++..|+++.. ...+ ...++...+++++.++ . ..|+||++|++.+|+|+.|+++.+++.++|
T Consensus 178 g~NAi~~~~~~l~~l~~~~~-~~~~-----~~~~~~~~~~~i~~i~-~--~~n~iP~~~~~~~d~R~~p~~~~~~i~~~i 248 (348)
T PRK04443 178 EPNAAEDAIEWWLAVEAWFE-ANDG-----RERVFDQVTPKLVDFD-S--SSDGLTVEAEMTVGLRLPPGLSPEEAREIL 248 (348)
T ss_pred CCCHHHHHHHHHHHHHHHHh-cCcc-----ccccccccceeeeEEe-c--CCCCCCceEEEEEEEccCCCCCHHHHHHHH
Confidence 78999999999999987532 1111 1122335678888887 3 468999999999999999999999998888
Q ss_pred HHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCccccCCCcchH
Q 024487 167 QEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLI 246 (267)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~g~~~~~ 246 (267)
++.+.. . ++++....||+.++.++|+++.++++++++++.+.....+|++ ++
T Consensus 249 ~~~~~~-------------------------~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t-D~ 300 (348)
T PRK04443 249 DALLPT-------------------------G--TVTFTGAVPAYMVSKRTPLARAFRVAIREAGGTPRLKRKTGTS-DM 300 (348)
T ss_pred HHhCCC-------------------------c--EEEEecCCCceecCCCCHHHHHHHHHHHHhcCCcceeccccCC-cH
Confidence 877621 2 3344455788889999999999999999987654444555666 45
Q ss_pred HHHHH-hcc---eeeecC
Q 024487 247 RELQV-RYM---LFSMSD 260 (267)
Q Consensus 247 ~~~~~-~g~---~f~~~~ 260 (267)
+++.+ .|+ .|+|++
T Consensus 301 ~~~~~~~gip~v~~Gpg~ 318 (348)
T PRK04443 301 NVVAPAWGCPMVAYGPGD 318 (348)
T ss_pred HHHhhhcCCCEEEECCCC
Confidence 66654 455 577765
No 27
>PRK08737 acetylornithine deacetylase; Provisional
Probab=99.94 E-value=7.1e-25 Score=197.10 Aligned_cols=213 Identities=11% Similarity=0.062 Sum_probs=156.8
Q ss_pred CCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEEEecCCCcCCC-CCCCC
Q 024487 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLP-HKAIN 89 (267)
Q Consensus 11 ~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v~G~~~Hss~p-~~g~n 89 (267)
++++|.|+|++|||.|+. .|++.+++.+. ++|++++.||+...++++++|..+++|+++|+++|+|.| +.|+|
T Consensus 117 ~~~~v~~~~~~dEE~g~~--~g~~~~~~~~~----~~~~~iv~Ept~~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~N 190 (364)
T PRK08737 117 GDGDAAFLFSSDEEANDP--RCVAAFLARGI----PYEAVLVAEPTMSEAVLAHRGISSVLMRFAGRAGHASGKQDPSAS 190 (364)
T ss_pred cCCCEEEEEEcccccCch--hhHHHHHHhCC----CCCEEEEcCCCCceeEEecceeEEEEEEEEeeccccCCCcccCCC
Confidence 467999999999998862 48889987652 468999999999889999999999999999999999998 58999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHH
Q 024487 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (267)
Q Consensus 90 ai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~ 169 (267)
|+..|++++..+.+.......+. .......+++++.|+ ||...|+||++|++.+|+|+.|+++.++++++|++.
T Consensus 191 AI~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~t~~vg~i~-GG~~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~ 264 (364)
T PRK08737 191 ALHQAMRWGGQALDHVESLAHAR-----FGGLTGLRFNIGRVE-GGIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGF 264 (364)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc-----cCCCCCCceEEeeEe-cCCCCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHH
Confidence 99999999988765432211110 001124689999999 999999999999999999999999999999988766
Q ss_pred HHHhhhhhcccccCCCcccccCCCCCcceEEEEEecc-cCCcccCCCCCHHHHHHHHHHHHHhCCCCccccCCCcchHHH
Q 024487 170 VDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRE 248 (267)
Q Consensus 170 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~g~~~~~~~ 248 (267)
++.. ..++++.+.. ..++...+. ++++..+.+++.+..|.+.....++++ ++.+
T Consensus 265 ~~~~-----------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~t-Da~~ 319 (364)
T PRK08737 265 AEPA-----------------------AATFEETFRGPSLPSGDIAR-AEERRLAARDVADALDLPIGNAVDFWT-EASL 319 (364)
T ss_pred HHHc-----------------------CCceEEEeccCCCCCcccCc-chHHHHHHHHHHhhhcCCCCceecccc-CHHH
Confidence 6531 1122333222 345555554 466766655555445654433444444 7888
Q ss_pred HHHhcc---eeeecC
Q 024487 249 LQVRYM---LFSMSD 260 (267)
Q Consensus 249 ~~~~g~---~f~~~~ 260 (267)
+...|+ .|+||+
T Consensus 320 ~~~~Gip~v~~GpG~ 334 (364)
T PRK08737 320 FSAAGYTALVYGPGD 334 (364)
T ss_pred HHHcCCCEEEECCCC
Confidence 887775 566764
No 28
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.94 E-value=1.9e-25 Score=203.45 Aligned_cols=228 Identities=17% Similarity=0.174 Sum_probs=165.6
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEec-----CCC-CCeeeeecceEEEEEEEE
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWID-----TAD-KQPCIGTGGMIPWKLHVT 75 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e-----~~~-~~i~~g~~G~~~~~i~v~ 75 (267)
+.|++.+..++++|.|+|++|||.|+. .|++++++++.+.. .|.+++.+ |+. ..+..+++|..+++|+++
T Consensus 125 ~~l~~~~~~~~~~v~l~~~~dEE~g~~--~G~~~~~~~~~~~~--~~~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~ 200 (400)
T TIGR01880 125 RNLKASGFKFKRTIHISFVPDEEIGGH--DGMEKFAKTDEFKA--LNLGFALDEGLASPDDVYRVFYAERVPWWVVVTAP 200 (400)
T ss_pred HHHHHcCCCCCceEEEEEeCCcccCcH--hHHHHHHHhhhccC--CceEEEEcCCCcccccccceeEEeeEEEEEEEEEe
Confidence 467777778899999999999998752 49999998764443 35566553 333 367889999999999999
Q ss_pred ecCCCcCCCCCCCCHHHHHHHHHHHHHHhhccC---CCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEE
Q 024487 76 GKLFHSGLPHKAINPLELAMEALKVIQTRFYKD---FPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVR 152 (267)
Q Consensus 76 G~~~Hss~p~~g~nai~~~~~~i~~l~~~~~~~---~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR 152 (267)
|+++|++.|.. .||+..|++++..|+++.... +.... ...+...++++++.|+ ||...|+||++|++.+|+|
T Consensus 201 G~~~Hs~~~~~-~nai~~l~~~i~~l~~~~~~~~~~~~~~~---~~~~~~~~t~~v~~i~-gG~~~nvIP~~a~~~~diR 275 (400)
T TIGR01880 201 GNPGHGSKLME-NTAMEKLEKSVESIRRFRESQFQLLQSNP---DLAIGDVTSVNLTKLK-GGVQSNVIPSEAEAGFDIR 275 (400)
T ss_pred cCCCCCCCCCC-CCHHHHHHHHHHHHHHhhHHHHHHHhcCc---cccccccceeecceec-cCCcCCcCCCccEEEEEEe
Confidence 99999998654 699999999999887642110 11000 1111124789999999 9999999999999999999
Q ss_pred eCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCC-cccCCCCCHHHHHHHHHHHHHh
Q 024487 153 LTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATN-GVACNLDSRGFHVLCKATEEVV 231 (267)
Q Consensus 153 ~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~v~~l~~a~~~~~ 231 (267)
+.|.++.+++.++|++.+++... +.+++++.....+ +...+.+++++++++++++++.
T Consensus 276 ~~p~~~~~~~~~~i~~~i~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~~ 334 (400)
T TIGR01880 276 LAPSVDFEEMENRLDEWCADAGE---------------------GVTYEFSQHSGKPLVTPHDDSNPWWVAFKDAVKEMG 334 (400)
T ss_pred eCCCCCHHHHHHHHHHHHhccCC---------------------ceEEEEeecCCCCCCCCCCCCCHHHHHHHHHHHHcC
Confidence 99999999999999988875311 2344444323233 3345678999999999999853
Q ss_pred CCCCccccCCCcchHHHHHHhcc---eeeecC
Q 024487 232 GHVNPYSITGTLPLIRELQVRYM---LFSMSD 260 (267)
Q Consensus 232 g~~~~~~~~g~~~~~~~~~~~g~---~f~~~~ 260 (267)
....+...+|++ +++++.+.|+ .|+|+.
T Consensus 335 ~~~~~~~~~g~t-Da~~~~~~gip~v~fgp~~ 365 (400)
T TIGR01880 335 CTFKPEILPGST-DSRYIRAAGVPALGFSPMN 365 (400)
T ss_pred CeecceeecCcc-hHHHHHhCCCCeEEECCcc
Confidence 333345555665 7888887654 577764
No 29
>PLN02280 IAA-amino acid hydrolase
Probab=99.94 E-value=7.9e-25 Score=202.44 Aligned_cols=220 Identities=19% Similarity=0.262 Sum_probs=162.6
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCe--------eeeecceEEEEEE
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQP--------CIGTGGMIPWKLH 73 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i--------~~g~~G~~~~~i~ 73 (267)
++|++.+.+++++|+|+|++|||+| .|+++|++++.+++ +|+++..|.+...+ ....+|..+++|+
T Consensus 199 ~~L~~~~~~~~g~V~~if~pdEE~g----~Ga~~li~~g~~~~--~d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~ 272 (478)
T PLN02280 199 KILKSREHLLKGTVVLLFQPAEEAG----NGAKRMIGDGALDD--VEAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAV 272 (478)
T ss_pred HHHHhccccCCceEEEEeccccccc----chHHHHHHCCCCcC--CCEEEEEecCCCCCCceeEecccccccceeEEEEE
Confidence 4567777778999999999999986 59999999987765 47788776543211 2345699999999
Q ss_pred EEecCCCcCCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEe
Q 024487 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (267)
Q Consensus 74 v~G~~~Hss~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~ 153 (267)
++|+++|++.|+.|+||+..|++++..++++..+...+ ....+++++.|+ ||...|+||++|++.+|+|+
T Consensus 273 v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~~~~---------~~~~tvnvg~I~-GG~~~NvIPd~~~l~~diR~ 342 (478)
T PLN02280 273 ISGKKGRAGSPHHSVDLILAASAAVISLQGIVSREANP---------LDSQVVSVTTMD-GGNNLDMIPDTVVLGGTFRA 342 (478)
T ss_pred EECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcccCC---------CCCcEEEEEEEE-ccCCCCEeCCEEEEEEEEec
Confidence 99999999999999999999999999998864322221 124688999999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEec----ccCCcccCCCCCHHHHHHHHHHHH
Q 024487 154 TPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFD----EATNGVACNLDSRGFHVLCKATEE 229 (267)
Q Consensus 154 ~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~v~~l~~a~~~ 229 (267)
.|+++.+++.++|++.++..... +++++++++. ..+|+..+ +.++++.+.+++.+
T Consensus 343 ~~~e~~e~l~~~I~~~~~~~a~~-------------------~g~~~~v~~~~~~~~~~pp~~n--~~~l~~~~~~~a~~ 401 (478)
T PLN02280 343 FSNTSFYQLLKRIQEVIVEQAGV-------------------FRCSATVDFFEKQNTIYPPTVN--NDAMYEHVRKVAID 401 (478)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-------------------hCCeEEEEEeccccCCCCCccC--CHHHHHHHHHHHHH
Confidence 99888888888888888775432 1444555542 22555433 55789999998888
Q ss_pred HhCCCC--c-cccCCCcchHHHHHH--hcceeeec
Q 024487 230 VVGHVN--P-YSITGTLPLIRELQV--RYMLFSMS 259 (267)
Q Consensus 230 ~~g~~~--~-~~~~g~~~~~~~~~~--~g~~f~~~ 259 (267)
++|... . ....|++ ++.++++ -++.|.+|
T Consensus 402 ~~G~~~~~~~~~~~g~t-D~~~~~~~vP~i~~glG 435 (478)
T PLN02280 402 LLGPANFTVVPPMMGAE-DFSFYSQVVPAAFYYIG 435 (478)
T ss_pred hcCccccccCCCCeeec-hHHHHHhhCCEEEEEEe
Confidence 777532 2 2345566 4455543 34445433
No 30
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.94 E-value=1.1e-24 Score=195.12 Aligned_cols=210 Identities=20% Similarity=0.229 Sum_probs=161.2
Q ss_pred CCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEEEecCCCcCCCCCCCC
Q 024487 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAIN 89 (267)
Q Consensus 10 ~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v~G~~~Hss~p~~g~n 89 (267)
+++++|.++|++|||+++.. .|+..++++. ...+++|++++.||+.+.+.++++|..+++|+++|+++|||.|+.|+|
T Consensus 112 ~~~~~i~~~~~~~EE~~~~~-~G~~~~~~~~-~~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~n 189 (352)
T PRK13007 112 EPAHDLTLVFYDCEEVEAEA-NGLGRLAREH-PEWLAGDFAILLEPTDGVIEAGCQGTLRVTVTFHGRRAHSARSWLGEN 189 (352)
T ss_pred ccCCCeEEEEEecccccCCc-ccHHHHHHhc-ccccCCCEEEEecCCCCceEeeccceEEEEEEEEecccccCCCccCcC
Confidence 47899999999999986421 3888988753 223467999999998888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHH
Q 024487 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (267)
Q Consensus 90 ai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~ 169 (267)
|+..+++++..++++........ +.....+++++.|+ ||...|+||++|++.+|+|++|+++.+++.++|++.
T Consensus 190 Ai~~~~~~i~~l~~~~~~~~~~~------~~~~~~~~~~~~i~-gG~~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~ 262 (352)
T PRK13007 190 AIHKAAPVLARLAAYEPREVVVD------GLTYREGLNAVRIS-GGVAGNVIPDECVVNVNYRFAPDRSLEEALAHVREV 262 (352)
T ss_pred HHHHHHHHHHHHHHhcccccccC------CCCccceeEeEeEe-cCCcCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHH
Confidence 99999999999987532211110 11123578999999 999999999999999999999999999999998877
Q ss_pred HHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCccccCCCcchHHHH
Q 024487 170 VDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIREL 249 (267)
Q Consensus 170 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~g~~~~~~~~ 249 (267)
+... . ++++....+++..+.++++++.+.++ +|..+. ...|++ ++.++
T Consensus 263 ~~~~-----------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~-~~~g~t-d~~~~ 310 (352)
T PRK13007 263 FDGF-----------------------A---EVEVTDLAPGARPGLDHPAAAALVAA----VGGEVR-AKYGWT-DVARF 310 (352)
T ss_pred hccc-----------------------c---EEEeecccCCCCCCCCCHHHHHHHHH----hCCCCc-cccccc-hHHHH
Confidence 6531 1 33433445667777899999999886 344322 234444 56777
Q ss_pred HHhcc---eeeecC
Q 024487 250 QVRYM---LFSMSD 260 (267)
Q Consensus 250 ~~~g~---~f~~~~ 260 (267)
...|+ .|.|+.
T Consensus 311 ~~~Gip~v~~Gpg~ 324 (352)
T PRK13007 311 SALGIPAVNFGPGD 324 (352)
T ss_pred HhCCCCEEEeCCCc
Confidence 77776 566654
No 31
>PRK09104 hypothetical protein; Validated
Probab=99.94 E-value=1.2e-24 Score=201.61 Aligned_cols=233 Identities=17% Similarity=0.171 Sum_probs=170.7
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCC-----CeeeeecceEEEEEEEEe
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~-----~i~~g~~G~~~~~i~v~G 76 (267)
+.|++.+..++++|.|+|++|||+|+ .|+..++.+.. +.+++|++|+.|++.. .+.++++|.++++|+++|
T Consensus 141 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~iv~E~~~~~~~~~~i~~~~kG~~~~~l~v~g 216 (464)
T PRK09104 141 RAWKAVTGSLPVRVTILFEGEEESGS---PSLVPFLEANA-EELKADVALVCDTGMWDRETPAITTSLRGLVGEEVTITA 216 (464)
T ss_pred HHHHHhcCCCCCcEEEEEECccccCC---ccHHHHHHhhH-HhcCCCEEEEeCCCCCCCCCeEEEeecCCeEEEEEEEEe
Confidence 45677666788899999999999998 68888887532 2346799999997642 478899999999999999
Q ss_pred --cCCCcCC-CCCCCCHHHHHHHHHHHHHHhhcc--------CCCCCCc-------c---ccCCC---------------
Q 024487 77 --KLFHSGL-PHKAINPLELAMEALKVIQTRFYK--------DFPPHPK-------E---QVYGF--------------- 120 (267)
Q Consensus 77 --~~~Hss~-p~~g~nai~~~~~~i~~l~~~~~~--------~~~~~~~-------~---~~~~~--------------- 120 (267)
+++|||. |+.|.||+..|++++..|++.... .+.+... . ....|
T Consensus 217 ~~~~~Hss~~~~~g~nai~~~~~~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (464)
T PRK09104 217 ADRDLHSGLFGGAAANPIRVLTRILAGLHDETGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGR 296 (464)
T ss_pred CCCCccccccCCccCCHHHHHHHHHHhccCCCCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccH
Confidence 6899996 578999999999999998753100 0000000 0 00000
Q ss_pred ------CCCCeeeeEEEecCCC----ccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCccccc
Q 024487 121 ------ETPSTMKPTQWSYPGG----GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYV 190 (267)
Q Consensus 121 ------~~~~t~~~~~i~~gg~----~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 190 (267)
...++++++.|+ +|. ..|+||++|++.+|+|+.|+++.+++.+.|++.+++...
T Consensus 297 ~~~~~~~~~~t~~i~~i~-gg~~~~~~~nvvP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~~~--------------- 360 (464)
T PRK09104 297 SVLEQIWSRPTCEINGIW-GGYTGEGFKTVIPAEASAKVSFRLVGGQDPAKIREAFRAYVRARLP--------------- 360 (464)
T ss_pred HHHHHHhhCCeEEEeccc-cCCCCCCCccEecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCC---------------
Confidence 113678999998 774 469999999999999999999999999999999875311
Q ss_pred CCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCcc-ccCCCcchHHHHHH-hcce---eeec
Q 024487 191 LPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPY-SITGTLPLIRELQV-RYML---FSMS 259 (267)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~~-~~~g~~~~~~~~~~-~g~~---f~~~ 259 (267)
...++++......|++.+++++++++.+.+++++++|.++.. ..+|+.+++..+.. .|++ |.++
T Consensus 361 -----~~~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gip~v~~g~G 429 (464)
T PRK09104 361 -----ADCSVEFHDHGGSPAIALPYDSPALAAAKAALSDEWGKPAVLIGSGGSIPIVGDFKRILGMDSLLVGFG 429 (464)
T ss_pred -----CCeEEEEEecCCCCceECCCCCHHHHHHHHHHHHHhCCCceecCCCCcHHHHHHHHHHhCCCEEEecCC
Confidence 123455544455788889999999999999999999875443 44455555555554 5654 5554
No 32
>PRK07907 hypothetical protein; Provisional
Probab=99.93 E-value=1.6e-24 Score=200.13 Aligned_cols=230 Identities=15% Similarity=0.145 Sum_probs=170.1
Q ss_pred cCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCC-----CeeeeecceEEEEEEEE--ecCCC
Q 024487 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVT--GKLFH 80 (267)
Q Consensus 8 ~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~-----~i~~g~~G~~~~~i~v~--G~~~H 80 (267)
+..++++|.|++++|||+|+ .|+++++++. .+.+++|++++.|++.. .+.+++||..+++++++ |+++|
T Consensus 140 ~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~-~~~~~~d~~iv~E~~~~~~~~p~i~~~~kG~~~~~l~v~~~G~~~H 215 (449)
T PRK07907 140 GGDLPVGVTVFVEGEEEMGS---PSLERLLAEH-PDLLAADVIVIADSGNWSVGVPALTTSLRGNADVVVTVRTLEHAVH 215 (449)
T ss_pred ccCCCCcEEEEEEcCcccCC---ccHHHHHHhc-hHhhcCCEEEEecCCcCCCCCeEEEEecCCcEEEEEEEEECCCCCC
Confidence 34567899999999999998 7999999763 12356799999998764 36789999999999999 89999
Q ss_pred cCCC-CCCCCHHHHHHHHHHHHHHhhcc----CCCCCCccccCC-----C----------------------CCCCeeee
Q 024487 81 SGLP-HKAINPLELAMEALKVIQTRFYK----DFPPHPKEQVYG-----F----------------------ETPSTMKP 128 (267)
Q Consensus 81 ss~p-~~g~nai~~~~~~i~~l~~~~~~----~~~~~~~~~~~~-----~----------------------~~~~t~~~ 128 (267)
||.| ..+.||+..|++++..|.+...+ .+.......... | ...+++++
T Consensus 216 ss~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i 295 (449)
T PRK07907 216 SGQFGGAAPDALTALVRLLATLHDEDGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITV 295 (449)
T ss_pred CccccccCCCHHHHHHHHHHhhCCCCCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEE
Confidence 9975 56889999999999998764110 000000000000 0 12468889
Q ss_pred EEEec--CCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecc
Q 024487 129 TQWSY--PGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE 206 (267)
Q Consensus 129 ~~i~~--gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (267)
+.|+. +|...|+||++|++.+|+|+.|+++.+++.+.|++++++... ++.++++++..
