Query 024489
Match_columns 267
No_of_seqs 135 out of 1185
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:59:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02608 L-ascorbate peroxidas 100.0 3.6E-81 7.8E-86 568.9 25.9 258 3-262 2-259 (289)
2 PLN02879 L-ascorbate peroxidas 100.0 1.1E-76 2.4E-81 531.2 24.3 247 1-247 1-249 (251)
3 PLN02364 L-ascorbate peroxidas 100.0 2.2E-75 4.9E-80 523.5 24.6 245 3-247 4-249 (250)
4 cd00691 ascorbate_peroxidase A 100.0 7E-73 1.5E-77 508.9 23.9 242 5-246 2-251 (253)
5 PLN03030 cationic peroxidase; 100.0 9.4E-73 2E-77 520.4 18.0 243 7-263 25-324 (324)
6 cd00693 secretory_peroxidase H 100.0 7E-70 1.5E-74 499.7 18.9 242 7-262 2-298 (298)
7 cd00692 ligninase Ligninase an 100.0 1.6E-63 3.6E-68 460.5 22.8 243 16-265 18-289 (328)
8 cd00649 catalase_peroxidase_1 100.0 1.9E-62 4.1E-67 460.5 19.6 251 8-259 32-408 (409)
9 cd00314 plant_peroxidase_like 100.0 5.2E-59 1.1E-63 419.6 20.8 225 18-242 3-255 (255)
10 TIGR00198 cat_per_HPI catalase 100.0 9.9E-59 2.1E-63 459.9 19.0 253 8-261 42-417 (716)
11 PF00141 peroxidase: Peroxidas 100.0 4.3E-59 9.2E-64 414.8 7.8 197 18-225 1-230 (230)
12 PRK15061 catalase/hydroperoxid 100.0 1.5E-56 3.2E-61 442.3 19.4 253 8-261 44-423 (726)
13 cd08201 plant_peroxidase_like_ 100.0 3.5E-53 7.5E-58 379.5 15.6 209 28-242 38-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 3.3E-50 7.1E-55 364.4 20.4 236 4-244 3-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 2.1E-44 4.6E-49 357.7 21.4 236 4-244 422-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 1.1E-43 2.4E-48 351.0 20.8 236 4-244 428-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 5.3E-42 1.1E-46 326.0 17.6 254 7-261 56-434 (730)
18 COG0376 KatG Catalase (peroxid 99.9 2.4E-21 5.3E-26 185.3 15.4 236 4-244 439-725 (730)
19 PF11895 DUF3415: Domain of un 72.5 2.9 6.2E-05 31.4 2.1 22 228-249 2-23 (80)
20 PF09533 DUF2380: Predicted li 36.7 36 0.00077 29.5 3.0 52 110-161 73-131 (188)
21 PRK13859 type IV secretion sys 35.6 23 0.00049 24.4 1.3 30 95-124 9-41 (55)
22 COG2147 RPL19A Ribosomal prote 34.8 45 0.00097 27.9 3.2 24 6-29 23-48 (150)
23 cd00481 Ribosomal_L19e Ribosom 25.9 77 0.0017 26.5 3.1 24 6-29 20-45 (145)
24 PRK12346 transaldolase A; Prov 25.9 70 0.0015 30.1 3.2 58 106-163 168-241 (316)
25 PRK08570 rpl19e 50S ribosomal 25.6 81 0.0017 26.5 3.2 24 6-29 23-48 (150)
26 cd01418 Ribosomal_L19e_A Ribos 24.8 83 0.0018 26.3 3.1 24 6-29 20-45 (145)
27 KOG0400 40S ribosomal protein 23.7 43 0.00093 27.6 1.2 33 136-168 32-65 (151)
28 PRK12309 transaldolase/EF-hand 23.6 99 0.0021 30.0 3.9 57 107-163 174-246 (391)
29 PF02284 COX5A: Cytochrome c o 23.4 1.5E+02 0.0032 23.6 4.1 70 10-88 6-76 (108)
30 cd00957 Transaldolase_TalAB Tr 22.4 1.2E+02 0.0027 28.4 4.2 55 107-161 168-238 (313)
31 cd07922 CarBa CarBa is the A s 21.6 73 0.0016 23.9 2.0 36 209-247 13-59 (81)
32 PF15656 Tox-HDC: Toxin with a 21.5 64 0.0014 26.1 1.8 52 141-195 18-71 (119)
33 cd01417 Ribosomal_L19e_E Ribos 21.4 1E+02 0.0023 26.3 3.1 24 6-29 20-45 (164)
34 PTZ00097 60S ribosomal protein 21.3 1E+02 0.0023 26.5 3.2 24 6-29 21-46 (175)
35 PTZ00411 transaldolase-like pr 21.0 94 0.002 29.5 3.1 57 107-163 180-252 (333)
36 TIGR00874 talAB transaldolase. 20.3 1.5E+02 0.0033 27.9 4.3 58 106-163 167-240 (317)
No 1
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3.6e-81 Score=568.93 Aligned_cols=258 Identities=84% Similarity=1.325 Sum_probs=248.1
Q ss_pred cccccChhHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCccChhhhcccCcCchHHHHHHHHH
Q 024489 3 GSIAIDAEYLKEIEKARRDLRSLISSRSCAPIMLRLAWHDAGTYDAKTRTGGPDGSIRHEQEYAHNANNGLKIAIDLCEG 82 (267)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~aa~~lRl~FHDc~~~d~~~~~gG~dgSi~~~~e~~~~~N~gl~~~~~~i~~ 82 (267)
.-|++|++|+++|+.+|++|+++.+++.++|.||||+||||+|||.++++|||||||++++|+++++|.||++++++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~ 81 (289)
T PLN02608 2 AAPVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEP 81 (289)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HhhhCCcccHHHHHHhhhhhHhHhcCCCcccCCCCCCCCCCCCCCCCCCCCcCCHHHHHHHHHHCCCChhhhhhhccccc
Q 024489 83 VKAKHPRITYADLYQLAGVVAVEVTGGPAIDFAPGRKDSSESPEEGRLPDAAQGVSHLRDIFYRMGLSDKDIVALSGGHT 162 (267)
Q Consensus 83 ik~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~GaHt 162 (267)
||+++|+|||||||++|||+||+.+|||.|+|++||+|+++++++++||+|+.+++++++.|+++||+++|||||+||||
T Consensus 82 iK~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHT 161 (289)
T PLN02608 82 VKAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHT 161 (289)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCccChHHHHHHhhcccCCccccccccccccChhhHHHHHHHhhCHHHHHHHHHHHHHHHHh
Q 024489 163 LGRAHPERSGYEGPWTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPKFRYYVELYAKDEDAFFTDYAASHKKLSE 242 (267)
Q Consensus 163 iG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~~~gl~~l~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~ 242 (267)
||++||.+++|.|+|+.||.+|||+||++|+.++++|+++|+||++|++|++|+.+|+.||.|++.|+++|++||+||++
T Consensus 162 iG~ahc~r~g~~g~~~~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~ 241 (289)
T PLN02608 162 LGRAHPERSGFDGPWTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSE 241 (289)
T ss_pred cccccccCCCCCCCCCCCCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHc
Confidence 99999998888899999999999999999999855699889999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccccccc
Q 024489 243 LGFNPPSLAGIGVKENKFIS 262 (267)
Q Consensus 243 lgv~tg~~g~~~i~~~c~~~ 262 (267)
+||+||++| |+.+....+
T Consensus 242 lgvltg~~G--e~~~~~~~~ 259 (289)
T PLN02608 242 LGFTPPSSA--FKKKSTSTS 259 (289)
T ss_pred CCCCCCCCC--cccccCcch
Confidence 999999998 687766544
No 2
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.1e-76 Score=531.23 Aligned_cols=247 Identities=65% Similarity=1.096 Sum_probs=239.8
Q ss_pred Cc--cccccChhHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCccChhhhcccCcCchHHHHH
Q 024489 1 MV--GSIAIDAEYLKEIEKARRDLRSLISSRSCAPIMLRLAWHDAGTYDAKTRTGGPDGSIRHEQEYAHNANNGLKIAID 78 (267)
Q Consensus 1 ~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~aa~~lRl~FHDc~~~d~~~~~gG~dgSi~~~~e~~~~~N~gl~~~~~ 78 (267)
|+ .+|++..+|.++++.++++|.+++.++.++|.+|||+||||+|||..++.|||||||++.+|+++++|.||+.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~ 80 (251)
T PLN02879 1 MVKKSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVR 80 (251)
T ss_pred CCcccCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHH
Confidence 55 7899999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHhhhCCcccHHHHHHhhhhhHhHhcCCCcccCCCCCCCCCCCCCCCCCCCCcCCHHHHHHHHHHCCCChhhhhhhc
Q 024489 79 LCEGVKAKHPRITYADLYQLAGVVAVEVTGGPAIDFAPGRKDSSESPEEGRLPDAAQGVSHLRDIFYRMGLSDKDIVALS 158 (267)
Q Consensus 79 ~i~~ik~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~ 158 (267)
+|++||+++++|||||||+|||++||+.+|||.|+|++||+|+.+++++++||.|+.+++++++.|+++||+++|||||+
T Consensus 81 ~i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALs 160 (251)
T PLN02879 81 LLDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFGRMGLNDKDIVALS 160 (251)
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCCCCccChHHHHHHhhcccCCccccccccccccChhhHHHHHHHhhCHHHHHHHHHHHHH
Q 024489 159 GGHTLGRAHPERSGYEGPWTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPKFRYYVELYAKDEDAFFTDYAASHK 238 (267)
Q Consensus 159 GaHtiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~~~gl~~l~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~ 238 (267)
||||||++||.+++++|+|+.||.+|||+||++|+.++++|+++|+||++|+.|++|+.+|++||.||++|+++|++||+
T Consensus 161 GaHTiG~ah~~r~g~~g~~d~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~ 240 (251)
T PLN02879 161 GGHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHL 240 (251)
T ss_pred ccccccccccccccCCCCCCCCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999995559988999999999999999999999999999999999999
Q ss_pred HHHhCCCCC
Q 024489 239 KLSELGFNP 247 (267)
Q Consensus 239 Km~~lgv~t 247 (267)
||+++|+.+
T Consensus 241 KL~~lg~~~ 249 (251)
T PLN02879 241 KLSELGFAD 249 (251)
T ss_pred HHHccCCCC
Confidence 999999864
No 3
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=2.2e-75 Score=523.48 Aligned_cols=245 Identities=62% Similarity=1.065 Sum_probs=236.9
Q ss_pred cccccChhHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCccChhhhcccCcCchHHHHHHHHH
Q 024489 3 GSIAIDAEYLKEIEKARRDLRSLISSRSCAPIMLRLAWHDAGTYDAKTRTGGPDGSIRHEQEYAHNANNGLKIAIDLCEG 82 (267)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~aa~~lRl~FHDc~~~d~~~~~gG~dgSi~~~~e~~~~~N~gl~~~~~~i~~ 82 (267)
.+|.++++|-+.++.++++|++++.++.++|.||||+||||+|||.....|||||||.+.+|+++++|.||++++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~i~~ 83 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDP 83 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HhhhCCcccHHHHHHhhhhhHhHhcCCCcccCCCCCCCCCCCCCCCCCCCCcCCHHHHHHHHHH-CCCChhhhhhhcccc
Q 024489 83 VKAKHPRITYADLYQLAGVVAVEVTGGPAIDFAPGRKDSSESPEEGRLPDAAQGVSHLRDIFYR-MGLSDKDIVALSGGH 161 (267)
Q Consensus 83 ik~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~-~Gls~~e~VaL~GaH 161 (267)
||+++++|||||||+||||+||+.+|||.|+|++||+|+++++++++||.|+.+++++++.|++ +||+++|||||+|||
T Consensus 84 ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaH 163 (250)
T PLN02364 84 IREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAH 163 (250)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHHHHhcCCCHHHheeeecce
