Query 024490
Match_columns 267
No_of_seqs 113 out of 533
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:59:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00245 conserved hypothetic 100.0 2.6E-77 5.7E-82 541.0 30.4 243 17-259 4-248 (248)
2 PF03649 UPF0014: Uncharacteri 100.0 2E-75 4.4E-80 529.4 30.1 240 16-255 9-250 (250)
3 COG0390 ABC-type uncharacteriz 100.0 1.3E-74 2.8E-79 516.0 24.7 245 17-261 9-254 (256)
4 PRK11122 artM arginine transpo 96.1 0.27 5.9E-06 43.4 14.3 59 138-196 95-154 (222)
5 COG0765 HisM ABC-type amino ac 96.0 0.13 2.8E-06 46.5 12.2 180 41-239 14-201 (222)
6 PRK09494 glnP glutamine ABC tr 95.3 0.77 1.7E-05 40.5 14.1 62 132-193 88-151 (219)
7 TIGR02789 nickel_nikB nickel A 95.0 2.5 5.4E-05 39.5 17.3 41 148-188 190-233 (314)
8 PRK10782 DL-methionine transpo 94.6 2.9 6.2E-05 36.5 16.2 78 134-211 89-175 (217)
9 PRK10417 nikC nickel transport 94.5 3.1 6.6E-05 38.2 16.3 107 151-257 146-266 (272)
10 PRK15100 amino acid ABC transp 94.3 2.9 6.3E-05 36.9 15.2 62 132-193 86-148 (220)
11 PRK15135 histidine/lysine/argi 93.7 4.6 0.0001 35.5 16.4 59 149-207 108-172 (228)
12 CHL00187 cysT sulfate transpor 93.6 4.8 0.0001 35.7 15.3 49 134-182 137-186 (237)
13 PRK10352 nickel transporter pe 93.4 7.1 0.00015 36.8 16.8 36 160-198 204-239 (314)
14 PRK09471 oppB oligopeptide tra 93.2 5.7 0.00012 37.0 15.7 35 159-196 201-235 (306)
15 TIGR03003 ectoine_ehuD ectoine 93.1 5.4 0.00012 34.6 18.5 75 142-216 94-178 (212)
16 PF02687 FtsX: FtsX-like perme 92.8 1.1 2.4E-05 34.3 8.9 48 149-196 15-62 (121)
17 TIGR01097 PhnE phosphonate ABC 92.8 6.8 0.00015 35.0 15.7 69 140-208 132-209 (250)
18 PRK15069 histidine/lysine/argi 92.4 8 0.00017 34.8 18.7 85 132-216 100-194 (234)
19 TIGR02140 permease_CysW sulfat 92.3 1.4 3.1E-05 39.6 10.1 57 133-189 128-189 (261)
20 PRK09421 modB molybdate ABC tr 91.8 8.4 0.00018 33.8 16.0 52 134-185 92-144 (229)
21 PRK09433 thiP thiamine transpo 91.8 13 0.00029 37.0 17.3 54 134-187 395-449 (525)
22 TIGR01581 Mo_ABC_porter NifC-l 91.3 2.9 6.4E-05 36.4 10.8 59 134-192 103-162 (225)
23 TIGR03004 ectoine_ehuC ectoine 90.7 11 0.00024 33.1 17.1 57 138-194 84-141 (214)
24 PRK15107 glutamate/aspartate t 90.4 12 0.00025 32.9 16.4 59 136-194 99-158 (224)
25 COG4662 TupA ABC-type tungstat 90.1 14 0.0003 33.2 14.3 71 116-186 80-152 (227)
26 PRK15110 antimicrobial peptide 89.2 17 0.00038 34.1 14.7 47 149-198 198-246 (321)
27 TIGR02141 modB_ABC molybdate A 89.2 8.2 0.00018 33.0 11.6 53 135-187 81-134 (208)
28 COG0601 DppB ABC-type dipeptid 89.1 13 0.00028 35.2 13.8 61 129-196 182-244 (317)
29 PRK13022 secF preprotein trans 89.1 2.4 5.2E-05 39.6 8.8 123 103-249 156-280 (289)
30 PRK09433 thiP thiamine transpo 88.7 27 0.00059 34.8 18.1 57 134-190 129-190 (525)
31 COG1178 ThiP ABC-type Fe3+ tra 88.7 30 0.00064 35.2 17.7 59 131-189 137-200 (540)
32 PRK05812 secD preprotein trans 88.6 2.7 5.9E-05 42.3 9.3 90 103-211 361-452 (498)
33 COG1177 PotC ABC-type spermidi 87.8 23 0.0005 32.9 19.6 98 133-230 134-246 (267)
34 PRK15133 microcin C ABC transp 87.4 14 0.00031 35.7 13.1 35 160-197 256-290 (364)
35 PRK12933 secD preprotein trans 87.1 4.4 9.5E-05 41.8 9.8 89 104-211 469-560 (604)
36 PRK11602 cysW sulfate/thiosulf 87.1 24 0.00051 32.2 17.7 57 134-190 146-207 (283)
37 COG0581 PstA ABC-type phosphat 87.1 0.9 1.9E-05 42.8 4.5 36 162-215 173-208 (292)
38 PRK15081 glutathione ABC trans 87.0 19 0.0004 33.8 13.4 61 129-196 172-234 (306)
39 PRK09497 potB spermidine/putre 86.4 25 0.00053 32.0 13.6 50 135-184 151-201 (285)
40 PRK13021 secF preprotein trans 86.3 5.4 0.00012 37.6 9.3 124 103-250 155-280 (297)
41 TIGR00966 3a0501s07 protein-ex 86.2 3.2 6.8E-05 37.7 7.5 92 102-210 126-219 (246)
42 PRK11123 arginine transporter 85.6 16 0.00034 32.9 11.7 60 136-195 106-166 (238)
43 TIGR03255 PhnV 2-aminoethylpho 85.4 28 0.00061 31.5 13.9 56 134-189 143-203 (272)
44 TIGR02139 permease_CysT sulfat 84.7 29 0.00064 31.1 16.4 58 135-192 133-191 (265)
45 TIGR01253 thiP thiamine ABC tr 84.6 45 0.00098 33.2 16.8 57 133-189 131-192 (519)
46 PF00528 BPD_transp_1: Binding 84.5 20 0.00044 29.1 14.1 53 136-188 55-108 (185)
47 PRK13024 bifunctional preprote 84.1 12 0.00027 39.5 11.7 114 105-244 296-411 (755)
48 TIGR00439 ftsX putative protei 83.9 5 0.00011 37.8 7.9 43 150-192 198-240 (309)
49 PRK10914 dipeptide transporter 83.8 41 0.00088 32.0 14.6 44 151-197 222-267 (339)
50 PRK09500 potC spermidine/putre 83.1 34 0.00073 30.6 14.0 56 134-189 127-183 (256)
51 PRK11275 pstC phosphate transp 83.0 20 0.00043 33.9 11.6 40 143-182 179-219 (319)
52 TIGR03262 PhnU2 putative 2-ami 83.0 39 0.00085 33.7 14.3 56 135-190 134-194 (546)
53 PRK10999 malF maltose transpor 82.5 21 0.00045 36.3 12.1 57 134-190 375-436 (520)
54 TIGR01185 devC DevC protein. T 82.3 15 0.00032 35.3 10.7 56 148-214 275-330 (380)
55 TIGR02790 nickel_nikC nickel A 82.1 39 0.00084 30.6 16.2 41 150-190 140-182 (258)
56 PRK11026 ftsX cell division AB 80.7 5.8 0.00013 37.3 7.1 41 151-191 199-239 (309)
57 COG4208 CysW ABC-type sulfate 80.7 46 0.00099 31.0 12.5 163 5-180 15-194 (287)
58 PRK14726 bifunctional preprote 79.9 29 0.00062 37.5 12.6 88 105-211 402-491 (855)
59 PF02355 SecD_SecF: Protein ex 79.9 23 0.00049 31.0 10.1 91 106-211 63-153 (189)
60 COG4160 ArtM ABC-type arginine 79.8 7.2 0.00016 35.4 7.0 96 139-239 101-205 (228)
61 TIGR00974 3a0107s02c phosphate 79.7 46 0.001 29.9 12.6 52 136-187 130-182 (271)
62 TIGR01129 secD protein-export 79.2 13 0.00028 36.3 9.2 90 103-211 276-367 (397)
63 COG0555 CysU ABC-type sulfate 79.0 30 0.00065 32.4 11.0 142 23-181 24-187 (274)
64 cd06261 TM_PBP2 Transmembrane 78.4 37 0.00081 28.2 11.6 57 135-192 75-132 (190)
65 COG4149 ModC ABC-type molybdat 78.3 15 0.00033 33.3 8.6 62 118-179 65-136 (225)
66 PRK14726 bifunctional preprote 77.5 22 0.00047 38.3 10.9 127 103-251 701-827 (855)
67 COG0573 PstC ABC-type phosphat 76.3 2 4.4E-05 40.7 2.6 30 160-189 192-221 (310)
68 TIGR03226 PhnU 2-aminoethylpho 75.5 69 0.0015 29.7 21.4 48 134-181 180-228 (312)
69 PRK11268 pstA phosphate transp 74.4 71 0.0015 29.4 12.4 43 143-185 162-205 (295)
70 PRK12911 bifunctional preprote 73.9 28 0.0006 39.3 10.6 67 130-211 960-1028(1403)
71 PRK10592 putrescine transporte 73.3 70 0.0015 29.2 11.9 53 136-188 142-199 (281)
72 COG2011 AbcD ABC-type metal io 72.6 19 0.00041 32.6 7.6 92 130-226 79-185 (222)
73 TIGR02138 phosphate_pstC phosp 72.6 15 0.00034 33.5 7.4 50 142-191 159-209 (295)
74 PRK15082 glutathione ABC trans 71.4 88 0.0019 29.1 15.6 45 138-182 166-212 (301)
75 PRK13023 bifunctional preprote 67.3 16 0.00035 38.8 7.0 116 103-244 306-423 (758)
76 PF00873 ACR_tran: AcrB/AcrD/A 66.7 56 0.0012 35.5 11.2 93 100-210 358-452 (1021)
77 PRK10998 malG maltose transpor 64.9 1.1E+02 0.0025 27.9 13.5 40 151-190 175-215 (296)
78 TIGR01253 thiP thiamine ABC tr 64.1 1.6E+02 0.0035 29.3 17.6 53 137-189 402-459 (519)
79 PRK09881 D-ala-D-ala transport 64.0 1.2E+02 0.0027 28.1 14.2 33 149-181 171-205 (296)
80 PF03176 MMPL: MMPL family; I 63.2 1.3E+02 0.0027 27.8 12.9 68 136-223 209-276 (333)
81 PHA01514 O-antigen conversion 62.2 1.5E+02 0.0033 30.0 12.4 32 116-147 308-339 (485)
82 PRK15127 multidrug efflux syst 60.8 93 0.002 34.2 11.5 36 171-210 424-459 (1049)
83 TIGR00914 2A0601 heavy metal e 60.3 1.6E+02 0.0034 32.4 13.1 35 171-209 434-468 (1051)
84 PRK15050 2-aminoethylphosphona 58.5 1.5E+02 0.0032 27.1 20.9 56 135-190 162-218 (296)
85 COG1178 ThiP ABC-type Fe3+ tra 58.0 2.2E+02 0.0048 29.0 16.1 97 133-230 407-518 (540)
86 COG4606 CeuB ABC-type enteroch 57.5 40 0.00086 31.9 6.9 38 115-152 122-159 (321)
87 TIGR03262 PhnU2 putative 2-ami 55.4 1.4E+02 0.003 29.8 11.0 54 135-188 410-468 (546)
88 PRK10683 putrescine transporte 55.1 1.8E+02 0.0039 27.0 21.9 48 135-182 185-233 (317)
89 COG0577 SalY ABC-type antimicr 54.9 99 0.0021 27.8 9.1 44 151-194 306-349 (419)
90 PRK10814 outer membrane-specif 53.9 31 0.00067 32.8 5.9 34 153-186 286-319 (399)
91 PRK10555 aminoglycoside/multid 53.6 1.3E+02 0.0029 32.9 11.3 36 171-210 424-459 (1037)
92 PRK10952 glycine betaine trans 51.8 2.3E+02 0.005 27.3 23.1 64 145-208 219-285 (355)
93 PRK09579 multidrug efflux prot 51.1 87 0.0019 34.3 9.3 37 171-211 416-452 (1017)
94 PRK10561 glycerol-3-phosphate 50.5 1.9E+02 0.0041 26.0 17.8 53 135-187 144-197 (280)
95 TIGR00915 2A0602 The (Largely 49.7 1.5E+02 0.0034 32.5 11.0 36 171-210 424-459 (1044)
96 COG2177 FtsX Cell division pro 49.1 64 0.0014 30.4 7.0 42 150-191 186-227 (297)
97 PLN02255 H(+) -translocating i 48.9 81 0.0017 33.6 8.3 55 140-194 590-646 (765)
98 COG1176 PotB ABC-type spermidi 48.1 21 0.00045 33.5 3.6 70 151-228 170-248 (287)
99 PRK13024 bifunctional preprote 47.6 87 0.0019 33.3 8.5 102 103-224 606-707 (755)
100 TIGR00969 3a0106s02 sulfate AB 47.5 2.1E+02 0.0046 25.7 20.2 49 133-181 141-190 (271)
101 TIGR02213 lolE_release lipopro 46.0 48 0.001 31.7 5.8 40 151-190 286-325 (411)
102 TIGR00002 S16 ribosomal protei 45.8 21 0.00046 27.2 2.7 30 156-185 46-75 (78)
103 PRK11146 outer membrane-specif 45.8 50 0.0011 31.5 5.9 40 151-190 287-326 (412)
104 TIGR01104 V_PPase vacuolar-typ 45.0 1E+02 0.0022 32.6 8.2 56 140-195 527-584 (697)
105 TIGR02212 lolCE lipoprotein re 44.5 66 0.0014 30.3 6.5 41 151-191 286-326 (411)
106 PRK14525 rpsP 30S ribosomal pr 43.5 23 0.00051 27.6 2.7 30 156-185 48-77 (88)
107 CHL00005 rps16 ribosomal prote 43.4 24 0.00052 27.2 2.7 29 157-185 46-74 (82)
108 TIGR00916 2A0604s01 protein-ex 41.5 68 0.0015 27.9 5.6 87 106-210 79-168 (192)
109 PF09913 DUF2142: Predicted me 41.3 89 0.0019 29.6 6.8 12 126-137 377-388 (389)
110 TIGR03416 ABC_choXWV_perm chol 41.2 2.8E+02 0.006 25.2 19.6 52 146-197 162-214 (267)
111 PRK13023 bifunctional preprote 40.9 1.4E+02 0.003 32.0 8.7 123 105-249 609-731 (758)
112 COG1174 OpuBB ABC-type proline 40.8 2.8E+02 0.0061 25.2 10.5 68 131-198 82-163 (221)
113 TIGR03434 ADOP Acidobacterial 40.7 3.8E+02 0.0083 27.8 11.9 38 153-190 700-737 (803)
114 TIGR03023 WcaJ_sugtrans Undeca 40.2 73 0.0016 31.0 6.2 8 167-174 131-138 (451)
115 PRK10913 dipeptide transporter 39.8 3.1E+02 0.0068 25.4 16.0 35 150-184 177-213 (300)
116 TIGR03480 HpnN hopanoid biosyn 39.6 3.5E+02 0.0075 28.9 11.6 14 171-184 354-367 (862)
117 PRK10614 multidrug efflux syst 38.9 1.4E+02 0.0031 32.6 8.7 38 170-211 416-453 (1025)
118 PRK00733 hppA membrane-bound p 38.5 1.5E+02 0.0032 31.3 8.2 55 140-194 502-558 (666)
119 TIGR00833 actII Transport prot 37.8 5.6E+02 0.012 27.7 13.8 68 136-223 239-306 (910)
120 PRK09577 multidrug efflux prot 36.8 3.4E+02 0.0073 29.9 11.1 37 171-211 423-459 (1032)
121 TIGR00659 conserved hypothetic 36.0 2.2E+02 0.0047 25.9 8.1 80 136-223 62-148 (226)
122 TIGR00915 2A0602 The (Largely 35.9 4.5E+02 0.0098 28.9 11.9 77 171-258 955-1036(1044)
123 PRK10503 multidrug efflux syst 35.6 2.9E+02 0.0062 30.5 10.4 71 171-249 950-1020(1040)
124 PRK15111 antimicrobial peptide 34.9 3.7E+02 0.008 24.8 16.6 69 147-215 171-253 (296)
125 PF07271 Cytadhesin_P30: Cytad 34.9 87 0.0019 29.4 5.4 39 129-167 67-116 (279)
126 COG1033 Predicted exporters of 34.2 6.1E+02 0.013 27.1 12.5 56 103-160 598-653 (727)
127 PRK10503 multidrug efflux syst 33.4 1.2E+02 0.0026 33.3 7.1 71 171-249 426-496 (1040)
128 PRK10555 aminoglycoside/multid 32.9 4.2E+02 0.0091 29.2 11.1 68 171-246 954-1021(1037)
129 COG4174 ABC-type uncharacteriz 32.6 89 0.0019 29.7 5.1 80 130-222 227-306 (364)
130 PF01889 DUF63: Membrane prote 30.8 4.5E+02 0.0097 24.6 11.1 58 32-89 42-108 (273)
131 TIGR03434 ADOP Acidobacterial 30.8 2E+02 0.0044 29.8 8.0 40 150-189 290-329 (803)
132 COG0341 SecF Preprotein transl 30.7 1.8E+02 0.004 27.6 7.0 93 105-216 165-257 (305)
133 COG1033 Predicted exporters of 30.4 2.5E+02 0.0055 29.9 8.6 96 103-221 226-322 (727)
134 PRK15127 multidrug efflux syst 30.2 5.4E+02 0.012 28.4 11.4 65 171-244 957-1022(1049)
135 PRK10973 glycerol-3-phosphate 29.9 4.3E+02 0.0094 24.1 9.8 30 160-189 170-203 (281)
136 PF09527 ATPase_gene1: Putativ 29.3 1.8E+02 0.004 19.8 5.2 37 57-94 19-55 (55)