T Consensus 296 ~~i~~~~~g~~~nvIP~~a~~~~diR~~p~~~~e~v~~~l~~~l~~~~~--------------------~~~~~~~~~~~ 355 (449)
T PRK07907 296 IGIDAPPVAGASNALPPSARARLSLRVAPGQDAAEAQDALVAHLEAHAP--------------------WGAHVTVERGD 355 (449)
T ss_pred EeeecCCCCCCCCEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcCC--------------------CCcEEEEEECC
Confidence 88882 246789999999999999999999999999999999876311 13455666555
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHhCCCCc-cccCCCcchHHHHHHh--c---ceeeecCC
Q 024487 207 ATNGVACNLDSRGFHVLCKATEEVVGHVNP-YSITGTLPLIRELQVR--Y---MLFSMSDV 261 (267)
Q Consensus 207 ~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~-~~~~g~~~~~~~~~~~--g---~~f~~~~~ 261 (267)
..+|+.++.++++++.+++++++++|.++. ..++|+.+....+.+. + ++|.|+++
T Consensus 356 ~~~p~~~~~~~~~~~~l~~a~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~Gpg~~ 416 (449)
T PRK07907 356 AGQPFAADASGPAYDAARAAMREAWGKDPVDMGMGGSIPFIAELQEAFPQAEILVTGVEDP 416 (449)
T ss_pred CcCceeCCCCCHHHHHHHHHHHHHhCCCceecCCCCcHHHHHHHHHhcCCCcEEEeccCCC
Confidence 678888999999999999999999998544 4555655554545432 2 46788754
No 33
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.93 E-value=9.7e-25 Score=199.44 Aligned_cols=221 Identities=20% Similarity=0.179 Sum_probs=164.6
Q ss_pred hhhhcccCCCCccEEEEEEeccccC----CCCcccHHHHHHccc----------c-----------CcCCCCcEEEecCC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENS----AITGVGVDALVKDGL----------L-----------NKLKGGPLYWIDTA 56 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g----~~~~~Ga~~l~~~~~----------~-----------~~~~~d~~i~~e~~ 56 (267)
+.|++.+..++++|.|++++|||++ +. .|+++++.... . .++.+|++++.||+
T Consensus 106 ~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~--~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~ 183 (412)
T PRK12892 106 RALNEHGIATRHPLDVVAWCDEEGSRFTPGF--LGSRAYAGRLDPADALAARCRSDGVPLRDALAAAGLAGRPRPAADRA 183 (412)
T ss_pred HHHHHcCCCCCCCeEEEEecCcccccccCcc--ccHHHHHcCCCHHHHHhCccCCCCcCHHHHHHHcCCChhhccccccc
Confidence 5678888889999999999999984 31 58988884210 0 02334566666654
Q ss_pred C---------------------CCeeeeecceEEEEEEEEecCCCcCC-CC-CCCCHHHHHHHHHHHHHHhhccCCCCCC
Q 024487 57 D---------------------KQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHP 113 (267)
Q Consensus 57 ~---------------------~~i~~g~~G~~~~~i~v~G~~~Hss~-p~-~g~nai~~~~~~i~~l~~~~~~~~~~~~ 113 (267)
. ..+.++++|..+++|+++|+++|++. |+ .|.||+..|++++..|+++.....
T Consensus 184 ~~~~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~~~~i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~~~~~---- 259 (412)
T PRK12892 184 RPKGYLEAHIEQGPVLEQAGLPVGVVTGIVGIWQYRITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHFPRVC---- 259 (412)
T ss_pred CccEEEEEEeccCHhHhhCCCcEEEEEEeccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcC----
Confidence 2 24778999999999999999999875 65 679999999999999988542211
Q ss_pred ccccCCCCCCCeeeeEEEecCC-CccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCC
Q 024487 114 KEQVYGFETPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP 192 (267)
Q Consensus 114 ~~~~~~~~~~~t~~~~~i~~gg-~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 192 (267)
.+.+++++.|+ +| ...|+||++|++.+|+|+.|+++.+++.++|++.++.....
T Consensus 260 --------~~~~~~vg~i~-gg~~~~NvIP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~---------------- 314 (412)
T PRK12892 260 --------GPAVVTVGRVA-LDPGSPSIIPGRVEFSFDARHPSPPVLQRLVALLEALCREIARR---------------- 314 (412)
T ss_pred --------CCcEEEEEEEE-ecCCCCeEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 14689999999 65 79999999999999999999999999999999888876432
Q ss_pred CCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCC-ccccCCCcchHHHHHHh---cceeeecC
Q 024487 193 DENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIRELQVR---YMLFSMSD 260 (267)
Q Consensus 193 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~-~~~~~g~~~~~~~~~~~---g~~f~~~~ 260 (267)
++.++++.....++++. .++++++.+.+++++ +|..+ ....+|++ +++++.+. .+.|.|+.
T Consensus 315 ---~~~~~e~~~~~~~~~~~--~d~~lv~~~~~a~~~-~g~~~~~~~~~g~t-Da~~~~~~ip~~~~~gp~~ 379 (412)
T PRK12892 315 ---RGCRVSVDRIAEYAPAP--CDAALVDALRAAAEA-AGGPYLEMPSGAGH-DAQNMARIAPSAMLFVPSK 379 (412)
T ss_pred ---hCCeEEEEEEecCCCcC--CCHHHHHHHHHHHHH-cCCCccccCcchHH-HHHHHHhHCCEEEEEeccC
Confidence 13455555444566653 457899999999998 67643 34555555 56666653 45677764
No 34
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.93 E-value=8.2e-25 Score=196.55 Aligned_cols=214 Identities=15% Similarity=0.182 Sum_probs=167.1
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCC--CCeeeeecceEEEEEEEEecCC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~--~~i~~g~~G~~~~~i~v~G~~~ 79 (267)
+.|++.+ .++++|+|+|++|||.|+ .|++.+++.+ +.+|+++..+++. +.++.+++|..+++|+++|+++
T Consensus 113 ~~l~~~~-~~~~~v~~~~~~~EE~g~---~G~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~g~~~~~i~~~G~~~ 184 (361)
T TIGR01883 113 DVLSTEE-TPHGTIEFIFTVKEELGL---IGMRLFDESK----ITAAYGYCLDAPGEVGNIQLAAPTQVKVDATIAGKDA 184 (361)
T ss_pred HHHHhcC-CCCCCEEEEEEcccccCc---hhHhHhChhh----cCcceeEEEeCCCCcceEEecCCceEEEEEEEEeeec
Confidence 3455554 467899999999999987 7999887543 3457888887643 5688899999999999999999
Q ss_pred CcC-CCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCC
Q 024487 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (267)
Q Consensus 80 Hss-~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~ 158 (267)
|++ .|+.|+||+..+++++..|+.. ... ...+++++.++ +|...|+||++|++.+|+|..|..+
T Consensus 185 Ha~~~p~~g~nAi~~~~~~i~~l~~~---~~~-----------~~~~~~i~~i~-gG~~~nvVP~~~~~~~diR~~~~~~ 249 (361)
T TIGR01883 185 HAGLVPEDGISAISVARMAIHAMRLG---RID-----------EETTANIGSFS-GGVNTNIVQDEQLIVAEARSLSFRK 249 (361)
T ss_pred CCCCCcccCcCHHHHHHHHHHhcccc---CCC-----------Cccccccceee-cCCccCccCCceEEEEEEecCCHHH
Confidence 985 7999999999999999887542 111 13568899999 9999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCC-cc
Q 024487 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PY 237 (267)
Q Consensus 159 ~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~-~~ 237 (267)
.+++++++++.++..... ++.++++++...++++.++.++++++++++++++ +|.++ ..
T Consensus 250 ~~~~~~~i~~~i~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~lv~~l~~a~~~-~g~~~~~~ 309 (361)
T TIGR01883 250 AEAQVQTMRERFEQAAEK-------------------YGATLEEETRLIYEGFKIHPQHPLMNIFKKAAKK-IGLKTSEI 309 (361)
T ss_pred HHHHHHHHHHHHHHHHHH-------------------cCCEEEEEEEeccccccCCCCCHHHHHHHHHHHH-cCCCcEEE
Confidence 788888888888765443 1345555555557888888899999999999988 57644 34
Q ss_pred ccCCCcchHHHHHHhcceeeec
Q 024487 238 SITGTLPLIRELQVRYMLFSMS 259 (267)
Q Consensus 238 ~~~g~~~~~~~~~~~g~~f~~~ 259 (267)
.++|++ ++.++...|++.+.=
T Consensus 310 ~~~g~t-D~~~~~~~giP~v~~ 330 (361)
T TIGR01883 310 FSGGGS-DANVLNEKGVPTVNL 330 (361)
T ss_pred ecCccc-HHHHHhhCCCceEEE
Confidence 555666 777777777766653
No 35
>PLN02693 IAA-amino acid hydrolase
Probab=99.93 E-value=7.6e-24 Score=194.41 Aligned_cols=211 Identities=18% Similarity=0.259 Sum_probs=151.0
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCC----CCeee----eecceEEEEEE
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD----KQPCI----GTGGMIPWKLH 73 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~----~~i~~----g~~G~~~~~i~ 73 (267)
++|++.+..++++|+|+|++|||+ + .|++.+++++.+++ .|+++..+..+ +.+.. .++|..+++|+
T Consensus 149 ~~L~~~~~~~~g~V~~if~pdEE~-~---~Ga~~~i~~g~~~~--~~~iig~h~~p~~~~g~~~~~~g~~~~G~~~~~i~ 222 (437)
T PLN02693 149 KILQEHRHHLQGTVVLIFQPAEEG-L---SGAKKMREEGALKN--VEAIFGIHLSPRTPFGKAASRAGSFMAGAGVFEAV 222 (437)
T ss_pred HHHHhCcccCCceEEEEEEEcccc-h---hhHHHHHHCCCCCC--CCEEEEEecCCCCCCeeEEeccCcccccceEEEEE
Confidence 567777667789999999999994 3 58999999886653 35555444322 22322 25788999999
Q ss_pred EEecCCCcCCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEe
Q 024487 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (267)
Q Consensus 74 v~G~~~Hss~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~ 153 (267)
++|+++|+|.|+.|+|||..+++++..|+++..+...+ ..+.+++++.|+ ||...|+||++|++.+|+|+
T Consensus 223 v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~~~---------~~~~ti~vg~i~-GG~~~NvVPd~a~~~~diR~ 292 (437)
T PLN02693 223 ITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDP---------LDSKVVTVSKVN-GGNAFNVIPDSITIGGTLRA 292 (437)
T ss_pred EEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccCCC---------CCCcEEEEEEEE-cCCCCceECCeEEEEEEEec
Confidence 99999999999999999999999999998864322221 135789999999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecc-cCCcc-cCCCCCHHHHHHHHHHHHHh
Q 024487 154 TPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGV-ACNLDSRGFHVLCKATEEVV 231 (267)
Q Consensus 154 ~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~-~~~~~~~~v~~l~~a~~~~~ 231 (267)
.|+ .+++.++|++.++..... +++++++++.. .+|+. .+..+.++++.+.+++++++
T Consensus 293 ~~~--~~~i~~~i~~i~~~~a~~-------------------~g~~~e~~~~~~~~~~~~~~~nd~~l~~~~~~~~~~~~ 351 (437)
T PLN02693 293 FTG--FTQLQQRIKEIITKQAAV-------------------HRCNASVNLTPNGREPMPPTVNNMDLYKQFKKVVRDLL 351 (437)
T ss_pred CCH--HHHHHHHHHHHHHHHHHH-------------------hCCcEEEEEeecCccCCCCccCCHHHHHHHHHHHHHhc
Confidence 985 346667777666654322 13444555432 23332 24445579999999999988
Q ss_pred CCCCc---cccCCCcchHHHHH
Q 024487 232 GHVNP---YSITGTLPLIRELQ 250 (267)
Q Consensus 232 g~~~~---~~~~g~~~~~~~~~ 250 (267)
|..+. ....|+. +++++.
T Consensus 352 G~~~~~~~~~~~gse-Df~~~~ 372 (437)
T PLN02693 352 GQEAFVEAAPEMGSE-DFSYFA 372 (437)
T ss_pred CCcceeecCCCceec-hHHHHH
Confidence 87432 2334555 444443
No 36
>PRK07906 hypothetical protein; Provisional
Probab=99.93 E-value=2.3e-24 Score=197.86 Aligned_cols=226 Identities=18% Similarity=0.197 Sum_probs=160.5
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCC-----------CeeeeecceEEE
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----------QPCIGTGGMIPW 70 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~-----------~i~~g~~G~~~~ 70 (267)
+.|++.+..++++|.|+|++|||+++. .|++++++++. +.+....+++.|++.. .+.++++|..++
T Consensus 118 ~~l~~~~~~~~~~i~~~~~~dEE~g~~--~g~~~l~~~~~-~~~~~~~~ii~e~~~~~~~~~~~~~~~~i~~~~kG~~~~ 194 (426)
T PRK07906 118 RHLARTGRRPPRDLVFAFVADEEAGGT--YGAHWLVDNHP-ELFEGVTEAISEVGGFSLTVPGRDRLYLIETAEKGLAWM 194 (426)
T ss_pred HHHHHcCCCCCccEEEEEecCcccchh--hhHHHHHHHHH-HhccchheEEECCCceeeccCCCccEEEEEeccceEEEE
Confidence 467777888899999999999999762 59999987541 1122112445665431 367899999999
Q ss_pred EEEEEecCCCcCCCCCCCCHHHHHHHHHHHHHHhhccC------------CC--------CCCcc----------ccCCC
Q 024487 71 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD------------FP--------PHPKE----------QVYGF 120 (267)
Q Consensus 71 ~i~v~G~~~Hss~p~~g~nai~~~~~~i~~l~~~~~~~------------~~--------~~~~~----------~~~~~ 120 (267)
+|+++|+++|+|.|+. .||+..|++++..|++..... +. +.+.. .....
T Consensus 195 ~v~v~G~~~Hss~p~~-~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 273 (426)
T PRK07906 195 RLTARGRAGHGSMVND-DNAVTRLAEAVARIGRHRWPLVLTPTVRAFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGA 273 (426)
T ss_pred EEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhh
Confidence 9999999999999875 899999999999987531100 00 00000 00000
Q ss_pred CCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEE
Q 024487 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSL 200 (267)
Q Consensus 121 ~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (267)
...++++++.|+ ||...|+||++|++.+|+|+.|+++ +++.+.|++.+. .++
T Consensus 274 ~~~~t~~~~~i~-gG~~~NviP~~~~~~~d~R~~p~~~-~~i~~~i~~~~~--------------------------~~v 325 (426)
T PRK07906 274 TLRNTANPTMLK-AGYKVNVIPGTAEAVVDGRFLPGRE-EEFLATVDELLG--------------------------PDV 325 (426)
T ss_pred hhcccccceeEe-ccCccccCCCceEEEEEEeECCCCc-HHHHHHHHHHhC--------------------------CCe
Confidence 113689999999 9999999999999999999999876 455554444331 123
Q ss_pred EEEecccCCcccCCCCCHHHHHHHHHHHHHhCC--CCccccCCCcchHHHHHHh---cceeeecC
Q 024487 201 TLTFDEATNGVACNLDSRGFHVLCKATEEVVGH--VNPYSITGTLPLIRELQVR---YMLFSMSD 260 (267)
Q Consensus 201 ~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~--~~~~~~~g~~~~~~~~~~~---g~~f~~~~ 260 (267)
++++....+++.++.++++++.++++++++++. +.+..++|++ +++.+... .+.|.|+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~l~~a~~~~~~~~~~~~~~~~ggt-Da~~~~~~g~p~~~~gp~~ 389 (426)
T PRK07906 326 EREWVHRDPALETPFDGPLVDAMNAALLAEDPGARVVPYMLSGGT-DAKAFSRLGIRCYGFAPLR 389 (426)
T ss_pred EEEEecCCCCCCCCCCcHHHHHHHHHHHHHCCCCeEeeeeecccC-cHHHHHhcCCceEEEeccc
Confidence 455555678888899999999999999987633 3345566666 57888775 46788865
No 37
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.93 E-value=4e-24 Score=195.49 Aligned_cols=214 Identities=17% Similarity=0.156 Sum_probs=156.8
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCC--CcccHHHHHHccc--------------------cCcCCCCcEEEe--cCCC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAI--TGVGVDALVKDGL--------------------LNKLKGGPLYWI--DTAD 57 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~--~~~Ga~~l~~~~~--------------------~~~~~~d~~i~~--e~~~ 57 (267)
+.|++.+.+++++|.|+|++|||.|+- ...|++.+++... ..++++|+++++ ||+.
T Consensus 105 ~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ept~ 184 (413)
T PRK09290 105 RTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGALTPEDALALRDADGVSFAEALAAIGYDGDEAVGAARARRD 184 (413)
T ss_pred HHHHHcCCCCCCCeEEEEEcCCccccccCccccHHHHHcccCHHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCC
Confidence 567777878899999999999998410 0157877763211 113556776654 4442
Q ss_pred ---------------------CCeeeeecceEEEEEEEEecCCCcC-CC-CCCCCHHHHHHHHHHHHHHhhccCCCCCCc
Q 024487 58 ---------------------KQPCIGTGGMIPWKLHVTGKLFHSG-LP-HKAINPLELAMEALKVIQTRFYKDFPPHPK 114 (267)
Q Consensus 58 ---------------------~~i~~g~~G~~~~~i~v~G~~~Hss-~p-~~g~nai~~~~~~i~~l~~~~~~~~~~~~~ 114 (267)
..+..+++|..|++|+++|+++|++ .| +.|+|||..+++++..|+++..+. .
T Consensus 185 ~~~~~~~~~~~~~~~e~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~-~---- 259 (413)
T PRK09290 185 IKAFVELHIEQGPVLEAEGLPIGVVTGIVGQRRYRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAAH-G---- 259 (413)
T ss_pred ccEEEEEEeccCHHHHHCCCcEEEEeeeeccEEEEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHhc-C----
Confidence 2477899999999999999999988 68 578999999999999998753221 1
Q ss_pred cccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCC
Q 024487 115 EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDE 194 (267)
Q Consensus 115 ~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 194 (267)
.+.+++++.++.++...|+||++|++.+|+|+.|+++.+++.++|++.++.....
T Consensus 260 -------~~~~~~~g~i~~g~~~~NvIP~~a~~~~diR~~p~e~~e~v~~~i~~~~~~~~~~------------------ 314 (413)
T PRK09290 260 -------PDLVATVGRLEVKPNSVNVIPGEVTFTLDIRHPDDAVLDALVAELRAAAEAIAAR------------------ 314 (413)
T ss_pred -------CCeEEEEEEEEEcCCCCeEECCEEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 1357899999833478999999999999999999999999999999988876432
Q ss_pred CcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCC-ccccCCCcchHHHHH
Q 024487 195 NIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIRELQ 250 (267)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~-~~~~~g~~~~~~~~~ 250 (267)
.+.+++++....+|++. .++++++.+.+++++. |..+ ...++|++ +++.+.
T Consensus 315 -~~~~~e~~~~~~~~~~~--~d~~lv~~l~~a~~~~-g~~~~~~~~~g~t-Da~~~~ 366 (413)
T PRK09290 315 -RGVEVEIELISRRPPVP--FDPGLVAALEEAAERL-GLSYRRLPSGAGH-DAQILA 366 (413)
T ss_pred -cCCeEEEEEEecCCCcc--CCHHHHHHHHHHHHHc-CCCccccCCccch-HHHHHh
Confidence 13455555444456643 5678999999999775 6533 34555666 455554
No 38
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.93 E-value=3.8e-24 Score=194.89 Aligned_cols=223 Identities=17% Similarity=0.110 Sum_probs=162.0
Q ss_pred ChhhhcccCCCCccEEEEEEecccc-----CCCCcccHHHHHHcc-------ccC--c---------CCCCcEEEecCCC
Q 024487 1 MRKLGETKLKLKSTVIAVFIASEEN-----SAITGVGVDALVKDG-------LLN--K---------LKGGPLYWIDTAD 57 (267)
Q Consensus 1 ~~~L~~~~~~~~~~I~li~~~dEE~-----g~~~~~Ga~~l~~~~-------~~~--~---------~~~d~~i~~e~~~ 57 (267)
++.|++.+.+++++|.|++++|||. +. .|+++++... +.+ + ..+|++++.+++.