Confidence 9999999999999999999999999999999999999999999998999999999999999996 699999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCCccChHHHHHHhhcccCCccccccccccccChhhHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 024489 162 TLGRAHPERSGYEGPWTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPKFRYYVELYAKDEDAFFTDYAASHKKLS 241 (267)
Q Consensus 162 tiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~~~gl~~l~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~ 241 (267)
|||++||.++++.|+|+.||.+|||+||++|+.++++|+++|+||++|+.|++|+.+|+.||.|++.|+++|++||+||+
T Consensus 164 TiG~~hc~r~~~~g~~~~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~ 243 (250)
T PLN02364 164 TLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLS 243 (250)
T ss_pred eeccccCCCCCCCCCCCCCCCccchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999985569988899999999999999999999999999999999999999
Q ss_pred hCCCCC
Q 024489 242 ELGFNP 247 (267)
Q Consensus 242 ~lgv~t 247 (267)
++|+.+
T Consensus 244 ~lg~~~ 249 (250)
T PLN02364 244 ELGFAD 249 (250)
T ss_pred ccCCCC
Confidence 999865
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=7e-73 Score=508.87 Aligned_cols=242 Identities=65% Similarity=1.104 Sum_probs=229.8
Q ss_pred cccChhHHHH-HHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCccChhhhcccCcCchHHHHHHHHHH
Q 024489 5 IAIDAEYLKE-IEKARRDLRSLISSRSCAPIMLRLAWHDAGTYDAKTRTGGPDGSIRHEQEYAHNANNGLKIAIDLCEGV 83 (267)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~aa~~lRl~FHDc~~~d~~~~~gG~dgSi~~~~e~~~~~N~gl~~~~~~i~~i 83 (267)
|+||.-|... ++.+|+.|++++++++++|.+|||+||||++||++.+.||||||+++++|+++++|.+|++++++|++|
T Consensus 2 ~~~~~~~~~~~~~~V~~~v~~~~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~i 81 (253)
T cd00691 2 PVVSAAYAAKDLEAARNDIAKLIDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPI 81 (253)
T ss_pred CcccccccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHH
Confidence 8899999765 888999999888899999999999999999999999999999999988999999999998899999999
Q ss_pred hhhCCcccHHHHHHhhhhhHhHhcCCCcccCCCCCCCCCCCC---CCCCCCCCcCCHHHHHHHHHHCCCChhhhhhhccc
Q 024489 84 KAKHPRITYADLYQLAGVVAVEVTGGPAIDFAPGRKDSSESP---EEGRLPDAAQGVSHLRDIFYRMGLSDKDIVALSGG 160 (267)
Q Consensus 84 k~~~p~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~Ga 160 (267)
|+++|+|||||||++||++||+.+|||.|+|++||+|+.++. ++++||.|+.+++++++.|+++||+++|||||+||
T Consensus 82 K~~~~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 82 KKKYPDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 999999999999999999999999999999999999999987 57889999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCCCCccChHHHHHHhhccc----CCccccccccccccChhhHHHHHHHhhCHHHHHHHHHHH
Q 024489 161 HTLGRAHPERSGYEGPWTKEPLKFDNSYFVELLKGES----EGLLKLPTDKALLEDPKFRYYVELYAKDEDAFFTDYAAS 236 (267)
Q Consensus 161 HtiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~~----~gl~~l~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~A 236 (267)
||||++||.++++.|+|..||.+|||+||++|+.+++ +++++|+||+.|+.|++|+.+|+.||.|+++|+++|++|
T Consensus 162 HTiG~a~c~~~~~~g~~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~A 241 (253)
T cd00691 162 HTLGRCHKERSGYDGPWTKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEA 241 (253)
T ss_pred ceeecccccCCCCCCCCCCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHH
Confidence 9999999988888888889999999999999999984 345558999999999999999999999999999999999
Q ss_pred HHHHHhCCCC
Q 024489 237 HKKLSELGFN 246 (267)
Q Consensus 237 m~Km~~lgv~ 246 (267)
|+||+++||.
T Consensus 242 m~Km~~l~v~ 251 (253)
T cd00691 242 HKKLSELGVP 251 (253)
T ss_pred HHHHHhcCCC
Confidence 9999999985
No 5
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=9.4e-73 Score=520.41 Aligned_cols=243 Identities=26% Similarity=0.382 Sum_probs=215.1
Q ss_pred cChhHHHH-HHHHH----HHHH-HHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCccCh---hhhcccCcCchHHHH
Q 024489 7 IDAEYLKE-IEKAR----RDLR-SLISSRSCAPIMLRLAWHDAGTYDAKTRTGGPDGSIRHE---QEYAHNANNGLKIAI 77 (267)
Q Consensus 7 ~~~~~~~~-~~~~~----~~l~-~~~~~~~~aa~~lRl~FHDc~~~d~~~~~gG~dgSi~~~---~e~~~~~N~gl~~~~ 77 (267)
++.+|+.+ |..+. +.|+ ++.+|++++|++|||+||||| ++||||||++. .|+++++|.+| +++
T Consensus 25 L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCf-------v~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf 96 (324)
T PLN03030 25 TRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCF-------VRGCDASILIDGSNTEKTALPNLLL-RGY 96 (324)
T ss_pred CccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhhe-------ecCCceEEeeCCCcccccCCCCcCc-chH
Confidence 67788876 44443 3333 455699999999999999998 89999999984 69999999999 589
Q ss_pred HHHHHHhhh----CC-cccHHHHHHhhhhhHhHhcCCCcccCCCCCCCCCCCC--CCCCCCCCcCCHHHHHHHHHHCCCC
Q 024489 78 DLCEGVKAK----HP-RITYADLYQLAGVVAVEVTGGPAIDFAPGRKDSSESP--EEGRLPDAAQGVSHLRDIFYRMGLS 150 (267)
Q Consensus 78 ~~i~~ik~~----~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~--~~~~lP~p~~~~~~l~~~F~~~Gls 150 (267)
++|+.||++ || +|||||||++|||+||.++|||.|+|++||+|+++|. ...+||.|+.+++++++.|+++||+
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~ 176 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLN 176 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCC
Confidence 999999964 99 9999999999999999999999999999999998875 2358999999999999999999999
Q ss_pred hhhhhhhccccccccccCCCC-----CCCC-------------------------C-------CCCCCCccChHHHHHHh
Q 024489 151 DKDIVALSGGHTLGRAHPERS-----GYEG-------------------------P-------WTKEPLKFDNSYFVELL 193 (267)
Q Consensus 151 ~~e~VaL~GaHtiG~~~~~~~-----~~~g-------------------------~-------~~~tp~~fDN~Yy~~ll 193 (267)
.+|||+|+||||||++||... +|.+ . +..||.+|||+||++|+
T Consensus 177 ~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll 256 (324)
T PLN03030 177 TQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLK 256 (324)
T ss_pred HHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHH
Confidence 999999999999999999521 1110 0 23589999999999999
Q ss_pred hcccCCccccccccccccChhhHHHHHHHhhCH----HHHHHHHHHHHHHHHhCCCCCCCCCcccccccccccc
Q 024489 194 KGESEGLLKLPTDKALLEDPKFRYYVELYAKDE----DAFFTDYAASHKKLSELGFNPPSLAGIGVKENKFISN 263 (267)
Q Consensus 194 ~~~~~gl~~l~sD~~L~~d~~t~~~v~~yA~~~----~~F~~~Fa~Am~Km~~lgv~tg~~g~~~i~~~c~~~n 263 (267)
.++ |+ |+|||+|+.|++|+++|++||.|+ +.|+++|++||+|||++||+||++| ||||+|+..|
T Consensus 257 ~~r--Gl--L~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~G--EIRk~C~~vN 324 (324)
T PLN03030 257 NGR--GI--LESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNG--EIRKVCSAIN 324 (324)
T ss_pred hcC--CC--cCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCC--ceeccccccC
Confidence 998 88 799999999999999999999875 5999999999999999999999998 7999999988
No 6
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=7e-70 Score=499.70 Aligned_cols=242 Identities=37% Similarity=0.582 Sum_probs=212.8
Q ss_pred cChhHHHH----HHH-HHHHHHH-HHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCccCh------hhhcccCcCchH
Q 024489 7 IDAEYLKE----IEK-ARRDLRS-LISSRSCAPIMLRLAWHDAGTYDAKTRTGGPDGSIRHE------QEYAHNANNGLK 74 (267)
Q Consensus 7 ~~~~~~~~----~~~-~~~~l~~-~~~~~~~aa~~lRl~FHDc~~~d~~~~~gG~dgSi~~~------~e~~~~~N~gl~ 74 (267)
++.+|++. +|. +++.|++ +..+++++|++|||+||||+ ++||||||++. +|+++++|.||
T Consensus 2 L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~-------v~GcDaSill~~~~~~~~E~~~~~N~~l- 73 (298)
T cd00693 2 LSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCF-------VRGCDASVLLDSTANNTSEKDAPPNLSL- 73 (298)
T ss_pred CCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhh-------ccCcceeEEecCCCCCchhccCCCCCCc-
Confidence 34556655 333 3555554 45689999999999999998 79999999863 69999999999
Q ss_pred HHHHHHHHHhhh----CC-cccHHHHHHhhhhhHhHhcCCCcccCCCCCCCCCCCCC--CCCCCCCcCCHHHHHHHHHHC
Q 024489 75 IAIDLCEGVKAK----HP-RITYADLYQLAGVVAVEVTGGPAIDFAPGRKDSSESPE--EGRLPDAAQGVSHLRDIFYRM 147 (267)
Q Consensus 75 ~~~~~i~~ik~~----~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~--~~~lP~p~~~~~~l~~~F~~~ 147 (267)
+++++|+.||++ || +|||||||++||++||+.+|||.|+|++||+|+..+.+ .++||.|+.+++++++.|+++
T Consensus 74 ~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~ 153 (298)
T cd00693 74 RGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASK 153 (298)
T ss_pred chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHc
Confidence 589999999864 89 99999999999999999999999999999999987764 368999999999999999999
Q ss_pred CCChhhhhhhccccccccccCC----C-CCCCC--------------------CC----------C-CCCCccChHHHHH
Q 024489 148 GLSDKDIVALSGGHTLGRAHPE----R-SGYEG--------------------PW----------T-KEPLKFDNSYFVE 191 (267)
Q Consensus 148 Gls~~e~VaL~GaHtiG~~~~~----~-~~~~g--------------------~~----------~-~tp~~fDN~Yy~~ 191 (267)
||+++|||||+||||||++||. | ++|.| |+ + .||.+|||+||++
T Consensus 154 G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~ 233 (298)
T cd00693 154 GLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKN 233 (298)
T ss_pred CCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHH
Confidence 9999999999999999999995 2 23321 12 1 7899999999999
Q ss_pred HhhcccCCccccccccccccChhhHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCCCCccccccccccc
Q 024489 192 LLKGESEGLLKLPTDKALLEDPKFRYYVELYAKDEDAFFTDYAASHKKLSELGFNPPSLAGIGVKENKFIS 262 (267)
Q Consensus 192 ll~~~~~gl~~l~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~lgv~tg~~g~~~i~~~c~~~ 262 (267)
|+.++ |+ |+||++|+.|++|+.+|++||.||+.|+++|+.||+||+++||+||++| ||||+|+..