137 PLN02277 H(+) -translocating i 27.8 65 0.0014 34.2 3.7 35 134-168 544-587 (730)
138 COG0228 RpsP Ribosomal protein 27.5 76 0.0016 24.8 3.2 30 156-185 48-77 (87)
139 PF04018 DUF368: Domain of unk 26.9 5.1E+02 0.011 23.9 14.0 103 49-155 62-168 (257)
140 PRK14522 rpsP 30S ribosomal pr 26.5 67 0.0015 26.4 2.8 31 156-186 47-77 (116)
141 PRK14524 rpsP 30S ribosomal pr 26.5 64 0.0014 25.5 2.7 30 156-185 47-76 (94)
142 PF03030 H_PPase: Inorganic H+ 25.5 3.5E+02 0.0076 28.7 8.5 68 141-215 528-597 (682)
143 PF13829 DUF4191: Domain of un 24.4 3.4E+02 0.0073 24.8 7.2 29 39-67 22-50 (224)
144 PRK08343 secD preprotein trans 24.3 7E+02 0.015 24.6 10.4 35 173-211 346-380 (417)
145 TIGR00921 2A067 The (Largely A 23.2 8.3E+02 0.018 25.1 14.4 84 103-203 223-306 (719)
146 PF04306 DUF456: Protein of un 23.2 4.4E+02 0.0095 21.9 9.8 16 55-70 11-26 (140)
147 PF11630 DUF3254: Protein of u 22.6 79 0.0017 25.3 2.5 17 175-191 74-90 (100)
148 TIGR00914 2A0601 heavy metal e 21.2 4.1E+02 0.009 29.2 8.5 61 131-210 938-998 (1051)
149 PRK00040 rpsP 30S ribosomal pr 21.0 70 0.0015 24.1 1.8 26 156-181 49-74 (75)
150 TIGR00946 2a69 he Auxin Efflux 20.9 6.6E+02 0.014 23.1 12.7 86 7-94 203-292 (321)
151 COG4176 ProW ABC-type proline/ 20.9 72 0.0016 30.1 2.2 22 160-181 183-204 (290)
152 PRK15021 microcin C ABC transp 20.6 7.5E+02 0.016 23.7 17.2 26 160-185 231-257 (341)
153 PRK12911 bifunctional preprote 20.6 4.7E+02 0.01 30.0 8.6 124 104-248 1264-1391(1403)
154 PRK10971 sulfate/thiosulfate t 20.3 6.3E+02 0.014 22.6 25.4 60 134-193 140-200 (277)
No 1
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=100.00 E-value=2.6e-77 Score=541.03 Aligned_cols=243 Identities=35% Similarity=0.611 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCChH--HHHHHHHHHHHHHHHHHhhhcC
Q 024490 17 IKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRG--WIILAYLFMVIVAGYTAGQRAK 94 (267)
Q Consensus 17 ~~~~~a~~lv~~~~~is~~~~lgl~r~l~ia~~R~~vQL~~vG~vL~~if~~~~~~--~~~l~~l~M~~~As~~a~~R~~ 94 (267)
.++..+++++++++.+++++|+|++||+++|++||++||.++||+|+|+|+.||+| +++++.++|..+|++++.+|.+
T Consensus 4 ~~l~~~~~lv~~~~~i~~~~~lgl~k~l~iA~~R~~vQL~~vG~vL~~iF~~~~~~~~~~~l~ml~m~~~a~~~~~~r~~ 83 (248)
T TIGR00245 4 ISLTLALIFVIIAILLSYREKLGLEKDILWASIRAIIQLIIVGYVLLYIFSFDMPGAFLMLLMMLTIAAVAAMNEINRSK 83 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45566778999999999999999999999999999999999999999999999999 6666667888889999988877
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCH
Q 024490 95 HVPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATP 174 (267)
Q Consensus 95 ~~~~~~~~~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~ 174 (267)
+.++.++.++.++.+|+.+++.++++.+..||||||+||++||++||+||++++++|||++|+++|+||||++|+|||||
T Consensus 84 ~~~~~~~~~~~s~~~~~~~~l~~~vl~~~~~~~p~y~IPl~GMiiGNsM~a~sLa~~rl~~~l~~~~~~ie~~LaLGat~ 163 (248)
T TIGR00245 84 NKTGLFWCSFIAFTTTTIVTLAVLIIPKVIKFEPIYVIPLMGMVIGNTMNTISLALNRLISMVKSERDEIQGYLSLGATP 163 (248)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCH
Confidence 55655555778988999888887777777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 024490 175 RQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFT 254 (267)
Q Consensus 175 ~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~r~~F~ 254 (267)
|||.+|++|+|+|+|++|++|+|+++|+|++|||||||||||+||++|+||||+||++|++++++|++++++++||++||
T Consensus 164 ~~A~~~~~r~Ai~aaliP~insm~~vGlV~LPGmMtGqIL~G~~Pl~Av~yQivIm~~i~~s~~ls~~~~~~l~~r~~f~ 243 (248)
T TIGR00245 164 KQAIAPFIRNAIKASLIPTVNSTKTVGLVSLPGMMTGQILAGADPIYAAEYQILIMFMILSSAVLSTIIICYLTYREIFN 243 (248)
T ss_pred HHHHHHHHHHHHHHHhhchHHhcchhheeechhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 024490 255 KAYQL 259 (267)
Q Consensus 255 ~~~qL 259 (267)
+++|+
T Consensus 244 ~~~ql 248 (248)
T TIGR00245 244 AHQQL 248 (248)
T ss_pred HhhcC
Confidence 99996
No 2
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=100.00 E-value=2e-75 Score=529.36 Aligned_cols=240 Identities=40% Similarity=0.731 Sum_probs=223.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 024490 16 MIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKH 95 (267)
Q Consensus 16 ~~~~~~a~~lv~~~~~is~~~~lgl~r~l~ia~~R~~vQL~~vG~vL~~if~~~~~~~~~l~~l~M~~~As~~a~~R~~~ 95 (267)
..++.++++++++++++++++|+|++||+++|++||++||.++|++|+|+|+.||+|++++++++|..+|++++.+|.|.
T Consensus 9 ~~~l~~a~~lv~i~~~is~~~~L~l~~~l~~a~~R~~vQL~~vG~vL~~if~~~~~~~~~l~~~~M~~~As~~a~~r~~~ 88 (250)
T PF03649_consen 9 WLQLALALLLVLIAIAISYRLRLGLERDLLIASLRMVVQLLLVGYVLHYIFKLNNPWLVILWLLVMILVASFTAARRAKL 88 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34555677799999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcchHHH--HHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCC
Q 024490 96 VPRGKYVA--GASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGAT 173 (267)
Q Consensus 96 ~~~~~~~~--~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt 173 (267)
++++++.. ++++..++.+++..+++.+..||||||+||++||++||+||++++++|||++|+++|+||||++|+||||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~v~l~~lvl~~~~~~~~r~~IPi~GMiiGNsm~a~slal~r~~~~l~~~~~~ie~~LalGat 168 (250)
T PF03649_consen 89 RPKGLFFPVLALSLGAGTIVTLLLLVLRGAPWFDPRYLIPIAGMIIGNSMNAVSLALERFYSELRERRDEIEALLALGAT 168 (250)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCC
Confidence 87766653 3455555556665666667778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024490 174 PRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFF 253 (267)
Q Consensus 174 ~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~r~~F 253 (267)
||||.+|++|+|+|++++|++|+|+++|+|++|||||||||||+||++|++||++||+++++++.+|+++++++.||++|
T Consensus 169 ~~eA~~~~~r~ai~~al~P~i~~m~~vGlVslPGmMtG~IL~G~sP~~Av~yQi~Im~~i~as~~lss~~~~~l~~r~~f 248 (250)
T PF03649_consen 169 PREAVRPFIRRAIRAALIPTINSMKTVGLVSLPGMMTGQILGGASPLQAVRYQIVIMFMILASSSLSSVLATLLVYRRYF 248 (250)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHhhhhhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc
Q 024490 254 TK 255 (267)
Q Consensus 254 ~~ 255 (267)
|.
T Consensus 249 ~~ 250 (250)
T PF03649_consen 249 NQ 250 (250)
T ss_pred CC
Confidence 84
No 3
>COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=100.00 E-value=1.3e-74 Score=515.99 Aligned_cols=245 Identities=38% Similarity=0.657 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhh-cCC
Q 024490 17 IKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQR-AKH 95 (267)
Q Consensus 17 ~~~~~a~~lv~~~~~is~~~~lgl~r~l~ia~~R~~vQL~~vG~vL~~if~~~~~~~~~l~~l~M~~~As~~a~~R-~~~ 95 (267)
.++..+++|+++++++|+++|+|+|||++||+.|+++||+++||+|+|+|+.||+|.+++++++|..+|++++.|| .|+
T Consensus 9 ~~l~~a~~lv~iai~is~~egl~lEk~il~a~~RtvvQLli~GfvL~yIf~~~~~~~~ll~v~vm~~~Aa~~~~~rl~k~ 88 (256)
T COG0390 9 LSLGLAYLLVVVAILISHKEGLGLEKDILVASIRTVVQLLILGFVLSYIFALDNPALTLLMVLVMLTIAAYNARKRLSKK 88 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445577799999999999999999999999999999999999999999999999999999999999999999999 555
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHH
Q 024490 96 VPRGKYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPR 175 (267)
Q Consensus 96 ~~~~~~~~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~ 175 (267)
..+.++..++++++++...+..+++.+..+|+|||+||++||++||+|++.+++.||+.+++.+++||+|+.|||||||+
T Consensus 89 ~~~~f~~~flai~~s~~~~~~vlv~~~~~~~~p~yvIPi~GMIlGNtm~~~~L~~~~l~~~i~~~~~eie~~LsLGaTp~ 168 (256)
T COG0390 89 ILKLFILVFLAIFVSTLVYLLVLVLRGRIWFEPRYVIPIAGMILGNTMVGVSLAYERLVSEIISEKDEIEAKLSLGATPK 168 (256)
T ss_pred hhhhHHHHHHHHHHHHhHhheeeEeccCCCCCCceeeehhhhhhcchhhhhhhHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 55566667889988877777667777778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCc
Q 024490 176 QATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTK 255 (267)
Q Consensus 176 eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~r~~F~~ 255 (267)
||.+++.|+|+|+|++|++||||++|+|++||||||||++|+||++|+||||+|||++++++++|+.+++|++||.+||+
T Consensus 169 ~A~~~~~r~Air~aliPtins~k~vGlVslPGmmtG~ilAG~~Pl~Ai~yQIvImf~ll~s~~ls~ii~~yL~yr~~Fn~ 248 (256)
T COG0390 169 EASRPYIRSAIRAALIPTINSMKTVGLVSLPGMMTGLILAGVDPLTAIRYQIVIMFLLLASAALSTIIAAYLAYRAFFNR 248 (256)
T ss_pred HHHHHHHHHHHHHhhhccchhhheeceeecchHHHhhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q 024490 256 AYQLES 261 (267)
Q Consensus 256 ~~qL~~ 261 (267)
+|||..
T Consensus 249 ~~qLv~ 254 (256)
T COG0390 249 AHQLVV 254 (256)
T ss_pred HhhHhc
Confidence 999964
No 4
>PRK11122 artM arginine transporter permease subunit ArtM; Provisional
Probab=96.06 E-value=0.27 Score=43.35 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=45.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccc
Q 024490 138 MVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDN 196 (267)
Q Consensus 138 llGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~ 196 (267)
++.-+.+..+--.+.+.+++++ +++.+|++.+.|+|+||..+-.+.++++.++-|-.|+
T Consensus 95 ~~~l~l~~~~~~~~i~~~~l~~i~~~~~eaA~a~G~s~~q~~~I~lP~~l~~~l~~~~~~ 154 (222)
T PRK11122 95 MLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLRILLPYAFKRALSSYSNE 154 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHHHcCCCHhHhhhhhHHHHHHHHhhHHHHH
Confidence 3444555666677788888875 5677999999999999998755678888888887333
No 5
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=96.05 E-value=0.13 Score=46.49 Aligned_cols=180 Identities=18% Similarity=0.233 Sum_probs=105.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhcCCCCcchHH-HHHHHHHHHH-HHHHHH
Q 024490 41 EGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYV-AGASILAGTA-VTMLML 118 (267)
Q Consensus 41 ~r~l~ia~~R~~vQL~~vG~vL~~if~~~~~~~~~l~~l~M~~~As~~a~~R~~~~~~~~~~-~~~si~~~~~-~~l~~~ 118 (267)
..+.+......++.+.+.|.++..++. +..| ..|+.+.+.-++.. ..+.++=++= ++..++
T Consensus 14 ~~~~ll~G~~~TL~lt~~~~~~g~vlG--------------~~la---~~r~s~~~~l~~~~~~Yv~~~RgtPlLvqlf~ 76 (222)
T COG0765 14 YLPFLLKGLLVTLLLTLLSIVLGLVLG--------------LLLA---LMRLSGNKPLRWLARAYVEIFRGTPLLVQLFF 76 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH---HHHHCCcHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 345667777778888888888777764 0111 11333321111111 1223222211 112222
Q ss_pred HHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHH-HHHHHhhcccccc
Q 024490 119 VVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVK-RSLVIALSPVLDN 196 (267)
Q Consensus 119 ~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r-~Ai~~al~P~i~~ 196 (267)
+..+..|.-+-.+=|..--++|=++|.-+-..|-++++++. ++++.|++.|+|-|++|..+.++= ||+|..+=|..|+
T Consensus 77 ~yfg~lp~~g~~~~~~~aaiial~l~~~AY~aEi~R~GI~aVpkGQ~EAA~aLGls~~q~~r~IIlPQAlr~~lP~l~n~ 156 (222)
T COG0765 77 IYFGLLPLLGIELDPFTAAVIALSLNSGAYLAEIVRAGIQSVPKGQWEAARALGLTYWQTMRYVILPQALRVILPPLGNQ 156 (222)
T ss_pred HHHHhHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHHHcCCCHhhHHHheehhhhHHHhhhHhHHH
Confidence 23333333334445577778888899999999999999965 889999999999999999999765 9999998888776
Q ss_pred c----chhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Q 024490 197 A----KTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTV 239 (267)
Q Consensus 197 m----~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~l 239 (267)
. |...+++.=|.. -+..-+.-+++..||-.-.+.+.+.--+
T Consensus 157 ~i~liK~TSl~svIgv~--EL~~~a~~i~~~t~~~~e~~~~~a~iY~ 201 (222)
T COG0765 157 FISLIKDTSLVSVIGVV--ELTRAAQIIAARTFRPFEVYLLAALIYL 201 (222)
T ss_pred HHHHHHHhHHHHHHHHH--HHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4 444444443321 1112223344445555555544444333
No 6
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed
Probab=95.29 E-value=0.77 Score=40.49 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=45.3
Q ss_pred hhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHH-HHHHHhhccc
Q 024490 132 IPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVK-RSLVIALSPV 193 (267)
Q Consensus 132 IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r-~Ai~~al~P~ 193 (267)
-|..+.+++-+.+...-..|-+++++++ +++.+|++.++|+|++|..+..+= ++++..+-|.