T Consensus 98 ~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~---~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 174 (401)
T TIGR01879 98 VDALKEAYVVPLHPIEVVAFTEEEGSRFPYGM---WGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPDLPNQPLRPR 174 (401)
T ss_pred HHHHHHcCCCCCCCeEEEEEeCCcCcCccccc---ccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCCccccccccc
Confidence 3578888989999999999999997 44 6888886422 000 0 1223333222221
Q ss_pred -----------------------CCeeeeecceEEEEEEEEecCCCcCC-CC-CCCCHHHHHHHHHHHHHHhhccCCCCC
Q 024487 58 -----------------------KQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPH 112 (267)
Q Consensus 58 -----------------------~~i~~g~~G~~~~~i~v~G~~~Hss~-p~-~g~nai~~~~~~i~~l~~~~~~~~~~~ 112 (267)
..++.+++|..|++|+++|+++|++. |+ .|+||+..+++++..|+++..+. .
T Consensus 175 ~~~~~~~e~Hieqg~~l~~~g~~~~v~~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~~-~-- 251 (401)
T TIGR01879 175 GDIKAYVELHIEQGPVLESNGQPIGVVNAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKRM-G-- 251 (401)
T ss_pred ccccEEEEEEEcCCcChhhCCCeEEEEEEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-C--
Confidence 24678999999999999999999985 53 57999999999999998864221 1
Q ss_pred CccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCC
Q 024487 113 PKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP 192 (267)
Q Consensus 113 ~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 192 (267)
.+.+.+++.|+.++...|+||++|++.+|+|+.|+++.+++.++|++.++.....
T Consensus 252 ---------~~~~~~vg~i~~g~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~~~~~~~~---------------- 306 (401)
T TIGR01879 252 ---------DPTVGTVGKVEARPNGVNVIPGKVTFTLDLRHTDAAVLRDFTQQLENDIKAISDE---------------- 306 (401)
T ss_pred ---------CCeEEEEEEEEecCCceEEECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 1356789999933467999999999999999999999999999999888876432
Q ss_pred CCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCC-CccccCCCcchHHHHHHh---cceeeecCC
Q 024487 193 DENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIRELQVR---YMLFSMSDV 261 (267)
Q Consensus 193 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~-~~~~~~g~~~~~~~~~~~---g~~f~~~~~ 261 (267)
.+.+++++....+++. +.++++++++.++++++ |.. ....++|++ +++++... +++|+|+..
T Consensus 307 ---~~~~~~~~~~~~~~~~--~~d~~lv~~l~~a~~~~-g~~~~~~~~~ggt-Da~~~~~~~~~~v~fgPg~~ 372 (401)
T TIGR01879 307 ---RDIGIDIERWMDEEPV--PCSEELVAALTELCERL-GYNARVMVSGAGH-DAQILAPIVPIGMIFIPSIN 372 (401)
T ss_pred ---cCceEEEEEeecCCCc--CCCHHHHHHHHHHHHHc-CCCccccccchHH-HHHHHHhhCCEEEEEecCCC
Confidence 1345566554445554 45789999999999875 653 334455555 67777664 567999864
No 39
>PRK09133 hypothetical protein; Provisional
Probab=99.93 E-value=3e-24 Score=199.46 Aligned_cols=221 Identities=19% Similarity=0.144 Sum_probs=161.2
Q ss_pred hhhhcccCCCCccEEEEEEeccc-cCCCCcccHHHHHHccccCcCCCCcEEEecCCC------C-----CeeeeecceEE
Q 024487 2 RKLGETKLKLKSTVIAVFIASEE-NSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD------K-----QPCIGTGGMIP 69 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE-~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~------~-----~i~~g~~G~~~ 69 (267)
+.|++++..++++|+|+|++||| +|+ .|+++++++.. ..+++|++++ |++. + .+..|+||..+
T Consensus 154 ~~l~~~~~~~~~~i~~~~~~dEE~~g~---~G~~~l~~~~~-~~~~~~~~i~-e~~~~~~~~~gept~~~i~~g~kG~~~ 228 (472)
T PRK09133 154 IRLKREGFKPKRDIILALTGDEEGTPM---NGVAWLAENHR-DLIDAEFALN-EGGGGTLDEDGKPVLLTVQAGEKTYAD 228 (472)
T ss_pred HHHHhcCCCCCCCEEEEEECccccCcc---chHHHHHHHHh-hccCeEEEEE-CCCccccCCCCCceEEEeeeecceeEE
Confidence 56777777889999999999999 666 79999997642 2345688888 7654 2 24579999999
Q ss_pred EEEEEEecCCCcCCCCCCCCHHHHHHHHHHHHHHhhccCC-C----------------------------CCCc------
Q 024487 70 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDF-P----------------------------PHPK------ 114 (267)
Q Consensus 70 ~~i~v~G~~~Hss~p~~g~nai~~~~~~i~~l~~~~~~~~-~----------------------------~~~~------ 114 (267)
++|+++|+++|||.|+. .||+..|++++..|+++..... . +.+.
T Consensus 229 ~~i~v~G~~~Hss~p~~-~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (472)
T PRK09133 229 FRLEVTNPGGHSSRPTK-DNAIYRLAAALSRLAAYRFPVMLNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALL 307 (472)
T ss_pred EEEEEecCCCCCCCCCC-CChHHHHHHHHHHHhhCCCCCccCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHH
Confidence 99999999999999974 8999999999999986411100 0 0000
Q ss_pred cccCCC--CCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCC
Q 024487 115 EQVYGF--ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP 192 (267)
Q Consensus 115 ~~~~~~--~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 192 (267)
.....+ ...++++++.|+ +|...|+||++|++.+|+|+.|+++.+++.++|++.+++.
T Consensus 308 ~~~~~~~~~~~~t~~~~~i~-gG~~~NvVP~~a~~~lDiR~~p~~~~e~v~~~I~~~i~~~------------------- 367 (472)
T PRK09133 308 SADPSYNAMLRTTCVATMLE-GGHAENALPQRATANVNCRIFPGDTIEAVRATLKQVVADP------------------- 367 (472)
T ss_pred hcCcchhheeeeeEEeeEEe-cCCcCccCCCceEEEEEEEeCCchhHHHHHHHHHHHhcCC-------------------
Confidence 000001 124689999999 9999999999999999999999999998888888877531
Q ss_pred CCCcceEEEEEeccc-CCcccCCCCCHHHHHHHHHHHHHh-CCCCc-cccCCCcchHHHHHHhcce
Q 024487 193 DENIRGSLTLTFDEA-TNGVACNLDSRGFHVLCKATEEVV-GHVNP-YSITGTLPLIRELQVRYML 255 (267)
Q Consensus 193 ~~~~~~~~~~~~~~~-~p~~~~~~~~~~v~~l~~a~~~~~-g~~~~-~~~~g~~~~~~~~~~~g~~ 255 (267)
+ ++++.... .++..++.+.++++.+++++++++ |.++. ..++|++ +++++...|++
T Consensus 368 ----~--v~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~ggt-Da~~~~~~gip 426 (472)
T PRK09133 368 ----A--IKITRIGDPSPSPASPLRPDIMKAVEKLTAAMWPGVPVIPSMSTGAT-DGRYLRAAGIP 426 (472)
T ss_pred ----C--EEEEEccCCCCCCCCCCCcHHHHHHHHHHHHHCCCCceecccccccc-chHHHHhcCCC
Confidence 1 23333222 334456777899999999999887 54432 3455555 67888776654
No 40
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.93 E-value=4.7e-24 Score=194.98 Aligned_cols=221 Identities=15% Similarity=0.126 Sum_probs=158.8
Q ss_pred hhhhcccCCCCccEEEEEEeccccC-----CCCcccHHHHHHccccC--------------------cCCCC--------
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDALVKDGLLN--------------------KLKGG-------- 48 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g-----~~~~~Ga~~l~~~~~~~--------------------~~~~d-------- 48 (267)
+.|++.+..++++|.|+|++|||++ + .|+.++......+ .+.+|
T Consensus 108 ~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (412)
T PRK12893 108 RTLNDAGIRTRRPIEVVSWTNEEGARFAPAM---LGSGVFTGALPLDDALARRDADGITLGEALARIGYRGTARVGRRAV 184 (412)
T ss_pred HHHHHcCCCCCCCeEEEEEcccccccccccc---ccHHHHhCcCChHHHHhccCCCCCCHHHHHHHcCCCcccccccCCc
Confidence 5678888788999999999999986 4 5888887442210 01111
Q ss_pred -cEEEec----------CCCCCeeeeecceEEEEEEEEecCCCcCC-CC-CCCCHHHHHHHHHHHHHHhhccCCCCCCcc
Q 024487 49 -PLYWID----------TADKQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPKE 115 (267)
Q Consensus 49 -~~i~~e----------~~~~~i~~g~~G~~~~~i~v~G~~~Hss~-p~-~g~nai~~~~~~i~~l~~~~~~~~~~~~~~ 115 (267)
..+..+ +....++++++|..+++|+++|+++|+|. |+ .|+||+..|++++..|+++..+ ..
T Consensus 185 ~~~~~~~~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~~-~~----- 258 (412)
T PRK12893 185 DAYLELHIEQGPVLEAEGLPIGVVTGIQGIRWLEVTVEGQAAHAGTTPMAMRRDALVAAARIILAVERIAAA-LA----- 258 (412)
T ss_pred cEEEEEEeccCHHHHHCCCcEEEEeeecccEEEEEEEEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHHh-cC-----
Confidence 122121 11335778999999999999999999885 74 7999999999999999886422 11
Q ss_pred ccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCC
Q 024487 116 QVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDEN 195 (267)
Q Consensus 116 ~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (267)
...+++++.++.++...|+||++|++.+|+|+.|+++.+++.+.|++.++.....
T Consensus 259 ------~~~~~~vg~i~ggg~~~NvVP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~------------------- 313 (412)
T PRK12893 259 ------PDGVATVGRLRVEPNSRNVIPGKVVFTVDIRHPDDARLDAMEAALRAACAKIAAA------------------- 313 (412)
T ss_pred ------CCceEEEEEEEeeCCCceEECCeeEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 1367899999933579999999999999999999999999999999888876432
Q ss_pred cceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCC-ccccCCCcchHHHHHHh---cceeeecC
Q 024487 196 IRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIRELQVR---YMLFSMSD 260 (267)
Q Consensus 196 ~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~-~~~~~g~~~~~~~~~~~---g~~f~~~~ 260 (267)
++.+++++....+++... ++++++.+++++++ +|..+ ...++|++ +++++.+. .+.|.|+.
T Consensus 314 ~~~~v~~~~~~~~~~~~~--d~~l~~~l~~~~~~-~g~~~~~~~~~g~t-D~~~~~~~~p~~v~~gp~~ 378 (412)
T PRK12893 314 RGVQVTVETVWDFPPVPF--DPALVALVEAAAEA-LGLSHMRMVSGAGH-DAMFLARVAPAAMIFVPCR 378 (412)
T ss_pred cCCeEEEEEEecCCCcCC--CHHHHHHHHHHHHH-cCCCccccCCccHH-HHHHHHhhCCEEEEEeecC
Confidence 134455544344556533 57899999998887 46533 34455556 56666654 35677764
No 41
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.92 E-value=1.1e-23 Score=192.72 Aligned_cols=221 Identities=14% Similarity=0.092 Sum_probs=158.0
Q ss_pred ChhhhcccCCCCccEEEEEEeccccCCC--CcccHHHH------------------------HHccccCcCCCCcEEEec
Q 024487 1 MRKLGETKLKLKSTVIAVFIASEENSAI--TGVGVDAL------------------------VKDGLLNKLKGGPLYWID 54 (267)
Q Consensus 1 ~~~L~~~~~~~~~~I~li~~~dEE~g~~--~~~Ga~~l------------------------~~~~~~~~~~~d~~i~~e 54 (267)
++.|++.+.+++++|.+++++|||.++- ...|+..+ .+.++ ..|++++.+
T Consensus 107 ~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~ 182 (414)
T PRK12891 107 VRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLLSRRDDTGRTLGEHLARIGY----AGAEPVGGY 182 (414)
T ss_pred HHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHHhccCCCCCCHHHHHHHCCC----CcccccccC
Confidence 3678889999999999999999998520 00255433 33332 223333333
Q ss_pred CC-----------------C--CCeeeeecceEEEEEEEEecCCCcC-CCC-CCCCHHHHHHHHHHHHHHhhccCCCCCC
Q 024487 55 TA-----------------D--KQPCIGTGGMIPWKLHVTGKLFHSG-LPH-KAINPLELAMEALKVIQTRFYKDFPPHP 113 (267)
Q Consensus 55 ~~-----------------~--~~i~~g~~G~~~~~i~v~G~~~Hss-~p~-~g~nai~~~~~~i~~l~~~~~~~~~~~~ 113 (267)
+. + ..++++++|..+++|+++|+++|+| .|+ .|.||+..+++++..|+++.... .
T Consensus 183 ~~~~~~e~h~e~g~vle~~~~~~~iv~~~kG~~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~~~-~--- 258 (414)
T PRK12891 183 PVHAAYELHIEQGAILERAGKTIGVVTAGQGQRWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAFLDALGRRD-A--- 258 (414)
T ss_pred CCCEEEEEEeCCCHHHHHCCCcEEEEeeccCcEEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-C---
Confidence 21 1 2477899999999999999999998 676 58999999999999998864321 1
Q ss_pred ccccCCCCCCCeeeeEEEecCC-CccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCC
Q 024487 114 KEQVYGFETPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP 192 (267)
Q Consensus 114 ~~~~~~~~~~~t~~~~~i~~gg-~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 192 (267)
.+.+++++.|+ +| ...|+||++|++.+|+|+.|+++.+++.++|++.++.....
T Consensus 259 --------~~~t~~vg~I~-gG~~~~NvVP~~~~~~~diR~~~~e~~e~v~~~i~~~~~~~~~~---------------- 313 (414)
T PRK12891 259 --------PDARATVGMID-ARPNSRNTVPGECFFTVEFRHPDDAVLDRLDAALRAELARIADE---------------- 313 (414)
T ss_pred --------CCeEEEEEEEE-eeCCCcceECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 14689999999 75 68999999999999999999999999999999888876432
Q ss_pred CCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCC-ccccCCCcchHHHHHH---hcceeeecCC
Q 024487 193 DENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIRELQV---RYMLFSMSDV 261 (267)
Q Consensus 193 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~-~~~~~g~~~~~~~~~~---~g~~f~~~~~ 261 (267)
++.+++++.....|+.. .++++++.++++++. .|.++ ....+|++ ++.++.. .++.|.|+..
T Consensus 314 ---~~~~~~~~~~~~~~~~~--~d~~lv~~l~~a~~~-~G~~~~~~~~~ggt-Da~~~~~giPt~~~~gp~~~ 379 (414)
T PRK12891 314 ---TGLRADIEQIFGYAPAP--FAPGCIDAVRDAARA-LGLSHMDIVSGAGH-DACFAARGAPTGMIFVPCVD 379 (414)
T ss_pred ---hCCEEEEEEEecCCCcC--CCHHHHHHHHHHHHH-cCCCceecCCcchH-HHHHHHhhCCEEEEEEcCCC
Confidence 14555665544566654 456899999999866 57643 34556666 4555543 2355666653
No 42
>PRK07473 carboxypeptidase; Provisional
Probab=99.92 E-value=1.6e-23 Score=189.15 Aligned_cols=207 Identities=12% Similarity=0.071 Sum_probs=152.5
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCC--CCeeeeecceEEEEEEEEecCC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~--~~i~~g~~G~~~~~i~v~G~~~ 79 (267)
++|++.+..++++|.|+|++|||+|+ .|++.+++++.. ++|++|+.||+. +.+..+++|..+++|+++|+++
T Consensus 125 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~g~~~~~~~~~~---~~d~~iv~ep~~~~~~v~~~~~G~~~~~v~~~G~~a 198 (376)
T PRK07473 125 RQLARAGITTPLPITVLFTPDEEVGT---PSTRDLIEAEAA---RNKYVLVPEPGRPDNGVVTGRYAIARFNLEATGRPS 198 (376)
T ss_pred HHHHHcCCCCCCCEEEEEeCCcccCC---ccHHHHHHHhhc---cCCEEEEeCCCCCCCCEEEECeeeEEEEEEEEeEcC
Confidence 46777777777899999999999997 799999986432 468999999985 4789999999999999999999
Q ss_pred CcC-CCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCC
Q 024487 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (267)
Q Consensus 80 Hss-~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~ 158 (267)
|++ .|+.|+||+..|++++..|+++.. . ..+++++.|+ ||...|+||++|++.+++|.....+
T Consensus 199 Hag~~p~~g~nAi~~~~~~i~~l~~~~~---~------------~~~~~vg~i~-gg~~~n~VP~~~~~~~d~r~~~~~~ 262 (376)
T PRK07473 199 HAGATLSEGRSAIREMARQILAIDAMTT---E------------DCTFSVGIVH-GGQWVNCVATTCTGEALSMAKRQAD 262 (376)
T ss_pred CCCCCcccCcCHHHHHHHHHHHHHHhcC---C------------CceEeEeeEE-cCCCCcCCCCceEEEEEEEeCCHhH
Confidence 986 799999999999999999987521 1 2578999999 9999999999999999999876333
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCC-HHHHHHHHHHHHHhCCCCc-
Q 024487 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDS-RGFHVLCKATEEVVGHVNP- 236 (267)
Q Consensus 159 ~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~v~~l~~a~~~~~g~~~~- 236 (267)
.++..+++.+.+. . ..+.+++++.....|+...+.++ ++++.++++.+. +|.++.
T Consensus 263 ~~~~~~~i~~~~~----~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~g~~~~~ 319 (376)
T PRK07473 263 LDRGVARMLALSG----T------------------EDDVTFTVTRGVTRPVWEPDAGTMALYEKARAIAGQ-LGLSLPH 319 (376)
T ss_pred HHHHHHHHHHhhC----c------------------CCCeEEEEEccccCCCCCCChhHHHHHHHHHHHHHH-cCCCCcc
Confidence 3333333322221 1 01344444433345666555554 577777776554 576443
Q ss_pred cccCCCcchHHHHHHhcc
Q 024487 237 YSITGTLPLIRELQVRYM 254 (267)
Q Consensus 237 ~~~~g~~~~~~~~~~~g~ 254 (267)
...+|++ +++++...|+
T Consensus 320 ~~~~g~t-Da~~~~~~gi 336 (376)
T PRK07473 320 GSAGGGS-DGNFTGAMGI 336 (376)
T ss_pred ccCcccc-HhhhHHhcCC
Confidence 3445555 6888877665
No 43
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.92 E-value=1.1e-23 Score=187.49 Aligned_cols=200 Identities=18% Similarity=0.175 Sum_probs=153.2
Q ss_pred CCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCC-CCeeeeecceEEEEEEEEecCCCcCCCCCCCC
Q 024487 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGTGGMIPWKLHVTGKLFHSGLPHKAIN 89 (267)
Q Consensus 11 ~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~-~~i~~g~~G~~~~~i~v~G~~~Hss~p~~g~n 89 (267)
...+|.|+|++|||+|+ .|++++++... .+++++.||+. +.+.++++|..+++|+++|+++|+|.|. |
T Consensus 100 ~~~~i~~~~~~dEE~g~---~G~~~~~~~~~-----~~~~ii~ept~~~~i~~~~kG~~~~~v~~~G~~~Hss~~~---~ 168 (336)
T TIGR01902 100 KGIKVIVSGLVDEESSS---KGAREVIDKNY-----PFYVIVGEPSGAEGITLGYKGSLQLKIMCEGTPFHSSSAG---N 168 (336)
T ss_pred CCCcEEEEEEeCcccCC---ccHHHHHhhcC-----CCEEEEecCCCCcceeeeeeeEEEEEEEEEecCcccCCCh---h
Confidence 34689999999999987 79999997642 35899999987 4688999999999999999999999875 4
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHH
Q 024487 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (267)
Q Consensus 90 ai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~ 169 (267)
|+..|..+++.|.+.+.+... + ...+++++.++ +|...|+||++|++.+|+|+.|+++.+++.+++++
T Consensus 169 ai~~~~~~~~~l~~~~~~~~~---------~-~~~~~~~~~i~-gg~~~nvIP~~a~~~idiR~~p~~~~~~~~~~i~~- 236 (336)
T TIGR01902 169 AAELLIDYSKKIIEVYKQPEN---------Y-DKPSIVPTIIR-FGESYNDTPAKLELHFDLRYPPNNKPEEAIKEITD- 236 (336)
T ss_pred HHHHHHHHHHHHHHHhccccC---------C-CCCcceeEEEE-ccCCCcCCCceEEEEEEEeeCCCCCHHHHHHHHHh-
Confidence 899999999888743322111 1 12467888898 89999999999999999999999999988777765
Q ss_pred HHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCccccCCCcchHHHH
Q 024487 170 VDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIREL 249 (267)
Q Consensus 170 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~g~~~~~~~~ 249 (267)
.. .. ++++....+|+.++++++++++++++++++...+....++|++ +++.+
T Consensus 237 ------~~-------------------~~--~~~~~~~~~p~~~~~~~~lv~~~~~a~~~~~~~~~~~~~~g~t-D~~~~ 288 (336)
T TIGR01902 237 ------KF-------------------PI--CLEIVDETPPYKVSRNNPLVRAFVRAIRKQGMKPRLKKKTGTS-DMNIL 288 (336)
T ss_pred ------cc-------------------Cc--eEEEEeccCceecCCCCHHHHHHHHHHHHcCCCeEEeeccccC-cccee
Confidence 10 12 3344445678888899999999999999864333334556665 55666
Q ss_pred HHh-cc---eeeecCC
Q 024487 250 QVR-YM---LFSMSDV 261 (267)
Q Consensus 250 ~~~-g~---~f~~~~~ 261 (267)
.+. |+ .|+|+..