T Consensus 234 l~~~~--gl--L~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~G--eiR~~C~~~ 298 (298)
T cd00693 234 LLAGR--GL--LTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQG--EIRKNCRVV 298 (298)
T ss_pred HHhcc--cC--ccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCC--ccCCccccC
Confidence 99997 87 7999999999999999999999999999999999999999999999998 799999863
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.6e-63 Score=460.53 Aligned_cols=243 Identities=29% Similarity=0.436 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHh-CCCc---hHHHHHHHhhhcCCCC-----CCCCCCCCCCCccCh--hhhcccCcCchHHHHHHHHHHh
Q 024489 16 EKARRDLRSLIS-SRSC---APIMLRLAWHDAGTYD-----AKTRTGGPDGSIRHE--QEYAHNANNGLKIAIDLCEGVK 84 (267)
Q Consensus 16 ~~~~~~l~~~~~-~~~~---aa~~lRl~FHDc~~~d-----~~~~~gG~dgSi~~~--~e~~~~~N~gl~~~~~~i~~ik 84 (267)
..++++|++.+. +..| |+.||||+||||++|| ...+.|||||||++. .|+++++|.||+.+++.+++++
T Consensus 18 ~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~~~ 97 (328)
T cd00692 18 FDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRPFH 97 (328)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHHHH
Confidence 346788887764 5555 5679999999999999 467889999999874 5899999999987778888877
Q ss_pred hhCCcccHHHHHHhhhhhHhHh-cCCCcccCCCCCCCCCCCCCCCCCCCCcCCHHHHHHHHHHCCCChhhhhhhcccccc
Q 024489 85 AKHPRITYADLYQLAGVVAVEV-TGGPAIDFAPGRKDSSESPEEGRLPDAAQGVSHLRDIFYRMGLSDKDIVALSGGHTL 163 (267)
Q Consensus 85 ~~~p~VS~ADiialAa~~av~~-~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~GaHti 163 (267)
++++ |||||||+|||++||+. .|||.|+|++||+|++++.++++||.|+.+++++++.|+++||+++|||+|+|||||
T Consensus 98 e~~c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLsGAHTi 176 (328)
T cd00692 98 QKHN-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARFADAGFSPDELVALLAAHSV 176 (328)
T ss_pred HhcC-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhcccccc
Confidence 7765 99999999999999996 599999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCC-CCCCCCCccChHHHHHHh-hccc---------------CCccccccccccccChhhHHHHHHHhhCH
Q 024489 164 GRAHPERSGYEG-PWTKEPLKFDNSYFVELL-KGES---------------EGLLKLPTDKALLEDPKFRYYVELYAKDE 226 (267)
Q Consensus 164 G~~~~~~~~~~g-~~~~tp~~fDN~Yy~~ll-~~~~---------------~gl~~l~sD~~L~~d~~t~~~v~~yA~~~ 226 (267)
|++|.....++| +|+.||.+|||+||++++ .+++ +|+++|+||++|+.|++|+.+|++||+||
T Consensus 177 G~a~~~Dps~~g~p~D~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq 256 (328)
T cd00692 177 AAQDFVDPSIAGTPFDSTPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQ 256 (328)
T ss_pred cccCCCCCCCCCCCCCCCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCH
Confidence 999965444555 789999999999999987 4432 25678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCccccccccccccCC
Q 024489 227 DAFFTDYAASHKKLSELGFNPPSLAGIGVKENKFISNLN 265 (267)
Q Consensus 227 ~~F~~~Fa~Am~Km~~lgv~tg~~g~~~i~~~c~~~n~~ 265 (267)
++|+++|++||+||+++||... ...+|...+..
T Consensus 257 ~~f~~~Fa~Am~KLs~lgv~~~------~l~dcs~v~p~ 289 (328)
T cd00692 257 AKMNAAFAAAMLKLSLLGQDNI------SLTDCSDVIPP 289 (328)
T ss_pred HHHHHHHHHHHHHHHcCCCCcc------hhccCcccCCC
Confidence 9999999999999999999744 34588776643
No 8
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.9e-62 Score=460.50 Aligned_cols=251 Identities=36% Similarity=0.576 Sum_probs=228.8
Q ss_pred ChhHHHH-----HHHHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CCccChhhhcccCcCc
Q 024489 8 DAEYLKE-----IEKARRDLRSLISSR---------SCAPIMLRLAWHDAGTYDAKTRTGGPD-GSIRHEQEYAHNANNG 72 (267)
Q Consensus 8 ~~~~~~~-----~~~~~~~l~~~~~~~---------~~aa~~lRl~FHDc~~~d~~~~~gG~d-gSi~~~~e~~~~~N~g 72 (267)
+.+|.++ ++.+|++|++++++. .++|.+|||+|||++|||.+++.||++ |+|+|++|.+++.|.|
T Consensus 32 ~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~g 111 (409)
T cd00649 32 DFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVN 111 (409)
T ss_pred CCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhh
Confidence 4577777 466899999999864 699999999999999999999999998 7999999999999999
Q ss_pred hHHHHHHHHHHhhhCC-cccHHHHHHhhhhhHhHhcCCCcccCCCCCCCCCCCC--------------------------
Q 024489 73 LKIAIDLCEGVKAKHP-RITYADLYQLAGVVAVEVTGGPAIDFAPGRKDSSESP-------------------------- 125 (267)
Q Consensus 73 l~~~~~~i~~ik~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~-------------------------- 125 (267)
|++++.++++||+++| .||+||+|+||+++|||.+|||.|+|..||.|+..+.
T Consensus 112 L~~a~~~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~p 191 (409)
T cd00649 112 LDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENP 191 (409)
T ss_pred HHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccc
Confidence 9999999999999998 7999999999999999999999999999999996532
Q ss_pred ------------CCC--CCCCCcCCHHHHHHHHHHCCCChhhhhhh-ccccccccccCCC--------------------
Q 024489 126 ------------EEG--RLPDAAQGVSHLRDIFYRMGLSDKDIVAL-SGGHTLGRAHPER-------------------- 170 (267)
Q Consensus 126 ------------~~~--~lP~p~~~~~~l~~~F~~~Gls~~e~VaL-~GaHtiG~~~~~~-------------------- 170 (267)
+++ .||.|..++.+|++.|.+|||+.+||||| +||||||++||..
T Consensus 192 l~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLg 271 (409)
T cd00649 192 LAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLG 271 (409)
T ss_pred hhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhc
Confidence 334 69999999999999999999999999999 5999999999942
Q ss_pred ---------------CCCCCCCCCCCCccChHHHHHHhhccc--------------------------------CCcccc
Q 024489 171 ---------------SGYEGPWTKEPLKFDNSYFVELLKGES--------------------------------EGLLKL 203 (267)
Q Consensus 171 ---------------~~~~g~~~~tp~~fDN~Yy~~ll~~~~--------------------------------~gl~~l 203 (267)
++++|+|+.||.+|||+||++|+..+| +++++|
T Consensus 272 w~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL 351 (409)
T cd00649 272 WKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMML 351 (409)
T ss_pred ccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccc
Confidence 357789999999999999999998432 155679
Q ss_pred ccccccccChhhHHHHHHHhhCHHHHHHHHHHHHHHH--HhCCCCCCCCCcccccccc
Q 024489 204 PTDKALLEDPKFRYYVELYAKDEDAFFTDYAASHKKL--SELGFNPPSLAGIGVKENK 259 (267)
Q Consensus 204 ~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km--~~lgv~tg~~g~~~i~~~c 259 (267)
+||++|+.|++|+.+|++||.|++.|+++|++||+|| +.+|+++++.|+ ||++..