T Consensus 88 ~~~~~~il~l~l~~~~~~a~~~r~~~~sv~~~~~eAA~~lG~s~~q~~~~iilP~a~~~~~p~~ 151 (219)
T PRK09494 88 DPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPL 151 (219)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHH
Confidence 3555566777777777777888888865 667799999999999999877755 4555444443
No 7
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB. This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=94.99 E-value=2.5 Score=39.48 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHHHHHHHHH--HhHHHHHHHHHCCCCHHHHHH-HHHHHHHHH
Q 024490 148 VTMKRLRDDIK--IQLNLVETALALGATPRQATK-QQVKRSLVI 188 (267)
Q Consensus 148 lal~r~~~~l~--~~~~~ie~~LalGAt~~eA~~-~~~r~Ai~~ 188 (267)
.-.+..+++.. .+++.+|++.+.|.|+++... ..+|+|+..
T Consensus 190 ~~~r~~R~~~~~~~~~~yv~~Ara~Gls~~~i~~~hiLpnal~~ 233 (314)
T TIGR02789 190 IYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILP 233 (314)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHcCCCcceehHHHhHHhhHHH
Confidence 33444555543 367779999999999998754 444554443
No 8
>PRK10782 DL-methionine transporter permease subunit; Provisional
Probab=94.58 E-value=2.9 Score=36.50 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=50.6
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccc--------ccccchhheee
Q 024490 134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPV--------LDNAKTVGLIS 204 (267)
Q Consensus 134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~--------i~~m~~vGlVs 204 (267)
..+.++.-+........+.+.+++++ +++.+|++.++|+|+++..+..+-+.....+.|. +......|.+.
T Consensus 89 ~~~~il~l~l~~~~~~~~~~~~~l~~v~~~~~eaA~~~G~s~~~~~~~vilP~~~p~i~~~~~~~~~~~~~~t~l~~~ig 168 (217)
T PRK10782 89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVG 168 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHcCCCHHHHhHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556666666666666666666655 5566899999999999998776444433333333 23335566777
Q ss_pred chHHHHH
Q 024490 205 LPGAMTG 211 (267)
Q Consensus 205 lPGmMtG 211 (267)
.||+++=
T Consensus 169 ~~~lg~~ 175 (217)
T PRK10782 169 AGGLGQI 175 (217)
T ss_pred cchHHHH
Confidence 7777654
No 9
>PRK10417 nikC nickel transporter permease NikC; Provisional
Probab=94.48 E-value=3.1 Score=38.20 Aligned_cols=107 Identities=15% Similarity=0.018 Sum_probs=53.0
Q ss_pred HHHHHHHHH--hHHHHHHHHHCCCCHHHHHHH-HHHHHHHHhh------cc----cccccchhhee-echHHHHHHHHcC
Q 024490 151 KRLRDDIKI--QLNLVETALALGATPRQATKQ-QVKRSLVIAL------SP----VLDNAKTVGLI-SLPGAMTGMIMGG 216 (267)
Q Consensus 151 ~r~~~~l~~--~~~~ie~~LalGAt~~eA~~~-~~r~Ai~~al------~P----~i~~m~~vGlV-slPGmMtGqILgG 216 (267)
+-.+++..+ +++-+|++.+.|+++++-... +++++...-+ +| +..+++-.|+. .-|---+|.+++-
T Consensus 146 r~~r~~~~~~~~~~yv~aAra~G~s~~~i~~~hiLP~~~p~ii~~~~~~~~~~il~~a~LsflGlg~~~~~~~wG~mi~~ 225 (272)
T PRK10417 146 RMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMIND 225 (272)
T ss_pred HHHHHHHHHHHhhHHHHHHHHcCCCchhhHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Confidence 334554433 567799999999999987653 3333332111 11 12445566665 3455566777765
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccc
Q 024490 217 ASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAY 257 (267)
Q Consensus 217 ~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~r~~F~~~~ 257 (267)
+..........++.=.++-...+-++-.+--+.|+.+|++.
T Consensus 226 ~~~~~~~~~w~~~~P~~~i~~~~~~~~l~g~~l~~~~~p~~ 266 (272)
T PRK10417 226 ARQYIWTQPLLMFWPGLALFISVMAFNLLGDALRDHLDPHL 266 (272)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 54432222222222122212222222222344577777653
No 10
>PRK15100 amino acid ABC transporter permease; Provisional
Probab=94.29 E-value=2.9 Score=36.91 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=48.5
Q ss_pred hhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccc
Q 024490 132 IPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPV 193 (267)
Q Consensus 132 IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~ 193 (267)
-|..+.+++-.++...-..+-+++++++ +++.+|++.++|+|++|..+.++=......+.|.
T Consensus 86 ~~~~~~i~~l~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~VilP~~~p~~~~~ 148 (220)
T PRK15100 86 DPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPP 148 (220)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777888777778888888866 5567999999999999999887776666666663
No 11
>PRK15135 histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Provisional
Probab=93.67 E-value=4.6 Score=35.51 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=36.5
Q ss_pred HHHHHHHHHH-HhHHHHHHHHHCCCCHHHHHHHHHH-HHHHHhhccccc----ccchhheeechH
Q 024490 149 TMKRLRDDIK-IQLNLVETALALGATPRQATKQQVK-RSLVIALSPVLD----NAKTVGLISLPG 207 (267)
Q Consensus 149 al~r~~~~l~-~~~~~ie~~LalGAt~~eA~~~~~r-~Ai~~al~P~i~----~m~~vGlVslPG 207 (267)
-.|-++++++ .+++.+|++.++|+|+||..+..+= ++.+.++-+..| ..|...+++.-|
T Consensus 108 ~~~~~r~~l~~v~~~~ieaA~~lG~s~~~i~~~vilP~~~~~~~p~~~~~~i~~ik~~sl~s~ig 172 (228)
T PRK15135 108 FTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATALVSLLG 172 (228)
T ss_pred HHHHHHHHHhcCCHhHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455556543 3678899999999999999876655 445544444433 234444444443
No 12
>CHL00187 cysT sulfate transport protein; Provisional
Probab=93.56 E-value=4.8 Score=35.75 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=39.5
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHH
Q 024490 134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQV 182 (267)
Q Consensus 134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~ 182 (267)
..|++++.+........+.+++.+++ +++.+|++..+|+|++|..+.++
T Consensus 137 ~~~~il~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~ii 186 (237)
T CHL00187 137 KLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVI 186 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHcCCChheeeeeee
Confidence 45788888888888888888887766 66779999999999998765443
No 13
>PRK10352 nickel transporter permease NikB; Provisional
Probab=93.38 E-value=7.1 Score=36.76 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=26.6
Q ss_pred hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 024490 160 QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAK 198 (267)
Q Consensus 160 ~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m~ 198 (267)
++|-++++.+.|.++++-.. |.++|.++.|.+..+.
T Consensus 204 ~~dyV~~ArakGl~~~~I~~---~H~lrnal~piit~~~ 239 (314)
T PRK10352 204 GQRHVTWARLRGLSERQVER---RHILRNASLPMITAVG 239 (314)
T ss_pred chHHHHHHHHcCCCcceehH---HhhHHhhHHHHHHHHH
Confidence 55679999999999986543 4566667788776443
No 14
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=93.20 E-value=5.7 Score=37.03 Aligned_cols=35 Identities=34% Similarity=0.431 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccc
Q 024490 159 IQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDN 196 (267)
Q Consensus 159 ~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~ 196 (267)
.++|-+|++.+.|.++|+- +.|..++.++.|.+..
T Consensus 201 ~~~~yv~~Ara~G~s~~~i---~~~hil~na~~p~it~ 235 (306)
T PRK09471 201 LHSNFIRTARAKGLPMRRI---ILRHALKPALLPVLSY 235 (306)
T ss_pred HcCHHHHHHHHcCCCccee---hHHHhHHhhHHHHHHH
Confidence 3667799999999999854 2455666788888754
No 15
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD. Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Probab=93.12 E-value=5.4 Score=34.63 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc-cccccc-------hhheeechHHH-HH
Q 024490 142 AMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSP-VLDNAK-------TVGLISLPGAM-TG 211 (267)
Q Consensus 142 sm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P-~i~~m~-------~vGlVslPGmM-tG 211 (267)
++...+...+.+.+++++ +++.+|++.++|+|++|..+.++-......++| ..|+.. .+..+..+.++ .+
T Consensus 94 ~l~~~~~~~~~~r~~l~~v~~~~~eaA~alG~s~~~~~~~iilP~a~~~il~~~~~~~~~~~k~t~~~~~i~~~e~~~~~ 173 (212)
T TIGR03003 94 GLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLELMNQA 173 (212)
T ss_pred HHHHHHHHHHHHHHHHHcCCHhHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334444444555555543 667899999999999999876655444444444 444433 23444455544 34
Q ss_pred HHHcC
Q 024490 212 MIMGG 216 (267)
Q Consensus 212 qILgG 216 (267)
|-++.
T Consensus 174 ~~i~~ 178 (212)
T TIGR03003 174 KSIGN 178 (212)
T ss_pred HHHHH
Confidence 55554
No 16
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=92.81 E-value=1.1 Score=34.27 Aligned_cols=48 Identities=27% Similarity=0.295 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccc
Q 024490 149 TMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDN 196 (267)
Q Consensus 149 al~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~ 196 (267)
-..-.....++|++|+..+.++|+|++|-.+.+..|.+-.++.+.+-.
T Consensus 15 ~~~~~~~~~~~~~~~~~il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g 62 (121)
T PF02687_consen 15 LFNIISSSIRERRREIAILRALGASKRQIRKMFLYEALLIALIGILIG 62 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 345567778899999999999999999999999999888777665543
No 17
>TIGR01097 PhnE phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context).
Probab=92.81 E-value=6.8 Score=35.00 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=48.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc--------cccccchhheeechHH
Q 024490 140 GNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSP--------VLDNAKTVGLISLPGA 208 (267)
Q Consensus 140 GNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P--------~i~~m~~vGlVslPGm 208 (267)
.-+..+..-..+-+.+.+++ +++.+|++.+.|+|++|.....+=..++..+.. .+..-..+|++..+|.
T Consensus 132 ~i~i~~~~~~~~~~~~~l~~i~~~~~eaa~~~Gas~~q~~~~iilP~~~p~i~~~~~~~f~~~i~~~~~l~~vg~ggi 209 (250)
T TIGR01097 132 ALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLSYTLYRFEINVRAAAVLGLVGAGGI 209 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHcCCCHHHHhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence 33444555556666677755 556699999999999999988777777777666 5555566677766653
No 18
>PRK15069 histidine/lysine/arginine/ornithine ABC transporter permease HisM; Provisional
Probab=92.39 E-value=8 Score=34.75 Aligned_cols=85 Identities=12% Similarity=0.114 Sum_probs=59.7
Q ss_pred hhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHH-HHHHHhhcccccc-------cchhhe
Q 024490 132 IPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVK-RSLVIALSPVLDN-------AKTVGL 202 (267)
Q Consensus 132 IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r-~Ai~~al~P~i~~-------m~~vGl 202 (267)
-|....+++-+.+..+-..|-+++++++ ++++.|++.++|+|++|..+.++= ++++.++=|..|+ .+-+-.
T Consensus 100 ~~~~~~ii~l~l~~~~~~~e~~r~g~~~v~~~~~EaA~~lG~s~~q~~~~IilP~a~~~~lP~l~n~~i~l~K~tsl~~~ 179 (234)
T PRK15069 100 SGLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRALPAYSNEVILMLHATTLAFT 179 (234)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3566667777888888888999999976 778899999999999999988766 4445444443332 333334
Q ss_pred eechHHH-HHHHHcC
Q 024490 203 ISLPGAM-TGMIMGG 216 (267)
Q Consensus 203 VslPGmM-tGqILgG 216 (267)
++.|-+| .+|..+.
T Consensus 180 i~v~El~~~a~~~~~ 194 (234)
T PRK15069 180 ATVPDILKIARDINS 194 (234)
T ss_pred HHHHHHHHHHHHHHH
Confidence 7777766 4444443
No 19
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW. This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present.
Probab=92.31 E-value=1.4 Score=39.57 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=42.5
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHH----HHHHHHHHHh
Q 024490 133 PVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATK----QQVKRSLVIA 189 (267)
Q Consensus 133 Pi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~----~~~r~Ai~~a 189 (267)
...|+++++......-+.+-+++.+++ +++.+|++..+|+|++|..+ |..|.++-++
T Consensus 128 ~~~~vil~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~~Gas~~~~~~~I~lP~~~p~i~~~ 189 (261)
T TIGR02140 128 SLPGIVLATMFVTCPFVARELIPVMEEQGTEQEEAALTLGASWWQTFWRVTLPNIKWGLLYG 189 (261)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHhcCCCcceeeeeeehhcchHHHHHH
Confidence 356789999888777777777777755 56668999999999999874 4455555444
No 20
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed
Probab=91.83 E-value=8.4 Score=33.82 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=39.9
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHH
Q 024490 134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRS 185 (267)
Q Consensus 134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~A 185 (267)
..|.+++..........+..++.+++ +++.+|++..+|+++||....+.=..
T Consensus 92 ~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~G~s~~~~~~~I~lP~ 144 (229)
T PRK09421 92 WRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPL 144 (229)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHcCCChhhhhhhhhhHh
Confidence 34566777777777777788888866 77889999999999999877554433
No 21
>PRK09433 thiP thiamine transporter membrane protein; Reviewed
Probab=91.78 E-value=13 Score=36.98 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=42.3
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 024490 134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLV 187 (267)
Q Consensus 134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~ 187 (267)
..++++.+.......+..-+.+.+++ +++..|++..+||+++|....+.-..++
T Consensus 395 ~~~lil~~~~~~~p~~~~~~~~~l~~i~~~l~EAA~~~Gas~~~~~~~I~lPll~ 449 (525)
T PRK09433 395 LGIVILTNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALR 449 (525)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHcCCchhhHHHHhhHHhhh
Confidence 45688888888888888888888877 4555899999999999988755444333
No 22
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Probab=91.30 E-value=2.9 Score=36.45 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=43.3
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc
Q 024490 134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSP 192 (267)
Q Consensus 134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P 192 (267)
..+++++.+.....-....+++.+++ +++.+|++..+|+++||..+.+.-+..+.++..
T Consensus 103 ~~~~il~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~~Gas~~~~~~~v~lP~~~p~i~~ 162 (225)
T TIGR01581 103 TLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLA 162 (225)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHhhHHHHHH
Confidence 34677777777777676777777765 667799999999999999877766655544443
No 23
>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC. Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.
