BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024490
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZUT3|ALS3_ARATH Protein ALUMINUM SENSITIVE 3 OS=Arabidopsis thaliana GN=ALS3 PE=1
SV=1
Length = 273
Score = 434 bits (1117), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/263 (82%), Positives = 245/263 (93%)
Query: 5 DVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQF 64
D EWL+ FLKGM+KP AA VVLLAV+LS+ Q L +EGEMIYS+ R+FLQLSVIGFVLQF
Sbjct: 11 DYEWLIVFLKGMVKPAAALVVVLLAVILSYSQNLSLEGEMIYSVSRSFLQLSVIGFVLQF 70
Query: 65 IFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVF 124
IF+Q+N GWIILAYLFMV VAGYTAGQRA+HVPRGKYVAG SILAGT++TM +LV+LNVF
Sbjct: 71 IFNQENSGWIILAYLFMVSVAGYTAGQRARHVPRGKYVAGLSILAGTSITMFLLVLLNVF 130
Query: 125 PFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKR 184
PFTPRY+IP+AGM+VGNAMTVTGVTMK+LRDDIK+QLNLVETALALGATPRQAT QQVKR
Sbjct: 131 PFTPRYMIPIAGMLVGNAMTVTGVTMKQLRDDIKMQLNLVETALALGATPRQATLQQVKR 190
Query: 185 SLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMS 244
+LVI+LSPVLD+ KTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNM++GA+TVSSI S
Sbjct: 191 ALVISLSPVLDSCKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMMVGAATVSSITS 250
Query: 245 TYLCWPAFFTKAYQLESKVFRTD 267
TYLCWP+FFTKAYQL++ VF +D
Sbjct: 251 TYLCWPSFFTKAYQLQTHVFSSD 273
>sp|Q5W7C1|STAR2_ORYSJ UPF0014 membrane protein STAR2 OS=Oryza sativa subsp. japonica
GN=STAR2 PE=1 SV=1
Length = 285
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/257 (78%), Positives = 233/257 (90%)
Query: 11 DFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDN 70
+FL GM+KP+AATAVV +AV LSF Q+LG+EGEM+Y++ RAFLQLSVIGFVLQFIF+Q +
Sbjct: 29 EFLVGMLKPVAATAVVAMAVALSFTQRLGLEGEMLYAMARAFLQLSVIGFVLQFIFTQKS 88
Query: 71 RGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRY 130
WI+LAYLFMV VAGYTAGQRA+HVPRGK++A SILAGT+VTM +LV L VFPFTPRY
Sbjct: 89 AAWILLAYLFMVTVAGYTAGQRARHVPRGKHIAAVSILAGTSVTMALLVALRVFPFTPRY 148
Query: 131 IIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIAL 190
IIPVAGMMVGNAMTVTGVTMK+LR+D+ +Q +VETALALGATPRQAT +QV+RSLVIAL
Sbjct: 149 IIPVAGMMVGNAMTVTGVTMKKLREDVGMQRGVVETALALGATPRQATARQVRRSLVIAL 208
Query: 191 SPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWP 250
SPV+DNAKTVGLI+LPGAMTG+IMGGASPLEAIQLQIVVMNML+GASTVSSI+STYLCWP
Sbjct: 209 SPVIDNAKTVGLIALPGAMTGLIMGGASPLEAIQLQIVVMNMLMGASTVSSILSTYLCWP 268
Query: 251 AFFTKAYQLESKVFRTD 267
AFFT A+QL VF D
Sbjct: 269 AFFTGAFQLNDAVFAAD 285
>sp|P77307|YBBM_ECOLI UPF0014 inner membrane protein YbbM OS=Escherichia coli (strain
K12) GN=ybbM PE=1 SV=2
Length = 259
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 153/238 (64%)
Query: 22 ATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFM 81
A +V++A+L+S +KL +E ++++S+ RA +QL ++G+VL++IFS D+ +L LF+
Sbjct: 14 ALMLVVVAILISHKEKLALEKDILWSVGRAIIQLIIVGYVLKYIFSVDDASLTLLMVLFI 73
Query: 82 VIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGN 141
A + A +R+K++ + + +I G +T+ +L++ F P +IP+AGM+ GN
Sbjct: 74 CFNAAWNAQKRSKYIAKAFISSFIAITVGAGITLAVLILSGSIEFIPMQVIPIAGMIAGN 133
Query: 142 AMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVG 201
AM G+ L + + ++ L+LGATP+QA+ ++ S+ AL P +D+AKTVG
Sbjct: 134 AMVAVGLCYNNLGQRVISEQQQIQEKLSLGATPKQASAILIRDSIRAALIPTVDSAKTVG 193
Query: 202 LISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQL 259
L+SLPG M+G+I G P++AI+ QI+V ML+ +++S+I++ YL + F+ +QL
Sbjct: 194 LVSLPGMMSGLIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIACYLTYRKFYNSRHQL 251
>sp|O34684|YJKA_BACSU UPF0014 membrane protein YjkA OS=Bacillus subtilis (strain 168)
GN=yjkA PE=3 SV=1
Length = 250
Score = 140 bits (354), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 150/237 (63%)
Query: 26 VLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVA 85
VL+A+ LS K G+E +MI + +RA +QL +IG+VL IF D+ +I+L L M+ VA
Sbjct: 13 VLIALFLSKSFKAGVEKDMIIATIRAAVQLLIIGYVLSLIFRGDHPVFILLMVLLMLAVA 72
Query: 86 GYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTV 145
+R K+ + A++ VT +L+ L++ P T RY+IP++GM++GN+M +
Sbjct: 73 AQNVIKRKKNTIGSFWRVFAALAIVEIVTQGILLSLHIIPLTARYVIPISGMVIGNSMVL 132