T Consensus 352 ~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g~-~~p~~~ 408 (409)
T cd00649 352 TTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLGP-EVPEED 408 (409)
T ss_pred hhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcCC-CCCcCc
Confidence 9999999999999999999999999999999999999 699999999999 999764
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=5.2e-59 Score=419.60 Aligned_cols=225 Identities=47% Similarity=0.716 Sum_probs=204.4
Q ss_pred HHHHHHHHH-hCCCchHHHHHHHhhhcCCCCCCC-CCCCCCCCccChhhhcccCcCchHHHHHHHHHHhhhCC---cccH
Q 024489 18 ARRDLRSLI-SSRSCAPIMLRLAWHDAGTYDAKT-RTGGPDGSIRHEQEYAHNANNGLKIAIDLCEGVKAKHP---RITY 92 (267)
Q Consensus 18 ~~~~l~~~~-~~~~~aa~~lRl~FHDc~~~d~~~-~~gG~dgSi~~~~e~~~~~N~gl~~~~~~i~~ik~~~p---~VS~ 92 (267)
++.+|...+ +++.+++++|||+||||++|+.++ ..|||||||++.+|+++|+|.||.+++++|++||++++ +|||
T Consensus 3 v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~~~~vS~ 82 (255)
T cd00314 3 IKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDGGNPVSR 82 (255)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCCCCcccH
Confidence 455665544 488999999999999999999877 77899999999999999999999889999999999985 8999
Q ss_pred HHHHHhhhhhHhHhc--CCCcccCCCCCCCCC-----CCCCCCCCCCCcCCHHHHHHHHHHCCCChhhhhhhc-ccccc-
Q 024489 93 ADLYQLAGVVAVEVT--GGPAIDFAPGRKDSS-----ESPEEGRLPDAAQGVSHLRDIFYRMGLSDKDIVALS-GGHTL- 163 (267)
Q Consensus 93 ADiialAa~~av~~~--GGP~~~v~~GR~D~~-----~s~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~-GaHti- 163 (267)
||||++|+++||+.+ |||.|+|++||+|+. .+.|.+++|.|..+++++++.|+++||+++|||||+ |+||+
T Consensus 83 ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti~ 162 (255)
T cd00314 83 ADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHTLG 162 (255)
T ss_pred HHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCeecc
Confidence 999999999999999 999999999999998 455778899999999999999999999999999999 99999
Q ss_pred ccccCCCCCCC--CCCCCCCCccChHHHHHHhhcccC------------CccccccccccccChhhHHHHHHHhhCHHHH
Q 024489 164 GRAHPERSGYE--GPWTKEPLKFDNSYFVELLKGESE------------GLLKLPTDKALLEDPKFRYYVELYAKDEDAF 229 (267)
Q Consensus 164 G~~~~~~~~~~--g~~~~tp~~fDN~Yy~~ll~~~~~------------gl~~l~sD~~L~~d~~t~~~v~~yA~~~~~F 229 (267)
|++||..++.. ++|+.||.+|||+||++|+.++|+ ++.+|+||+.|+.|++|+.+|++||.|+++|
T Consensus 163 G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f 242 (255)
T cd00314 163 GKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKF 242 (255)
T ss_pred CcccCCCCCcccCCCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHH
Confidence 99999765543 578899999999999999998743 2344899999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 024489 230 FTDYAASHKKLSE 242 (267)
Q Consensus 230 ~~~Fa~Am~Km~~ 242 (267)
+++|++||+||++
T Consensus 243 ~~~Fa~a~~Km~~ 255 (255)
T cd00314 243 FEDFAKAWIKMVN 255 (255)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999974
No 10
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=9.9e-59 Score=459.85 Aligned_cols=253 Identities=34% Similarity=0.557 Sum_probs=228.3
Q ss_pred ChhHHHHHHH-----HHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CCccChhhhcccCcCc
Q 024489 8 DAEYLKEIEK-----ARRDLRSLISSR---------SCAPIMLRLAWHDAGTYDAKTRTGGPD-GSIRHEQEYAHNANNG 72 (267)
Q Consensus 8 ~~~~~~~~~~-----~~~~l~~~~~~~---------~~aa~~lRl~FHDc~~~d~~~~~gG~d-gSi~~~~e~~~~~N~g 72 (267)
+-||.+++++ +|++|++++++. .++|.+|||+||+++|||.+++.||++ |+|+|++|.+|+.|.+
T Consensus 42 ~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~ 121 (716)
T TIGR00198 42 DFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVN 121 (716)
T ss_pred CccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhh
Confidence 4688888655 899999999874 699999999999999999999999996 7999999999999999
Q ss_pred hHHHHHHHHHHhhhCC-cccHHHHHHhhhhhHhHhcCCCcccCCCCCCCCCCCC--------------------------
Q 024489 73 LKIAIDLCEGVKAKHP-RITYADLYQLAGVVAVEVTGGPAIDFAPGRKDSSESP-------------------------- 125 (267)
Q Consensus 73 l~~~~~~i~~ik~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~-------------------------- 125 (267)
|+++..++++||++|| .|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 122 Ldka~~lL~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~ 201 (716)
T TIGR00198 122 LDKARRLLWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPL 201 (716)
T ss_pred HHHHHHHHHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccc
Confidence 9999999999999999 8999999999999999999999999999999994321
Q ss_pred -----------CCC--CCCCCcCCHHHHHHHHHHCCCChhhhhhhc-cccccccccCC----------------------
Q 024489 126 -----------EEG--RLPDAAQGVSHLRDIFYRMGLSDKDIVALS-GGHTLGRAHPE---------------------- 169 (267)
Q Consensus 126 -----------~~~--~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~-GaHtiG~~~~~---------------------- 169 (267)
+++ .+|.|..++++|++.|+++|||.+|||||+ ||||||++||.
T Consensus 202 a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~ 281 (716)
T TIGR00198 202 AATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGW 281 (716)
T ss_pred hhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcc
Confidence 122 699999999999999999999999999996 99999999994
Q ss_pred -------------CCCCCCCCCCCCCccChHHHHHHhhccc------------------------------CCccccccc
Q 024489 170 -------------RSGYEGPWTKEPLKFDNSYFVELLKGES------------------------------EGLLKLPTD 206 (267)
Q Consensus 170 -------------~~~~~g~~~~tp~~fDN~Yy~~ll~~~~------------------------------~gl~~l~sD 206 (267)
.++++|+|+.||.+|||+||++|++++| ....+|+||
T Consensus 282 ~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SD 361 (716)
T TIGR00198 282 HNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDAD 361 (716)
T ss_pred cCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchh
Confidence 1345688999999999999999998631 024558999
Q ss_pred cccccChhhHHHHHHHhhCHHHHHHHHHHHHHHHH--hCCCCCCCCCcccccccccc
Q 024489 207 KALLEDPKFRYYVELYAKDEDAFFTDYAASHKKLS--ELGFNPPSLAGIGVKENKFI 261 (267)
Q Consensus 207 ~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~--~lgv~tg~~g~~~i~~~c~~ 261 (267)
++|.+|++|+.+|++||.|++.|+++|++||+||+ .+|.+.+|.|+ +|++..+|
T Consensus 362 laL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~y~g~-~vp~~~~~ 417 (716)
T TIGR00198 362 LALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSRYIGP-DVPQEDLI 417 (716)
T ss_pred HHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhhhcCC-CCCccccc
Confidence 99999999999999999999999999999999999 67888899999 99998765
No 11
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=4.3e-59 Score=414.84 Aligned_cols=197 Identities=46% Similarity=0.724 Sum_probs=170.9
Q ss_pred HHHHHHHHHh-CCCchHHHHHHHhhhcCCCCCCCCCCCCCCCccC-hhhhcccCcCchHHHHHHHHHHhhh----CC-cc
Q 024489 18 ARRDLRSLIS-SRSCAPIMLRLAWHDAGTYDAKTRTGGPDGSIRH-EQEYAHNANNGLKIAIDLCEGVKAK----HP-RI 90 (267)
Q Consensus 18 ~~~~l~~~~~-~~~~aa~~lRl~FHDc~~~d~~~~~gG~dgSi~~-~~e~~~~~N~gl~~~~~~i~~ik~~----~p-~V 90 (267)
+|++|++.+. +++++|+||||+||||++| |||||||++ .+|+++++|.||+.++++|+.||++ || +|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcccccCCC
Confidence 4677876655 7999999999999999944 999999975 7899999999998899999999975 88 89
Q ss_pred cHHHHHHhhhhhHhHhcCCCcccCCCCCCCCCCCCCCC--CCCCCcCCHHHHHHHHHHCCCChhhhhhhccccccccccC
Q 024489 91 TYADLYQLAGVVAVEVTGGPAIDFAPGRKDSSESPEEG--RLPDAAQGVSHLRDIFYRMGLSDKDIVALSGGHTLGRAHP 168 (267)
Q Consensus 91 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~--~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~GaHtiG~~~~ 168 (267)
||||||++||++||+.+|||.|+|++||+|+.++++.+ +||.|..+++++++.|+++||+++|||||+||||||++||
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c 154 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHC 154 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESG
T ss_pred CHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceeccccccccee
Confidence 99999999999999999999999999999999999653 5999999999999999999999999999999999999999
Q ss_pred CCCC---------CC--------------C-CCCCCCCccChHHHHHHhhcccCCccccccccccccChhhHHHHHHHhh
Q 024489 169 ERSG---------YE--------------G-PWTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPKFRYYVELYAK 224 (267)
Q Consensus 169 ~~~~---------~~--------------g-~~~~tp~~fDN~Yy~~ll~~~~~gl~~l~sD~~L~~d~~t~~~v~~yA~ 224 (267)
.... ++ . +++ ||.+|||+||++|++++ |+ |+||++|++|++|+.+|++||+
T Consensus 155 ~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~d-tp~~fDN~Yy~~ll~~~--gl--l~SD~~L~~d~~t~~~V~~yA~ 229 (230)
T PF00141_consen 155 SSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLD-TPTVFDNSYYKNLLNGR--GL--LPSDQALLNDPETRPIVERYAQ 229 (230)
T ss_dssp GCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESS-STTS-SSHHHHHHHHTE--EE--EHHHHHHHHSTTHHHHHHHHHH
T ss_pred ccccccccccccccccccceeccCCCcccccccc-CCCcchhHHHHHHhcCC--Cc--CHHHHHHhcCHHHHHHHHHHhc
Confidence 6211 00 0 123 89999999999999987 77 7999999999999999999998
Q ss_pred C
Q 024489 225 D 225 (267)
Q Consensus 225 ~ 225 (267)
|
T Consensus 230 d 230 (230)
T PF00141_consen 230 D 230 (230)
T ss_dssp T
T ss_pred C
Confidence 6
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.5e-56 Score=442.26 Aligned_cols=253 Identities=35% Similarity=0.567 Sum_probs=227.7
Q ss_pred ChhHHHHH-----HHHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CCccChhhhcccCcCc
Q 024489 8 DAEYLKEI-----EKARRDLRSLISSR---------SCAPIMLRLAWHDAGTYDAKTRTGGPD-GSIRHEQEYAHNANNG 72 (267)
Q Consensus 8 ~~~~~~~~-----~~~~~~l~~~~~~~---------~~aa~~lRl~FHDc~~~d~~~~~gG~d-gSi~~~~e~~~~~N~g 72 (267)
+-||.+++ +.+|++|++++++. .++|.+|||+||+++|||.+++.||++ |+|+|++|.+++.|.|
T Consensus 44 ~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~g 123 (726)
T PRK15061 44 DFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVN 123 (726)
T ss_pred CCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhh
Confidence 45788874 55899999999864 689999999999999999999999997 7999999999999999
Q ss_pred hHHHHHHHHHHhhhCC-cccHHHHHHhhhhhHhHhcCCCcccCCCCCCCCCCCCC-------------------------
Q 024489 73 LKIAIDLCEGVKAKHP-RITYADLYQLAGVVAVEVTGGPAIDFAPGRKDSSESPE------------------------- 126 (267)
Q Consensus 73 l~~~~~~i~~ik~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~------------------------- 126 (267)
|+++..++++||+++| .||+||+|+||+.+|||.+|||.++|.+||.|...+..