Probab=90.75 E-value=11 Score=33.12 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=40.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccc
Q 024490 138 MVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPVL 194 (267)
Q Consensus 138 llGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i 194 (267)
++.-+.+......+-+.+++++ +++++|++.++|+|++|..+.++=......++|.+
T Consensus 84 ii~l~~~~~~~~~~~~r~~l~~v~~~~~eAA~~~G~s~~q~~~~vilP~a~p~il~~~ 141 (214)
T TIGR03004 84 VMVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAF 141 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcCHHHHHHHHhHHHhHHHHHHHH
Confidence 3334444445555667777755 56668999999999999998877766666666654
No 24
>PRK15107 glutamate/aspartate transport system permease GltK; Provisional
Probab=90.44 E-value=12 Score=32.89 Aligned_cols=59 Identities=27% Similarity=0.256 Sum_probs=45.7
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccc
Q 024490 136 GMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPVL 194 (267)
Q Consensus 136 GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i 194 (267)
..++.-.........+-+++++++ +++.+|++.++|+|+||..+.+.-..++..+.|.+
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~l~~i~~~~~EAA~~~Gas~~~~~~~I~lP~~~~~i~~~~ 158 (224)
T PRK15107 99 SAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLL 158 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCCHHHHhhhhhHhhhHHHHhHHH
Confidence 444555555555566777788865 56679999999999999999999888888888875
No 25
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism]
Probab=90.09 E-value=14 Score=33.22 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=56.3
Q ss_pred HHHHHhccCCC-CccchhhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 024490 116 LMLVVLNVFPF-TPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSL 186 (267)
Q Consensus 116 ~~~~~~~~~~~-~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai 186 (267)
.++++++..|+ +=+-+-...||++|.+.-..-+-..-+.+.+++ ++..-|..-++|+|+-+-...++|++=
T Consensus 80 LylLlSr~GPlG~f~LLfT~~amILGq~iL~lPlvia~~l~ale~~dpr~~ela~~lgas~~kl~~t~~~Ear 152 (227)
T COG4662 80 LYLLLSRSGPLGWFNLLFTQDAMILGQAILILPLVIAFVLTALESVDPRLKELARSLGASPLKLASTVFREAR 152 (227)
T ss_pred HHHHHhccCCCccchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 44567788885 567777889999999998887777777777765 445579999999999988888888763
No 26
>PRK15110 antimicrobial peptide ABC transporter permease SapB; Provisional
Probab=89.22 E-value=17 Score=34.13 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=31.0
Q ss_pred HHHHHHHHHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 024490 149 TMKRLRDDIKI--QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAK 198 (267)
Q Consensus 149 al~r~~~~l~~--~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m~ 198 (267)
..+-.+++..+ ++|-+|++.+.|.++++-.. |-.++.++.|.+..+.
T Consensus 198 ~~r~~R~~~l~~~~~~yV~~Ara~G~s~~~i~~---rhilpnal~piit~~~ 246 (321)
T PRK15110 198 VIRLMRISTIEVYDQNYVKAAATRGLSRFTILR---RHVLHNALPPVIPRLG 246 (321)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHcCCChhHhhH---HHhHHhhHHHHHHHHH
Confidence 33444444433 45669999999999997654 4456667777776543
No 27
>TIGR02141 modB_ABC molybdate ABC transporter, permease protein. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model.
Probab=89.16 E-value=8.2 Score=32.98 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=39.3
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 024490 135 AGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLV 187 (267)
Q Consensus 135 ~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~ 187 (267)
.+.++.++..........+++.+++ ++|.+|++.+.|++++|-.+.+.-+.++
T Consensus 81 ~~~ii~~~~~~~p~~~~~~~~~~~~i~~~~~eaA~~~Ga~~~~~~~~i~lP~~~ 134 (208)
T TIGR02141 81 AGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASEIQTFLKVTLPLAF 134 (208)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhCCHHHHHHHHHcCCCccchhhhhhHHhhh
Confidence 4567777777777777777777766 6778999999999999877655444333
No 28
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=89.12 E-value=13 Score=35.23 Aligned_cols=61 Identities=25% Similarity=0.243 Sum_probs=39.7
Q ss_pred cchhhhhhHHhhhhHHHHHHHHHHHHHHHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccc
Q 024490 129 RYIIPVAGMMVGNAMTVTGVTMKRLRDDIKI--QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDN 196 (267)
Q Consensus 129 ry~IPi~GMllGNsm~a~slal~r~~~~l~~--~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~ 196 (267)
+++.|+.-..+.+.- ..+ +..++++.+ ++|-++++.+-|.++++-.. |-++|.|++|.+..
T Consensus 182 h~iLP~~~L~~~~~a-~~~---r~~R~~~~e~l~~dyV~~AraKGl~~~~i~~---~H~lrNaliP~it~ 244 (317)
T COG0601 182 HLILPALTLGLVSLA-GIA---RLTRSSMLEVLNQDYVRTARAKGLSERRILF---KHALRNALLPVITV 244 (317)
T ss_pred HHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHhHHHHHHHHCCCCcceehH---HhhhHhhHHHHHHH
Confidence 556777665554432 222 333333322 44669999999999986654 56888999999853
No 29
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=89.12 E-value=2.4 Score=39.55 Aligned_cols=123 Identities=18% Similarity=0.236 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhH--HhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHH
Q 024490 103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGM--MVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ 180 (267)
Q Consensus 103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GM--llGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~ 180 (267)
+.+++......++..+.+.| .|++. .-++|+ ++|=+.+...+-.||++++.++++ |.+.+|+
T Consensus 156 ~ilal~~~v~~~lg~~~l~g-~~l~~---~siaall~liG~sVnd~Ivv~drire~~~~~~---------~~~~~~a--- 219 (289)
T PRK13022 156 AIIALLHDVIITLGIFSLFQ-IEFDL---TVIAALLTIIGYSLNDTVVVFDRIRENFRKIR---------RKTFAEI--- 219 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CcccH---HHHHHHHHHHHHheeceEEEeeHHHHHHhhcc---------CCCHHHH---
Confidence 34455555555555555544 34442 223333 347777777778899988876541 2344444
Q ss_pred HHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024490 181 QVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCW 249 (267)
Q Consensus 181 ~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~ 249 (267)
+++|++..+.|++++.-|.-+..+|=+.. |.+++.-. -+.+++.++++...|.+++--+.+
T Consensus 220 -v~~a~~~~~~~~l~TslTTl~~~l~L~~~-----g~~~i~~f--a~~l~~Gli~~~~~sl~i~p~l~~ 280 (289)
T PRK13022 220 -INLSINQTLSRTIITSLTTLLVVLALYLF-----GGGTLHDF--ALALLIGIIVGTYSSIFVASPLLL 280 (289)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778889999999999999996543 44554443 355666777776666666555443
No 30
>PRK09433 thiP thiamine transporter membrane protein; Reviewed
Probab=88.74 E-value=27 Score=34.79 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=44.8
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHH----HHHHHHHhh
Q 024490 134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQ----VKRSLVIAL 190 (267)
Q Consensus 134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~----~r~Ai~~al 190 (267)
..|++++++.........-+.+.+++ +++.+|++..+||++||..+.+ +|.++-.+.
T Consensus 129 ~~~iii~~~~~~~P~~~l~~~~~l~~i~~~l~EAA~~lGa~~~~~f~~I~lPll~p~i~~~~ 190 (525)
T PRK09433 129 LQGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLPPVA 190 (525)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHcCCHhHHHHHHHCCCcHhHHHHHhhHHhhHHHHHHHH
Confidence 46899999999988888888888876 5666899999999999987754 555554443
No 31
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=88.73 E-value=30 Score=35.19 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=50.3
Q ss_pred hhhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHH----HHHHHHHHHh
Q 024490 131 IIPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATK----QQVKRSLVIA 189 (267)
Q Consensus 131 ~IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~----~~~r~Ai~~a 189 (267)
+-...|.++.+.+.-.=.+..-..+.+++ +.+..|++..+||++||..+ |..|.++-++
T Consensus 137 iyg~~Giil~~~~~~~P~~~l~~~~al~~i~~~~~EaAr~LGa~~~~~F~~V~lPllrPai~~~ 200 (540)
T COG1178 137 IYGLGGILLALVFFNYPLAYLLVLAALETIPPSLEEAARTLGASRWQVFRKVTLPLLRPAIAAG 200 (540)
T ss_pred cccHHHHHHHHHHHhccHHHHHHHHHHHhCChhHHHHHHHcCCChhhHHHHhhHHhhhHHHHHH
Confidence 77889999999999999999999999966 66779999999999999877 6667766654
No 32
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=88.61 E-value=2.7 Score=42.30 Aligned_cols=90 Identities=21% Similarity=0.361 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHh--hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHH
Q 024490 103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMV--GNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ 180 (267)
Q Consensus 103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMll--GNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~ 180 (267)
+.+++....+.++..+.+.|. ++ .+.-++|+++ |=+.+.+.+-.||+++++++ |.++++|.
T Consensus 361 a~iaL~~~v~~~l~~~~l~g~-~l---~l~siaGlil~iG~~VD~~IVI~ErIreel~~-----------g~~~~~Ai-- 423 (498)
T PRK05812 361 ANIALVANLVLILAVLSLLGA-TL---TLPGIAGIVLTIGMAVDANVLIFERIREELRE-----------GRSLRSAI-- 423 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHCC-Cc---hHHHHHHHHHhheeEEeceEEEeHHHHHHHHc-----------CCCHHHHH--
Confidence 445566666666655555552 22 3455677554 78888888899999998864 34555554
Q ss_pred HHHHHHHHhhcccccccchhheeechHHHHH
Q 024490 181 QVKRSLVIALSPVLDNAKTVGLISLPGAMTG 211 (267)
Q Consensus 181 ~~r~Ai~~al~P~i~~m~~vGlVslPGmMtG 211 (267)
+++.+.+..|.+++..|.-+..+|=.+.|
T Consensus 424 --~~~~~~~~~~Il~s~lTTlia~l~L~~~g 452 (498)
T PRK05812 424 --EAGFKRAFSTILDSNITTLIAAIILYALG 452 (498)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667777899999999999999977654
No 33
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=87.84 E-value=23 Score=32.87 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=73.6
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHH----HHHHHHHHHhhcc----cccc------c
Q 024490 133 PVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATK----QQVKRSLVIALSP----VLDN------A 197 (267)
Q Consensus 133 Pi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~----~~~r~Ai~~al~P----~i~~------m 197 (267)
...+.++|+..-+.--...-....+++ +++..|++..||||++|+.+ |.++.++-++.+= ++|. +
T Consensus 134 ~~~~ivlaH~~~~lP~v~~~v~a~l~~~d~~LeeAA~dLGAs~~~~f~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~ 213 (267)
T COG1177 134 GFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTFRRVTLPLILPGILSGALLAFTLSFDEFVITFFL 213 (267)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHhCChHHHHHHHHcCCCHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhHHHhhhee
Confidence 356889999999888888888888866 56789999999999999876 4555555554332 1221 2
Q ss_pred chhheeechHHHHHHHHcCCCHHHHHHHHHHHH
Q 024490 198 KTVGLISLPGAMTGMIMGGASPLEAIQLQIVVM 230 (267)
Q Consensus 198 ~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im 230 (267)
..-|--|+|=-|.+++=.|.+|..++--=+++.
T Consensus 214 ~gp~~~TLP~~i~s~~r~~~~p~i~Alstll~~ 246 (267)
T COG1177 214 AGPGFTTLPLQIYSMIRRGITPEINALSTLLLL 246 (267)
T ss_pred cCCCCCchHHHHHHHhhcCCChHHHHHHHHHHH
Confidence 233688999999999999999999886555444
No 34
>PRK15133 microcin C ABC transporter permease YejB; Provisional
Probab=87.41 E-value=14 Score=35.65 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=27.4
Q ss_pred hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccc
Q 024490 160 QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNA 197 (267)
Q Consensus 160 ~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m 197 (267)
++|-++++.+.|.++++-. .|-++|.++.|.+..+
T Consensus 256 ~~dYV~~ArakGls~~~I~---~rH~LrNal~Piit~~ 290 (364)
T PRK15133 256 RKQYVVTARAKGVSEKNIL---WKHVFRNAMLLVIAGF 290 (364)
T ss_pred cchHHHHHHHcCCCcceeh---HHhhHHhhHHHHHHHH
Confidence 4567999999999998654 3557777888988765
No 35
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=87.14 E-value=4.4 Score=41.82 Aligned_cols=89 Identities=19% Similarity=0.304 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHh-ccCCCCccchhhhhhHHh--hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHH
Q 024490 104 GASILAGTAVTMLMLVVL-NVFPFTPRYIIPVAGMMV--GNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ 180 (267)
Q Consensus 104 ~~si~~~~~~~l~~~~~~-~~~~~~~ry~IPi~GMll--GNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~ 180 (267)
.+++....++++.++.+. |.. -.+.-++|+++ |-+..++.+-.||.++++++ |-++++|
T Consensus 469 ~iAL~~~l~l~l~vmsll~G~t----LtLpgIAGiILtIGmaVDanIVI~ERIrEel~~-----------G~s~~~A--- 530 (604)
T PRK12933 469 NVALIANMVCLFGLLALIPGAV----LTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE-----------GRSFAQA--- 530 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc----ccHHHHHHHHHHHHhhccCcEEEehHHHHHHHc-----------CCCHHHH---
Confidence 344444444444444443 321 24557888887 88889999999999999864 4466666
Q ss_pred HHHHHHHHhhcccccccchhheeechHHHHH
Q 024490 181 QVKRSLVIALSPVLDNAKTVGLISLPGAMTG 211 (267)
Q Consensus 181 ~~r~Ai~~al~P~i~~m~~vGlVslPGmMtG 211 (267)
++++.+.+..|.+|+.-|.-++.+|=.+.|
T Consensus 531 -i~~G~~~a~~~IldanlTTlia~lpL~~~G 560 (604)
T PRK12933 531 -IDTGFDSAFSTIFDANFTTMITAVVLYSIG 560 (604)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456667788899999999999999977654
No 36
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional
Probab=87.06 E-value=24 Score=32.21 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=38.0
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHH----HHHHHHHHhh
Q 024490 134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQ----QVKRSLVIAL 190 (267)
Q Consensus 134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~----~~r~Ai~~al 190 (267)
..|++++.......-...-+.+.+++ +++.+|++..+|||++|.... ..|.++-++.
T Consensus 146 ~~~vil~~~~~~~p~~~~~~~~~l~~i~~~l~EAA~~lGas~~~~~~~I~lP~l~p~i~~~~ 207 (283)
T PRK11602 146 WPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGV 207 (283)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCccHHHHHHhCCCChhhhhhheeHHhhhHHHHHHH
Confidence 35677777666665555555555533 556799999999999998765 4555544443
No 37
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=87.05 E-value=0.9 Score=42.77 Aligned_cols=36 Identities=44% Similarity=0.603 Sum_probs=29.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHc
Q 024490 162 NLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMG 215 (267)
Q Consensus 162 ~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILg 215 (267)
+.=|+.++||+|.||....++-.+ ..||+.||-||+
T Consensus 173 ~~ReAs~aLGasKwqtI~~vvlP~------------------A~pGIiTGviLa 208 (292)
T COG0581 173 SLREAAYALGATKWQTIFKVVLPA------------------ALPGIITGVILA 208 (292)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHh------------------hHhHHHHHHHHH
Confidence 345899999999999988876653 468899998875
No 38
>PRK15081 glutathione ABC transporter permease GsiC; Provisional
Probab=87.01 E-value=19 Score=33.81 Aligned_cols=61 Identities=25% Similarity=0.280 Sum_probs=37.6
Q ss_pred cchhhhhhHHhhhhHHHHHHHHHHHHHHHH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccc
Q 024490 129 RYIIPVAGMMVGNAMTVTGVTMKRLRDDIK--IQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDN 196 (267)
Q Consensus 129 ry~IPi~GMllGNsm~a~slal~r~~~~l~--~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~ 196 (267)
+++.|+.-+.++... .-.+-.++++. .++|-++++.+.|.++++-.. |..++.++.|.+..
T Consensus 172 ~~~LP~l~l~l~~~~----~~~r~~R~~~~~~~~~dYV~~ArakGls~~~I~~---rhilrnal~piit~ 234 (306)
T PRK15081 172 HYILPSLTLGAAVAA----VMARFTRASFVEVLSEDYMRTARAKGVSETWVVL---KHGLRNAMIPVVTM 234 (306)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccHHHHHHHHcCcCcchhhH---HHhHHhhHHHHHHH
Confidence 345666666665542 22233333443 355669999999999987653 44566677777664
No 39
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=86.42 E-value=25 Score=31.98 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=40.0
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHH
Q 024490 135 AGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKR 184 (267)
Q Consensus 135 ~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~ 184 (267)
.|++++...........-+++.+++ +++.+|++...||++||....+.-.
T Consensus 151 ~~vil~~~~~~~p~~~~~~~~~l~~i~~~l~EAA~~~Gas~~~~f~~I~lP 201 (285)
T PRK09497 151 SAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIP 201 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHhhHH
Confidence 4788888888878888888888877 6667899999999999987754433
No 40
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=86.29 E-value=5.4 Score=37.58 Aligned_cols=124 Identities=14% Similarity=0.156 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhh--HHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHH
Q 024490 103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAG--MMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ 180 (267)
Q Consensus 103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~G--MllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~ 180 (267)
+.+++......++..+.+.+ .|++.- -++| +++|=+.|...+-.||.+++.+++ -|.+.+|+
T Consensus 155 al~al~~dv~~~l~~l~l~g-~~l~~~---~iaglLtliG~svnd~IVi~drire~~~~~---------~~~~~~e~--- 218 (297)
T PRK13021 155 ALFALVHDVIFVLAFFALTQ-MEFNLT---VLAAVLAILGYSLNDSIIIADRIRELLIAK---------PKLAIQEI--- 218 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCccHH---HHHHHHHHHHHeeeCCEEEeeHHHHHHHhc---------cCCCHHHH---
Confidence 34566555555555555544 344422 2233 245666777777788888776532 13444444
Q ss_pred HHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024490 181 QVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWP 250 (267)
Q Consensus 181 ~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~r 250 (267)
+++|+++.+-|++.+.-|.-+..+|=+.. |.+.+.-.. +.++..+..++..|.+++.-+...