T Consensus 289 ~~~~g~p~v~~Gpg~~ 304 (336)
T TIGR01902 289 APIWTVPMVAYGPGDS 304 (336)
T ss_pred ccccCCCeEEECCCCc
Confidence 553 43 3888753
No 44
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.92 E-value=2.3e-23 Score=190.22 Aligned_cols=231 Identities=23% Similarity=0.242 Sum_probs=169.7
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHcccc-CcCCCCcEEEecCC-----CCCeeeeecceEEEEEEEE
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLL-NKLKGGPLYWIDTA-----DKQPCIGTGGMIPWKLHVT 75 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~-~~~~~d~~i~~e~~-----~~~i~~g~~G~~~~~i~v~ 75 (267)
+.|.+.+..++++|.++|++|||+++ .|+..++.++.. ..+.+|++++.|++ ...+.++++|..+++|+++
T Consensus 129 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~~~~~~~~~~~~~~~~~~d~~i~~E~~~~~~~~~~~~~~~kG~~~~~v~v~ 205 (409)
T COG0624 129 SALKAAGGELPGDVRLLFTADEESGG---AGGKAYLEEGEEALGIRPDYEIVGEPTLESEGGDIIVVGHKGSLWLEVTVK 205 (409)
T ss_pred HHHHHhCCCCCeEEEEEEEeccccCC---cchHHHHHhcchhhccCCCEEEeCCCCCcccCCCeEEEcceeEEEEEEEEE
Confidence 45666667889999999999999998 677777765421 13578999999983 3356679999999999999
Q ss_pred ecCCCcCC--CCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEec-------CCCccceeCCeeE
Q 024487 76 GKLFHSGL--PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSY-------PGGGINQIPGECT 146 (267)
Q Consensus 76 G~~~Hss~--p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~-------gg~~~n~ip~~a~ 146 (267)
|+++|+|. |+.+.|++..+...+.++.....+...+ .+..+.+++++.+.. +|...|+||++|+
T Consensus 206 G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~ 278 (409)
T COG0624 206 GKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGE-------GFDGPLGLNVGLILAGPGASVNGGDKVNVIPGEAE 278 (409)
T ss_pred eecccccccCCcccccHHHHHHHHHHHHHHHhcccccc-------cccCCccccccccccCCcccccCCccCceecceEE
Confidence 99999998 8899996655555555554432211111 111034555655541 3334699999999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHH
Q 024487 147 VSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKA 226 (267)
Q Consensus 147 ~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a 226 (267)
+.+|+|+.|.++.+++.+++++.++..... .+.++++......++..++.++++++.+.++
T Consensus 279 ~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 339 (409)
T COG0624 279 ATVDIRLLPGEDLDDVLEELEAELRAIAPK-------------------EGVEYEIEPGLGEPPLPVPGDSPLVAALAEA 339 (409)
T ss_pred EEEEEecCCcCCHHHHHHHHHHHHHHhccc-------------------cCceEEeccccCCccccCCCchHHHHHHHHH
Confidence 999999999999999999999999875431 0233333322346777889999999999999
Q ss_pred HHHHhCCCCccccCCCcchHHHHHHhc---ceeeecCC
Q 024487 227 TEEVVGHVNPYSITGTLPLIRELQVRY---MLFSMSDV 261 (267)
Q Consensus 227 ~~~~~g~~~~~~~~g~~~~~~~~~~~g---~~f~~~~~ 261 (267)
+++.+|.++...++|++.++.++...| ++|+|++.
T Consensus 340 ~~~~~g~~~~~~~~G~~~da~~~~~~~~~~~~fgp~~~ 377 (409)
T COG0624 340 AEELLGLPPEVSTGGGTHDARFFARLGIPAVIFGPGDI 377 (409)
T ss_pred HHHhhCCCceecCCCCcchHHHHHhcCCeeEEECCCCc
Confidence 999888775566666666788888888 89999874
No 45
>PRK08262 hypothetical protein; Provisional
Probab=99.92 E-value=1.1e-23 Score=196.38 Aligned_cols=222 Identities=17% Similarity=0.167 Sum_probs=157.7
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEE-----EecC-C--C----CCeeeeecceEE
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLY-----WIDT-A--D----KQPCIGTGGMIP 69 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i-----~~e~-~--~----~~i~~g~~G~~~ 69 (267)
+.|++++.+++++|+|+|++|||+|+ .|++++++.....+.++|+++ +.++ . . +.+.++++|..+
T Consensus 167 ~~l~~~~~~l~~~I~llf~~dEE~g~---~G~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~p~~~i~~~~kG~~~ 243 (486)
T PRK08262 167 EALLAQGFQPRRTIYLAFGHDEEVGG---LGARAIAELLKERGVRLAFVLDEGGAITEGVLPGVKKPVALIGVAEKGYAT 243 (486)
T ss_pred HHHHHcCCCCCCeEEEEEecccccCC---cCHHHHHHHHHHhcCCEEEEEeCCceecccccCCCCceEEeeEEeeeeeEE
Confidence 56777777889999999999999997 699988864211122334432 1221 1 1 245678999999
Q ss_pred EEEEEEecCCCcCCCCCCCCHHHHHHHHHHHHHHhhc------------cCCCCCCc-c---------------------
Q 024487 70 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFY------------KDFPPHPK-E--------------------- 115 (267)
Q Consensus 70 ~~i~v~G~~~Hss~p~~g~nai~~~~~~i~~l~~~~~------------~~~~~~~~-~--------------------- 115 (267)
++|+++|+++|||.|+. .||+..|+++++.|++... +...+... .
T Consensus 244 ~~i~v~G~~~Hss~p~~-~nai~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (486)
T PRK08262 244 LELTARATGGHSSMPPR-QTAIGRLARALTRLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAK 322 (486)
T ss_pred EEEEEecCCCCCCCCCC-CCHHHHHHHHHHHHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhc
Confidence 99999999999999999 9999999999999986310 00000000 0
Q ss_pred -ccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCC
Q 024487 116 -QVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDE 194 (267)
Q Consensus 116 -~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 194 (267)
........+|++++.|+ ||...|+||++|++.+|+|+.|+++.+++.++|++.+++.
T Consensus 323 ~~~~~~~~~~t~~i~~I~-gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~--------------------- 380 (486)
T PRK08262 323 SPETAAMLRTTTAPTMLK-GSPKDNVLPQRATATVNFRILPGDSVESVLAHVRRAVADD--------------------- 380 (486)
T ss_pred CCccceeEEeeeeeeEEe-cCCccccCCCccEEEEEEEeCCCCCHHHHHHHHHHHhccC---------------------
Confidence 00001234789999999 9999999999999999999999999999999998887642
Q ss_pred CcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCC-CC-ccccCCCcchHHHHHHh
Q 024487 195 NIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGH-VN-PYSITGTLPLIRELQVR 252 (267)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~-~~-~~~~~g~~~~~~~~~~~ 252 (267)
+.++++......|++.++.++++++++++++++++|. .. +..++|++ +++.++..
T Consensus 381 --~~~v~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~~g~~~~~~~~~~g~t-Da~~~~~~ 437 (486)
T PRK08262 381 --RVEIEVLGGNSEPSPVSSTDSAAYKLLAATIREVFPDVVVAPYLVVGAT-DSRHYSGI 437 (486)
T ss_pred --ceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCccccceecccc-cHHHHHHh
Confidence 2333333222356777888899999999999998875 22 23445555 56677653
No 46
>PRK07079 hypothetical protein; Provisional
Probab=99.92 E-value=3.2e-23 Score=192.44 Aligned_cols=227 Identities=15% Similarity=0.142 Sum_probs=163.4
Q ss_pred hhhhc-ccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCC-----CCeeeeecceEEEEEEEE
Q 024487 2 RKLGE-TKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-----KQPCIGTGGMIPWKLHVT 75 (267)
Q Consensus 2 ~~L~~-~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~-----~~i~~g~~G~~~~~i~v~ 75 (267)
+.|++ .+..+.++|.|+|++|||+|+ .|++++++++. ..+++|++|+.|++. ..+++++||.++++|+++
T Consensus 140 ~~l~~~~~~~~~~~i~~~~~~dEE~g~---~G~~~l~~~~~-~~~~~d~~iv~e~~~~~~~~~~i~~g~kG~~~~~v~v~ 215 (469)
T PRK07079 140 EQVLAARGGRLGFNVKLLIEMGEEIGS---PGLAEVCRQHR-EALAADVLIASDGPRLSAERPTLFLGSRGAVNFRLRVN 215 (469)
T ss_pred HHHHHhcCCCCCCCEEEEEECccccCC---ccHHHHHHHhH-HhcCCCEEEEeCCCccCCCCeEEEEecceEEEEEEEEe
Confidence 34443 346788999999999999998 79999998642 234579999999763 247899999999999999
Q ss_pred ec--CCCcCCCCCC--CCHHHHHHHHHHHHHHhhcc--------------------CCCCCCccccC-------------
Q 024487 76 GK--LFHSGLPHKA--INPLELAMEALKVIQTRFYK--------------------DFPPHPKEQVY------------- 118 (267)
Q Consensus 76 G~--~~Hss~p~~g--~nai~~~~~~i~~l~~~~~~--------------------~~~~~~~~~~~------------- 118 (267)
|+ +.||+ ++.| .||+..+++++..+.+.... ...........
T Consensus 216 G~~~~~hs~-~~~g~~~nai~~l~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (469)
T PRK07079 216 LRDGAHHSG-NWGGLLRNPGTVLAHAIASLVDARGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTP 294 (469)
T ss_pred eCCCCCCCC-ccccccCCHHHHHHHHHHHhCCCCCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCH
Confidence 98 44666 4443 69999999999988542100 00000000000
Q ss_pred --CCCCCCeeeeEEEecCCC---ccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCC
Q 024487 119 --GFETPSTMKPTQWSYPGG---GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPD 193 (267)
Q Consensus 119 --~~~~~~t~~~~~i~~gg~---~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 193 (267)
.....+|++++.|+ +|. ..|+||++|++.+|+|+.|+++.+++.++|++++++...
T Consensus 295 ~~~~~~~~t~nv~~i~-gG~~~~~~NvVP~~a~~~vdiR~~P~~~~e~v~~~l~~~i~~~~~------------------ 355 (469)
T PRK07079 295 AERVFGWNTLEVLAFK-TGNPDAPVNAIPGSARAVCQLRFVVGTDWENLAPHLRAHLDAHGF------------------ 355 (469)
T ss_pred HHHHhhCCceEEEeee-cCCCCCcceEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcCC------------------
Confidence 01123688999999 773 589999999999999999999999999999999886311
Q ss_pred CCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCc-cc-cCCCcchHHHHHH-hcceee
Q 024487 194 ENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNP-YS-ITGTLPLIRELQV-RYMLFS 257 (267)
Q Consensus 194 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~-~~-~~g~~~~~~~~~~-~g~~f~ 257 (267)
..+++++....+|+.++.++|+++++.+++++++|..+. .. ++|+++ ++.+.+ .|++-+
T Consensus 356 ----~~v~~~~~~~~~p~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~~g~~d-~~~~~~~~giP~v 417 (469)
T PRK07079 356 ----PMVEVTVERGSPATRLDPDDPWVRWALASIARTTGKKPALLPNLGGSLP-NDVFADILGLPTL 417 (469)
T ss_pred ----CCeEEEEeCCCCceecCCCCHHHHHHHHHHHHHhCCCCceecCCCcchh-HHHHHHHhCCCEE
Confidence 124556556678888999999999999999999887543 33 344444 555553 566544
No 47
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.92 E-value=5.1e-23 Score=190.69 Aligned_cols=220 Identities=15% Similarity=0.070 Sum_probs=155.7
Q ss_pred ChhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEE---------ecCCCCCee----------
Q 024487 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYW---------IDTADKQPC---------- 61 (267)
Q Consensus 1 ~~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~---------~e~~~~~i~---------- 61 (267)
+++|++.+.+++++|+|+|++|||+|+ .|+.++++.+. .+|++++ +|++...+.
T Consensus 129 ~~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~~~~~~----~~d~~~~~d~~~~~~~ge~g~~~~~~~~~~~~~~~ 201 (466)
T TIGR01886 129 MKILKELGLPPSKKIRFVVGTNEETGW---VDMDYYFKHEE----TPDFGFSPDAEFPIINGEKGNFTLELSFKGDNKGD 201 (466)
T ss_pred HHHHHHhCCCCCCCEEEEEECccccCc---ccHHHHHhcCc----CCCEEEECCCCceeEEEecceEEEEEEEecCCCCc
Confidence 357788888899999999999999998 79999998653 2455433 333221100
Q ss_pred --------------------------------------eeecceE---------EEEEEEEecCCCcCCCCCCCCHHHHH
Q 024487 62 --------------------------------------IGTGGMI---------PWKLHVTGKLFHSGLPHKAINPLELA 94 (267)
Q Consensus 62 --------------------------------------~g~~G~~---------~~~i~v~G~~~Hss~p~~g~nai~~~ 94 (267)
.+++|.+ |++|+++|+++|+|.|+.|+||+..|
T Consensus 202 ~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~ 281 (466)
T TIGR01886 202 YVLDSFKAGLAENMVPQVARAVISGPDAEALKAAYESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFL 281 (466)
T ss_pred eeEEEEEcCCcCCccCCeeEEEEecCCHHHHHHHHHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHH
Confidence 1244543 78899999999999999999999999
Q ss_pred HHHHHHH----------HH---hhccC-CCCCC-ccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCH
Q 024487 95 MEALKVI----------QT---RFYKD-FPPHP-KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (267)
Q Consensus 95 ~~~i~~l----------~~---~~~~~-~~~~~-~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~ 159 (267)
++++..+ +. .+... ..... ..........+|++++.|+ +|.. | ++|++.+|+|++|+++.
T Consensus 282 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~S~nvgvI~-gG~~-~---~~~~l~iD~R~~Pge~~ 356 (466)
T TIGR01886 282 ALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKLGIAFHDELMGDLAMNAGMFD-FDHA-N---KESKLLLNFRYPQGTSP 356 (466)
T ss_pred HHHHHhccCChhHHHHHHHHHHhcCCCCCcccCCCcccccCcCceEEEeEEEE-EecC-C---ceEEEEEEEecCCCCCH
Confidence 9988873 21 11000 00000 0001123456899999999 6644 3 89999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecc-cCCcccCCCCCHHHHHHHHHHHHHhCCCC-cc
Q 024487 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-ATNGVACNLDSRGFHVLCKATEEVVGHVN-PY 237 (267)
Q Consensus 160 ~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~v~~l~~a~~~~~g~~~-~~ 237 (267)
+++.++|++.+... . ++++.. ..+|..++.++++++.+.+++++++|.++ ..
T Consensus 357 eev~~eI~~~i~~~------------------------~--~v~~~~~~~~P~~~~~ds~lv~~l~~a~~~v~G~~~~~~ 410 (466)
T TIGR01886 357 ETMQKQVLDKFGGI------------------------V--DVTYNGHFEEPHYVPGSDPLVQTLLKVYEKHTGKKGHEV 410 (466)
T ss_pred HHHHHHHHHHHhcc------------------------c--EEEEecccCCCcccCCCCHHHHHHHHHHHHHhCCCCcee
Confidence 99999988887631 1 223221 24566688889999999999999988744 34
Q ss_pred ccCCCcchHHHHHHhcceee---ecC
Q 024487 238 SITGTLPLIRELQVRYMLFS---MSD 260 (267)
Q Consensus 238 ~~~g~~~~~~~~~~~g~~f~---~~~ 260 (267)
.++|++ +++.+. .+++|+ |++
T Consensus 411 ~~~ggT-Da~~~~-~~i~~gv~gPG~ 434 (466)
T TIGR01886 411 IIGGGT-YGRLLE-RGVAYGAMFEGG 434 (466)
T ss_pred eecCcc-HHHhcc-cccccccccCCC
Confidence 456666 788887 578888 664
No 48
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.92 E-value=3.8e-23 Score=189.10 Aligned_cols=224 Identities=15% Similarity=0.072 Sum_probs=159.4
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCC--CcccHHHHHHccc--------------------cCcCCCCcEEE--ecC--
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAI--TGVGVDALVKDGL--------------------LNKLKGGPLYW--IDT-- 55 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~--~~~Ga~~l~~~~~--------------------~~~~~~d~~i~--~e~-- 55 (267)
+.|++.+..++++|.|++++|||+++- ...|++.+..... ..++.+|++.+ .||
T Consensus 106 ~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ep~~ 185 (414)
T PRK12890 106 AALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVLATRDDDGTTLAEALRRIGGDPDALPGALRPPGA 185 (414)
T ss_pred HHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcccChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCC
Confidence 567777778899999999999997420 0157665543210 01223344332 343
Q ss_pred -------------------CCCCeeeeecceEEEEEEEEecCCCcCC-CC-CCCCHHHHHHHHHHHHHHhhccCCCCCCc
Q 024487 56 -------------------ADKQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPK 114 (267)
Q Consensus 56 -------------------~~~~i~~g~~G~~~~~i~v~G~~~Hss~-p~-~g~nai~~~~~~i~~l~~~~~~~~~~~~~ 114 (267)
+...++.+++|..|++|+++|+++|+|. |+ .+.||+..|++++..|+++..+ ..
T Consensus 186 ~~~~~~~h~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~-~~---- 260 (414)
T PRK12890 186 VAAFLELHIEQGPVLEAEGLPIGVVTAIQGIRRQAVTVEGEANHAGTTPMDLRRDALVAAAELVTAMERRARA-LL---- 260 (414)
T ss_pred ccEEEEEeeCcCHHHHhCCCceEEEEeecCcEEEEEEEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHHHh-cC----
Confidence 2245788999999999999999999985 85 4589999999999999886422 11
Q ss_pred cccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCC
Q 024487 115 EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDE 194 (267)
Q Consensus 115 ~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 194 (267)
.+.+++++.|+.++...|+||++|++.+|+|+.|+++.++++++|++.+++.....
T Consensus 261 -------~~~~~~~g~i~~gg~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~----------------- 316 (414)
T PRK12890 261 -------HDLVATVGRLDVEPNAINVVPGRVVFTLDLRSPDDAVLEAAEAALLAELEAIAAAR----------------- 316 (414)
T ss_pred -------CCeEEEEEEEEECCCCceEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHh-----------------
Confidence 14678999999345899999999999999999999999999999999888765431
Q ss_pred CcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCC-ccccCCCcchHHHHHHhc---ceeeecC
Q 024487 195 NIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLPLIRELQVRY---MLFSMSD 260 (267)
Q Consensus 195 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~-~~~~~g~~~~~~~~~~~g---~~f~~~~ 260 (267)
+.+++++....+++. ..++++++.+.+++++ +|.++ ...++|++ +++++.+.| ++|.|+.