T Consensus 124 L~ka~~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~ 203 (726)
T PRK15061 124 LDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLEN 203 (726)
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccccccccccccccccccc
Confidence 9999999999999998 89999999999999999999999999999999865321
Q ss_pred --------------C--CCCCCCcCCHHHHHHHHHHCCCChhhhhhhc-cccccccccCCC-------------------
Q 024489 127 --------------E--GRLPDAAQGVSHLRDIFYRMGLSDKDIVALS-GGHTLGRAHPER------------------- 170 (267)
Q Consensus 127 --------------~--~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~-GaHtiG~~~~~~------------------- 170 (267)
+ ..+|+|..++.++++.|.+|||+.+|||||+ ||||||++||..
T Consensus 204 pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgL 283 (726)
T PRK15061 204 PLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGL 283 (726)
T ss_pred chhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhc
Confidence 1 1279999999999999999999999999995 999999999941
Q ss_pred ----------------CCCCCCCCCCCCccChHHHHHHhhccc--------------------------------CCccc
Q 024489 171 ----------------SGYEGPWTKEPLKFDNSYFVELLKGES--------------------------------EGLLK 202 (267)
Q Consensus 171 ----------------~~~~g~~~~tp~~fDN~Yy~~ll~~~~--------------------------------~gl~~ 202 (267)
++++|+|+.||.+|||+||++|+.++| .++++
T Consensus 284 gw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~M 363 (726)
T PRK15061 284 GWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTM 363 (726)
T ss_pred cccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCccc
Confidence 256788999999999999999998742 13567
Q ss_pred cccccccccChhhHHHHHHHhhCHHHHHHHHHHHHHHHHh--CCCCCCCCCcccccccccc
Q 024489 203 LPTDKALLEDPKFRYYVELYAKDEDAFFTDYAASHKKLSE--LGFNPPSLAGIGVKENKFI 261 (267)
Q Consensus 203 l~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~--lgv~tg~~g~~~i~~~c~~ 261 (267)
|+||++|..|++++.+|++||+|+++|+++|++||.||++ +|.+.++.|+ ||++..+|
T Consensus 364 LtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g~-~vp~e~~~ 423 (726)
T PRK15061 364 LTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLGP-EVPKEDLI 423 (726)
T ss_pred ccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcCC-CCCccccc
Confidence 9999999999999999999999999999999999999955 7778899999 99998765
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=3.5e-53 Score=379.53 Aligned_cols=209 Identities=29% Similarity=0.464 Sum_probs=178.8
Q ss_pred CCCchHHHHHHHhhhcCCCCCCCCCCCCCCCccChhhhcccCcCchH--HHHHHHHHHhhhCCcccHHHHHHhhhhhHhH
Q 024489 28 SRSCAPIMLRLAWHDAGTYDAKTRTGGPDGSIRHEQEYAHNANNGLK--IAIDLCEGVKAKHPRITYADLYQLAGVVAVE 105 (267)
Q Consensus 28 ~~~~aa~~lRl~FHDc~~~d~~~~~gG~dgSi~~~~e~~~~~N~gl~--~~~~~i~~ik~~~p~VS~ADiialAa~~av~ 105 (267)
+++++++||||+||||++||...++|||||||++ |..+++|.|++ ..+..++.|+ .++||||||||+|+++||+
T Consensus 38 ~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~--~~~VScADiialAa~~AV~ 113 (264)
T cd08201 38 GRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFY--SPRSSMADLIAMGVVTSVA 113 (264)
T ss_pred CccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeec--cCccCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999998 46778898875 2344445443 2489999999999999999
Q ss_pred hcCCCcccCCCCCCCCCCCCCCCCCCCCcCCHHHHHHHHHHCCCChhhhhhhcc-ccccccccCCCC------CCC--C-
Q 024489 106 VTGGPAIDFAPGRKDSSESPEEGRLPDAAQGVSHLRDIFYRMGLSDKDIVALSG-GHTLGRAHPERS------GYE--G- 175 (267)
Q Consensus 106 ~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~G-aHtiG~~~~~~~------~~~--g- 175 (267)
.||||.|+|++||+|++++.+.+ ||.|+.+++++++.|+++||+++|||+|+| |||||++||..+ ++. +
T Consensus 114 ~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~~~ 192 (264)
T cd08201 114 SCGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVPDTV 192 (264)
T ss_pred HcCCCeecccccCCCcccccccc-CCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcCCccccCCC
Confidence 99999999999999999999886 999999999999999999999999999996 999999999764 333 3
Q ss_pred -CCCCCCCccChHHHHHHhhcccCCccccccccccccChhh-----HHHHHHHhhCHHHHHHHHHHHHHHHHh
Q 024489 176 -PWTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPKF-----RYYVELYAKDEDAFFTDYAASHKKLSE 242 (267)
Q Consensus 176 -~~~~tp~~fDN~Yy~~ll~~~~~gl~~l~sD~~L~~d~~t-----~~~v~~yA~~~~~F~~~Fa~Am~Km~~ 242 (267)
||+.||.+|||+||.++++++++|+|+++...++-+|-+. -..++..| +++.|.+.++..+.||.+
T Consensus 193 ~p~dstp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 193 LQFFDTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNVTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CCCCCCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCccHHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 7999999999999999999998899877555555444322 13445566 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=3.3e-50 Score=364.43 Aligned_cols=236 Identities=27% Similarity=0.430 Sum_probs=205.7
Q ss_pred ccccChhHHHH--HHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCC-ccChhhhcccCcCc--hHHHHH
Q 024489 4 SIAIDAEYLKE--IEKARRDLRSLISSRSCAPIMLRLAWHDAGTYDAKTRTGGPDGS-IRHEQEYAHNANNG--LKIAID 78 (267)
Q Consensus 4 ~~~~~~~~~~~--~~~~~~~l~~~~~~~~~aa~~lRl~FHDc~~~d~~~~~gG~dgS-i~~~~e~~~~~N~g--l~~~~~ 78 (267)
+|+++++++.+ |+.+|++ ++...-+++.+|||+||++.|||.+++.||++|+ |+|++|++|+.|.+ |++++.
T Consensus 3 ~p~~~~~~i~~~di~~lk~~---i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~ 79 (297)
T cd08200 3 IPAVDYELIDDADIAALKAK---ILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLA 79 (297)
T ss_pred CCCCCccccCHHHHHHHHHH---HHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHH
Confidence 68999998774 6666664 4466779999999999999999999999999997 99999999999999 999999
Q ss_pred HHHHHhhhCC-------cccHHHHHHhhhhhHhHhcCC-----CcccCCCCCCCCCCCCC--C---CCCCCCc-------
Q 024489 79 LCEGVKAKHP-------RITYADLYQLAGVVAVEVTGG-----PAIDFAPGRKDSSESPE--E---GRLPDAA------- 134 (267)
Q Consensus 79 ~i~~ik~~~p-------~VS~ADiialAa~~av~~~GG-----P~~~v~~GR~D~~~s~~--~---~~lP~p~------- 134 (267)
++++||+++| .||+||+|+||+..|||.+|| |.++|.+||.|+..+.. + .++|.+.
T Consensus 80 ~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~ 159 (297)
T cd08200 80 VLEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLK 159 (297)
T ss_pred HHHHHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccc
Confidence 9999999997 799999999999999999999 99999999999987642 1 2445332
Q ss_pred -----CCHHHHHHHHHHCCCChhhhhhhcccc-ccccccCCCCCCCCCCCCCCCccChHHHHHHhhcc--c---------
Q 024489 135 -----QGVSHLRDIFYRMGLSDKDIVALSGGH-TLGRAHPERSGYEGPWTKEPLKFDNSYFVELLKGE--S--------- 197 (267)
Q Consensus 135 -----~~~~~l~~~F~~~Gls~~e~VaL~GaH-tiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~--~--------- 197 (267)
...+.|++.|.++|||+.|||||+||| ++|..|. ++ +.|+|+.+|.+|||.||++|++.. |
T Consensus 160 ~~~~~~~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~-~s-~~G~wT~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~ 237 (297)
T cd08200 160 KGYRVPPEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYG-GS-KHGVFTDRPGVLTNDFFVNLLDMSTEWKPADEDDGL 237 (297)
T ss_pred cCCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCC-CC-CCCCCcCCCCccccHHHHHHhcccceeeecCCCCCc
Confidence 234679999999999999999999997 7999886 45 469999999999999999999632 1
Q ss_pred -------CCc---cccccccccccChhhHHHHHHHhhC--HHHHHHHHHHHHHHHHhCC
Q 024489 198 -------EGL---LKLPTDKALLEDPKFRYYVELYAKD--EDAFFTDYAASHKKLSELG 244 (267)
Q Consensus 198 -------~gl---~~l~sD~~L~~d~~t~~~v~~yA~~--~~~F~~~Fa~Am~Km~~lg 244 (267)
.|. +++++|..|.+|++.+++|+.||+| ++.|++||++||.|+.++.
