BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024490
         (267 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DHW|A Chain A, Crystal Structure Of Methionine Importer Metni
 pdb|3DHW|B Chain B, Crystal Structure Of Methionine Importer Metni
 pdb|3DHW|E Chain E, Crystal Structure Of Methionine Importer Metni
 pdb|3DHW|F Chain F, Crystal Structure Of Methionine Importer Metni
 pdb|3TUI|A Chain A, Inward Facing Conformations Of The Metni Methionine Abc
           Transporter: Cy5 Native Crystal Form
 pdb|3TUI|B Chain B, Inward Facing Conformations Of The Metni Methionine Abc
           Transporter: Cy5 Native Crystal Form
 pdb|3TUI|E Chain E, Inward Facing Conformations Of The Metni Methionine Abc
           Transporter: Cy5 Native Crystal Form
 pdb|3TUI|F Chain F, Inward Facing Conformations Of The Metni Methionine Abc
           Transporter: Cy5 Native Crystal Form
 pdb|3TUZ|A Chain A, Inward Facing Conformations Of The Metni Methionine Abc
           Transporter: Cy5 Semet Soak Crystal Form
 pdb|3TUZ|B Chain B, Inward Facing Conformations Of The Metni Methionine Abc
           Transporter: Cy5 Semet Soak Crystal Form
 pdb|3TUZ|E Chain E, Inward Facing Conformations Of The Metni Methionine Abc
           Transporter: Cy5 Semet Soak Crystal Form
 pdb|3TUZ|F Chain F, Inward Facing Conformations Of The Metni Methionine Abc
           Transporter: Cy5 Semet Soak Crystal Form
          Length = 217

 Score = 30.8 bits (68), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 157 IKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPG 207
           ++I   L+E + A+GATP Q     V++ L+    P L NA T+ LI+L G
Sbjct: 113 LEIPTGLIEASRAMGATPMQI----VRKVLLPEALPGLVNAATITLITLVG 159


>pdb|3TUJ|A Chain A, Inward Facing Conformations Of The Metni Methionine Abc
           Transporter: Dm Crystal Form
 pdb|3TUJ|B Chain B, Inward Facing Conformations Of The Metni Methionine Abc
           Transporter: Dm Crystal Form
          Length = 217

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 157 IKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPG 207
           ++I   L+E + A GATP Q     V++ L+    P L NA T+ LI+L G
Sbjct: 113 LEIPTGLIEASRAXGATPXQI----VRKVLLPEALPGLVNAATITLITLVG 159


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,206,395
Number of Sequences: 62578
Number of extensions: 209999
Number of successful extensions: 447
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 10
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)