T Consensus 317 --~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~-~g~~~~~~~~~g~t-Da~~~~~~gp~~~~~gp~~ 380 (414)
T PRK12890 317 --GVRIELERLSRSEPV--PCDPALVDAVEAAAAR-LGYPSRRMPSGAGH-DAAAIARIGPSAMIFVPCR 380 (414)
T ss_pred --CCeEEEEEeecCCCc--CCCHHHHHHHHHHHHH-cCCCceecCCcccH-HHHHHHhhCCEEEEEecCC
Confidence 344555544445554 3467899999999987 47643 34556666 677777654 3466653
No 49
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.90 E-value=1.1e-22 Score=178.09 Aligned_cols=225 Identities=17% Similarity=0.182 Sum_probs=163.1
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecC--CCC---CeeeeecceEEEEEEEEe
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT--ADK---QPCIGTGGMIPWKLHVTG 76 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~--~~~---~i~~g~~G~~~~~i~v~G 76 (267)
+.|+..+..++++|.+.|++|||+++. .|++.+.+...+++.. -+.+..|+ +.. .+++++||.+|++|+++|
T Consensus 142 r~L~~~g~kp~Rti~lsfvpDEEi~G~--~Gm~~fa~~~~~~~l~-~~filDEG~~se~d~~~vfyaEkg~w~~~v~~~G 218 (420)
T KOG2275|consen 142 RNLKASGFKPKRTIHLSFVPDEEIGGH--IGMKEFAKTEEFKKLN-LGFILDEGGATENDFATVFYAEKGPWWLKVTANG 218 (420)
T ss_pred HHHHhcCCCcCceEEEEecCchhccCc--chHHHHhhhhhhcccc-eeEEecCCCCCcccceeEEEEeeceeEEEEEecC
Confidence 567888899999999999999999864 7999998733344433 23444555 333 458999999999999999
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCC
Q 024487 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPF 156 (267)
Q Consensus 77 ~~~Hss~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~ 156 (267)
++||||.|.. ..|+.++.++++++.+...++..-............+|++++.|+ ||...|++|...++.+|+|+.|.
T Consensus 219 ~~GHss~~~~-nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~~~~~vtT~Nv~~i~-GGv~~N~~P~~~ea~~dirv~~~ 296 (420)
T KOG2275|consen 219 TPGHSSYPPP-NTAIEKLEKLVESLEEFREKQVDLLASGPKLALGDVTTINVGIIN-GGVQSNVLPETFEAAFDIRVRPH 296 (420)
T ss_pred CCCCCCCCCC-ccHHHHHHHHHHHHHHhHHHHHHHhhcCCceeccceeEEeeeeee-cccccCcCchhheeeeeeEeccC
Confidence 9999998654 378888899888888753221110000011223346899999999 99999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecc-----cCCcccCCCCCHHHHHHHHHHHHH
Q 024487 157 YNVTDVMKRL-QEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDE-----ATNGVACNLDSRGFHVLCKATEEV 230 (267)
Q Consensus 157 ~~~~~v~~~l-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~~~~~~~~~~v~~l~~a~~~~ 230 (267)
.+..++.+++ .+++++... +. ++++.. ..|+...+.++|++..+..++++.
T Consensus 297 ~d~~~i~~~l~~~w~~~~~e---------------------g~--t~~f~~~~~~~~~~~t~~~~s~p~w~~~~~a~~~~ 353 (420)
T KOG2275|consen 297 VDVKAIRDQLEDEWAEEAGE---------------------GV--TLEFSQKVILDYPPVTPTDDSNPFWTAFAGALKDE 353 (420)
T ss_pred CCHHHHHHHHHHHhhhhcCC---------------------ce--EEeccCcccCCCCCCCCCCCCChHHHHHHHHHHHh
Confidence 9999999888 555554322 22 333322 233445666799999999999998
Q ss_pred hCCCCccccCCCcchHHHHHHhcce
Q 024487 231 VGHVNPYSITGTLPLIRELQVRYML 255 (267)
Q Consensus 231 ~g~~~~~~~~g~~~~~~~~~~~g~~ 255 (267)
.++..+.-+.|++ +.|+....|+.
T Consensus 354 ~~k~~~~i~~gst-dsr~~rn~gvp 377 (420)
T KOG2275|consen 354 GGKGYPEIGPGST-DSRHIRNEGVP 377 (420)
T ss_pred cCccceeeccccc-ccchhhhcCcc
Confidence 7764444455555 68888887765
No 50
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.90 E-value=3e-22 Score=182.53 Aligned_cols=226 Identities=13% Similarity=0.059 Sum_probs=158.6
Q ss_pred ChhhhcccCCCCccEEEEEEeccccCC--CCcccHHHHHHc-------cccC-------------cC----------CCC
Q 024487 1 MRKLGETKLKLKSTVIAVFIASEENSA--ITGVGVDALVKD-------GLLN-------------KL----------KGG 48 (267)
Q Consensus 1 ~~~L~~~~~~~~~~I~li~~~dEE~g~--~~~~Ga~~l~~~-------~~~~-------------~~----------~~d 48 (267)
++.|++++..++++|.+++..+||.+. ....|++.+.-. ...| ++ +++
T Consensus 100 ~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~~ 179 (406)
T TIGR03176 100 VDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRKAPTVRDDIK 179 (406)
T ss_pred HHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHHHhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCcccccccccccc
Confidence 467899999999999999999999751 001566666520 0000 01 123
Q ss_pred cEEEecCCCC----------CeeeeecceEEEEEEEEecCCCcCCCCC--CCCHHHHHHHHHHHHHHhhccCCCCCCccc
Q 024487 49 PLYWIDTADK----------QPCIGTGGMIPWKLHVTGKLFHSGLPHK--AINPLELAMEALKVIQTRFYKDFPPHPKEQ 116 (267)
Q Consensus 49 ~~i~~e~~~~----------~i~~g~~G~~~~~i~v~G~~~Hss~p~~--g~nai~~~~~~i~~l~~~~~~~~~~~~~~~ 116 (267)
+.+-+|...| .+..+.+|..+++|+++|+++|+|.|+. +.||+..+++++..+.+...+ ..
T Consensus 180 ~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~-~~------ 252 (406)
T TIGR03176 180 AFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSIERAKE-IG------ 252 (406)
T ss_pred eEEEEEECCCcchHHCCCeEEEEeecccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-cC------
Confidence 3444443222 3457899999999999999999997654 489999999999999876322 11
Q ss_pred cCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCc
Q 024487 117 VYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENI 196 (267)
Q Consensus 117 ~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (267)
.+.+++++.|+.+|+..|+||++|++.+|+|+.|.++.+++.++|++.+++.... +
T Consensus 253 -----~~~~~tvG~I~~gg~~~NvIP~~a~~~~DiR~~~~~~~e~v~~~i~~~i~~ia~~-------------------~ 308 (406)
T TIGR03176 253 -----DPLVLTFGKVEPVPNTVNVVPGETTFTIDCRHTDAAVLRNFTKELENDMKAIADE-------------------M 308 (406)
T ss_pred -----CCcEEEEEEEEEcCCceEEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH-------------------c
Confidence 1467899999855788999999999999999999888888888888888776543 1
Q ss_pred ceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCccccCCCcchHHHHH---HhcceeeecC
Q 024487 197 RGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLIRELQ---VRYMLFSMSD 260 (267)
Q Consensus 197 ~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~g~~~~~~~~~---~~g~~f~~~~ 260 (267)
+.+++++.....+|. +.++++++.+.+++++..+.......+|++ ++.++. +..|+|+|+.
T Consensus 309 g~~~ei~~~~~~~p~--~~d~~lv~~l~~a~~~~~~~~~~~~sggg~-Da~~~~~~vP~~~ifgp~~ 372 (406)
T TIGR03176 309 DITIDIDLWMDEAPV--PMNKEIVAIIEQLAKAEKLNYRLMHSGAGH-DAQIFAPRVPTAMIFVPSI 372 (406)
T ss_pred CCeEEEEEEecCCCC--CCCHHHHHHHHHHHHHcCCCceecCcccHH-HHHHHHHHCCEEEEEEeCC
Confidence 455555533233333 456799999999999865543334455555 444443 4568899974
No 51
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.90 E-value=1.5e-22 Score=187.75 Aligned_cols=224 Identities=16% Similarity=0.084 Sum_probs=156.0
Q ss_pred ChhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccC--cCCCCc---EEEecCCCCC----------------
Q 024487 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP---LYWIDTADKQ---------------- 59 (267)
Q Consensus 1 ~~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~--~~~~d~---~i~~e~~~~~---------------- 59 (267)
++.|++.+..++++|.|+|++|||+|+ .|++++++.+... .+.+|+ ++..|++...
T Consensus 130 l~~l~~~g~~~~~~i~l~~~~DEE~g~---~G~~~l~~~~~~~~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~ 206 (466)
T PRK07318 130 LKIIKELGLPLSKKVRFIVGTDEESGW---KCMDYYFEHEEAPDFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVL 206 (466)
T ss_pred HHHHHHcCCCCCccEEEEEEcccccCc---hhHHHHHHhCCCCCEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCcee
Confidence 356777788888999999999999998 7999999864211 112232 3444432100
Q ss_pred ------------------------------------eeeeecceE-----EEEEEEEecCCCcCCCCCCCCHHHHHHHHH
Q 024487 60 ------------------------------------PCIGTGGMI-----PWKLHVTGKLFHSGLPHKAINPLELAMEAL 98 (267)
Q Consensus 60 ------------------------------------i~~g~~G~~-----~~~i~v~G~~~Hss~p~~g~nai~~~~~~i 98 (267)
+..++||.. |++|+++|+++|+|.|+.|.|||..|++++
T Consensus 207 ~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i 286 (466)
T PRK07318 207 VSFKSGLRENMVPDSAEAVITGDDLDDLIAAFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFL 286 (466)
T ss_pred EEEEcCccceecCcccEEEEecCCHHHHHHHHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHH
Confidence 002467755 799999999999999999999999999999
Q ss_pred HHHHHh------h---ccCCC----CC--CccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHH
Q 024487 99 KVIQTR------F---YKDFP----PH--PKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVM 163 (267)
Q Consensus 99 ~~l~~~------~---~~~~~----~~--~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~ 163 (267)
..|+.. + .+... .. .........+..|++++.|+ +|... +|++.+|+|+.|+++.+++.
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~nvg~i~-gg~~~-----~~~~~iDiR~~p~~~~~~v~ 360 (466)
T PRK07318 287 NQLNLDGDAKAFLDFAAEYLHEDTRGEKLGIAYEDDVMGDLTMNVGVFS-FDEEK-----GGTLGLNFRYPVGTDFEKIK 360 (466)
T ss_pred HhccCchhHHHHHHHHHHhcCCCCCcccCCCcccCCCccCeEEEeeEEE-EecCc-----EEEEEEEEeCCCCCCHHHHH
Confidence 998641 0 00000 00 00000112235688999998 65321 79999999999999999999
Q ss_pred HHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCC-ccccCCC
Q 024487 164 KRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGT 242 (267)
Q Consensus 164 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~-~~~~~g~ 242 (267)
++|++.+++. + +++++...+||...+.++++++.+++++++++|.+. ...++|+
T Consensus 361 ~~i~~~~~~~-----------------------~--~~~~~~~~~~p~~~~~d~~lv~~l~~a~~~~~g~~~~~~~~~gg 415 (466)
T PRK07318 361 AKLEKLIGVT-----------------------G--VELSEHEHQKPHYVPKDDPLVKTLLKVYEKQTGLKGEEQVIGGG 415 (466)
T ss_pred HHHHHHHHhc-----------------------C--eEEEEccCCCceeeCCCCHHHHHHHHHHHHHhCCCCCeeEEcch
Confidence 9998887541 2 345544557777778899999999999999888743 3455555
Q ss_pred cchHHHHHHhcceeeecC
Q 024487 243 LPLIRELQVRYMLFSMSD 260 (267)
Q Consensus 243 ~~~~~~~~~~g~~f~~~~ 260 (267)
+ +++.+.. ++.|+|..
T Consensus 416 t-Da~~~~~-~i~~Gp~~ 431 (466)
T PRK07318 416 T-YARLLKR-GVAFGAMF 431 (466)
T ss_pred H-hHhhCCC-eEEeCCCC
Confidence 5 6777764 78888653
No 52
>PRK13381 peptidase T; Provisional
Probab=99.89 E-value=8.8e-22 Score=179.55 Aligned_cols=212 Identities=15% Similarity=0.107 Sum_probs=155.3
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCC-CCCeeeeecceEEEEEEEEecCCC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~-~~~i~~g~~G~~~~~i~v~G~~~H 80 (267)
+.|++++ .++++|+|+|++|||+|+ .|+++++.++ +.+|++++.|.. .+.+..+++|..|++|+++|+++|
T Consensus 151 ~~l~~~~-~~~g~i~~~~~~dEE~g~---~G~~~~~~~~----~~~d~~~~~~~~~~~~i~~~~~G~~~~~v~v~Gk~aH 222 (404)
T PRK13381 151 ENLTENE-VEHGDIVVAFVPDEEIGL---RGAKALDLAR----FPVDFAYTIDCCELGEVVYENFNAASAEITITGVTAH 222 (404)
T ss_pred HHHHhcC-CCCCCEEEEEEccccccc---ccHHHHHHhc----CCCCEEEEecCCCcceEEEecCcceEEEEEEEeEecC
Confidence 3455554 468899999999999987 7999998654 346788876543 356788999999999999999999
Q ss_pred cC-CCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCH
Q 024487 81 SG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (267)
Q Consensus 81 ss-~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~ 159 (267)
++ .|+.|.||+..|++++..|+++..+.... . ...+++++.++ ++ |++|++.+|+|+.|.++.
T Consensus 223 a~~~p~~g~NAI~~a~~~i~~l~~~~~~~~~~--------~-~~~~i~v~~i~-g~------p~~~~~~~diR~~~~~~~ 286 (404)
T PRK13381 223 PMSAKGVLVNPILMANDFISHFPRQETPEHTE--------G-REGYIWVNDLQ-GN------VNKAKLKLIIRDFDLDGF 286 (404)
T ss_pred CCCCcccCcCHHHHHHHHHHhCCccCCCCCCC--------C-cccEEEEEeEE-eC------cceEEEEEEEecCCHHHH
Confidence 87 48889999999999999887642111110 0 12456777776 42 899999999999998888
Q ss_pred HHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcc-eEEEEEeccc--CCcccCCCCCHHHHHHHHHHHHHhCCCCc
Q 024487 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIR-GSLTLTFDEA--TNGVACNLDSRGFHVLCKATEEVVGHVNP 236 (267)
Q Consensus 160 ~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~p~~~~~~~~~~v~~l~~a~~~~~g~~~~ 236 (267)
+++.++|++.++++.+.. + .++++++... .++..++.++++++++++++++ .|..+.
T Consensus 287 e~i~~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~lv~~l~~a~~~-~g~~~~ 346 (404)
T PRK13381 287 EARKQFIEEVVAKINAKY-------------------PTARVSLTLTDQYSNISNSIKDDRRAVDLAFDAMKE-LGIEPK 346 (404)
T ss_pred HHHHHHHHHHHHHHHHHc-------------------CCcEEEEEEEeCCchhhcccccCHHHHHHHHHHHHH-cCCCee
Confidence 888888988888765431 2 3445544332 2445677889999999999987 466443
Q ss_pred c-ccCCCcchHHHHHHhcceeee
Q 024487 237 Y-SITGTLPLIRELQVRYMLFSM 258 (267)
Q Consensus 237 ~-~~~g~~~~~~~~~~~g~~f~~ 258 (267)
. .++|++ +++++...|++-+.
T Consensus 347 ~~~~~g~t-Da~~~~~~giP~v~ 368 (404)
T PRK13381 347 VIPMRGGT-DGAALSAKGLPTPN 368 (404)
T ss_pred eccCCccc-hHHHHhcCCCCeEE
Confidence 3 455555 77888776665544
No 53
>PRK05469 peptidase T; Provisional
Probab=99.88 E-value=4.4e-21 Score=175.20 Aligned_cols=212 Identities=15% Similarity=0.056 Sum_probs=150.8
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCC-CCCeeeeecceEEEEEEEEecCCC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~-~~~i~~g~~G~~~~~i~v~G~~~H 80 (267)
++|++++..++++|.|+|++|||+| .|++.++.+. +..|+++..++. .+.+.++.+|..+++|+++|+++|
T Consensus 153 ~~l~~~~~~~~g~v~~~f~~dEE~g----~Ga~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~g~~~~~i~v~Gk~~H 224 (408)
T PRK05469 153 EYLIAHPEIKHGDIRVAFTPDEEIG----RGADKFDVEK----FGADFAYTVDGGPLGELEYENFNAASAKITIHGVNVH 224 (408)
T ss_pred HHHHhCCCCCCCCEEEEEecccccC----CCHHHhhhhh----cCCcEEEEecCCCcceEEeccCceeEEEEEEeeecCC
Confidence 4566666667899999999999986 4888887443 234666666543 346778889999999999999999
Q ss_pred cC-CCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCH
Q 024487 81 SG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (267)
Q Consensus 81 ss-~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~ 159 (267)
++ .|+.|+||+..+++++..|++....... .. ...+++++.++ + .|++|++.+|+|+.|.++.
T Consensus 225 a~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~--------~~-~~~~i~~g~i~-g------gp~~~~i~~diR~~~~e~~ 288 (408)
T PRK05469 225 PGTAKGKMVNALLLAADFHAMLPADETPETT--------EG-YEGFYHLTSIK-G------TVEEAELSYIIRDFDREGF 288 (408)
T ss_pred CCCCcccccCHHHHHHHHHHhCCCCCCCCCC--------CC-ceEEEEEEEEE-E------ccceEEEEEEEecCCHHHH
Confidence 87 5899999999999999887654211100 00 12345666666 4 3899999999999998888
Q ss_pred HHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCC--cccCCCCCHHHHHHHHHHHHHhCCCCc-
Q 024487 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATN--GVACNLDSRGFHVLCKATEEVVGHVNP- 236 (267)
Q Consensus 160 ~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~v~~l~~a~~~~~g~~~~- 236 (267)
+++.++|++.++....... ++++++++...++ +..++.++++++++++++++ .|..+.
T Consensus 289 e~i~~~i~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~~a~~~-~g~~~~~ 349 (408)
T PRK05469 289 EARKALMQEIAKKVNAKYG------------------EGRVELEIKDQYYNMREKIEPHPHIVDLAKQAMED-LGIEPII 349 (408)
T ss_pred HHHHHHHHHHHHHHHHHcC------------------CCeEEEEEeehhhhhhhhhcCCHHHHHHHHHHHHH-cCCCcEE
Confidence 8888888888877654310 2445555543333 33577788999999999988 476443
Q ss_pred cccCCCcchHHHHHHhcceee
Q 024487 237 YSITGTLPLIRELQVRYMLFS 257 (267)
Q Consensus 237 ~~~~g~~~~~~~~~~~g~~f~ 257 (267)
....|++ +++++...|++-+
T Consensus 350 ~~~~ggt-D~~~~~~~giP~v 369 (408)
T PRK05469 350 KPIRGGT-DGSQLSFMGLPCP 369 (408)
T ss_pred ecCCCcc-cHHHHhhCCCceE
Confidence 3455665 6677776666553
No 54
>PRK06156 hypothetical protein; Provisional
Probab=99.87 E-value=1.7e-20 Score=176.02 Aligned_cols=227 Identities=13% Similarity=0.112 Sum_probs=156.5
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcC--CCCc---EEEecCCCCC----------------e
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKL--KGGP---LYWIDTADKQ----------------P 60 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~--~~d~---~i~~e~~~~~----------------i 60 (267)
+.|++.+.+++++|.|+|++|||.|+ .|+++++.++...++ .+|+ +++.|++... +
T Consensus 167 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~G~~~~~~~~~~~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l 243 (520)
T PRK06156 167 KAIKDSGLPLARRIELLVYTTEETDG---DPLKYYLERYTPPDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEI 243 (520)
T ss_pred HHHHHcCCCCCceEEEEEecccccCc---hhHHHHHHhcCCCCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeE
Confidence 46777788888999999999999998 799999976532211 1121 3445543100 0
Q ss_pred ---------------------------------------eeeecceE---------EEEEEEEecCCCcCCCCCCCCHHH
Q 024487 61 ---------------------------------------CIGTGGMI---------PWKLHVTGKLFHSGLPHKAINPLE 92 (267)
Q Consensus 61 ---------------------------------------~~g~~G~~---------~~~i~v~G~~~Hss~p~~g~nai~ 92 (267)
..+++|.. |++|+++|+++|+|.|+.|+|||.
T Consensus 244 ~~~~gG~~~n~ip~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~ 323 (520)
T PRK06156 244 VAMTGGAFANQIPQTAVATLSGGDPAALAAALQAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVT 323 (520)
T ss_pred EEEEcCCcCCCCCCccEEEEecCCHHHHHHHHHHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHH
Confidence 11233544 899999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC------------CC-----CCCc-cccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeC
Q 024487 93 LAMEALKVIQTRFYKD------------FP-----PHPK-EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLT 154 (267)
Q Consensus 93 ~~~~~i~~l~~~~~~~------------~~-----~~~~-~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~ 154 (267)
.|++++..|++.+... .. .... .....+.+..+++++.|. +|. ++|++.+|+|++
T Consensus 324 ~aa~ii~~L~~~l~~~~~~~~~~~i~~~~~~~~~g~~~g~~~~~~~~g~~t~~~~~I~-gg~------~~~~l~iDiR~~ 396 (520)
T PRK06156 324 RLALFLQSLDGDLPHNHAADAARYINDLVGLDYLGEKFGVAYKDDFMGPLTLSPTVVG-QDD------KGTEVTVNLRRP 396 (520)
T ss_pred HHHHHHHhccccccchhHHHHHHHHHHhhCCCCccCcCCccccCCCccCcEEeeeEEE-EeC------CeEEEEEEeeCC
Confidence 9999999987521000 00 0000 000122334567777777 443 689999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCC
Q 024487 155 PFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV 234 (267)
Q Consensus 155 p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~ 234 (267)
|+++.++++++|++.++++... .+.++++.. ...+|...++++++++.+.+++++++|..