T Consensus 219 -i~~ai~~~lrr~l~TslTt~l~llpL~l~-----G~~~~~~fA--~~li~Gli~gt~sslfva~pl~~~ 280 (297)
T PRK13021 219 -NNQAIVATFSRTMVTSGTTLMTVGALWIM-----GGGPLEGFS--IAMFIGILTGTFSSISVGTSLPEL 280 (297)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888777777777776553 666665443 677888888888888887766543
No 41
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=86.23 E-value=3.2 Score=37.68 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHh--hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHH
Q 024490 102 VAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMV--GNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATK 179 (267)
Q Consensus 102 ~~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMll--GNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~ 179 (267)
.+.+++..+.+.++..+.+.| .|++ ..-++|+++ |-+.+...+-.||++++++++ -|.+++||.
T Consensus 126 ~v~~~ip~~l~~~~~~l~~~g-~~ln---~~sl~gli~~iGi~Vdd~Ivv~d~i~e~~~~~---------~~~~~~~a~- 191 (246)
T TIGR00966 126 GAIVALVHDVIITVGVYSLFG-IEVN---LTTVAALLTIIGYSINDTVVVFDRIRENLRKY---------TRKTFTEVI- 191 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-Cccc---HHHHHHHHHHHHHhccCeEEEehHHHHHHhhc---------cCCCHHHHH-
Confidence 344555555555555554444 2333 344455544 666666667778888776532 134666555
Q ss_pred HHHHHHHHHhhcccccccchhheeechHHHH
Q 024490 180 QQVKRSLVIALSPVLDNAKTVGLISLPGAMT 210 (267)
Q Consensus 180 ~~~r~Ai~~al~P~i~~m~~vGlVslPGmMt 210 (267)
++|.+..+.|.+.+.-++-++.+|=+..
T Consensus 192 ---~~a~~~~~~~ii~ttltti~~flpl~~~ 219 (246)
T TIGR00966 192 ---NLSINQTLSRTINTSLTTLLAVLALYVF 219 (246)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677778889999999999999997764
No 42
>PRK11123 arginine transporter permease subunit ArtQ; Provisional
Probab=85.60 E-value=16 Score=32.86 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=45.7
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccc
Q 024490 136 GMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPVLD 195 (267)
Q Consensus 136 GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~ 195 (267)
..+++-+........+.+.+++++ +++.+|++.++|+|++|..+.++-......+.|.+-
T Consensus 106 ~~iial~~~~~~~~~~~~~~~l~~v~~~~~eaa~slG~s~~q~~~~IilP~~~~~~l~~l~ 166 (238)
T PRK11123 106 CGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLG 166 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHcCCCHHHHHHHHHHHHhHHHHHHHHH
Confidence 345666666666666778877765 677799999999999999988888777766677553
No 43
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=85.40 E-value=28 Score=31.51 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=41.3
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHH----HHHHHHHHh
Q 024490 134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQ----QVKRSLVIA 189 (267)
Q Consensus 134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~----~~r~Ai~~a 189 (267)
..++++++......-...-..+.+++ +++.+|++..+||+++|..+. ..|.++-++
T Consensus 143 ~~~ii~~~~~~~~p~~~~~~~~~l~~i~~~l~EAA~~lGas~~~~f~~I~lP~l~p~i~~~ 203 (272)
T TIGR03255 143 LAIVLFAHFALILAFCFRCAAAALAPELADIEEAAASLGAPPAMRLRHVLLPLLMPAIMAA 203 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHhHHhhHHhhHHHHHHH
Confidence 45777888877777777777788766 556689999999999998874 445544433
No 44
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present.
Probab=84.70 E-value=29 Score=31.12 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=43.9
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc
Q 024490 135 AGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSP 192 (267)
Q Consensus 135 ~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P 192 (267)
.+.+++.+........+-+.+.+++ +++.+|++..+|+|++|..+.+.-+.++..+..
T Consensus 133 ~~~ii~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~lGas~~~~~~~i~lP~~~p~i~~ 191 (265)
T TIGR02139 133 LGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLT 191 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCChhhhhhheehhhchHHHHH
Confidence 4577778888777777777777655 677799999999999999887766655544444
No 45
>TIGR01253 thiP thiamine ABC transporter, permease protein. The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).
Probab=84.61 E-value=45 Score=33.20 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=44.6
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHH----HHHHHHHh
Q 024490 133 PVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQ----VKRSLVIA 189 (267)
Q Consensus 133 Pi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~----~r~Ai~~a 189 (267)
...|+++++.......+.--+.+.+++ +++.+|++..+|||++|..+.+ .|.++-++
T Consensus 131 ~~~~vil~~~~~~~P~~~~~~~~~l~~i~~~l~EAA~~dGas~~~~f~~I~lPl~~p~i~~~ 192 (519)
T TIGR01253 131 GLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPT 192 (519)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHhCCHHHHHHHHHCCCCHHHHHHHhHHHHhHHHHHHH
Confidence 467899999988888888888888866 5677999999999999987644 45544433
No 46
>PF00528 BPD_transp_1: Binding-protein-dependent transport system inner membrane component; InterPro: IPR000515 Bacterial binding protein-dependent transport systems [, ] are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown [, ] that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems [] to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, however they can be classified into seven families which have been respectively termed: araH, cysTW, fecCD, hisMQ, livHM, malFG and oppBC.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2ONK_H 3PUX_G 3PUY_G 2R6G_G 3PV0_G 3RLF_G 3PUW_G 3PUV_G 3PUZ_G 3TUI_E ....
Probab=84.53 E-value=20 Score=29.15 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=36.3
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 024490 136 GMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVI 188 (267)
Q Consensus 136 GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~ 188 (267)
++++............-..+.+++ +++.+|++..+|+++||..+...-..++.
T Consensus 55 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~eaa~~~G~s~~~~~~~v~lP~~~p 108 (185)
T PF00528_consen 55 PIILAYVIFWFPFAIIIIYNALRSIPKEYIEAARILGASRWQIFRKVILPNIKP 108 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCS-THHHHHHHHTTS-HHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCccceeeHHHHHH
Confidence 366666777777777777777754 45568999999999999887554444333
No 47
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=84.11 E-value=12 Score=39.50 Aligned_cols=114 Identities=18% Similarity=0.306 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHh--hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHH
Q 024490 105 ASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMV--GNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQV 182 (267)
Q Consensus 105 ~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMll--GNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~ 182 (267)
+++....+.++..+.+.|. +++ +.-++|+++ |=+.+.+.+-.||+++++++ |.+++|| +
T Consensus 296 ial~~~v~~~l~~l~l~g~-~l~---l~siaglil~iGi~Vd~~Ivi~eri~e~l~~-----------g~~~~~A----i 356 (755)
T PRK13024 296 IALLLYIFLTLGALSSLGA-VLT---LPGIAGLVLGIGMAVDANVLIFERIKEELRK-----------GKSLKKA----F 356 (755)
T ss_pred HHHHHHHHHHHHHHHHHCC-Ccc---HHHHHHHHHHHHHHHhCcEEehHHHHHHHHc-----------CCCHHHH----H
Confidence 3444444444444444442 222 333556554 55555666778999888754 3455555 4
Q ss_pred HHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024490 183 KRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMS 244 (267)
Q Consensus 183 r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~ 244 (267)
+++.+.++.|.+++.-|.-+..+|-...| ..|+.-.. +.+.+.++++...+.+++
T Consensus 357 ~~a~~~~~~~il~t~lTTii~~lpL~~~g-----~g~~~~fa--itl~~Gli~s~~~sl~v~ 411 (755)
T PRK13024 357 KKGFKNAFSTILDSNITTLIAAAILFFFG-----TGPVKGFA--TTLIIGILASLFTAVFLT 411 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchhhhHH--HHHHHHHHHHHHHHHHHH
Confidence 67777788899999999999999965433 34433222 244445555544444443
No 48
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=83.89 E-value=5 Score=37.78 Aligned_cols=43 Identities=16% Similarity=0.102 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc
Q 024490 150 MKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSP 192 (267)
Q Consensus 150 l~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P 192 (267)
.+..+-.+.+|++|++-+..+|||++.-.+|++.+++-.+++=
T Consensus 198 ~Ntirl~i~~Rr~EI~im~lvGAt~~~I~~pfl~eg~~~gl~G 240 (309)
T TIGR00439 198 GNSIRLQILSRRESIEVTKLLGATDSFILRPFLYQGMWQSIFG 240 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3556778899999999999999999999999999998766653
No 49
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=83.77 E-value=41 Score=31.99 Aligned_cols=44 Identities=23% Similarity=0.186 Sum_probs=29.8
Q ss_pred HHHHHHHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccc
Q 024490 151 KRLRDDIKI--QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNA 197 (267)
Q Consensus 151 ~r~~~~l~~--~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m 197 (267)
+..+++..+ +++-++++.+.|.|+++-.. |..++.++.|.+..+
T Consensus 222 r~~R~~~~~~~~~~yV~~Ara~Gls~~~i~~---rhil~nal~piit~~ 267 (339)
T PRK10914 222 RMTRSSMLEVLGEDYIRTARAKGLTRMRVII---VHALRNAMLPVVTVI 267 (339)
T ss_pred HHHHHHHHHHhCchHHHHHHHcCcCcceehH---HHHHHHhHHHHHHHH
Confidence 334444444 56779999999999987653 445566777776544
No 50
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=83.09 E-value=34 Score=30.56 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=41.7
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Q 024490 134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIA 189 (267)
Q Consensus 134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~a 189 (267)
..+.++++...........+++.+++ +++.+|++..+|+|+||..+.+.-..++.+
T Consensus 127 ~~~iil~~~~~~~p~~~~~~~~~~~~i~~~~~eaA~~lGas~~~~~~~I~lP~l~p~ 183 (256)
T PRK09500 127 FWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPA 183 (256)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHhCChHHHHHHHHcCCChhhHHhHhHHHHhHHH
Confidence 36777777777777777777777765 556689999999999998876655444433
No 51
>PRK11275 pstC phosphate transporter permease subunit PstC; Provisional
Probab=82.97 E-value=20 Score=33.87 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHH
Q 024490 143 MTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQV 182 (267)
Q Consensus 143 m~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~ 182 (267)
........+.+.+.+++ +++..|++.++|+|+||....++
T Consensus 179 l~~~p~~~~~~~~al~~V~~~~~EAA~aLGas~~q~~~~Vi 219 (319)
T PRK11275 179 IMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIV 219 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44455556777777755 56678999999999999987554
No 52
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transporter, permease protein.
Probab=82.97 E-value=39 Score=33.69 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=41.6
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHH----HHHHHHHHHHhh
Q 024490 135 AGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQAT----KQQVKRSLVIAL 190 (267)
Q Consensus 135 ~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~----~~~~r~Ai~~al 190 (267)
.|+++.+.....-....-+.+.+++ +++.+|++..+|||++|.. -|..+.++-++.
T Consensus 134 ~~vil~~~~~~~P~~~~~~~~~l~~i~~~l~eAA~~~Gas~~~~~~~I~lP~~~p~i~~~~ 194 (546)
T TIGR03262 134 WGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAA 194 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHcCCCcceeEEEEehhccHHHHHHHH
Confidence 4778888888777777777777755 5667899999999999986 455555555443
No 53
>PRK10999 malF maltose transporter membrane protein; Provisional
Probab=82.48 E-value=21 Score=36.32 Aligned_cols=57 Identities=18% Similarity=0.036 Sum_probs=43.6
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHH----HHHHHHHHHhh
Q 024490 134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATK----QQVKRSLVIAL 190 (267)
Q Consensus 134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~----~~~r~Ai~~al 190 (267)
..++++.|......-..--+.+.+++ .++.+|++...||++||... |.+|.++..++
T Consensus 375 ~~~Viiv~vw~~~Pf~~lil~aaL~sIp~eL~EAA~iDGAs~~q~F~~ItLPLL~P~l~~~~ 436 (520)
T PRK10999 375 KTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLM 436 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHhhhheeeHHhhHHHHHHHH
Confidence 44677888888778888888888877 67779999999999999875 55555554443
No 54
>TIGR01185 devC DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.
Probab=82.35 E-value=15 Score=35.34 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHH
Q 024490 148 VTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIM 214 (267)
Q Consensus 148 lal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqIL 214 (267)
.-.+.++....+|+.||-.+.|+|+++++-.+-++.||+--++ +-.++|.-.|..+
T Consensus 275 ~~~~~~~~~v~er~~EigiLrAlGa~~~~I~~~~l~Ea~ll~~-----------iG~~~G~~lg~~~ 330 (380)
T TIGR01185 275 IVYQILYTEVADHLSEYATLKAIGYTQKYLLGVILQEALLLAC-----------LGYLPGWGFAILL 330 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 3455778889999999999999999999999999999887655 2256777766554
No 55
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC. This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=82.10 E-value=39 Score=30.55 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=28.2
Q ss_pred HHHHHHHHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhh
Q 024490 150 MKRLRDDIKI--QLNLVETALALGATPRQATKQQVKRSLVIAL 190 (267)
Q Consensus 150 l~r~~~~l~~--~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al 190 (267)
.+-.+++.++ +++-+|++.++|+|+++..+..+-..+...+
T Consensus 140 ~r~~r~~~~~~~~~~~veaA~~~G~s~~~ii~~~ilP~~~p~i 182 (258)
T TIGR02790 140 ARMVRGMVVSLKQREFVLAARTSGASHWQIIRRHILPNILSPI 182 (258)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHcCCChhhhHHHHhHHhhHHHH
Confidence 4445555544 4677999999999999987766555444333
No 56
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=80.75 E-value=5.8 Score=37.34 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=36.0
Q ss_pred HHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhc
Q 024490 151 KRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALS 191 (267)
Q Consensus 151 ~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~ 191 (267)
+...-.+.+|++|++-+-.+|||++.-.+|++.+++--++.
T Consensus 199 ntir~~v~~r~~ei~im~~~GAt~~~I~~~fl~eg~~~g~~ 239 (309)
T PRK11026 199 NSVRLSIFSRRDTINVMKLIGATDGFILRPFLYGGALLGFS 239 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 45567788999999999999999999999999999876654
No 57
>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]
Probab=80.65 E-value=46 Score=30.99 Aligned_cols=163 Identities=12% Similarity=0.153 Sum_probs=77.8
Q ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHH-----HHHHHHHHHHHHHHHHhccCChHHHHHHHH
Q 024490 5 DVEWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLGIEGEMIYSIV-----RAFLQLSVIGFVLQFIFSQDNRGWIILAYL 79 (267)
Q Consensus 5 ~~~~~~~~~~g~~~~~~a~~lv~~~~~is~~~~lgl~r~l~ia~~-----R~~vQL~~vG~vL~~if~~~~~~~~~l~~l 79 (267)
++.|-...+ -...+.+..+++++|+....++-+...-+...+.+ +..++|.++=..+ ...+|..+
T Consensus 15 ~~~~~r~~L-i~~al~~~~l~L~~Pl~~vf~eAf~kG~~~~~~~~~~PdalsAi~LTllva~I-------~VPlN~vF-- 84 (287)
T COG4208 15 PIRWVRWLL-IAVALGFLALLLLVPLIAIFYEAFSKGLGVFLAALSDPDALSAIKLTLLVALI-------AVPLNVVF-- 84 (287)
T ss_pred cchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcChhHHHHHHHHHHHHHH-------hccHHHHH--
Confidence 444555555 33345666677888887777776655555544432 3444444332111 11222221
Q ss_pred HHHHHHHHHHhhhcCCCCcchHHHHH--HHHHHHHHHHH-HHHHhcc--------CCCCccchhhhhhHHhhhhHHHHHH
Q 024490 80 FMVIVAGYTAGQRAKHVPRGKYVAGA--SILAGTAVTML-MLVVLNV--------FPFTPRYIIPVAGMMVGNAMTVTGV 148 (267)
Q Consensus 80 ~M~~~As~~a~~R~~~~~~~~~~~~~--si~~~~~~~l~-~~~~~~~--------~~~~~ry~IPi~GMllGNsm~a~sl 148 (267)
-..++|. ..|-+-+.|..+..++ ...++-.+... ++++.|. ...+-|-+-.+=||+++..-..+--
T Consensus 85 --Gv~aAW~-iakf~F~Gk~lL~tlIDlPFsVSPVvaGl~~vLl~g~~g~lG~wl~~~~iqIiFa~PGiVLaT~FVT~PF 161 (287)
T COG4208 85 --GVAAAWA-IARFEFPGKALLLTLIDLPFSVSPVVAGLVYVLLFGSNGWLGGWLEAHDIQIIFAVPGIVLATIFVTCPF 161 (287)
T ss_pred --HHHHHHH-HHHccCCchhhhhhhhcCCCcccHHHHHHHHHHHHcccccchHHHHhCCceEEEecccceeeehhcccch
Confidence 1223443 3343333333333332 22223222221 1111121 1134555555556666655444333
Q ss_pred HHHHHHHHH-HHhHHHHHHHHHCCCCHHHHHHH
Q 024490 149 TMKRLRDDI-KIQLNLVETALALGATPRQATKQ 180 (267)
Q Consensus 149 al~r~~~~l-~~~~~~ie~~LalGAt~~eA~~~ 180 (267)
-.+-+---+ ++..||=|+++.||||.||....