T Consensus 238 ~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 238 FEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred eeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 122 2378999999999999999999998 9999999999999999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2.1e-44 Score=357.75 Aligned_cols=236 Identities=27% Similarity=0.413 Sum_probs=201.7
Q ss_pred ccccChhHHHH-HHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCC-ccChhhhcccCc--CchHHHHHH
Q 024489 4 SIAIDAEYLKE-IEKARRDLRSLISSRSCAPIMLRLAWHDAGTYDAKTRTGGPDGS-IRHEQEYAHNAN--NGLKIAIDL 79 (267)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~aa~~lRl~FHDc~~~d~~~~~gG~dgS-i~~~~e~~~~~N--~gl~~~~~~ 79 (267)
+|+++++++++ |+.+++ +++.+.-+++.+||++||++.|||.+++.||++|+ |++++|++++.| .||.+++.+
T Consensus 422 ~p~~~~~~v~~di~~lk~---~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~ 498 (716)
T TIGR00198 422 LPPVDYTLSEGDIKELKQ---QILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAV 498 (716)
T ss_pred CCCCCchhHHHHHHHHHH---HHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHH
Confidence 68898888722 333333 45567778999999999999999999999999996 999999999999 899999999
Q ss_pred HHHHhhhCC--cccHHHHHHhhhhhHhHhc---CCC--cccCCCCCCCCCCCC--CCCCCC---C------------CcC
Q 024489 80 CEGVKAKHP--RITYADLYQLAGVVAVEVT---GGP--AIDFAPGRKDSSESP--EEGRLP---D------------AAQ 135 (267)
Q Consensus 80 i~~ik~~~p--~VS~ADiialAa~~av~~~---GGP--~~~v~~GR~D~~~s~--~~~~lP---~------------p~~ 135 (267)
+++||+++| .||.||+|+||+.+|||.+ ||| .++|..||.|++... +++.+| . ...
T Consensus 499 Le~Ik~~f~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~ 578 (716)
T TIGR00198 499 LEKIQAEFAKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVT 578 (716)
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCC
Confidence 999999999 8999999999999999999 897 689999999998764 232222 1 122
Q ss_pred CHHHHHHHHHHCCCChhhhhhhccc-cccccccCCCCCCCCCCCCCCCccChHHHHHHhhcc--c---------------
Q 024489 136 GVSHLRDIFYRMGLSDKDIVALSGG-HTLGRAHPERSGYEGPWTKEPLKFDNSYFVELLKGE--S--------------- 197 (267)
Q Consensus 136 ~~~~l~~~F~~~Gls~~e~VaL~Ga-HtiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~--~--------------- 197 (267)
..+.|++.|.++|||+.|||||+|| |++|++|.. + +.|+|+.+|.+|||.||++|++.. |
T Consensus 579 ~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~-s-~~G~~T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr 656 (716)
T TIGR00198 579 PEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGG-S-KHGVFTDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDR 656 (716)
T ss_pred HHHHHHHHHHhCCCChHHHHheecchhhccccCCC-C-CCCCCcCCCCccccHHHHHHhcCCceeeecCCCCceeeeecC
Confidence 3556899999999999999999998 599999984 3 469999999999999999999732 2
Q ss_pred -CCcccc---ccccccccChhhHHHHHHHhhCH--HHHHHHHHHHHHHHHhCC
Q 024489 198 -EGLLKL---PTDKALLEDPKFRYYVELYAKDE--DAFFTDYAASHKKLSELG 244 (267)
Q Consensus 198 -~gl~~l---~sD~~L~~d~~t~~~v~~yA~~~--~~F~~~Fa~Am~Km~~lg 244 (267)
.|.+++ ++|..|.+|++.+.+|+.||+|+ +.|++||++||.|+.++|
T Consensus 657 ~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ld 709 (716)
T TIGR00198 657 QTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLD 709 (716)
T ss_pred CCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCC
Confidence 133334 78999999999999999999997 899999999999999987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.1e-43 Score=351.00 Aligned_cols=236 Identities=28% Similarity=0.457 Sum_probs=203.9
Q ss_pred ccccChhHHHH--HHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCC-ccChhhhcccCcC--chHHHHH
Q 024489 4 SIAIDAEYLKE--IEKARRDLRSLISSRSCAPIMLRLAWHDAGTYDAKTRTGGPDGS-IRHEQEYAHNANN--GLKIAID 78 (267)
Q Consensus 4 ~~~~~~~~~~~--~~~~~~~l~~~~~~~~~aa~~lRl~FHDc~~~d~~~~~gG~dgS-i~~~~e~~~~~N~--gl~~~~~ 78 (267)
+|+++++++.+ |..+|. +++.+.-..+.+||++||++.|||.+++.||++|+ |+|++|++++.|. +|.+++.
T Consensus 428 ~p~~~~~~~~~~di~~lk~---~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~ 504 (726)
T PRK15061 428 VPAVDHELIDDADIAALKA---KILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLA 504 (726)
T ss_pred CCCCCcccCCHHHHHHHHH---HHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHH
Confidence 78999998775 555544 34566777999999999999999999999999996 9999999999999 9999999
Q ss_pred HHHHHhhhC-------CcccHHHHHHhhhhhHhHhc---CC--CcccCCCCCCCCCCCCCC-----CCCCCCc-------
Q 024489 79 LCEGVKAKH-------PRITYADLYQLAGVVAVEVT---GG--PAIDFAPGRKDSSESPEE-----GRLPDAA------- 134 (267)
Q Consensus 79 ~i~~ik~~~-------p~VS~ADiialAa~~av~~~---GG--P~~~v~~GR~D~~~s~~~-----~~lP~p~------- 134 (267)
++++||+++ |.||.||+|+||+.+|||.+ || |.+||..||.|++...+. .++|...
T Consensus 505 ~LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~ 584 (726)
T PRK15061 505 VLEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLK 584 (726)
T ss_pred HHHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCcccccccc
Confidence 999999997 68999999999999999998 57 999999999999876532 2556532
Q ss_pred -----CCHHHHHHHHHHCCCChhhhhhhcccc-ccccccCCCCCCCCCCCCCCCccChHHHHHHhhcc--c---------
Q 024489 135 -----QGVSHLRDIFYRMGLSDKDIVALSGGH-TLGRAHPERSGYEGPWTKEPLKFDNSYFVELLKGE--S--------- 197 (267)
Q Consensus 135 -----~~~~~l~~~F~~~Gls~~e~VaL~GaH-tiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~--~--------- 197 (267)
...+.|++.|.++|||+.|||||+||| ++|..|. ++ +.|+|+.+|.+|||.||++|++.. |
T Consensus 585 ~~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~-~S-~~G~~T~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ 662 (726)
T PRK15061 585 KGYSVSPEELLVDKAQLLTLTAPEMTVLVGGLRVLGANYG-GS-KHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDEDEEV 662 (726)
T ss_pred ccCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCC-CC-CCCCCcCCCCccccHHHHHHhcCCceeeecCCCCCc
Confidence 234679999999999999999999996 7888885 45 479999999999999999999632 1
Q ss_pred -------CCccc---cccccccccChhhHHHHHHHhhC--HHHHHHHHHHHHHHHHhCC
Q 024489 198 -------EGLLK---LPTDKALLEDPKFRYYVELYAKD--EDAFFTDYAASHKKLSELG 244 (267)
Q Consensus 198 -------~gl~~---l~sD~~L~~d~~t~~~v~~yA~~--~~~F~~~Fa~Am~Km~~lg 244 (267)
.|.++ +++|..|.+|++.|.+|+.||+| ++.|++||++||.|+.++|
T Consensus 663 ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 663 YEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred eeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCC
Confidence 12222 47899999999999999999998 9999999999999999987
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-42 Score=326.01 Aligned_cols=254 Identities=35% Similarity=0.569 Sum_probs=226.1
Q ss_pred cChhHHHHHH-----HHHHHHHHHHhCC---------CchHHHHHHHhhhcCCCCCCCCCCCCC-CCccChhhhcccCcC
Q 024489 7 IDAEYLKEIE-----KARRDLRSLISSR---------SCAPIMLRLAWHDAGTYDAKTRTGGPD-GSIRHEQEYAHNANN 71 (267)
Q Consensus 7 ~~~~~~~~~~-----~~~~~l~~~~~~~---------~~aa~~lRl~FHDc~~~d~~~~~gG~d-gSi~~~~e~~~~~N~ 71 (267)
.+-+|.++++ .++++|++++.+. ..++.+|||+||-++||+..++.||.. |..+|.++.+||.|.
T Consensus 56 ~~fdYaeefk~lD~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN~ 135 (730)
T COG0376 56 EDFDYAEEFKSLDLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNA 135 (730)
T ss_pred cchHHHHHhhhccHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCccc
Confidence 4678888854 4789999998865 468999999999999999999999976 689999999999999
Q ss_pred chHHHHHHHHHHhhhCC-cccHHHHHHhhhhhHhHhcCCCcccCCCCCCCCCCCCC------------------------
Q 024489 72 GLKIAIDLCEGVKAKHP-RITYADLYQLAGVVAVEVTGGPAIDFAPGRKDSSESPE------------------------ 126 (267)
Q Consensus 72 gl~~~~~~i~~ik~~~p-~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~------------------------ 126 (267)
+|+++..++++||++|+ .||+||+++|++.+|++.+|+|.+.|..||.|-.++..
T Consensus 136 nLDKarRLLWPIKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~ 215 (730)
T COG0376 136 NLDKARRLLWPIKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLEN 215 (730)
T ss_pred chHHHHHHhhhHhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccC
Confidence 99999999999999999 99999999999999999999999999999999876642
Q ss_pred --------------C--CCCCCCcCCHHHHHHHHHHCCCChhhhhhhcc-ccccccccCCC-------------------
Q 024489 127 --------------E--GRLPDAAQGVSHLRDIFYRMGLSDKDIVALSG-GHTLGRAHPER------------------- 170 (267)
Q Consensus 127 --------------~--~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL~G-aHtiG~~~~~~------------------- 170 (267)
+ +..|+|-.+..+++..|++|+++.+|.|||++ |||+|.+|...