T Consensus 397 p~~~~eev~~~I~~~i~~~~~~-------------------~gv~ve~~~-~~~~p~~~~~d~~lv~~l~~a~~~~~G~~ 456 (520)
T PRK06156 397 VGKTPELLKGEIADALAAWQAK-------------------HQVALDIDY-YWGEPMVRDPKGPWLKTLLDVFGHFTGLD 456 (520)
T ss_pred CCCCHHHHHHHHHHHHHHHHhh-------------------cCceEEEee-cCCCceeeCCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999998875322 133444432 22456667889999999999999998884
Q ss_pred -CccccCCCcchHHHHHHhcceeeecC
Q 024487 235 -NPYSITGTLPLIRELQVRYMLFSMSD 260 (267)
Q Consensus 235 -~~~~~~g~~~~~~~~~~~g~~f~~~~ 260 (267)
.+..++|++ +++.+. ..+.|+|+.
T Consensus 457 ~~~~~~~ggT-Da~~~~-~~v~fGP~~ 481 (520)
T PRK06156 457 AKPVAIAGST-NAKLFP-NAVSFGPAM 481 (520)
T ss_pred CceeeecChh-hhhhCC-ccEEEcCCC
Confidence 345566666 677776 489999963
No 55
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.87 E-value=1.7e-20 Score=172.83 Aligned_cols=221 Identities=16% Similarity=0.102 Sum_probs=151.5
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccC--cCCCCc---EEEecC---------------------
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP---LYWIDT--------------------- 55 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~--~~~~d~---~i~~e~--------------------- 55 (267)
+.|++.+.+++++|.|+|++|||+|+ .|+.+++++.... .+.+|+ +++.++
T Consensus 119 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~~~~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~ 195 (447)
T TIGR01887 119 KILKELGLKLKKKIRFIFGTDEETGW---ACIDYYFEHEEAPDIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLES 195 (447)
T ss_pred HHHHHcCCCCCCcEEEEEECCcccCc---HhHHHHHHhcCCCCEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEE
Confidence 56777788889999999999999998 7999998763211 122343 444443
Q ss_pred ------CCCC-----eeeeec-------------------ceE-----EEEEEEEecCCCcCCCCCCCCHHHHHHHHHHH
Q 024487 56 ------ADKQ-----PCIGTG-------------------GMI-----PWKLHVTGKLFHSGLPHKAINPLELAMEALKV 100 (267)
Q Consensus 56 ------~~~~-----i~~g~~-------------------G~~-----~~~i~v~G~~~Hss~p~~g~nai~~~~~~i~~ 100 (267)
++.. ..++++ |.. |++|+++|+++|||.|+.|.||+..|++++..
T Consensus 196 ~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~ 275 (447)
T TIGR01887 196 FKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELEGSFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQ 275 (447)
T ss_pred EeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcceEEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHh
Confidence 2221 234444 776 79999999999999999999999999999998
Q ss_pred HH--Hhhcc-------CCC-----CCCccccC-CCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHH
Q 024487 101 IQ--TRFYK-------DFP-----PHPKEQVY-GFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKR 165 (267)
Q Consensus 101 l~--~~~~~-------~~~-----~~~~~~~~-~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~ 165 (267)
++ +...+ .+. ........ ...+.+|++++.|+ ++ +|++|++.+|+|++|+++.++++++
T Consensus 276 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~nvg~I~-~g-----~p~~~~~~~d~R~~p~~~~e~~~~~ 349 (447)
T TIGR01887 276 LNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLTMNVGVID-YE-----NAEAGLIGLNVRYPVGNDPDTMLKN 349 (447)
T ss_pred ccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcEEEEEEEE-Ee-----CCcEEEEEEEEecCCCCCHHHHHHH
Confidence 86 21000 000 00000000 11245789999998 55 4899999999999999999987777
Q ss_pred HHHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCC-ccccCCCcc
Q 024487 166 LQEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVN-PYSITGTLP 244 (267)
Q Consensus 166 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~-~~~~~g~~~ 244 (267)
+.+.+.. . ..+......+|...+.++++++++++++++.+|..+ +..++|++
T Consensus 350 i~~~~~~-------------------------~-~~~~~~~~~~p~~~~~~~~lv~~l~~~~~~~~g~~~~~~~~~ggt- 402 (447)
T TIGR01887 350 ELAKESG-------------------------I-VEVTENGYLKPLYVPKDDPLVQTLMKVYEKQTGDEGTPVAIGGGT- 402 (447)
T ss_pred HHHHhhC-------------------------c-EEEEEccCCCCeEECCCCHHHHHHHHHHHHHhCCCCCeeEecchh-
Confidence 7643221 0 122222234566678899999999999999988843 45566666
Q ss_pred hHHHHHHhcceeeec
Q 024487 245 LIRELQVRYMLFSMS 259 (267)
Q Consensus 245 ~~~~~~~~g~~f~~~ 259 (267)
+++.+.+ .+.|+|.
T Consensus 403 da~~~~~-~i~~Gp~ 416 (447)
T TIGR01887 403 YARLMEN-GVAFGAL 416 (447)
T ss_pred hhhhCCC-cEEeCCC
Confidence 6776654 6779864
No 56
>PRK07205 hypothetical protein; Provisional
Probab=99.86 E-value=2.8e-20 Score=171.62 Aligned_cols=219 Identities=15% Similarity=0.137 Sum_probs=144.4
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccC--cCCCCc--------------EEEecCCCC-------
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP--------------LYWIDTADK------- 58 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~--~~~~d~--------------~i~~e~~~~------- 58 (267)
+.|++.+.+++++|.|+|++|||+|+ .|++.+++..... .+.+|. .++.++++.
T Consensus 129 ~~l~~~~~~~~~~i~l~~~~dEE~g~---~g~~~~~~~~~~~~~~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~ 205 (444)
T PRK07205 129 KALLDAGVQFNKRIRFIFGTDEETLW---RCMNRYNEVEEQATMGFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQ 205 (444)
T ss_pred HHHHHcCCCCCCcEEEEEECCcccCc---ccHHHHHhCCCCCCeeECCCCCCceEEEEeceEEEEEEeCCccceEEecCC
Confidence 56777888889999999999999998 7899988642111 122332 334444321
Q ss_pred ----Ceeee-ec--------------ce----EEEEEEEEecCCCcCCCCCCCCHHHHHHHHHHHHHHh-----hccCCC
Q 024487 59 ----QPCIG-TG--------------GM----IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTR-----FYKDFP 110 (267)
Q Consensus 59 ----~i~~g-~~--------------G~----~~~~i~v~G~~~Hss~p~~g~nai~~~~~~i~~l~~~-----~~~~~~ 110 (267)
.+..+ ++ |. .+.+|+++|+++|||.|+.|.||+..|++++..+++. +.+.+.
T Consensus 206 ~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~ 285 (444)
T PRK07205 206 AFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKENEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPHPALDFLANVIG 285 (444)
T ss_pred cccccCceeEEEecCHHHHHHHHHhcCceEeecCcEEEEEeEEcccCCCccCcCHHHHHHHHHHhccHHHHHHHHHHhcC
Confidence 00111 22 21 3449999999999999999999999999999887642 111110
Q ss_pred CCC-c-----cccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCC
Q 024487 111 PHP-K-----EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRG 184 (267)
Q Consensus 111 ~~~-~-----~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~ 184 (267)
... . ..........|++++. .|+||++|++.+|+|+.|+++.+++.+.|++.+++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~t~nvg~-------~nvvP~~a~~~ld~R~~p~~~~e~v~~~i~~~~~~~----------- 347 (444)
T PRK07205 286 EDATGLNIFGDIEDEPSGKLSFNIAG-------LTITKEKSEIRIDIRIPVLADKEKLVQQLSQKAQEY----------- 347 (444)
T ss_pred CCCccccCCccccCCCcCCceEEeEE-------EEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHc-----------
Confidence 000 0 0000112235666654 479999999999999999999999999998877641
Q ss_pred CcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCc-cccCCCcchHHHHHHhcceee
Q 024487 185 PVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNP-YSITGTLPLIRELQVRYMLFS 257 (267)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~-~~~~g~~~~~~~~~~~g~~f~ 257 (267)
+ ++++.....+|+..+.++++++++.+++++++|.... ..++|++ +++.+. ..+.|+
T Consensus 348 ------------~--v~~~~~~~~~p~~~~~~~~lv~~l~~~~~~~~g~~~~~~~~gg~~-~~~~~~-~~i~~G 405 (444)
T PRK07205 348 ------------G--LTYEEFDYLAPLYVPLDSELVSTLMSVYQEKTGDDSPAQSSGGAT-FARTMP-NCVAFG 405 (444)
T ss_pred ------------C--cEEEEecCCCceeeCCCcHHHHHHHHHHHHHhCCCCceEEeccHH-HHHhCC-CcEEEC
Confidence 1 2333333467888889999999999999998887433 4455544 554443 234566
No 57
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.86 E-value=5.5e-21 Score=174.61 Aligned_cols=214 Identities=14% Similarity=0.082 Sum_probs=146.5
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCC-CCCeeeeecceEEEEEEEEecCCC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~-~~~i~~g~~G~~~~~i~v~G~~~H 80 (267)
+.|++++..++++|+|+|++|||+| .|++.++.++ ++.|+.+..++. .+.+.+...|..+++|+++|+++|
T Consensus 155 ~~L~e~~~~~~g~I~~~ft~dEE~g----~Ga~~l~~~~----~~~~~~~~i~gep~g~i~~~~~g~~~~~I~v~Gk~aH 226 (410)
T TIGR01882 155 DYLINHPEIKHGTIRVAFTPDEEIG----RGAHKFDVKD----FNADFAYTVDGGPLGELEYETFSAAAAKITIQGNNVH 226 (410)
T ss_pred HHHHhCCCCCCCCEEEEEECcccCC----cCcchhhhhh----cCccEEEEeCCCCCCeEEEccccceEEEEEEEEEecC
Confidence 4666654346899999999999986 5888886543 234455444432 234666677999999999999999
Q ss_pred cCCC-CCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCH
Q 024487 81 SGLP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (267)
Q Consensus 81 ss~p-~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~ 159 (267)
++.+ +.|+||+..+.+++..+.... .+. .++-+.+.++ ++ ..|.+|++|++.+|+|+.+.++.
T Consensus 227 a~~~~~~g~nAi~~a~~~~~~l~~~~----~~~----------~t~~~~g~i~-~g-~i~giPd~a~l~~diR~~~~e~~ 290 (410)
T TIGR01882 227 PGTAKGKMINAAQIAIDLHNLLPEDD----RPE----------YTEGREGFFH-LL-SIDGTVEEAKLHYIIRDFEKENF 290 (410)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCcC----CCc----------cccceeEEEE-EE-eEEEecCEEEEEEEEecCCHHHH
Confidence 9976 679999999988876554321 110 0111123444 33 46779999999999999998888
Q ss_pred HHHHHHHHHHHHHhhhhhcccccCCCcccccCCCCCcc-eEEEEEecccCC--cccCCCCCHHHHHHHHHHHHHhCCCC-
Q 024487 160 TDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDENIR-GSLTLTFDEATN--GVACNLDSRGFHVLCKATEEVVGHVN- 235 (267)
Q Consensus 160 ~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p--~~~~~~~~~~v~~l~~a~~~~~g~~~- 235 (267)
+++.++|++.++...+.. + ..+++++...++ ++.++.++++++.+++++++ .|..+
T Consensus 291 e~i~~~i~~i~~~~~~~~-------------------g~~~v~~~~~~~~~~~~~~~~~~~~lv~~~~~a~~~-~G~~~~ 350 (410)
T TIGR01882 291 QERKELMKRIVEKMNNEY-------------------GQDRIKLDMNDQYYNMAEKIEKVMEIVDIAKQAMEN-LGIEPK 350 (410)
T ss_pred HHHHHHHHHHHHHHHHHc-------------------CCceEEEEEEeeecChhhccCCCHHHHHHHHHHHHH-hCCCCc
Confidence 888888888887765431 2 123444433333 45677889999999999987 46533
Q ss_pred ccccCCCcchHHHHHHhc---ceeeecC
Q 024487 236 PYSITGTLPLIRELQVRY---MLFSMSD 260 (267)
Q Consensus 236 ~~~~~g~~~~~~~~~~~g---~~f~~~~ 260 (267)
...+.|++ ++..+...| +.|.+++
T Consensus 351 ~~~~~ggt-Da~~~~~~Gip~~~~G~G~ 377 (410)
T TIGR01882 351 ISPIRGGT-DGSQLSYMGLPTPNIFAGG 377 (410)
T ss_pred ccccceec-hHHHHHhCCCCCCeEcCCc
Confidence 34456666 667777777 4555553
No 58
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.86 E-value=6.9e-20 Score=173.87 Aligned_cols=223 Identities=18% Similarity=0.175 Sum_probs=157.8
Q ss_pred ChhhhcccCCCCccEEEEEEecccc-----CCCCcccHHHHH--------H----ccc-----cC--cC-----------
Q 024487 1 MRKLGETKLKLKSTVIAVFIASEEN-----SAITGVGVDALV--------K----DGL-----LN--KL----------- 45 (267)
Q Consensus 1 ~~~L~~~~~~~~~~I~li~~~dEE~-----g~~~~~Ga~~l~--------~----~~~-----~~--~~----------- 45 (267)
++.|++++++++++|.+++.++||. +. .|.+.+. + +|. ++ ++
T Consensus 282 ~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~---~GS~~~~G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~ 358 (591)
T PRK13799 282 VKELHEQGERLPFHFEVIAFAEEEGQRFKATF---LGSGALIGDFNMELLDIKDADGISLREAIQHAGHCIDAIPKIARD 358 (591)
T ss_pred HHHHHHcCCCCCCCeEEEEecCCCccCCCccc---cchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 3678999999999999999999997 33 4555554 1 121 00 01
Q ss_pred --CCCcEEEecCCCC----------CeeeeecceEEEEEEEEecCCCcCC-CC-CCCCHHHHHHHHHHHHHHhhccCCCC
Q 024487 46 --KGGPLYWIDTADK----------QPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPP 111 (267)
Q Consensus 46 --~~d~~i~~e~~~~----------~i~~g~~G~~~~~i~v~G~~~Hss~-p~-~g~nai~~~~~~i~~l~~~~~~~~~~ 111 (267)
++++.+-+|...| .++++++|..+++|+++|+++|+|. |. .+.||+..+++++..+++...+. +
T Consensus 359 ~~~~~a~~ElHIEQgp~Le~~~~~igvV~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~~--~ 436 (591)
T PRK13799 359 PADVLGFIEVHIEQGPVLLELDIPLGIVTSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQD--Q 436 (591)
T ss_pred CCCccEEEEEEeCCCHHHHHCCCcEEEEeeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHhc--C
Confidence 1234444443333 3568999999999999999999996 53 58999999999999998864321 1
Q ss_pred CCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccC
Q 024487 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVL 191 (267)
Q Consensus 112 ~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 191 (267)
. ...+++++.|+.++...|+||++|++.+|+|+.++++.+++.+++++.+++..+..
T Consensus 437 ~---------~~~v~tVG~I~~~~ga~NvIP~~a~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~~-------------- 493 (591)
T PRK13799 437 H---------ASLVATMGQLNVPSGSTNVIPGRCQFSLDIRAATDEIRDAAVADILAEIAAIAARR-------------- 493 (591)
T ss_pred C---------CCcEEEEEEEEecCCCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 1 12467899998444589999999999999999998888888888888887766541
Q ss_pred CCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCc-cccCCCcchHHHHHHh---cceeeecC
Q 024487 192 PDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNP-YSITGTLPLIRELQVR---YMLFSMSD 260 (267)
Q Consensus 192 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~-~~~~g~~~~~~~~~~~---g~~f~~~~ 260 (267)
+.++++++....|+ +..+.++++.+.+++++ +|..+. ...+||+ ++.++.+. +|+|+++.
T Consensus 494 -----g~~~ei~~~~~~~~--~~~d~~lv~~~~~a~~~-~G~~~~~~~sgag~-Da~~~a~~~p~amif~~~g 557 (591)
T PRK13799 494 -----GIEYKAELAMKAAA--APCAPELMKQLEAATDA-AGVPLFELASGAGH-DAMKIAEIMDQAMLFTRCG 557 (591)
T ss_pred -----CCeEEEEEEecCCC--cCCCHHHHHHHHHHHHH-cCCCceecCcchHH-HHHHHHhhCCEEEEEEecC
Confidence 34455555444444 34556799999988876 576443 3445555 66666665 47999874
No 59
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.85 E-value=1.4e-19 Score=168.33 Aligned_cols=228 Identities=16% Similarity=0.139 Sum_probs=144.3
Q ss_pred hhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecC-----------CCCCe------eee--
Q 024487 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT-----------ADKQP------CIG-- 63 (267)
Q Consensus 3 ~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~-----------~~~~i------~~g-- 63 (267)
+|++.+ ..+++|.++|++|||+|+ .|++++..+.. ..++++..++ +.... .+.
T Consensus 120 ~~~~~~-~~~~~i~~~~~~dEE~g~---~Gs~~l~~~~~----~~~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~ 191 (477)
T TIGR01893 120 ILEDNN-LKHPPLELLFTVDEETGM---DGALGLDENWL----SGKILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKF 191 (477)
T ss_pred HHhcCC-CCCCCEEEEEEeccccCc---hhhhhcChhhc----CCcEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEec
Confidence 344433 356799999999999987 79999875432 2234444442 22111 111
Q ss_pred ecceEEEEEEEEe-cCCCcC-CCCCC-CCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccce
Q 024487 64 TGGMIPWKLHVTG-KLFHSG-LPHKA-INPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQ 140 (267)
Q Consensus 64 ~~G~~~~~i~v~G-~~~Hss-~p~~g-~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ 140 (267)
++|..+++|+++| +++||| .|+.+ .||+..|++++..+.+.. .++++.+. ||...|+
T Consensus 192 ~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~~-------------------~~~v~~~~-gg~~~N~ 251 (477)
T TIGR01893 192 TKNEEGYQISLKGLKGGHSGADIHKGRANANKLMARVLNELKENL-------------------NFRLSDIK-GGSKRNA 251 (477)
T ss_pred CCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhhhcC-------------------CeEEEEEe-CCCcccc
Confidence 5799999999999 999998 58887 599999999998887531 14567777 8888888
Q ss_pred eCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhh---------------------------------hc----cc---
Q 024487 141 IPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN---------------------------------IE----KL--- 180 (267)
Q Consensus 141 ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~---------------------------------~~----~~--- 180 (267)
||++|++.+|+|.......+++++.+.+.++..... +. ..