T Consensus 162 VaREliPlmq~qG~~eEeAA~~LGAsgWQtFwr 194 (287)
T COG4208 162 VARELIPLMQEQGTDEEEAALTLGASGWQTFWR 194 (287)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHhccccceeeee
Confidence 333333222 44567789999999999987544
No 58
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=79.92 E-value=29 Score=37.45 Aligned_cols=88 Identities=20% Similarity=0.330 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHh--hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHH
Q 024490 105 ASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMV--GNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQV 182 (267)
Q Consensus 105 ~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMll--GNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~ 182 (267)
+++....+.++..+.+.|.. =.+.-++|+++ |-+..++.+-.||.++|+++ |.++++| +
T Consensus 402 ial~~~vl~~l~~l~l~g~t----Lnl~~IaGiil~IGm~VD~~IVI~ErIreel~~-----------G~s~~~A----i 462 (855)
T PRK14726 402 IALIVNVVLIIAVLSLLGAT----LTLPGIAGIVLTIGMAVDSNVLIYERIREEEKT-----------GHSLIQA----L 462 (855)
T ss_pred HHHHHHHHHHHHHHHHhCcc----eeHHHHHHHHHHHHhhhCceEEeHHHHHHHHHc-----------CCCHHHH----H
Confidence 34444444444444443421 23446888887 66666888999999988764 5577666 4
Q ss_pred HHHHHHhhcccccccchhheeechHHHHH
Q 024490 183 KRSLVIALSPVLDNAKTVGLISLPGAMTG 211 (267)
Q Consensus 183 r~Ai~~al~P~i~~m~~vGlVslPGmMtG 211 (267)
+++.+.+..|.+|+.-|.-++.+|=.+.|
T Consensus 463 ~~g~~~a~~~Il~s~lTTlia~lpL~~~g 491 (855)
T PRK14726 463 DRGFSRALATIVDANVTILIAAVILFFLG 491 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777788999999999999999976554
No 59
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=79.88 E-value=23 Score=31.04 Aligned_cols=91 Identities=18% Similarity=0.286 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHH
Q 024490 106 SILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRS 185 (267)
Q Consensus 106 si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~A 185 (267)
++....++++.++.+.+ .+++.-.+.-+ =+++|-+.+.+.+-.||.++++++++ |. ..++.++++
T Consensus 63 ~l~~dv~i~l~~~~~~~-~~l~l~~iaal-l~~iG~sVd~~IVifdRIre~~~~~~---------~~----~~~~~~~~s 127 (189)
T PF02355_consen 63 ALIHDVLITLGIFSLFG-IELTLPSIAAL-LTIIGYSVDDNIVIFDRIREELRASR---------GK----SLREAINIS 127 (189)
T ss_dssp HHHHHHHHHHHHHHHHT--EE-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCC-S---------TS-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC-CcccHHHHHHH-HHHHHHHHhcceeehHHHHHHhhhCC---------CC----CHHHHHHHH
Confidence 44444444444444444 22333222221 25688999999999999999976522 23 334555677
Q ss_pred HHHhhcccccccchhheeechHHHHH
Q 024490 186 LVIALSPVLDNAKTVGLISLPGAMTG 211 (267)
Q Consensus 186 i~~al~P~i~~m~~vGlVslPGmMtG 211 (267)
++.++.+++++.-++-++.+|=...|
T Consensus 128 ~~~tl~r~i~t~~ttll~~~~L~~~g 153 (189)
T PF02355_consen 128 IKQTLSRTIDTSLTTLLAALILFFFG 153 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77788888887777666666544433
No 60
>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]
Probab=79.78 E-value=7.2 Score=35.37 Aligned_cols=96 Identities=19% Similarity=0.176 Sum_probs=62.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHH-HHHHHHHHHhhcc-------cccccchhheeechHHH
Q 024490 139 VGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATK-QQVKRSLVIALSP-------VLDNAKTVGLISLPGAM 209 (267)
Q Consensus 139 lGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~-~~~r~Ai~~al~P-------~i~~m~~vGlVslPGmM 209 (267)
+.=+.|..+-.-|-|+..++. .++|.|++-|+|.|+++..+ -.+=+|+|.|+=| .+.+++-+..+|++-+|
T Consensus 101 lAltLNtaAY~~Ei~rGAi~avP~Gq~Eaa~AlGmsr~~~~r~IiLP~Alr~ALp~YsNEvILmlK~Tala~tiTv~Dl~ 180 (228)
T COG4160 101 LALTLNTAAYTTEIFRGAIRAVPRGQWEAARALGMSRFKTLRRIILPSALRRALPAYSNEVILMLKSTALASTITVMDLM 180 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHcCccHHHHHHHHHhHHHHHHhccccCCeEEEEEeccchhhhhhHHHHH
Confidence 344555555555666666654 68999999999999999999 4455788877644 34556667777777665
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Q 024490 210 TGMIMGGASPLEAIQLQIVVMNMLIGASTV 239 (267)
Q Consensus 210 tGqILgG~sPl~A~~yQi~Im~~i~aa~~l 239 (267)
|=+.-+.+-.|+-.-.+.+.+.--+
T Consensus 181 -----g~ar~i~~~Ty~~~~~f~~ag~iYl 205 (228)
T COG4160 181 -----GYARLINSRTYDPYEVFGIAGAIYL 205 (228)
T ss_pred -----HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3334456666665444544444333
No 61
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA. This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise.
Probab=79.68 E-value=46 Score=29.90 Aligned_cols=52 Identities=23% Similarity=0.249 Sum_probs=34.5
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 024490 136 GMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLV 187 (267)
Q Consensus 136 GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~ 187 (267)
+.+++.+.....-...-+.+.+++ +++.+|++..+|+|+||..+.+.=..++
T Consensus 130 ~~~~~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~i~lP~~~ 182 (271)
T TIGR00974 130 AGALALALLILPVIIRTTEEALKAVPKDLREASYALGATKWQTIFKVVLPAAL 182 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHHHHHhhH
Confidence 334445554555556666666655 5666899999999999998755444333
No 62
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=79.20 E-value=13 Score=36.33 Aligned_cols=90 Identities=19% Similarity=0.366 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHH--hhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHH
Q 024490 103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMM--VGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ 180 (267)
Q Consensus 103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMl--lGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~ 180 (267)
+.+++....++++.++.+.|. ++ .+.-++|++ +|-+.+.+.+-.||+++++++ |.+++||.
T Consensus 276 a~ial~~~v~~~l~~~~l~g~-~l---~l~siaglil~iG~~VD~~Ivi~erire~l~~-----------g~~~~~Ai-- 338 (397)
T TIGR01129 276 AAIALVINIVLILAILSAFGA-TL---TLPGIAGLILTIGMAVDANVLIYERIKEELRL-----------GKSVRQAI-- 338 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHCC-Cc---cHHHHHHHHHHhheeeeceEEEeHHHHHHHHc-----------CCCHHHHH--
Confidence 445555555555555555542 22 345566744 488888888889999988753 45666665
Q ss_pred HHHHHHHHhhcccccccchhheeechHHHHH
Q 024490 181 QVKRSLVIALSPVLDNAKTVGLISLPGAMTG 211 (267)
Q Consensus 181 ~~r~Ai~~al~P~i~~m~~vGlVslPGmMtG 211 (267)
+++.+.+..|.+++.-++-+..+|=++.|
T Consensus 339 --~~~~~~~~~~I~~s~lTtlia~l~L~~~g 367 (397)
T TIGR01129 339 --EAGFERAFSTIFDANITTLIAALILYVFG 367 (397)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677789999888888888876654
No 63
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=78.97 E-value=30 Score=32.40 Aligned_cols=142 Identities=16% Similarity=0.214 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhhcCC---------chhHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhc
Q 024490 23 TAVVLLAVLLSFLQKLGI---------EGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRA 93 (267)
Q Consensus 23 ~~lv~~~~~is~~~~lgl---------~r~l~ia~~R~~vQL~~vG~vL~~if~~~~~~~~~l~~l~M~~~As~~a~~R~ 93 (267)
.+++++|+.....+..+. ..+-.+++.|...+...+.-++..+|... -+|. ..|-
T Consensus 24 ~l~~llPl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~S~~~a~~atl~~~vfg~~---------------~a~v-L~R~ 87 (274)
T COG0555 24 LLILLLPLSALVTKSSSLGWAGFWSALTSPRVLAALKLTLLTAFAATLLNLVFGLP---------------LAWV-LVRY 87 (274)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH-hhcc
Confidence 344556655444444433 23346678888888888887777777421 1221 2332
Q ss_pred CCCCcchHH-HH--HHHHHHHHHHHHH-HHHhccC--------CCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhH
Q 024490 94 KHVPRGKYV-AG--ASILAGTAVTMLM-LVVLNVF--------PFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQL 161 (267)
Q Consensus 94 ~~~~~~~~~-~~--~si~~~~~~~l~~-~~~~~~~--------~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~ 161 (267)
+ .|.+... .. +.+..-..+.... +.+.+.. |+.-+..=-..|.+++-.-.+.-...+.....+++-.
T Consensus 88 ~-fpgk~lvdaivDlP~alP~~VaGiaLl~l~~~~g~~g~~~~~~gi~~~~t~~GVivA~~Fvs~Pf~vr~v~~~~~~id 166 (274)
T COG0555 88 D-FPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGLLGSLLAPLGIKFAFTPLGVIVAMFFVSLPFVVRTVQPVLEEID 166 (274)
T ss_pred c-CCcHHHHHHHhcCcccCchHHHHHHHHHHhcCCCcchhhhcccCceEeccHHHHHHHHHHHcchhHHHHHHHHHHhcc
Confidence 3 3333332 11 1232333322221 1222222 2333444456788888888888888899999988755
Q ss_pred HHH-HHHHHCCCCHHHHHHHH
Q 024490 162 NLV-ETALALGATPRQATKQQ 181 (267)
Q Consensus 162 ~~i-e~~LalGAt~~eA~~~~ 181 (267)
.|+ |++-+||||++|....+
T Consensus 167 ~~~EeaA~sLGas~~~tf~~V 187 (274)
T COG0555 167 REYEEAARSLGASPLQTFRRV 187 (274)
T ss_pred HHHHHHHHhcCCCcceeeeee
Confidence 554 67899999999875433
No 64
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. F
Probab=78.44 E-value=37 Score=28.16 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=38.3
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc
Q 024490 135 AGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSP 192 (267)
Q Consensus 135 ~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P 192 (267)
.++++..... ......-..+.+++ +++.+|++...|+++++....+.-+.++..+..
T Consensus 75 ~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~eaa~~~G~~~~~~~~~v~lp~~~~~i~~ 132 (190)
T cd06261 75 PALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILT 132 (190)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHcCCCHhHHhHHhhhhhhhHHHHH
Confidence 3555555555 45555555666665 777899999999999988887755555544433
No 65
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism]
Probab=78.30 E-value=15 Score=33.33 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=44.7
Q ss_pred HHHhccCCCCccchhh---------hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHH
Q 024490 118 LVVLNVFPFTPRYIIP---------VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATK 179 (267)
Q Consensus 118 ~~~~~~~~~~~ry~IP---------i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~ 179 (267)
++..|.+.|=.+++=+ -.|-+++....+-=+..+.....++. +++..|++-.+|||++|...
T Consensus 65 Li~fgr~g~iG~~l~~~~g~~~~Fs~~gavlAs~vvslPlmv~~~~~a~~~id~~le~aA~tlGas~~~vf~ 136 (225)
T COG4149 65 LVLFGRNGFIGQFLEDWFGLSLAFSWQGAVLASVVVSLPLMVRPLRLAFEAIDRELEEAARTLGASRWEVFF 136 (225)
T ss_pred HHHHcCcCchHHHHHHHcCCcEEEeeHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHcCCChhhhhe
Confidence 3455655554444444 45778888888888888888888866 66678899999999998653
No 66
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=77.52 E-value=22 Score=38.35 Aligned_cols=127 Identities=14% Similarity=0.113 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHH
Q 024490 103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQV 182 (267)
Q Consensus 103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~ 182 (267)
+.++++.-.++++.++.+.+ .|++.-.+.- .=+++|=++|-..+-.||++++.++++ |.+.+|.....+
T Consensus 701 avial~hDv~i~~g~~~l~g-~~ls~~~iag-lLtliGysvndtIVi~DRIrE~~~~~~---------~~~~~~~~~~si 769 (855)
T PRK14726 701 AIIATLHDVILTLGLFVLTG-IEFNLTSIAA-ILTIVGYSLNDTVVVYDRVRENLRRYK---------KMPLPILIDASI 769 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCccHHHHHH-HHHHHHHeeeCcEEEehHHHHHHhhcc---------CCCHHHHHHHHH
Confidence 34566666666666665555 3455322221 124567777878888899988876432 455555555555
Q ss_pred HHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024490 183 KRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCWPA 251 (267)
Q Consensus 183 r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~r~ 251 (267)
+++.+. ++++.-|.-+..+|=+.. |.+.+.- .-+.+++.+.+++..|.+++.-+-+..
T Consensus 770 ~~tl~R----ii~TslTTll~llpL~l~-----G~~~i~~--fai~li~Gli~gt~sSifvAspll~~~ 827 (855)
T PRK14726 770 NQTLSR----TVLTSATTLLALLALYLF-----GGEVIRS--FTFAMLFGVAVGTFSSIYIAAPVLIVF 827 (855)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHh-----cchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444 777777777777776643 4444443 347788888888888888877765543
No 67
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=76.33 E-value=2 Score=40.73 Aligned_cols=30 Identities=27% Similarity=0.267 Sum_probs=23.4
Q ss_pred hHHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Q 024490 160 QLNLVETALALGATPRQATKQQVKRSLVIA 189 (267)
Q Consensus 160 ~~~~ie~~LalGAt~~eA~~~~~r~Ai~~a 189 (267)
.+...|+.++||||+||.++..+-.+.+.+
T Consensus 192 P~~lreas~aLGaTkweti~kVilpaa~~G 221 (310)
T COG0573 192 PRSLREAAYALGATKWETIRKVILPAARSG 221 (310)
T ss_pred CHHHHHHHHHcCCCceehhhhhhHHhhHHH
Confidence 345679999999999999997766665543
No 68
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Probab=75.50 E-value=69 Score=29.72 Aligned_cols=48 Identities=23% Similarity=0.238 Sum_probs=38.1
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHH
Q 024490 134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQ 181 (267)
Q Consensus 134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~ 181 (267)
..|++++...........-+.+.+++ +++.+|++..+||++||..+.+
T Consensus 180 ~~~vil~~~~~~~p~~~~~~~~~l~~i~~~~~EAA~~lGas~~~~~~~I 228 (312)
T TIGR03226 180 AGGVILAEITFFTPFVMRPLLAAFAQIDKRLLEAASILGAHGLMLAGQV 228 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHcCCChhhhhhhe
Confidence 46788888887777777777777765 5677999999999999976643
No 69
>PRK11268 pstA phosphate transporter permease subunit PtsA; Provisional
Probab=74.45 E-value=71 Score=29.42 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHCCCCHHHHHHHHHHHH
Q 024490 143 MTVTGVTMKRLRDDIK-IQLNLVETALALGATPRQATKQQVKRS 185 (267)
Q Consensus 143 m~a~slal~r~~~~l~-~~~~~ie~~LalGAt~~eA~~~~~r~A 185 (267)
........+...+.++ -.++..|++.++|+|++|....++-+.