T Consensus 216 PlaavqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGl 295 (730)
T COG0376 216 PLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGL 295 (730)
T ss_pred chhhheeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhcc
Confidence 2 34788888999999999999999999999985 89999999631
Q ss_pred ----------------CCCCCCCCCCCCccChHHHHHHhhccc-------------------------------CCcccc
Q 024489 171 ----------------SGYEGPWTKEPLKFDNSYFVELLKGES-------------------------------EGLLKL 203 (267)
Q Consensus 171 ----------------~~~~g~~~~tp~~fDN~Yy~~ll~~~~-------------------------------~gl~~l 203 (267)
+|..++|+.||++|||.||.+|+..+| ..++||
T Consensus 296 GW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~Ml 375 (730)
T COG0376 296 GWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMML 375 (730)
T ss_pred ccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceee
Confidence 123467999999999999999998653 146789
Q ss_pred ccccccccChhhHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCC--CCCCcccccccccc
Q 024489 204 PTDKALLEDPKFRYYVELYAKDEDAFFTDYAASHKKLSELGFNP--PSLAGIGVKENKFI 261 (267)
Q Consensus 204 ~sD~~L~~d~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~lgv~t--g~~g~~~i~~~c~~ 261 (267)
++|.+|.-||.++.+.++|.+|++.|.+.|++||.||.+.++.| ++.|+ ||+++.+|
T Consensus 376 ttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRDMGP~~rylGp-~VP~e~li 434 (730)
T COG0376 376 TTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRDMGPKARYLGP-EVPKEDLI 434 (730)
T ss_pred ccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhccCCchhhccCC-CCchhhhh
Confidence 99999999999999999999999999999999999999876654 89999 99998876
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.4e-21 Score=185.34 Aligned_cols=236 Identities=27% Similarity=0.419 Sum_probs=185.5
Q ss_pred ccccChhHHHH-HHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCC-CccChhhhcccCcC--chHHHHHH
Q 024489 4 SIAIDAEYLKE-IEKARRDLRSLISSRSCAPIMLRLAWHDAGTYDAKTRTGGPDG-SIRHEQEYAHNANN--GLKIAIDL 79 (267)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~aa~~lRl~FHDc~~~d~~~~~gG~dg-Si~~~~e~~~~~N~--gl~~~~~~ 79 (267)
+|+++++.+++ |+.+|. +|+++.-...+++-.+|..+.||..|++.||++| .|++.+.++|+.|. -|.+.+.+
T Consensus 439 iP~vd~~l~d~di~~lK~---~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~ 515 (730)
T COG0376 439 LPAVDYELVDADIAALKA---KILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAV 515 (730)
T ss_pred CCccccccchHHHHHHHH---HHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHH
Confidence 68999988873 444433 5667887899999999999999999999999998 79999999999996 57788899
Q ss_pred HHHHhhhCC-cccHHHHHHhhhhhHhHhc---CCC--cccCCCCCCCCCCCCCC-----CCCC------------CCcCC
Q 024489 80 CEGVKAKHP-RITYADLYQLAGVVAVEVT---GGP--AIDFAPGRKDSSESPEE-----GRLP------------DAAQG 136 (267)
Q Consensus 80 i~~ik~~~p-~VS~ADiialAa~~av~~~---GGP--~~~v~~GR~D~~~s~~~-----~~lP------------~p~~~ 136 (267)
++.|.+.+. .||.||+|+|++..+|+.+ +|= .+||..||.|+++.... -.-| .....
T Consensus 516 le~iq~~fnkkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~p 595 (730)
T COG0376 516 LEKIQKEFNKKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTP 595 (730)
T ss_pred HHHHHHHhcCccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCH
Confidence 999998876 7999999999999999875 443 57889999999765421 0111 11223
Q ss_pred HHHHHHHHHHCCCChhhhhhhccc-cccccccCCCCCCCCCCCCCCCccChHHHHHHhhcc--c----------------
Q 024489 137 VSHLRDIFYRMGLSDKDIVALSGG-HTLGRAHPERSGYEGPWTKEPLKFDNSYFVELLKGE--S---------------- 197 (267)
Q Consensus 137 ~~~l~~~F~~~Gls~~e~VaL~Ga-HtiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~~--~---------------- 197 (267)
.+-|++.-+-.+||..||++|+|| .-+|.-+.. + -.|.++..|.++.|.||.||++.. |
T Consensus 596 e~~LvDkAqlL~LtapemtVLiGGlRvLg~n~g~-s-~~GVfT~~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~Drk 673 (730)
T COG0376 596 EELLVDKAQLLTLTAPEMTVLIGGLRVLGANYGG-S-KHGVFTDRPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRK 673 (730)
T ss_pred HHHHHHHHHHhccCCccceEEEcceEeeccCCCC-C-ccceeccCcccccchhhhhhhhccceeeeccccccceeccccc
Confidence 344788888899999999999997 445543321 1 246788899999999999999743 1
Q ss_pred CCccc---cccccccccChhhHHHHHHHhh--CHHHHHHHHHHHHHHHHhCC
Q 024489 198 EGLLK---LPTDKALLEDPKFRYYVELYAK--DEDAFFTDYAASHKKLSELG 244 (267)
Q Consensus 198 ~gl~~---l~sD~~L~~d~~t~~~v~~yA~--~~~~F~~~Fa~Am~Km~~lg 244 (267)
.|-++ -..|..+-+++..|.+.+.||+ +++.|.+||++||.|..++.
T Consensus 674 tG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 674 TGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred cCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 12211 2567888899999999999997 58999999999999998874
No 19
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=72.51 E-value=2.9 Score=31.42 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCC
Q 024489 228 AFFTDYAASHKKLSELGFNPPS 249 (267)
Q Consensus 228 ~F~~~Fa~Am~Km~~lgv~tg~ 249 (267)
...++|..||.||+.+|.....
T Consensus 2 ~m~~~F~~am~KlavLG~d~~~ 23 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHDRSD 23 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-GGG
T ss_pred hHHHHHHHHHHHHHHhcCChhh
Confidence 4568999999999999987543
No 20
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=36.68 E-value=36 Score=29.53 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=33.5
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCC-------cCCHHHHHHHHHHCCCChhhhhhhcccc
Q 024489 110 PAIDFAPGRKDSSESPEEGRLPDA-------AQGVSHLRDIFYRMGLSDKDIVALSGGH 161 (267)
Q Consensus 110 P~~~v~~GR~D~~~s~~~~~lP~p-------~~~~~~l~~~F~~~Gls~~e~VaL~GaH 161 (267)
|.+.|+|-.+......+...+|.. +.-..+|...|.++|++..|-+.++..|
T Consensus 73 PvmvFpW~~~~~~~~~p~~~~~~g~~ekHHIFPQa~~la~wF~~~Gi~IHd~ti~Ip~~ 131 (188)
T PF09533_consen 73 PVMVFPWYGRPRRPIPPARRLPPGRWEKHHIFPQAEELAEWFERRGIDIHDYTIPIPRD 131 (188)
T ss_pred eEEEeeccCCCcCCCCCccCCCCCcchhhccCCCcHHHHHHHHHcCCChhheeEecCHH
Confidence 455566644555444443334433 1234579999999999999999888654
No 21
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=35.56 E-value=23 Score=24.44 Aligned_cols=30 Identities=27% Similarity=0.384 Sum_probs=21.7
Q ss_pred HHHhhhh---hHhHhcCCCcccCCCCCCCCCCC
Q 024489 95 LYQLAGV---VAVEVTGGPAIDFAPGRKDSSES 124 (267)
Q Consensus 95 iialAa~---~av~~~GGP~~~v~~GR~D~~~s 124 (267)
+++||++ |-+..|.||.+++-.||=-...|
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptps 41 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPS 41 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChh
Confidence 5666765 44667899999999999654433
No 22
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=34.75 E-value=45 Score=27.95 Aligned_cols=24 Identities=42% Similarity=0.608 Sum_probs=21.2
Q ss_pred ccChhHHHHHHHH--HHHHHHHHhCC
Q 024489 6 AIDAEYLKEIEKA--RRDLRSLISSR 29 (267)
Q Consensus 6 ~~~~~~~~~~~~~--~~~l~~~~~~~ 29 (267)
=++||++++|+.| |++|++++.+.
T Consensus 23 widp~~~eei~~A~TR~dIr~LIk~g 48 (150)
T COG2147 23 WIDPNEIEEIASAITREDIRALIKDG 48 (150)
T ss_pred eeChHHHHHHHHhhhHHHHHHHHHCC
Confidence 3789999999987 89999999876
No 23
>cd00481 Ribosomal_L19e Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=25.90 E-value=77 Score=26.50 Aligned_cols=24 Identities=46% Similarity=0.620 Sum_probs=21.1
Q ss_pred ccChhHHHHHHHH--HHHHHHHHhCC
Q 024489 6 AIDAEYLKEIEKA--RRDLRSLISSR 29 (267)
Q Consensus 6 ~~~~~~~~~~~~~--~~~l~~~~~~~ 29 (267)
=++||++++|..| |++|+.++.|.
T Consensus 20 W~DP~~~~eI~~A~tR~dIR~LIkdG 45 (145)
T cd00481 20 WIDPNELEEIANANTREDIRKLIKDG 45 (145)
T ss_pred eeCHHHHHHHHHhhhHHHHHHHHHCC
Confidence 3699999999987 89999999885
No 24
>PRK12346 transaldolase A; Provisional
Probab=25.88 E-value=70 Score=30.12 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=36.3
Q ss_pred hcCCCcccCCCCCCCCCCCCC--CCCC-CCC---cCCHHHHHHHHHHCCCC----------hhhhhhhcccccc
Q 024489 106 VTGGPAIDFAPGRKDSSESPE--EGRL-PDA---AQGVSHLRDIFYRMGLS----------DKDIVALSGGHTL 163 (267)
Q Consensus 106 ~~GGP~~~v~~GR~D~~~s~~--~~~l-P~p---~~~~~~l~~~F~~~Gls----------~~e~VaL~GaHti 163 (267)
.+|-..+..++||.|...-.. .... |.. ...+.++.++|++.|+. ..|+.+|.|+|.+
T Consensus 168 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn~~qi~alaG~d~l 241 (316)
T PRK12346 168 EAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRTEQILALAGCDRL 241 (316)
T ss_pred HcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHHHhCCCEE
Confidence 357888999999998653221 1111 111 23466777788888854 4667777787744
No 25
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=25.62 E-value=81 Score=26.54 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=21.2
Q ss_pred ccChhHHHHHHHH--HHHHHHHHhCC
Q 024489 6 AIDAEYLKEIEKA--RRDLRSLISSR 29 (267)
Q Consensus 6 ~~~~~~~~~~~~~--~~~l~~~~~~~ 29 (267)
=++||++++|+.| |++|+.++.|.
T Consensus 23 w~DP~~~~eI~~A~tR~dIR~LI~~G 48 (150)
T PRK08570 23 WIDPEALEDVAEAITREDIRELIKEG 48 (150)
T ss_pred eeCHHHHHHHHHHhhHHHHHHHHHCC
Confidence 3699999999987 89999999886
No 26
>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=24.78 E-value=83 Score=26.31 Aligned_cols=24 Identities=46% Similarity=0.663 Sum_probs=21.0
Q ss_pred ccChhHHHHHHHH--HHHHHHHHhCC
Q 024489 6 AIDAEYLKEIEKA--RRDLRSLISSR 29 (267)
Q Consensus 6 ~~~~~~~~~~~~~--~~~l~~~~~~~ 29 (267)
=++||++++|..| |++|++++.|.