Query: 146 TGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISL 205
+ + + RL ++ ++ ++ L+LG TP+Q+ ++ + ++ +++ P L++ KT+GL+ L
Sbjct: 133 SSLFLNRLNSEVGVRKEEIQLILSLGGTPKQSIQRILTSAMKMSMIPTLESQKTLGLVQL 192
Query: 206 PGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLESK 262
PG MTG I+ GA P++A++ Q++++ + ++ ++ ++ + L +P+ FT QL+
Sbjct: 193 PGMMTGQILAGADPIQAVRFQLLIVFTTMASAALTCVILSVLTYPSLFTVHQQLKQN 249
>sp|Q58348|Y938_METJA UPF0014 membrane protein MJ0938 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0938 PE=3 SV=1
Length = 250
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 139/229 (60%), Gaps = 9/229 (3%)
Query: 26 VLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLF---MV 82
V++AVL+++ +KLGIE +++Y + A +QL ++GFVL +IFS G A+L M+
Sbjct: 20 VIIAVLIAYREKLGIEKKILYVSILALIQLFILGFVLLYIFSFGMVG----AFLMIGVMI 75
Query: 83 IVAGYTAGQRAKHVPRGKYVAGASI--LAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVG 140
+A Y + + K I L T V++ +L + V F P Y+IP+ GM++G
Sbjct: 76 TLASYLIMREINLKNKTKLFICLFITFLTTTIVSLAVLTIPKVVKFEPIYVIPLMGMVIG 135
Query: 141 NAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTV 200
N M + + ++ D +K + +++ LALGAT +A + +K ++ A+ P ++ K+V
Sbjct: 136 NTMNTIHLALDKIIDMVKSERDILWGYLALGATEIEALRPFIKNAVKSAVIPQMNRTKSV 195
Query: 201 GLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCW 249
G+I +PGAM GM++ GA+P+ A ++QI++M M++ ++ +S I+ YL +
Sbjct: 196 GVIFIPGAMVGMLLSGANPIYAAEIQIIIMWMILSSAVISGILICYLMY 244
>sp|P74369|Y1647_SYNY3 UPF0014 membrane protein slr1647 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1647 PE=3 SV=1
Length = 259
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/261 (31%), Positives = 138/261 (52%), Gaps = 21/261 (8%)
Query: 5 DVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQF 64
D+ W+L L I LL + Q L + G+++++ R LQL V+G+ L
Sbjct: 12 DIGWMLGLLGAAIA------------LLQW-QGLNLTGQLLWAGGRTILQLIVVGYFLAV 58
Query: 65 IFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGA---SILAGTAVTMLMLVVL 121
+FS DN ++L M+ +A A R PR K + G S+ A TA+++ +V+
Sbjct: 59 VFSLDNPWAVLLVLAIMLTIAAVVARNRIN--PRSKSLFGWLWLSLGASTAISLGYALVV 116
Query: 122 NVFP---FTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQAT 178
+ P ++P+Y+IP+ GM++G M + +RL I+ +ET L LGATP QA
Sbjct: 117 IIQPPQWYSPQYLIPLTGMILGQTMNSASLAGERLASAIQQNPREIETHLCLGATPGQAI 176
Query: 179 KQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGAST 238
+ ++ +L P ++ VGL+SLPG +TG ++ G PL A QI++M +++ +T
Sbjct: 177 ASYRRAAIRASLIPTVNQMMVVGLVSLPGMLTGQVLAGGDPLNASVYQILIMFLILLTNT 236
Query: 239 VSSIMSTYLCWPAFFTKAYQL 259
+S+I T + +F + QL
Sbjct: 237 LSTIAVTATVYRQYFNQHQQL 257
>sp|Q8ZH39|METI_YERPE D-methionine transport system permease protein MetI OS=Yersinia
pestis GN=metI PE=3 SV=1
Length = 217
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 21/105 (20%)
Query: 120 VLNVFPFTPR-----YIIPVAGMMVGNAMTVTGVT----------MKRLRDD--IKIQLN 162
V+N+F P ++IP M+VG ++ + + R+ ++ ++I
Sbjct: 59 VVNIFRSIPFIILLVWMIPFTRMIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPSG 118
Query: 163 LVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPG 207
LVE A A+GATP Q +K+ L+ P L NA T+ LI+L G
Sbjct: 119 LVEAARAMGATPMQI----IKKVLLPEALPGLVNAATITLITLVG 159
>sp|Q4FM19|ILVD_PELUB Dihydroxy-acid dehydratase OS=Pelagibacter ubique (strain HTCC1062)
GN=ilvD PE=3 SV=1
Length = 572
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 30/96 (31%)
Query: 97 PRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDD 156
P GKYVA LAG V ML+ + + G + G+ MTVTG TMK+ +
Sbjct: 313 PGGKYVAKDMWLAG-GVPMLLKTLFD------------GGFIHGDCMTVTGKTMKQNLKN 359
Query: 157 IKIQLNLVETALALGATPRQATKQQVKRSLVIALSP 192
IK KQ+V R+ LSP
Sbjct: 360 IKFN-----------------PKQKVLRAYDNPLSP 378
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.139 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,809,117
Number of Sequences: 539616
Number of extensions: 3025039
Number of successful extensions: 11495
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 11479
Number of HSP's gapped (non-prelim): 34
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)