T Consensus 162 i~~~p~~~~~~~~~l~~ip~~l~EAA~~lGas~~~~~~~iilP~ 205 (295)
T PRK11268 162 LLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKA 205 (295)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCChHHhhHHhhHHh
Confidence 3344444444444444 356779999999999999876554443
No 70
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=73.88 E-value=28 Score=39.25 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=49.8
Q ss_pred chhhhhhHHh--hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccccchhheeechH
Q 024490 130 YIIPVAGMMV--GNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPG 207 (267)
Q Consensus 130 y~IPi~GMll--GNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPG 207 (267)
.+.-++|+++ |=+.+++.+-.||.++++++ |.+.++| +.++.+.++.|.+++--|+-+..+|=
T Consensus 960 TLpgIAGIILlIGmAVDdnIVIfERIREELr~-----------Gksl~eA----I~~G~~~afs~ILdTnLTTLIA~lPL 1024 (1403)
T PRK12911 960 TLSGLAGIVLAMGMAVDANVLVFERIREEYLL-----------SRSLSES----VEAGYKKAFSAIFDSNLTTILASALL 1024 (1403)
T ss_pred hHHHHHHHHHHHHHhhcCCEEEehHHHHHHHc-----------CCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567665 77778888889999988864 3455544 45677778889999999999999997
Q ss_pred HHHH
Q 024490 208 AMTG 211 (267)
Q Consensus 208 mMtG 211 (267)
.+.|
T Consensus 1025 f~fG 1028 (1403)
T PRK12911 1025 LMLD 1028 (1403)
T ss_pred HHhc
Confidence 6655
No 71
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=73.29 E-value=70 Score=29.23 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=32.3
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHH----HHHHHHHH
Q 024490 136 GMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQ----QVKRSLVI 188 (267)
Q Consensus 136 GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~----~~r~Ai~~ 188 (267)
+.++.+......-...-+.+.+++ +++.+|++..+|||++|..+. ..|.++-+
T Consensus 142 ~i~l~~~~~~~p~~~~~~~~al~~i~~~l~EAA~~lGas~~q~f~~I~lPl~~p~i~~ 199 (281)
T PRK10592 142 TIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIIS 199 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHcCCChhhhhheeeHHhhhHHHHH
Confidence 344444444444444445555544 567789999999999998654 44444443
No 72
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]
Probab=72.59 E-value=19 Score=32.60 Aligned_cols=92 Identities=32% Similarity=0.460 Sum_probs=60.9
Q ss_pred chhhhhhHHhhhhHHHH------HHHHHHHHHHH------HHhHHHHHHHHHCCCCHHHHHHHHH-HHHHHHhhcccccc
Q 024490 130 YIIPVAGMMVGNAMTVT------GVTMKRLRDDI------KIQLNLVETALALGATPRQATKQQV-KRSLVIALSPVLDN 196 (267)
Q Consensus 130 y~IPi~GMllGNsm~a~------slal~r~~~~l------~~~~~~ie~~LalGAt~~eA~~~~~-r~Ai~~al~P~i~~ 196 (267)
-++|+.=++.|.+.... +.+.-=|+..+ +-+++.+|++.|.|||+||-...+. .|| .|.+=+
T Consensus 79 ~liP~Tr~ivGTsiG~~AAivPL~i~a~PF~ARlve~aL~EVd~GvIEAA~amGAs~~~II~kVlLpEa-----~p~li~ 153 (222)
T COG2011 79 ALIPLTRLIVGTSIGTTAAIVPLTIGAAPFVARLVESALREVDKGVIEAAQAMGASPWQIIRKVLLPEA-----LPGLVS 153 (222)
T ss_pred HHHHHHHHHHhcccccchhHhhhHHHHHHHHHHHHHHHHhhcCccHHHHHHHcCCCHHHHHHHhcccch-----hHHHHH
Confidence 36788888888776433 23333343333 2267789999999999998776433 333 344444
Q ss_pred cchhheeechH--HHHHHHHcCCCHHHHHHHH
Q 024490 197 AKTVGLISLPG--AMTGMIMGGASPLEAIQLQ 226 (267)
Q Consensus 197 m~~vGlVslPG--mMtGqILgG~sPl~A~~yQ 226 (267)
=-|+-+|++=| .|.|.+=||-==--|++|=
T Consensus 154 g~Tvt~I~LIg~SAMAGaIGgGGLGdlAiryG 185 (222)
T COG2011 154 GITVTLISLIGYSAMAGAIGGGGLGDLAIRYG 185 (222)
T ss_pred HHHHHHHHHHhHHHHhcccccCchhHHHHHHh
Confidence 45566677766 5889998888777888763
No 73
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise.
Probab=72.56 E-value=15 Score=33.49 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhc
Q 024490 142 AMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALS 191 (267)
Q Consensus 142 sm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~ 191 (267)
+.........-+.+.+++ +++.+|++.++|||+||..+.++-..++..+.
T Consensus 159 ~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~IiLP~~~p~i~ 209 (295)
T TIGR02138 159 AIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIV 209 (295)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCHhhhhhHhHHHhhHHHHH
Confidence 334445555666666765 56778999999999999987665555544443
No 74
>PRK15082 glutathione ABC transporter permease GsiD; Provisional
Probab=71.44 E-value=88 Score=29.11 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=28.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH--hHHHHHHHHHCCCCHHHHHHHHH
Q 024490 138 MVGNAMTVTGVTMKRLRDDIKI--QLNLVETALALGATPRQATKQQV 182 (267)
Q Consensus 138 llGNsm~a~slal~r~~~~l~~--~~~~ie~~LalGAt~~eA~~~~~ 182 (267)
++.-+........+-.+++..+ +++-+|++.++|+|+++-....+
T Consensus 166 ilal~l~~~~~~~r~vR~~~~~~~~~~yV~aAra~G~s~~~il~rhi 212 (301)
T PRK15082 166 IIAVAIFSIPAFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHI 212 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHcCCChhhhhHHHh
Confidence 4444444444444445555543 45669999999999998775443
No 75
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=67.29 E-value=16 Score=38.80 Aligned_cols=116 Identities=17% Similarity=0.224 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHh--hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHH
Q 024490 103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMV--GNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ 180 (267)
Q Consensus 103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMll--GNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~ 180 (267)
+.+++....+.++.++.+.|. + =.+.-++|+++ |-+.+.+.+-.||+++++++ |-+.+||.
T Consensus 306 a~iaL~~~v~~tl~~l~l~g~-~---Lnl~siaGlIL~IGm~VD~~Ivi~Erireel~~-----------G~~~~~Av-- 368 (758)
T PRK13023 306 ALVALVVNIIILTAVLSLIGA-S---ISLASIAGLVLTIGLAVDAHILIYERVREDRRK-----------GYSVVQAM-- 368 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHCC-C---ccHHHHHHHHHHHHHhccCcEEEeeHHHHHHHc-----------CCCHHHHH--
Confidence 445555666655555555442 2 23555677766 77778888888999887643 45666665
Q ss_pred HHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024490 181 QVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMS 244 (267)
Q Consensus 181 ~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~ 244 (267)
+++.+.+..|.+++.-+.-+..+|=... |..|+. -.-+.+++.++++...+.+++
T Consensus 369 --~~g~~~~~~~Il~s~lTTlia~lpL~~~-----g~g~ik--~FAitliiGi~~S~~~al~vt 423 (758)
T PRK13023 369 --ESGFYRALSTIVDANLTTLIAALVLFLL-----GSGTVH--GFALTVAIGIGTTLFTTLTFT 423 (758)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hchhHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 5677778889999999999999995544 334432 222344455555544444443
No 76
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=66.68 E-value=56 Score=35.47 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHhhhhH--HHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHH
Q 024490 100 KYVAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAM--TVTGVTMKRLRDDIKIQLNLVETALALGATPRQA 177 (267)
Q Consensus 100 ~~~~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMllGNsm--~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA 177 (267)
-+++.+++-++.+.++.++.+.|.. =..+-++|++++=.| -...+-+|+.+...++ .|.+++||
T Consensus 358 ~liv~~~IPisi~~t~~~m~~~g~s----lN~~SL~gl~laiG~lVDdaIVV~Eni~r~~~~----------~g~~~~~A 423 (1021)
T PF00873_consen 358 ALIVALSIPISILGTFIFMYLFGIS----LNIMSLAGLILAIGMLVDDAIVVVENIYRHLEE----------EGKSPLEA 423 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT----BEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HCCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC----chHHHHHhHHHhcccccccceehHHHHHHHHHH----------hccchHHH
Confidence 3445566666666666666665532 345556665553222 2223333433333222 27788777
Q ss_pred HHHHHHHHHHHhhcccccccchhheeechHHHH
Q 024490 178 TKQQVKRSLVIALSPVLDNAKTVGLISLPGAMT 210 (267)
Q Consensus 178 ~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMt 210 (267)
.. ++.+.-..|.+.++-|.-.|++|=.+.
T Consensus 424 a~----~~~~ev~~~i~~stlTti~vF~Pl~f~ 452 (1021)
T PF00873_consen 424 AI----EGTKEVAPPILASTLTTIAVFLPLLFM 452 (1021)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHHTCGGGGS
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 65 455557789999999999999997653
No 77
>PRK10998 malG maltose transporter permease; Provisional
Probab=64.85 E-value=1.1e+02 Score=27.88 Aligned_cols=40 Identities=28% Similarity=0.180 Sum_probs=26.8
Q ss_pred HHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhh
Q 024490 151 KRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIAL 190 (267)
Q Consensus 151 ~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al 190 (267)
--....+++ +++.+|++..+||+++|....++=..++.++
T Consensus 175 ~~~~~~~~~i~~~l~eAA~~~Gas~~~~f~~I~lP~~~p~i 215 (296)
T PRK10998 175 WTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPIL 215 (296)
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCCHhHHHHHHHHHhhHHHH
Confidence 333444444 5677999999999999887765554444433
No 78
>TIGR01253 thiP thiamine ABC transporter, permease protein. The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).
Probab=64.09 E-value=1.6e+02 Score=29.33 Aligned_cols=53 Identities=21% Similarity=0.164 Sum_probs=37.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHH----HHHHHHHHHh
Q 024490 137 MMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATK----QQVKRSLVIA 189 (267)
Q Consensus 137 MllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~----~~~r~Ai~~a 189 (267)
+++++.......+..-+.+.+++ +++.+|++..+||++||..+ |..|+++-++
T Consensus 402 li~~~~~~~~P~~~~~~~~~l~~i~~~l~EAA~~~Gas~~~~f~~I~lPll~p~i~~~ 459 (519)
T TIGR01253 402 VIFCNALMAIPFALKILEAPFHDIMARYEMLCNSLGIEGWQRFKLIELKALKAPLAQA 459 (519)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHhhHHhhHHHHHHH
Confidence 45677777777777777777755 45568999999999998776 4455555443
No 79
>PRK09881 D-ala-D-ala transporter subunit; Provisional
Probab=64.03 E-value=1.2e+02 Score=28.09 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=22.5
Q ss_pred HHHHHHHHHH--HhHHHHHHHHHCCCCHHHHHHHH
Q 024490 149 TMKRLRDDIK--IQLNLVETALALGATPRQATKQQ 181 (267)
Q Consensus 149 al~r~~~~l~--~~~~~ie~~LalGAt~~eA~~~~ 181 (267)
-.+-.+++.. .+++-+|++.++|+|+++-.+..
T Consensus 171 ~~r~vr~~~l~~~~~~yVeaAra~G~s~~~ii~~h 205 (296)
T PRK09881 171 YVRLARGQALVVRQYTYVQAAKTFGASRWHLISWH 205 (296)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHcCcCcceeeehh
Confidence 3444445542 24667999999999999876443
No 80
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=63.24 E-value=1.3e+02 Score=27.85 Aligned_cols=68 Identities=15% Similarity=0.318 Sum_probs=41.1
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHc
Q 024490 136 GMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMG 215 (267)
Q Consensus 136 GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILg 215 (267)
-+++|-+..-...=++||++|.+++.+ ++|| ++++++..--|.+-+ ++.+.=|..+ ..++
T Consensus 209 ~l~lgvgidy~i~l~~r~ree~~~g~~-----------~~~a----i~~a~~~~g~~i~~s----~ltt~~gf~~-L~~s 268 (333)
T PF03176_consen 209 VLLLGVGIDYSIHLINRYREELRRGMS-----------RKEA----IRRAVRSTGRAILLS----ALTTAIGFGS-LLFS 268 (333)
T ss_pred hhHHHhhhhhHHHHHHHHHHHHHhccc-----------hHHH----HHHHHhccCchhHHH----HHHHHHHHHH-HHHh
Confidence 456777777777778899888876544 3333 345666666666553 3333334333 6667
Q ss_pred CCCHHHHH
Q 024490 216 GASPLEAI 223 (267)
Q Consensus 216 G~sPl~A~ 223 (267)
+..|+...
T Consensus 269 ~~~~~~~~ 276 (333)
T PF03176_consen 269 PFPPLRQF 276 (333)
T ss_pred hhhHHHHH
Confidence 77776644
No 81
>PHA01514 O-antigen conversion protein C
Probab=62.21 E-value=1.5e+02 Score=30.02 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=22.3
Q ss_pred HHHHHhccCCCCccchhhhhhHHhhhhHHHHH
Q 024490 116 LMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTG 147 (267)
Q Consensus 116 ~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~s 147 (267)
+.++...-.++.||-++=.+|.+..-++....
T Consensus 308 Gpll~Lk~p~~~PRvligfg~~m~~~~~~~~~ 339 (485)
T PHA01514 308 GPMIFLKSPIYAPRVLIGMGGFMFFCCLCVFY 339 (485)
T ss_pred chHHHhcCccccceeeeehHHHHHHHHHHHHH
Confidence 34444455569999999999988876665433
No 82
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=60.80 E-value=93 Score=34.22 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHH
Q 024490 171 GATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMT 210 (267)
Q Consensus 171 GAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMt 210 (267)
|-+++||...-. +.-..|.+.++.+...+.+|=++.