T Consensus 252 ip~~~~~~~diR~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~~g~~~~~~~ 331 (477)
T TIGR01893 252 IPREAKALIAIDENDVKLLENLVKNFQSKFKSEYSELEPNITIEVSKRENSVKVFSENTTDKLINALNGLPNGVQSVSDE 331 (477)
T ss_pred cCCceEEEEEEChhHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEECCCcccccCHHHHHHHHHHHHHCCccceeeccC
Confidence 888888888888765444444444444444332210 00 00
Q ss_pred -------------------------ccCCCcccc------cCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHH
Q 024487 181 -------------------------DTRGPVSKY------VLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEE 229 (267)
Q Consensus 181 -------------------------~~~~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~ 229 (267)
+.|-|...- .+.+.-....++++.....||+.+++++|+++.+.+++++
T Consensus 332 ~~~~~~~t~n~g~i~~~~~~~~~~i~~R~~~~~~~~~i~~~i~~~~~~~~~~v~~~~~~~p~~~~~d~plv~~l~~a~~~ 411 (477)
T TIGR01893 332 EPGLVESSLNLGVVKTKENKVIFTFLIRSSVESDKDYVTEKIESIAKLAGARVEVSAGYPSWQPDPQSNLLDTARKVYSE 411 (477)
T ss_pred CCCeEEeeeeEEEEEEcCCEEEEEEEeCCCCchhHHHHHHHHHHHhhhcCeEEEEecCCCcccCCCCCHHHHHHHHHHHH
Confidence 000000000 0000000012345555668999999999999999999999
Q ss_pred HhCCCC-ccccCCCcchHHHHHHh--c---ceeeec
Q 024487 230 VVGHVN-PYSITGTLPLIRELQVR--Y---MLFSMS 259 (267)
Q Consensus 230 ~~g~~~-~~~~~g~~~~~~~~~~~--g---~~f~~~ 259 (267)
++|.++ ...++|+++ +..+.+. + +.|+|+
T Consensus 412 ~~g~~~~~~~~~Ggtd-~~~~~~~~~~i~~v~~Gp~ 446 (477)
T TIGR01893 412 MFGEDPEVKVIHAGLE-CGIISSKIPDIDMISIGPN 446 (477)
T ss_pred HHCCCCeEEEeecCcc-HHHHHhhCCCceEEEeCCC
Confidence 999854 457778876 5666654 5 446654
No 60
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.85 E-value=1.7e-19 Score=171.29 Aligned_cols=221 Identities=18% Similarity=0.153 Sum_probs=155.4
Q ss_pred ChhhhcccCCCCccEEEEEEeccccC-----CCCcccHHH--------HHHc----cc-------cCcC-----------
Q 024487 1 MRKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDA--------LVKD----GL-------LNKL----------- 45 (267)
Q Consensus 1 ~~~L~~~~~~~~~~I~li~~~dEE~g-----~~~~~Ga~~--------l~~~----~~-------~~~~----------- 45 (267)
++.|+++++.++++|.+++.+|||.+ . .|++. +++. |. ..++
T Consensus 282 ~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~---~GS~~~~G~~~~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~ 358 (591)
T PRK13590 282 VRELHRQGRRLPFGLEVVGFAEEEGQRYKATF---LGSGALIGDFDPAWLDQKDADGITMREAMQHAGLCIDDIPKLRRD 358 (591)
T ss_pred HHHHHHcCCCCCCCeEEEEecCCccccCCccc---cchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 46789999888999999999999973 2 35553 2221 10 0011
Q ss_pred --CCCcEEEe--cCC--------CCCeeeeecceEEEEEEEEecCCCcCC-CCC-CCCHHHHHHHHHHHHHHhhccCCCC
Q 024487 46 --KGGPLYWI--DTA--------DKQPCIGTGGMIPWKLHVTGKLFHSGL-PHK-AINPLELAMEALKVIQTRFYKDFPP 111 (267)
Q Consensus 46 --~~d~~i~~--e~~--------~~~i~~g~~G~~~~~i~v~G~~~Hss~-p~~-g~nai~~~~~~i~~l~~~~~~~~~~ 111 (267)
++++.+-. |++ ...+.++++|..+++|+++|+++|+|. |.. +.||+..+++++..+++... . .
T Consensus 359 ~~~~~a~~ElHiEqg~~Le~~~~~~gvV~~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~-~-~- 435 (591)
T PRK13590 359 PARYLGFVEVHIEQGPVLNELDLPLGIVTSINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAA-Q-D- 435 (591)
T ss_pred CCCccEEEEEEeCCCHHHHHCCCceEEEeeeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHh-c-C-
Confidence 11233333 332 134678999999999999999999996 544 68999999999999987532 1 1
Q ss_pred CCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcccccC
Q 024487 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVL 191 (267)
Q Consensus 112 ~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 191 (267)
...+++++.++.+|+..|+||++|++.+|+|+.++++.+++.+.|++.+++..+.
T Consensus 436 ----------~~~v~tVG~i~~~Gg~~NVIP~~a~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~--------------- 490 (591)
T PRK13590 436 ----------GDSVGTVGMLEVPGGSINVVPGRCRFSLDIRAPTDAQRDAMVADVLAELEAICER--------------- 490 (591)
T ss_pred ----------CCcEEEEEEEEECCCCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 1246789998854668999999999999999999888888888888888776543
Q ss_pred CCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCc-cccCCCcchHHHHHH---hcceeeecC
Q 024487 192 PDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNP-YSITGTLPLIRELQV---RYMLFSMSD 260 (267)
Q Consensus 192 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~-~~~~g~~~~~~~~~~---~g~~f~~~~ 260 (267)
++.+++++.....++ +..+.++++.+.+++++ +|..+. ...+||+ ++.++.. .+|+|+||.
T Consensus 491 ----~g~~vei~~~~~~~~--~~~d~~lv~~~~~aa~~-~G~~~~~~~sggg~-Da~~~a~~~p~~mifgpg~ 555 (591)
T PRK13590 491 ----RGLRYTLEETMRAAA--APSAPAWQQRWEAAVAA-LGLPLFRMPSGAGH-DAMKLHEIMPQAMLFVRGE 555 (591)
T ss_pred ----cCCeEEEEEeecCCC--cCCCHHHHHHHHHHHHH-cCCCcccCCcchhH-HHHHHHHHCCEEEEEEeeC
Confidence 245556654443444 45567899999999987 576433 4455555 4555444 567899985
No 61
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.83 E-value=3.4e-19 Score=155.19 Aligned_cols=230 Identities=20% Similarity=0.321 Sum_probs=171.3
Q ss_pred ChhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHc---cccCcCCCCcEEEecCC---CCCee--eeecceEEEEE
Q 024487 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD---GLLNKLKGGPLYWIDTA---DKQPC--IGTGGMIPWKL 72 (267)
Q Consensus 1 ~~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~---~~~~~~~~d~~i~~e~~---~~~i~--~g~~G~~~~~i 72 (267)
+++|++++.+++.||+|+|...||.|+ .|...++.+ .++++ .|++.+.+.. ...+| +|.||.+.+.|
T Consensus 144 v~a~~~~g~~lpvnv~f~~EgmEEsgS---~~L~~l~~~~kD~~~~~--vD~vciSdnyWlg~kkPcltyGlRG~~yf~i 218 (473)
T KOG2276|consen 144 VKALQQLGIDLPVNVVFVFEGMEESGS---EGLDELIEKEKDKFFKD--VDFVCISDNYWLGTKKPCLTYGLRGVIYFQI 218 (473)
T ss_pred HHHHHHhCccccceEEEEEEechhccC---ccHHHHHHHHhhhhhcc--CCEEEeeCceeccCCCcccccccccceeEEE
Confidence 468899999999999999999999999 678888764 33443 5788887753 23444 78999999999
Q ss_pred EEEe--cCCCcCCCC-CCCCHHHHHHHHHHHHHHh--------hccCCCCCCccc---------------------cCCC
Q 024487 73 HVTG--KLFHSGLPH-KAINPLELAMEALKVIQTR--------FYKDFPPHPKEQ---------------------VYGF 120 (267)
Q Consensus 73 ~v~G--~~~Hss~p~-~g~nai~~~~~~i~~l~~~--------~~~~~~~~~~~~---------------------~~~~ 120 (267)
++.| +..|||..- .-.-|+..|..++..|.+. +++.+.|..+.+ ...+
T Consensus 219 ~v~g~~~DlHSGvfGG~~hE~m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~~ 298 (473)
T KOG2276|consen 219 EVEGPSKDLHSGVFGGVVHEAMNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLPT 298 (473)
T ss_pred EEeecccccccccccchhHHHHHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhcccccccccc
Confidence 9999 789999542 1234666666666665542 223333322100 0011
Q ss_pred C----------CCCeeeeEEEe---cCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcccccCCCcc
Q 024487 121 E----------TPSTMKPTQWS---YPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVS 187 (267)
Q Consensus 121 ~----------~~~t~~~~~i~---~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~~~~~~~~~ 187 (267)
. ..+++++..|. .+.++..+||.++...+.+|+.|.++++.+.+.+.+++++..++ ++.+
T Consensus 299 ~~k~~~l~~rWryPSLsihgIeGaFs~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~---~nS~---- 371 (473)
T KOG2276|consen 299 DDKKRILMHRWRYPSLSIHGIEGAFSGPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAE---LNSP---- 371 (473)
T ss_pred CchHHHhhhhcccCccceecccceeeCCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHh---cCCC----
Confidence 1 12566666665 25667889999999999999999999999999999999988766 3333
Q ss_pred cccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCc-cccCCCcchHHHHHHh
Q 024487 188 KYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNP-YSITGTLPLIRELQVR 252 (267)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~-~~~~g~~~~~~~~~~~ 252 (267)
.+++++..+...+|..+++++.+.++++|++.++|..|. .+.||++|..+.+|+.
T Consensus 372 ----------N~l~~~~~~~~~~Wv~d~~~~~y~a~krA~~~v~gvePd~~ReGgSIPvt~tfQ~~ 427 (473)
T KOG2276|consen 372 ----------NKLKVSMGHAGAPWVSDPDDPHYLALKRAIETVYGVEPDFTREGGSIPVTLTFQDI 427 (473)
T ss_pred ----------CceEEeecCCCCceecCCCchhHHHHHHHHHHhhCCCCCccccCCccceehHHHHH
Confidence 355777788889999999999999999999999999555 5777788999999986
No 62
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.83 E-value=3.6e-19 Score=165.23 Aligned_cols=230 Identities=17% Similarity=0.184 Sum_probs=156.7
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCC-CCeeeee----------------
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGT---------------- 64 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~-~~i~~g~---------------- 64 (267)
.+|++.+. .+++|.++|++|||+|+ .|++.+.. .. .++|++|+.|++. +.++.++
T Consensus 125 ~~l~~~~~-~~~~i~~l~t~dEE~G~---~ga~~l~~-~~---~~~~~~i~~e~~~~g~l~~g~~G~~~~~~~~~~~r~~ 196 (485)
T PRK15026 125 AVLADENV-VHGPLEVLLTMTEEAGM---DGAFGLQS-NW---LQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREA 196 (485)
T ss_pred HHHHhCCC-CCCCEEEEEEcccccCc---HhHHHhhh-cc---CCcCEEEEeCCCCCCeEEEeCCCcceEEEEEEEEEEe
Confidence 45655554 48899999999999998 79999864 22 3578999999874 5676655
Q ss_pred --cceEEEEEEEEe-cCCCcC-CCCCCC-CHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccc
Q 024487 65 --GGMIPWKLHVTG-KLFHSG-LPHKAI-NPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGIN 139 (267)
Q Consensus 65 --~G~~~~~i~v~G-~~~Hss-~p~~g~-nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n 139 (267)
+|...++|+++| +++||+ .|+.|+ ||+..|++++..+.. ..+++++.|+ ||+..|
T Consensus 197 ~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~~~-------------------~~~~~v~~i~-GG~~~N 256 (485)
T PRK15026 197 VPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAE-------------------ELDLRLIDFN-GGTLRN 256 (485)
T ss_pred cCCCceEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHhHh-------------------hCCeEEEEEe-CCCccC
Confidence 466789999999 999999 799998 999999999987431 1458899999 999999
Q ss_pred eeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhh------------------------------h---c--c----c
Q 024487 140 QIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN------------------------------I---E--K----L 180 (267)
Q Consensus 140 ~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~------------------------------~---~--~----~ 180 (267)
+||++|++.+++|.......+.+.+.+.+.+++-... + . . .
T Consensus 257 aIp~~a~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Gv~~~s~ 336 (485)
T PRK15026 257 AIPREAFATIAVAADKVDALKSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSD 336 (485)
T ss_pred CCCCCcEEEEEEChhHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEEccccccccCHHHHHHHHHHHHHCCcccEEecc
Confidence 9999999999999875333444444444333311100 0 0 0 0
Q ss_pred ccCCCcc--c----ccCCCCCcc--------------------------eEEEEEecccCCcccCCCCCHHHHHHHHHHH
Q 024487 181 DTRGPVS--K----YVLPDENIR--------------------------GSLTLTFDEATNGVACNLDSRGFHVLCKATE 228 (267)
Q Consensus 181 ~~~~~~~--~----~~~~~~~~~--------------------------~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~ 228 (267)
+..+.|. . ......... ...+++....+|+|..++++|+++.+.++++
T Consensus 337 ~~~g~v~~S~Nlg~v~~~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~~~g~~~~~~~~~p~w~~~~ds~lv~~l~~~y~ 416 (485)
T PRK15026 337 VAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQ 416 (485)
T ss_pred CCCCeEEeeeEEEEEEEeCCEEEEEEEecCCCchHHHHHHHHHHHHHHHcCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Confidence 0000000 0 000000000 0124455566999999999999999999999
Q ss_pred HHhCCCC-ccccCCCcchHHHHHH---h--cceeeecC
Q 024487 229 EVVGHVN-PYSITGTLPLIRELQV---R--YMLFSMSD 260 (267)
Q Consensus 229 ~~~g~~~-~~~~~g~~~~~~~~~~---~--g~~f~~~~ 260 (267)
+++|..+ +..+.||+. +..+.. . .+.|+|.-
T Consensus 417 e~~G~~~~~~~ihaglE-cG~~~~~~p~i~~VsfGP~~ 453 (485)
T PRK15026 417 RLFNKTPNIQIIHAGLE-CGLFKKPYPEMDMVSIGPTI 453 (485)
T ss_pred HHHCCCCeEEEEEEEeh-HHHHHhhCCCCCEEEECCCC
Confidence 9999854 456777774 344442 2 56677664
No 63
>PRK08554 peptidase; Reviewed
Probab=99.80 E-value=4.9e-18 Score=156.23 Aligned_cols=226 Identities=17% Similarity=0.122 Sum_probs=143.1
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCCCCeeeeecceEEEEEEE-------
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHV------- 74 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i~~g~~G~~~~~i~v------- 74 (267)
+.|++. .++++|.|+|++|||+|+ .+..+++++.......+|++|+.||+...+.+++++..++++++
T Consensus 116 ~~l~~~--~~~~~i~l~~~~dEE~g~---~~~~~~~~~~~~~~~~~~~~iv~Ept~~~~~~~~~kg~~~~~~~~~~~~~~ 190 (438)
T PRK08554 116 KELSKE--PLNGKVIFAFTGDEEIGG---AMAMHIAEKLREEGKLPKYMINADGIGMKPIIRRRKGFGVTIRVPSEKVKV 190 (438)
T ss_pred HHHHhc--CCCCCEEEEEEcccccCc---cccHHHHHHHHhcCCCCCEEEEeCCCCCcchhhcCCceEEEEEeccccccc
Confidence 345543 367899999999999987 44446665422123457899999998876665544444555553
Q ss_pred Eec--------------CCCcCCCCCCCC--HHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEec-CCC-
Q 024487 75 TGK--------------LFHSGLPHKAIN--PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSY-PGG- 136 (267)
Q Consensus 75 ~G~--------------~~Hss~p~~g~n--ai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~-gg~- 136 (267)
+|+ ++|++.+..|+| ++..+++++..+...... +.... ...+ ..+.+++++...- +|.
T Consensus 191 ~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~~~~~~~~~~~~-~~g~~--~~~~-~~~~~~~~~~~~p~~g~n 266 (438)
T PRK08554 191 KGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASHFLRESNVLAVS-LEGKF--LKGN-VVPGEVTLTYLEPGEGEE 266 (438)
T ss_pred ccceeeeeeceeecccCccccccccCCcCchHHHHHHHHHhhcCceEEE-Eeeee--eecC-cccceeEEEEecCCCCcc
Confidence 444 599998766655 577777777655432100 00000 0000 0012222222220 111
Q ss_pred ----------------------------------cccee---CCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhcc
Q 024487 137 ----------------------------------GINQI---PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEK 179 (267)
Q Consensus 137 ----------------------------------~~n~i---p~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~~ 179 (267)
..|++ |++|++++|+|+.| ++.+++.++|++.+.+...
T Consensus 267 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~n~~~i~~g~a~~~~DiR~~~-~~~e~v~~~i~~~~~~~~~---- 341 (438)
T PRK08554 267 VEVDLGLTRLLKAIVPLVRAPIKAEKYSDYGVSITPNVYSFAEGKHVLKLDIRAMS-YSKEDIERTLKEVLEFNLP---- 341 (438)
T ss_pred ccccccHHHHHHHHHHHHHHhhccccccccceeeccceEEecCCeEEEEEEEEecC-CCHHHHHHHHHHHhhccCC----
Confidence 34455 89999999999987 6888888888877754211
Q ss_pred cccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCC-CccccCCCcchHHHHHHhc---ce
Q 024487 180 LDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHV-NPYSITGTLPLIRELQVRY---ML 255 (267)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~-~~~~~~g~~~~~~~~~~~g---~~ 255 (267)
+.+++++.....++..+++++++++.+++++++ +|.. .+..++|++ +++.+...| +.
T Consensus 342 -----------------~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~~~-~g~~~~~~~~~Ggt-Da~~~~~~Gip~v~ 402 (438)
T PRK08554 342 -----------------EAEVEIRTNEKAGYLFTPPDEEIVKVALRVLKE-LGEDAEPVEGPGAS-DSRYFTPYGVKAID 402 (438)
T ss_pred -----------------CceEEEEeccCCCCcCCCCChHHHHHHHHHHHH-hCCCcEEEecCCch-HHHHHHhcCCCceE
Confidence 234555544455777888999999999999988 6774 345566665 899999889 77
Q ss_pred eeecC
Q 024487 256 FSMSD 260 (267)
Q Consensus 256 f~~~~ 260 (267)
|+|+.
T Consensus 403 ~Gp~~ 407 (438)
T PRK08554 403 FGPKG 407 (438)
T ss_pred ECCCC
Confidence 88854
No 64
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.77 E-value=3.6e-18 Score=127.75 Aligned_cols=109 Identities=27% Similarity=0.375 Sum_probs=92.8
Q ss_pred eeecceEEEEEEEEecCCCcCCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCcccee
Q 024487 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQI 141 (267)
Q Consensus 62 ~g~~G~~~~~i~v~G~~~Hss~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~i 141 (267)
+|++|..+++|+++|+++|+|.|+.|+||+..|++++..|+++..+..-. ....+....+++++.++ +|...|+|
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~----~~~~~~~~~~~~~~~i~-gG~~~n~i 75 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFR----PEEFFPGPPTLNIGSIE-GGTAPNVI 75 (111)
T ss_dssp EEEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTST----HHHCTCTSEEEEEEEEE-EESSTTEE
T ss_pred CcCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccc----cccccccccceeEeecc-cCCcCCEE
Confidence 58999999999999999999999999999999999999999863322100 00112346899999999 99999999
Q ss_pred CCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhh
Q 024487 142 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (267)
Q Consensus 142 p~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~ 175 (267)
|++|++.+++|+.|.++.+++++.+++.+++...
T Consensus 76 p~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~~~~ 109 (111)
T PF07687_consen 76 PDEATLTVDIRYPPGEDLEEIKAEIEAAVEKIAK 109 (111)
T ss_dssp SSEEEEEEEEEESTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCcchHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999988754
No 65
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.46 E-value=1.6e-13 Score=123.68 Aligned_cols=205 Identities=15% Similarity=0.083 Sum_probs=162.4
Q ss_pred CCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCC-CCCeeeeecceEEEEEEEEecCCCcCC-CCC
Q 024487 9 LKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFHSGL-PHK 86 (267)
Q Consensus 9 ~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~-~~~i~~g~~G~~~~~i~v~G~~~Hss~-p~~ 86 (267)
..++++|.+.|++|||.|+ +|+..+.-. ++.+|+.+..+++ .|.|.+...+...+++++.|+..|++. +..