T Consensus 20 w~DP~~~~eI~~A~tR~dIR~LI~~G 45 (145)
T cd01418 20 WIDPERLEEVAEAITRDDIRALIKEG 45 (145)
T ss_pred eeChHHHHHHHHhhhHHHHHHHHHCC
Confidence 3689999999987 89999999885
No 27
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=23.70 E-value=43 Score=27.63 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHCCCChhhhhhh-ccccccccccC
Q 024489 136 GVSHLRDIFYRMGLSDKDIVAL-SGGHTLGRAHP 168 (267)
Q Consensus 136 ~~~~l~~~F~~~Gls~~e~VaL-~GaHtiG~~~~ 168 (267)
++.+.+-.|+++|+++.++-++ --+|-||.++.
T Consensus 32 dvkeqI~K~akKGltpsqIGviLRDshGi~q~r~ 65 (151)
T KOG0400|consen 32 DVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVRF 65 (151)
T ss_pred HHHHHHHHHHHcCCChhHceeeeecccCcchhhe
Confidence 4555566789999999998554 46898888764
No 28
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=23.65 E-value=99 Score=29.95 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=36.6
Q ss_pred cCCCcccCCCCCCCCCCCCCCC--CCCCCc----CCHHHHHHHHHHCCCC----------hhhhhhhcccccc
Q 024489 107 TGGPAIDFAPGRKDSSESPEEG--RLPDAA----QGVSHLRDIFYRMGLS----------DKDIVALSGGHTL 163 (267)
Q Consensus 107 ~GGP~~~v~~GR~D~~~s~~~~--~lP~p~----~~~~~l~~~F~~~Gls----------~~e~VaL~GaHti 163 (267)
+|-..+..+.||.|...-...+ .+|... ..+.++.+.|+..|+. +.++..|.|+|.+
T Consensus 174 AGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~~~v~~laG~d~~ 246 (391)
T PRK12309 174 AGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIGEIIELAGCDLL 246 (391)
T ss_pred cCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEecccCCHHHHHHHHCCCee
Confidence 5778899999998774433222 133322 2366777788887753 4666777788744
No 29
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=23.38 E-value=1.5e+02 Score=23.58 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCccChhhhc-ccCcCchHHHHHHHHHHhhhCC
Q 024489 10 EYLKEIEKARRDLRSLISSRSCAPIMLRLAWHDAGTYDAKTRTGGPDGSIRHEQEYA-HNANNGLKIAIDLCEGVKAKHP 88 (267)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~aa~~lRl~FHDc~~~d~~~~~gG~dgSi~~~~e~~-~~~N~gl~~~~~~i~~ik~~~p 88 (267)
|..+++++ .-.+++.++..-.-.+|-.+.||++||--.- -.|+..+-+. +..|. +..++.+++.+|.+|.
T Consensus 6 Et~eeF~a---ry~~~F~~~~iD~we~rrglN~l~~~DlVP~-----P~ii~aALrAcRRvND-~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 6 ETDEEFDA---RYEKYFNRPDIDGWELRRGLNNLFGYDLVPE-----PKIIEAALRACRRVND-FALAVRILEGIKDKCG 76 (108)
T ss_dssp --HHHHHH---HHHHHHH-TT--HHHHHHHHHHHTTSSB--------HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTT
T ss_pred cCHHHHHH---HHHHHhCCccccHHHHHHHHHHHhccccCCC-----hHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHcc
Confidence 44455544 3346777788888889999999997664311 1122111121 23443 3457899999999986
No 30
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=22.39 E-value=1.2e+02 Score=28.42 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=33.0
Q ss_pred cCCCcccCCCCCCCCCCCCCCC--CCCC----CcCCHHHHHHHHHHCCCCh----------hhhhhhcccc
Q 024489 107 TGGPAIDFAPGRKDSSESPEEG--RLPD----AAQGVSHLRDIFYRMGLSD----------KDIVALSGGH 161 (267)
Q Consensus 107 ~GGP~~~v~~GR~D~~~s~~~~--~lP~----p~~~~~~l~~~F~~~Gls~----------~e~VaL~GaH 161 (267)
+|-..+..+.||.|-..-...+ ..+. ....+.++.+.|++.|+.. .|+..|.|+|
T Consensus 168 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaASfRn~~~v~~laG~d 238 (313)
T cd00957 168 AGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRNIGQILALAGCD 238 (313)
T ss_pred cCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHHHhCCC
Confidence 4777889999998765322111 1111 1234667777888888754 4555555655
No 31
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=21.60 E-value=73 Score=23.94 Aligned_cols=36 Identities=31% Similarity=0.716 Sum_probs=22.8
Q ss_pred cccChhhHHHHHHHhhCHHHHHHHH-----------HHHHHHHHhCCCCC
Q 024489 209 LLEDPKFRYYVELYAKDEDAFFTDY-----------AASHKKLSELGFNP 247 (267)
Q Consensus 209 L~~d~~t~~~v~~yA~~~~~F~~~F-----------a~Am~Km~~lgv~t 247 (267)
|.+||. +-++|.+|++.+++.| ..-|.+|..+||.|
T Consensus 13 L~~dp~---~rerF~~DPea~~~~~gLt~eE~~aL~~~D~~~L~~lGvhp 59 (81)
T cd07922 13 LFKDPG---LIERFQDDPSAVFEEYGLTPAERAALREGTFGALTSIGVHP 59 (81)
T ss_pred HhcCHH---HHHHHHHCHHHHHHHcCCCHHHHHHHHccCHHHHHHcCCCH
Confidence 444553 3455778888887777 23366777777754
No 32
>PF15656 Tox-HDC: Toxin with a H, D/N and C signature
Probab=21.49 E-value=64 Score=26.10 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=30.0
Q ss_pred HHHHHHCCCC--hhhhhhhccccccccccCCCCCCCCCCCCCCCccChHHHHHHhhc
Q 024489 141 RDIFYRMGLS--DKDIVALSGGHTLGRAHPERSGYEGPWTKEPLKFDNSYFVELLKG 195 (267)
Q Consensus 141 ~~~F~~~Gls--~~e~VaL~GaHtiG~~~~~~~~~~g~~~~tp~~fDN~Yy~~ll~~ 195 (267)
++.+ +++++ ..++++|||.| |..+..+.--.+.....|...+++||++=+.-
T Consensus 18 l~~I-ar~~s~~~~~I~IlSGtH--G~~~G~nw~~~~~~~R~p~l~e~~f~~eD~~~ 71 (119)
T PF15656_consen 18 LETI-ARRPSGDNGDIHILSGTH--GYCSGQNWLSESNRLRRPGLKEKAFYKEDLRD 71 (119)
T ss_pred HHHH-HhCcCCCCCCEEEEeCCC--CCccccchhhccccccCchhhhhhHHHHHHHH
Confidence 3444 34554 88999999988 43332110000011235888999999776653
No 33
>cd01417 Ribosomal_L19e_E Ribosomal protein L19e, eukaryotic. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=21.42 E-value=1e+02 Score=26.25 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.9
Q ss_pred ccChhHHHHHHHH--HHHHHHHHhCC
Q 024489 6 AIDAEYLKEIEKA--RRDLRSLISSR 29 (267)
Q Consensus 6 ~~~~~~~~~~~~~--~~~l~~~~~~~ 29 (267)
-++||++++|..| |++|+.++.|.
T Consensus 20 W~DP~~~~eI~~A~tR~dIR~LIkdG 45 (164)
T cd01417 20 WLDPNEISEISNANSRQSIRKLIKDG 45 (164)
T ss_pred eeCHHHHHHHHHhhhHHHHHHHHHCC
Confidence 3699999999987 89999999875
No 34
>PTZ00097 60S ribosomal protein L19; Provisional
Probab=21.31 E-value=1e+02 Score=26.52 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.0
Q ss_pred ccChhHHHHHHHH--HHHHHHHHhCC
Q 024489 6 AIDAEYLKEIEKA--RRDLRSLISSR 29 (267)
Q Consensus 6 ~~~~~~~~~~~~~--~~~l~~~~~~~ 29 (267)
-++|+++++|..| |++|+.++.|.
T Consensus 21 WiDP~~~~eI~~A~tR~dIR~LIkdG 46 (175)
T PTZ00097 21 WLDPNEASEISLANSRFSIRKLIKDG 46 (175)
T ss_pred eeCHHHHHHHHHhhhHHHHHHHHHCC
Confidence 3699999999987 89999999875
No 35
>PTZ00411 transaldolase-like protein; Provisional
Probab=21.01 E-value=94 Score=29.49 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=36.0
Q ss_pred cCCCcccCCCCCCCCCCCCCC---CCCCCCc---CCHHHHHHHHHHCCCC----------hhhhhhhcccccc
Q 024489 107 TGGPAIDFAPGRKDSSESPEE---GRLPDAA---QGVSHLRDIFYRMGLS----------DKDIVALSGGHTL 163 (267)
Q Consensus 107 ~GGP~~~v~~GR~D~~~s~~~---~~lP~p~---~~~~~l~~~F~~~Gls----------~~e~VaL~GaHti 163 (267)
+|-..+..++||.+...-.+. ...+... ..+.++.+.|+..|+. ..|+..|.|+|.+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 477888999999865432221 1112122 2466677788888864 5677888888844
No 36
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=20.34 E-value=1.5e+02 Score=27.92 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=35.8
Q ss_pred hcCCCcccCCCCCCCCCCCCCCC--CC-C---CCcCCHHHHHHHHHHCCCC----------hhhhhhhcccccc
Q 024489 106 VTGGPAIDFAPGRKDSSESPEEG--RL-P---DAAQGVSHLRDIFYRMGLS----------DKDIVALSGGHTL 163 (267)
Q Consensus 106 ~~GGP~~~v~~GR~D~~~s~~~~--~l-P---~p~~~~~~l~~~F~~~Gls----------~~e~VaL~GaHti 163 (267)
.+|-..+..+.||.|-..-...+ .. + +.-..+.++.+.|++.|+. ..|+.+|.|+|.+
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~~ 240 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDRL 240 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHHHCCCeE
Confidence 35778899999998764222111 11 1 1223466777788888864 4566777777743
Done!