T Consensus 165 ~i~h~~i~~g~s~~Ee~g~---rg~~~~~~a----~f~a~~ay~iDGg~~g~i~~ea~~~~~~~~~~~g~~~h~~~a~~~ 237 (414)
T COG2195 165 EIPHGGIRGGFSPDEEIGG---RGAANKDVA----RFLADFAYTLDGGPVGEIPREAFNAAAVRATIVGPNVHPGSAKGK 237 (414)
T ss_pred cccccCeEEEecchHHhhh---hhhhhccHH----hhhcceeEecCCCccCeeeeeccchheeeeeeeccCcCccchHHH
Confidence 4578999999999999998 798887643 4567899999854 478889999999999999999999985 567
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCCCccccCCCCCCCeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHH
Q 024487 87 AINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166 (267)
Q Consensus 87 g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l 166 (267)
.+||+..+.++...+... ..+ ..++.+.|..+ .+...|.|.+++.+.+.+|...........+.+
T Consensus 238 ~i~a~~~a~e~~~~~~~~---~~~-----------e~t~~~~Gv~~-~~~~~~~V~~~s~~~~~iR~~d~~~~~s~~~~~ 302 (414)
T COG2195 238 MINALLLAAEFILELPLE---EVP-----------ELTEGPEGVYH-LGDSTNSVEETSLNLAIIRDFDNLLFRARKDSM 302 (414)
T ss_pred HhhHHHhhhhhhhcCCcc---ccc-----------ccccccceEEe-ccccccchhhhhhhhhhhhhcchhHHHHhHHHH
Confidence 889999888877665432 111 13556677777 888999999999999999999887777777888
Q ss_pred HHHHHHhhhhhcccccCCCcccccCCCCCcceEEEEEecccCCcccCCCCCHHHHHHHHHHHHHhCCCCccccCCCcchH
Q 024487 167 QEYVDDINENIEKLDTRGPVSKYVLPDENIRGSLTLTFDEATNGVACNLDSRGFHVLCKATEEVVGHVNPYSITGTLPLI 246 (267)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~l~~a~~~~~g~~~~~~~~g~~~~~ 246 (267)
++.+++..+++. + ...+++++...||+|..+++++++..+++++++++..+....+.||+. +
T Consensus 303 ~~~~~~~~~~~g---------------~--~~~~~~~~~~~Yp~~~~~~~~~iv~~a~~a~~~l~~~p~v~~i~gGtd-~ 364 (414)
T COG2195 303 KDVVEEMAASLG---------------K--LAGAELEVKDSYPGWKIKPDSPLVDLAKKAYKELGIKPKVKPIHGGTD-G 364 (414)
T ss_pred HHHHHHHHHHhh---------------h--ccceEEEEeccccCcCCCCCchHHHHHHHHHHHhCCCceEEEeecccc-h
Confidence 888887776642 1 145678888889999999999999999999999877766678888884 3
Q ss_pred HHHHHhc
Q 024487 247 RELQVRY 253 (267)
Q Consensus 247 ~~~~~~g 253 (267)
..+...|
T Consensus 365 ~~is~~g 371 (414)
T COG2195 365 GVLSFKG 371 (414)
T ss_pred hhhhccC
Confidence 3444443
No 66
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.49 E-value=4.6e-07 Score=80.91 Aligned_cols=155 Identities=17% Similarity=0.164 Sum_probs=106.7
Q ss_pred CCCCccEEEEEEeccccCCCCcccHHHHHHc--cccCcCCCC--cEEEecCCC----C----CeeeeecceEEEEEEEEe
Q 024487 9 LKLKSTVIAVFIASEENSAITGVGVDALVKD--GLLNKLKGG--PLYWIDTAD----K----QPCIGTGGMIPWKLHVTG 76 (267)
Q Consensus 9 ~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~--~~~~~~~~d--~~i~~e~~~----~----~i~~g~~G~~~~~i~v~G 76 (267)
-...|||.|+.+||||..+ +|++..+.. ++.++++.+ .+|..+.+. | .+++|..|.+-.-.-|.|
T Consensus 159 ~~~~GNlLf~a~pdEE~~s---~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~f~vvG 235 (553)
T COG4187 159 TDRQGNLLFMAVPDEEVES---RGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVG 235 (553)
T ss_pred CCCCCcEEEEeccchhhhc---ccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEeccchhhcceeEEEe
Confidence 4678999999999999988 788877754 222233333 445555321 1 467899999999999999
Q ss_pred cCCCcCCCCCCCCHHHHHHHHHHHHHHh--hccCCCCCCccccCCCCCCCeeeeEEEecCCCccce-eCCeeEEEEEEEe
Q 024487 77 KLFHSGLPHKAINPLELAMEALKVIQTR--FYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQ-IPGECTVSGDVRL 153 (267)
Q Consensus 77 ~~~Hss~p~~g~nai~~~~~~i~~l~~~--~~~~~~~~~~~~~~~~~~~~t~~~~~i~~gg~~~n~-ip~~a~~~~diR~ 153 (267)
...|.|.|..|+||-..++.+...|+.. +.++.+. .--.+|+.+....++ ...|| +|.++++.+|+=+
T Consensus 236 ~etHvG~~f~Gvnan~maSei~~~le~N~~l~dr~~G------e~t~PPs~L~qkDlK---e~Y~VqTp~~a~~~fN~l~ 306 (553)
T COG4187 236 CETHVGYPFEGVNANFMASEITRRLELNADLADRVDG------EITPPPSCLEQKDLK---ESYNVQTPERAWLYFNWLY 306 (553)
T ss_pred eccccCCcccCCCHHHHHHHHHHHhhcChhhhhhhCC------eeCCCcHhhhhhhhh---hhccccCcchhhhhheehh
Confidence 9999999999999999999999887642 1122111 011112223333333 33454 6889999999966
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhh
Q 024487 154 TPFYNVTDVMKRLQEYVDDINEN 176 (267)
Q Consensus 154 ~p~~~~~~v~~~l~~~i~~~~~~ 176 (267)
. ..+.+++.+.+++..+..+++
T Consensus 307 h-~~ta~~~~d~l~~~a~~A~~e 328 (553)
T COG4187 307 H-SRTAKELFDRLKEEAETAAEE 328 (553)
T ss_pred h-cCCHHHHHHHHHHHHHHHHHH
Confidence 5 788888888888776555443
No 67
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=97.41 E-value=7.8e-05 Score=60.33 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=44.6
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcc-cHHHHHHccccCcCCCCcEEEecCCCCCe
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGV-GVDALVKDGLLNKLKGGPLYWIDTADKQP 60 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~-Ga~~l~~~~~~~~~~~d~~i~~e~~~~~i 60 (267)
+.|++.+.+++++|.|+|++|||+|+ . |++++++++....+++|++++.|++....
T Consensus 49 ~~l~~~~~~~~~~i~~~~~~~EE~g~---~~g~~~l~~~~~~~~~~~~~~~~~e~~~~~~ 105 (189)
T PF01546_consen 49 KALKESGDDLPGNIIFLFTPDEEIGS---IGGAKHLLEEGAFFGLHPDYVIIGEPTGKGG 105 (189)
T ss_dssp HHHHHTTTTCSSEEEEEEESTCCGTS---TTHHHHHHHHCEEEEEEESEEEECECETTSE
T ss_pred HHHHhccccccccccccccccccCCC---cchhhhhhhhccccccccccccccccccccc
Confidence 45666778999999999999999998 5 99999988533344578888888876544
No 68
>PRK09864 putative peptidase; Provisional
Probab=92.92 E-value=0.12 Score=46.54 Aligned_cols=39 Identities=23% Similarity=0.163 Sum_probs=33.1
Q ss_pred CCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCC
Q 024487 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (267)
Q Consensus 11 ~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~ 57 (267)
++.+|+++|++.||.|. +||+.... .++||.+|+.|.+.
T Consensus 193 ~~~~vy~v~TvQEEvGl---rGA~~aa~-----~i~PDiaIavDvt~ 231 (356)
T PRK09864 193 PEITLYGVGSVEEEVGL---RGAQTSAE-----HIKPDVVIVLDTAV 231 (356)
T ss_pred CCCeEEEEEEcchhcch---HHHHHHHh-----cCCCCEEEEEeccc
Confidence 78999999999999998 89988763 35789999999654
No 69
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=92.91 E-value=0.12 Score=46.52 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCCC
Q 024487 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (267)
Q Consensus 10 ~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~~ 57 (267)
+++.+|+++|++.||.|. +||+.... .++||.+|+.|.+.
T Consensus 197 ~~~~~l~~~~tvqEEvG~---rGA~~aa~-----~i~pD~aI~vDv~~ 236 (350)
T TIGR03107 197 ELPNTLIAGANVQEEVGL---RGAHVSTT-----KFNPDIFFAVDCSP 236 (350)
T ss_pred CCCceEEEEEEChhhcCc---hhhhhHHh-----hCCCCEEEEEecCC
Confidence 467899999999999998 89987653 35789999999654
No 70
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=92.43 E-value=0.052 Score=43.51 Aligned_cols=51 Identities=27% Similarity=0.257 Sum_probs=36.8
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT 55 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~ 55 (267)
+.|++.+.+++++|+|+|..+||.|. .|++++++.......+..++|..|.
T Consensus 39 r~l~~~~~~~~~~i~fv~~~~EE~gl---~GS~~~~~~~~~~~~~~~~~inlD~ 89 (179)
T PF04389_consen 39 RVLKELKPQPKRTIRFVFFDGEEQGL---LGSRAFVEHDHEELDNIAAVINLDM 89 (179)
T ss_dssp HHHHHSTHSSSEEEEEEEESSGGGTS---HHHHHHHHHHHCHHHHEEEEEEECS
T ss_pred HHHHHhhcccCccEEEEEecccccCc---cchHHHHHhhhcccccceeEEeccc
Confidence 56777777789999999999999998 8999999732111112346666664
No 71
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=92.23 E-value=0.13 Score=45.08 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=30.6
Q ss_pred CCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCC
Q 024487 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA 56 (267)
Q Consensus 10 ~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~ 56 (267)
.++.+|+++|++.||.|. +|+...... ++||.+|+.|.+
T Consensus 153 ~~~~~v~~v~tvqEEvG~---rGA~~aa~~-----i~PD~ai~vD~~ 191 (292)
T PF05343_consen 153 ELDVDVYFVFTVQEEVGL---RGAKTAAFR-----IKPDIAIAVDVT 191 (292)
T ss_dssp S-SSEEEEEEESSCTTTS---HHHHHHHHH-----H-CSEEEEEEEE
T ss_pred CCCceEEEEEEeeeeecC---cceeecccc-----cCCCEEEEEeee
Confidence 356999999999999998 899987643 468899888743
No 72
>PRK09961 exoaminopeptidase; Provisional
Probab=91.96 E-value=0.2 Score=44.90 Aligned_cols=39 Identities=26% Similarity=0.200 Sum_probs=32.8
Q ss_pred CCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCC
Q 024487 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA 56 (267)
Q Consensus 10 ~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~ 56 (267)
+++.+|+++|+..||.|. +|++.... .++||.+|+.|.+
T Consensus 185 ~~~~~v~~~~tvqEEvG~---rGa~~aa~-----~i~pd~~I~vDv~ 223 (344)
T PRK09961 185 ELPAEVWLVASSSEEVGL---RGGQTATR-----AVSPDVAIVLDTA 223 (344)
T ss_pred CCCceEEEEEEcccccch---HHHHHHHh-----ccCCCEEEEEecc
Confidence 468999999999999998 89988763 3578999999865
No 73
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=90.72 E-value=0.22 Score=44.65 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=33.8
Q ss_pred cCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCC
Q 024487 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA 56 (267)
Q Consensus 8 ~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~ 56 (267)
+.+++.+++++|++.||.|. +|++.... .++||.+|..+.+
T Consensus 197 ~~~~~~~vy~v~tvqEEVGl---rGA~~~a~-----~i~pd~aiavd~~ 237 (355)
T COG1363 197 GIELPADVYFVASVQEEVGL---RGAKTSAF-----RIKPDIAIAVDVT 237 (355)
T ss_pred cCCCCceEEEEEecchhhcc---chhhcccc-----ccCCCEEEEEecc
Confidence 46789999999999999997 78877652 4578999988864
No 74
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=86.51 E-value=0.59 Score=41.82 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=27.2
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHc
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD 39 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~ 39 (267)
+.|++. .++++|.|+++++||.|. .|++++++.
T Consensus 156 r~l~~~--~~~~~I~fv~~~~EE~Gl---~GS~~~~~~ 188 (346)
T PRK10199 156 ERLKNV--PTEYGIRFVATSGEEEGK---LGAENLLKR 188 (346)
T ss_pred HHHhhC--CCCCcEEEEEECCcccCc---HHHHHHHHh
Confidence 445544 467899999999999998 899999976
No 75
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=82.35 E-value=0.84 Score=40.91 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=21.4
Q ss_pred hhhhcccCCCCccEEEEEEeccccCC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSA 27 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~ 27 (267)
+.|++.+..++.+|+++|+++||.|+
T Consensus 196 ~~l~~~~~~~~~~v~~~~t~qEEvG~ 221 (343)
T TIGR03106 196 KAIVEHKVPLPVDVHPLFTITEEVGS 221 (343)
T ss_pred HHHHhcCCCCCceEEEEEECCcccCc
Confidence 45666666688999999999999994
No 76
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=59.84 E-value=21 Score=33.68 Aligned_cols=43 Identities=7% Similarity=-0.082 Sum_probs=33.5
Q ss_pred CeeeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 024487 124 STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 173 (267)
Q Consensus 124 ~t~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~ 173 (267)
+|+|++.++ ..-+.+++.+++|++++.+.+++.+++++..+..
T Consensus 344 ~S~Nlg~v~-------~~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~~~ 386 (485)
T PRK15026 344 TSLNVGVVT-------MTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLA 386 (485)
T ss_pred eeeEEEEEE-------EeCCEEEEEEEecCCCchHHHHHHHHHHHHHHHc
Confidence 566666665 3457899999999999999888888888775543
No 77
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=52.71 E-value=12 Score=34.35 Aligned_cols=35 Identities=34% Similarity=0.289 Sum_probs=29.0
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccc
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGL 41 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~ 41 (267)
+.|+++ .++.+|.|++...||.|. .|+++++....
T Consensus 241 r~l~~~--~p~~~v~f~~~~aEE~Gl---~GS~~~~~~~~ 275 (435)
T COG2234 241 RVLKGN--PPKRTVRFVAFGAEESGL---LGSEAYVKRLS 275 (435)
T ss_pred HHHhcC--CCCceEEEEEecchhhcc---cccHHHHhcCC
Confidence 456655 489999999999999998 89999997643
No 78
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=42.36 E-value=14 Score=36.97 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=38.6
Q ss_pred hhhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHccccCcCCCCcEEEecCC
Q 024487 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA 56 (267)
Q Consensus 2 ~~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~~~~~~~~~d~~i~~e~~ 56 (267)
|.+.+..-.++.+|+|.|-..||.+. .|++.++..+.+.+ ++.+++..|.+
T Consensus 176 Rv~s~~~~~l~~~vVFLfNgaEE~~L---~gsH~FItQH~w~~-~~ka~INLea~ 226 (834)
T KOG2194|consen 176 RVLSKSDKLLTHSVVFLFNGAEESGL---LGSHAFITQHPWSK-NIKAVINLEAA 226 (834)
T ss_pred HHhhcCCCcccccEEEEecCcccchh---hhcccceecChhhh-hhheEEecccc
Confidence 45566666679999999999999997 89999998765543 34577777743
No 79
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=39.81 E-value=22 Score=35.12 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=29.3
Q ss_pred hhhcccCCCCccEEEEEEeccccCCCCcccHHHHHHc
Q 024487 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD 39 (267)
Q Consensus 3 ~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~~l~~~ 39 (267)
.|++.+.+|.++|+|+.-..||.|. .|+-.++++
T Consensus 387 ~~~k~gwrP~RtI~F~sWdAeEfGl---iGStE~~E~ 420 (702)
T KOG2195|consen 387 KLKKRGWRPRRTILFASWDAEEFGL---LGSTEWAEE 420 (702)
T ss_pred HHHHcCCCccceEEEEEccchhccc---cccHHHHHH
Confidence 4567789999999999999999998 688888764
No 80
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=35.16 E-value=1.5e+02 Score=20.51 Aligned_cols=29 Identities=0% Similarity=0.096 Sum_probs=24.5
Q ss_pred eeEEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 024487 144 ECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172 (267)
Q Consensus 144 ~a~~~~diR~~p~~~~~~v~~~l~~~i~~ 172 (267)
+.+..+-||.+++.+..++.++|.+.++-
T Consensus 8 ~f~~tIaIrvp~~~~y~~L~~ki~~kLkl 36 (80)
T cd06406 8 HFKYTVAIQVARGLSYATLLQKISSKLEL 36 (80)
T ss_pred EEEEEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 45567889999999999999999888763
No 81
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=34.91 E-value=28 Score=27.83 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=14.2
Q ss_pred chHHHHHHhcceeeecC
Q 024487 244 PLIRELQVRYMLFSMSD 260 (267)
Q Consensus 244 ~~~~~~~~~g~~f~~~~ 260 (267)
..+..|.++||+|||=.
T Consensus 128 ta~t~LvHHGmifVPlG 144 (203)
T KOG3135|consen 128 TAITQLVHHGMIFVPLG 144 (203)
T ss_pred HHHHHHHhcceEEEecc
Confidence 46788999999999854
No 82
>PRK02813 putative aminopeptidase 2; Provisional
Probab=31.00 E-value=39 Score=31.30 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=28.5
Q ss_pred CccEEEEEEeccccCCCCcccHHH-----HHHc----------cccCcCCCCcEEEecCC
Q 024487 12 KSTVIAVFIASEENSAITGVGVDA-----LVKD----------GLLNKLKGGPLYWIDTA 56 (267)
Q Consensus 12 ~~~I~li~~~dEE~g~~~~~Ga~~-----l~~~----------~~~~~~~~d~~i~~e~~ 56 (267)
+.+++++++..||.|++...||.. ++++ .+...+.+|+++..|.+
T Consensus 252 ~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~s~~IS~Dva 311 (428)
T PRK02813 252 DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALARSFLISADMA 311 (428)
T ss_pred CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCCCeEEEEecc
Confidence 679999999999999832226663 1110 00123567888888754
No 83
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=30.14 E-value=1.9e+02 Score=19.98 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=25.3
Q ss_pred CeeEEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 024487 143 GECTVSGDVRLTPFYNVTDVMKRLQEYVDD 172 (267)
Q Consensus 143 ~~a~~~~diR~~p~~~~~~v~~~l~~~i~~ 172 (267)
-++++++.+|.+++.+..++.+.|-+.+.-
T Consensus 3 Vh~~fTVai~v~~g~~y~~L~~~ls~kL~l 32 (78)
T cd06411 3 VQCAFTVALRAPRGADVSSLRALLSQALPQ 32 (78)
T ss_pred EEEEEEEEEEccCCCCHHHHHHHHHHHhcC
Confidence 368899999999999999988888777764
No 84
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=23.75 E-value=2.7e+02 Score=19.71 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=32.7
Q ss_pred CCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhhhc
Q 024487 142 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE 178 (267)
Q Consensus 142 p~~a~~~~diR~~p~~~~~~v~~~l~~~i~~~~~~~~ 178 (267)
.+.+.+.+.+....+.+..++.+.+++.+++..+.+.
T Consensus 57 ~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~t 93 (108)
T PF03780_consen 57 DGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMT 93 (108)
T ss_pred CcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999999999999999999998888765
No 85
>PHA02448 hypothetical protein
Probab=23.39 E-value=1.5e+02 Score=22.58 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=29.0
Q ss_pred CCCeeeeecceEEEEEEEEecCCCcC---CCCCCCCHHHHHH
Q 024487 57 DKQPCIGTGGMIPWKLHVTGKLFHSG---LPHKAINPLELAM 95 (267)
Q Consensus 57 ~~~i~~g~~G~~~~~i~v~G~~~Hss---~p~~g~nai~~~~ 95 (267)
++.+...+.|.+|+++++.|...-+. .-..|.||+..+.
T Consensus 60 ~glp~~d~~gglwirlt~~g~tr~gygd~~gk~gpnavkeai 101 (192)
T PHA02448 60 NGLPLLDEHGGLWIRLTLCGVTRIGYGDAGGKKGPNAVKEAI 101 (192)
T ss_pred CCCcccccCCCeEEEEEEeccceeeccccCCCcCchHHHHHH
Confidence 46677889999999999998764442 2345789987654
No 86
>PRK06156 hypothetical protein; Provisional
Probab=23.30 E-value=1.9e+02 Score=27.44 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=26.7
Q ss_pred eeeEEEecCCCccceeCCeeEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 024487 126 MKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171 (267)
Q Consensus 126 ~~~~~i~~gg~~~n~ip~~a~~~~diR~~p~~~~~~v~~~l~~~i~ 171 (267)
+++..++ ||...|+||+.|.+. ++..+ .++..+.+.+...
T Consensus 241 ~~l~~~~-gG~~~n~ip~~a~~~--~~~~~---~~~~~~~~~~~~~ 280 (520)
T PRK06156 241 AEIVAMT-GGAFANQIPQTAVAT--LSGGD---PAALAAALQAAAA 280 (520)
T ss_pred eeEEEEE-cCCcCCCCCCccEEE--EecCC---HHHHHHHHHHHHH
Confidence 4566778 999999999999988 44333 3444444544433
No 87
>PRK02256 putative aminopeptidase 1; Provisional
Probab=22.25 E-value=65 Score=30.20 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=21.4
Q ss_pred hhhcccCCCCccEEEEEEeccccCCCCcccHH
Q 024487 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVD 34 (267)
Q Consensus 3 ~L~~~~~~~~~~I~li~~~dEE~g~~~~~Ga~ 34 (267)
+|.+.. .+...++++++..||.|++...||.
T Consensus 271 al~~~~-~~~~~~~~~~~dqEEVGs~ga~gA~ 301 (462)
T PRK02256 271 ALLELE-NPEKTAVVLLVDKEEIGSEGNTGAQ 301 (462)
T ss_pred HHHhcc-cCCCeEEEEEEcccccCCcchhhhc
Confidence 444433 4667999999999999984334444
No 88
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=22.22 E-value=86 Score=24.54 Aligned_cols=36 Identities=25% Similarity=0.179 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CCccccCCCcchHHHHH
Q 024487 214 NLDSRGFHVLCKATEEVVGH-VNPYSITGTLPLIRELQ 250 (267)
Q Consensus 214 ~~~~~~v~~l~~a~~~~~g~-~~~~~~~g~~~~~~~~~ 250 (267)
+.+.++++.+.++++++++. ..+..++|++ ++.++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-D~~~~~ 145 (189)
T PF01546_consen 109 DNDPPLVQALQAAAQEVGGEPPEPVASGGGT-DAGFLA 145 (189)
T ss_dssp CTCHHHHHHHHHHHHHTTSSEEEEEEESSSS-THHHHH
T ss_pred cccHHHHHHHHHHHHHHhhccccccceeccc-cchhhh
Confidence 35556999999999998763 4455666665 455555
Done!