T Consensus 424 G~~~~~A~~~~~----~~v~~~i~~~tltt~~~f~Pl~~~ 459 (1049)
T PRK15127 424 GLPPKEATRKSM----GQIQGALVGIAMVLSAVFVPMAFF 459 (1049)
T ss_pred CCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 678888875544 445567888888888899998883
No 83
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=60.34 E-value=1.6e+02 Score=32.42 Aligned_cols=35 Identities=11% Similarity=-0.026 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHH
Q 024490 171 GATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAM 209 (267)
Q Consensus 171 GAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmM 209 (267)
|-+++||+. ++.+.-..|.+.++-|.-.+++|=++
T Consensus 434 ~~~~~~A~~----~g~~~~~~pil~stlTti~~flPl~~ 468 (1051)
T TIGR00914 434 LKERLHEVF----AASREVRRPLIFGQLIITLVFLPIFT 468 (1051)
T ss_pred cccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777754 46666788999999999999999865
No 84
>PRK15050 2-aminoethylphosphonate transport system permease PhnU; Provisional
Probab=58.53 E-value=1.5e+02 Score=27.09 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=41.4
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhh
Q 024490 135 AGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIAL 190 (267)
Q Consensus 135 ~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al 190 (267)
.|++++...........-+.+.+++ +++.+|++..+|++++|....+.-..++.++
T Consensus 162 ~~vil~~~~~~~p~~~~~~~~~l~~i~~~l~eAA~~lGas~~~~~~~I~lP~l~p~i 218 (296)
T PRK15050 162 GGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPAL 218 (296)
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHHHHHhhHHHH
Confidence 4778888877777777777777765 4566899999999999998765544444333
No 85
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=57.95 E-value=2.2e+02 Score=28.96 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=63.2
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHHHHhHHH-HHHHHHCCCCHHHHHHHH----HHHHHHHh-hcccccccchhh-----
Q 024490 133 PVAGMMVGNAMTVTGVTMKRLRDDIKIQLNL-VETALALGATPRQATKQQ----VKRSLVIA-LSPVLDNAKTVG----- 201 (267)
Q Consensus 133 Pi~GMllGNsm~a~slal~r~~~~l~~~~~~-ie~~LalGAt~~eA~~~~----~r~Ai~~a-l~P~i~~m~~vG----- 201 (267)
+..=++++|++.....+.+.....+++..++ -|++.++|+++++..+.+ +|.++.++ +.--+++|+..+
T Consensus 407 t~~ilv~a~~~~~~p~a~r~~~a~l~qi~~~leeaa~sLG~~~~~~~~~I~lPll~p~l~~a~~l~F~~s~~Elsat~lL 486 (540)
T COG1178 407 TLLILVLAYALRFLPFAVRSLRAALRQIDPSLEEAARSLGASGLRRFRRITLPLLRPGLLAAAALVFALSIGELSATLLL 486 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHcCCcHhhHhHHhhhhcchHHHHHHHHHHHHHHHhhhcEEEEE
Confidence 6667899999999999999999999886655 578999999999887654 45555433 333344444333
Q ss_pred ----eeechHHHHHHHHcCCCHHHHHHHHHHHH
Q 024490 202 ----LISLPGAMTGMIMGGASPLEAIQLQIVVM 230 (267)
Q Consensus 202 ----lVslPGmMtGqILgG~sPl~A~~yQi~Im 230 (267)
--++|-.-..+. +..+--+|+.+=.+++
T Consensus 487 ~~~~~~TL~~~iy~~~-~~~~~~~Aaa~a~il~ 518 (540)
T COG1178 487 GSPGTRTLTVYIYNLL-SDGRYGDAAALALILL 518 (540)
T ss_pred cCCCCeeHHHHHHHHh-cCcchHHHHHHHHHHH
Confidence 334444444333 3444445555444433
No 86
>COG4606 CeuB ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
Probab=57.51 E-value=40 Score=31.94 Aligned_cols=38 Identities=16% Similarity=0.446 Sum_probs=31.5
Q ss_pred HHHHHHhccCCCCccchhhhhhHHhhhhHHHHHHHHHH
Q 024490 115 MLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKR 152 (267)
Q Consensus 115 l~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r 152 (267)
+.++...+..|++.+-++|+.|+++||..++++--...
T Consensus 122 ~~F~~~l~ri~~k~~i~VPLiGIm~Ggvi~sitTFiAy 159 (321)
T COG4606 122 LLFMMILRRIKLKDVLFVPLIGIMFGGVISSITTFIAY 159 (321)
T ss_pred HHHHHHHHhccccceEeehhHHHHHHhHHHHHHHHHHH
Confidence 45566678889999999999999999999998865543
No 87
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transporter, permease protein.
Probab=55.43 E-value=1.4e+02 Score=29.83 Aligned_cols=54 Identities=7% Similarity=-0.009 Sum_probs=33.1
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHH----HHHHHHHH
Q 024490 135 AGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQ----QVKRSLVI 188 (267)
Q Consensus 135 ~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~----~~r~Ai~~ 188 (267)
.+++++........+.--+.+.+++ +++.+|++..+|||++|..+. ..|.++.+
T Consensus 410 ~~iil~~~~~~~~~~~~~~~~~l~~i~~~l~EAA~~lGas~~~~f~~I~lPl~~p~i~~ 468 (546)
T TIGR03262 410 ALLVLCTVVHFYTVSHLTAVTALKQIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILD 468 (546)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHhcCHHHHHHHHHcCCchhhhhhheeccccHHHHHH
Confidence 3444444443333333445666655 567789999999999988754 34544444
No 88
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=55.15 E-value=1.8e+02 Score=27.04 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=35.7
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHH
Q 024490 135 AGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQV 182 (267)
Q Consensus 135 ~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~ 182 (267)
.+++++...........-+.+.+++ +++.+|++..+||++||..+.+.
T Consensus 185 ~~v~l~~~~~~~p~~~~~~~~~l~~I~~~l~EAA~~~GAs~~~~f~~I~ 233 (317)
T PRK10683 185 LAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVI 233 (317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHhhhhheeh
Confidence 4566666666666666777777766 67789999999999999876443
No 89
>COG0577 SalY ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=54.88 E-value=99 Score=27.80 Aligned_cols=44 Identities=25% Similarity=0.187 Sum_probs=37.1
Q ss_pred HHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccc
Q 024490 151 KRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVL 194 (267)
Q Consensus 151 ~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i 194 (267)
+.++..+.+|+.|+--..++|++++|-...+..+++--+++..+
T Consensus 306 ~~~~~~v~er~~eigi~ka~G~~~~~i~~~~~~e~~~~~~~g~~ 349 (419)
T COG0577 306 NILLVSVLERTREIGILKALGATRREILLQFLLEALILGLIGGL 349 (419)
T ss_pred hhHHHHHHHHHHHHhHHHhhCCchHHHHHHHHHHHHHHHHHHHH
Confidence 34667889999999999999999999999999998776665443
No 90
>PRK10814 outer membrane-specific lipoprotein transporter subunit LolC; Provisional
Probab=53.93 E-value=31 Score=32.80 Aligned_cols=34 Identities=18% Similarity=-0.011 Sum_probs=30.4
Q ss_pred HHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 024490 153 LRDDIKIQLNLVETALALGATPRQATKQQVKRSL 186 (267)
Q Consensus 153 ~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai 186 (267)
+...+.+|+.|+-.+.|+|++++|-.+-++.+++
T Consensus 286 l~~~v~eR~rEigiLralG~~~~~I~~~~~~E~~ 319 (399)
T PRK10814 286 LGLLVMEKQGEVAILQTQGLTRRQIMMVFMVQGA 319 (399)
T ss_pred HHHhHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3456779999999999999999999999999987
No 91
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=53.56 E-value=1.3e+02 Score=32.93 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHH
Q 024490 171 GATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMT 210 (267)
Q Consensus 171 GAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMt 210 (267)
|-+++||+.+-.+ .-..|.+.+.-+...+.+|=++.
T Consensus 424 G~~~~~Ai~~a~~----~~~~~i~~stltti~~flPl~~~ 459 (1037)
T PRK10555 424 GLTPREATRKSMG----QIQGALVGIAMVLSAVFVPMAFF 459 (1037)
T ss_pred CCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888766544 45567888888889999998874
No 92
>PRK10952 glycine betaine transporter membrane protein; Provisional
Probab=51.78 E-value=2.3e+02 Score=27.30 Aligned_cols=64 Identities=13% Similarity=0.160 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccc--chhheeechHH
Q 024490 145 VTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNA--KTVGLISLPGA 208 (267)
Q Consensus 145 a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m--~~vGlVslPGm 208 (267)
+..-..+...+++++ +++.+|++.++|+|++|....+.-....-.++..+++. .+.+.+.+..+
T Consensus 219 ~~pp~irlt~~gl~~v~~e~iEAAra~Gas~~qil~~ViLP~alP~Ilagi~~~~~~al~~vvia~l 285 (355)
T PRK10952 219 ALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASM 285 (355)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHcCcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445566655 67779999999999999999888887777777766533 33344444444
No 93
>PRK09579 multidrug efflux protein; Reviewed
Probab=51.14 E-value=87 Score=34.32 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHH
Q 024490 171 GATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTG 211 (267)
Q Consensus 171 GAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtG 211 (267)
|-+++||..+ +.+.-..|.+-+.-|...+.+|=++..
T Consensus 416 G~~~~~A~~~----~~~~~~~pil~stlTti~~f~Pl~f~~ 452 (1017)
T PRK09579 416 GKSPFDAALE----GAREIAMPVVSMTITLAAVYAPIGFLT 452 (1017)
T ss_pred CCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6678777654 555577788888888888999987754
No 94
>PRK10561 glycerol-3-phosphate transporter permease; Provisional
Probab=50.46 E-value=1.9e+02 Score=25.97 Aligned_cols=53 Identities=13% Similarity=0.032 Sum_probs=37.1
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 024490 135 AGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLV 187 (267)
Q Consensus 135 ~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~ 187 (267)
.++++++.......+.--+.+.+++ +++.+|++..+||++||..+.+.-..++
T Consensus 144 ~~vii~~~~~~~p~~~~~~~~~l~~i~~~l~EAA~~~Gas~~~~f~~I~lP~~~ 197 (280)
T PRK10561 144 FLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIA 197 (280)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHcCCcHhhHhHhhhHhhhh
Confidence 4556666665556665666677755 5677999999999999988766544433
No 95
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=49.71 E-value=1.5e+02 Score=32.49 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHH
Q 024490 171 GATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMT 210 (267)
Q Consensus 171 GAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMt 210 (267)
|-+++||.. ++.+.-..|.+.+.-+.-.+.+|=++.
T Consensus 424 g~~~~~A~~----~~~~~~~~~i~~ttltti~~flPl~~~ 459 (1044)
T TIGR00915 424 GLPPKEATR----KSMGQIQGALVGIAMVLSAVFVPMAFF 459 (1044)
T ss_pred CCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888864 455556777778887888899998874
No 96
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=49.13 E-value=64 Score=30.44 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhc
Q 024490 150 MKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALS 191 (267)
Q Consensus 150 l~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~ 191 (267)
.+.-.-++..||+|||-+-=+|||.+--.+||+.+.+..++.
T Consensus 186 ~NtiR~~i~sRr~eIeVmklvGAt~~fI~~PFl~~g~~~gl~ 227 (297)
T COG2177 186 GNTIRLAIFSRRREIEVMKLVGATDSFIRRPFLYEGMLIGLL 227 (297)
T ss_pred HHHHHHHHHhhhhHHHHHHHhccchHHHHhHHHHHHHHHHHH
Confidence 344456788899999999999999999999999997665554
No 97
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=48.92 E-value=81 Score=33.63 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCC--HHHHHHHHHHHHHHHhhcccc
Q 024490 140 GNAMTVTGVTMKRLRDDIKIQLNLVETALALGAT--PRQATKQQVKRSLVIALSPVL 194 (267)
Q Consensus 140 GNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt--~~eA~~~~~r~Ai~~al~P~i 194 (267)
+-+|+++..+..+..+|+|+|-+|+...+.==+. ....++-..|.|+|.=+.|.+
T Consensus 590 al~m~AVg~aA~~mV~EVRRQFreipGimeG~~kPDY~~cV~I~T~aAlkeMi~Pgl 646 (765)
T PLN02255 590 AMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGA 646 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcchhcCCCCCChHHHHHHHHHHHHHhhhHHHH
Confidence 3578999999999999999999987554421121 223344444555655555544
No 98
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
Probab=48.11 E-value=21 Score=33.52 Aligned_cols=70 Identities=26% Similarity=0.340 Sum_probs=39.8
Q ss_pred HHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccc--cchhheeechHH---HHHHHHcCCCHH---H
Q 024490 151 KRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDN--AKTVGLISLPGA---MTGMIMGGASPL---E 221 (267)
Q Consensus 151 ~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~--m~~vGlVslPGm---MtGqILgG~sPl---~ 221 (267)
=-.++.+++ +++.+|++..|||+|+|+...+ ..|.--. .+..-+|.+|-+ .+=+++||.+-. +
T Consensus 170 LPly~al~~id~~L~eAA~dLGA~~~~~F~~V--------ilPLs~pGi~aG~~lVFi~alG~fi~P~lLGG~~~~~ig~ 241 (287)
T COG1176 170 LPLYAALEKIDPSLLEAARDLGASPFQTFRRV--------ILPLSLPGIIAGSLLVFIPALGSFVTPALLGGPKVLMIGN 241 (287)
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCChhhHhhhe--------eecCChHHHHHHHHHHHHHHhHHHHHHHHhcCCccccHHH
Confidence 344555544 6778999999999999876543 3442110 111223444432 345778886543 4
Q ss_pred HHHHHHH
Q 024490 222 AIQLQIV 228 (267)
Q Consensus 222 A~~yQi~ 228 (267)
.+..|..
T Consensus 242 lI~~q~~ 248 (287)
T COG1176 242 LIYQQFL 248 (287)
T ss_pred HHHHHHh
Confidence 5555654
No 99
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=47.62 E-value=87 Score=33.29 Aligned_cols=102 Identities=17% Similarity=0.295 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHH
Q 024490 103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQV 182 (267)
Q Consensus 103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~ 182 (267)
+.+++..-.++++.++.+.+ .|++.-. |--.=+++|=++|-..+-.||+++++++++ +.+ .++.+
T Consensus 606 aiial~~dvii~~g~~~l~~-~~~~~~~-iaall~iiGysvndtIvi~dRirE~~~~~~---------~~~----~~~~v 670 (755)
T PRK13024 606 AILALLHDVLIVIGFFSLFR-LEVDLTF-IAAILTIIGYSINDTVVVFDRIRENLRLYK---------KKD----LREIV 670 (755)
T ss_pred HHHHHHHHHHHHHHHHHHhc-ceEcHHH-HHHHHHHHhheeeceEEEEhHHHHHhhhcC---------CCC----HHHHH
Confidence 44566666666666665544 3444432 333346789999999999999999987432 233 34445
Q ss_pred HHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHH
Q 024490 183 KRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQ 224 (267)
Q Consensus 183 r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~ 224 (267)
++|++..+.++++..-++-++. ....+-|.+++.-..
T Consensus 671 ~~si~~tl~rti~ts~tt~~~~-----~~L~~~g~~~i~~fa 707 (755)
T PRK13024 671 NKSINQTLSRTINTSLTTLLVL-----LALLIFGGSSLRNFS 707 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHhcCchHHHHH
Confidence 6677777777777655544433 334455666665443
No 100
>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein. This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter.
Probab=47.45 E-value=2.1e+02 Score=25.66 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=38.7
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHH
Q 024490 133 PVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQ 181 (267)
Q Consensus 133 Pi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~ 181 (267)
...|++++...........-+++.+++ +++.+|++..+|++++|..+..
T Consensus 141 ~~~~vi~~~~~~~~p~~~~~~~~~l~~i~~~~~eaA~~lGas~~~~~~~i 190 (271)
T TIGR00969 141 TWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRV 190 (271)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHcCCChhheeeee
Confidence 345778888888888788888877766 6677999999999999887543
No 101
>TIGR02213 lolE_release lipoprotein releasing system, transmembrane protein LolE. This protein is part of an unusual ABC transporter complex that releases lipoproteins from the periplasmic side of the bacterial inner membrane, rather than transport any substrate across the inner membrane. In some species, the permease-like transmembrane protein is represented by two paralogs, LolC and LolE, both in the LolCDE complex. This family consists of LolE, as found in E. coli and related species.
Probab=45.97 E-value=48 Score=31.75 Aligned_cols=40 Identities=18% Similarity=0.068 Sum_probs=34.5
Q ss_pred HHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhh
Q 024490 151 KRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIAL 190 (267)
Q Consensus 151 ~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al 190 (267)
+.+...+++|+.|+-.+.++|+++++-.+.++.+++-.++
T Consensus 286 ~~~~~~v~eR~~ei~~l~alG~~~~~i~~~~~~e~~~l~~ 325 (411)
T TIGR02213 286 STLIMAVKDKQGDIAILRTLGANDGLIKRIFVWYGLQAGM 325 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 3467788999999999999999999999999998776543
No 102
>TIGR00002 S16 ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles.
Probab=45.82 E-value=21 Score=27.16 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=26.1
Q ss_pred HHHHhHHHHHHHHHCCCCHHHHHHHHHHHH
Q 024490 156 DIKIQLNLVETALALGATPRQATKQQVKRS 185 (267)
Q Consensus 156 ~l~~~~~~ie~~LalGAt~~eA~~~~~r~A 185 (267)
+++-+.++++++|+.||-|.|.+..+++++
T Consensus 46 ~i~l~~~ri~~Wl~~GAqps~tV~~Ll~~~ 75 (78)
T TIGR00002 46 RVKLNVERIKYWLSKGAQPTDTVRNLLKKA 75 (78)
T ss_pred EEEEcHHHHHHHHHCCCccCHHHHHHHHHc
Confidence 456678899999999999999999998863
No 103
>PRK11146 outer membrane-specific lipoprotein transporter subunit LolE; Provisional
Probab=45.78 E-value=50 Score=31.55 Aligned_cols=40 Identities=20% Similarity=0.073 Sum_probs=34.1
Q ss_pred HHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhh
Q 024490 151 KRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIAL 190 (267)
Q Consensus 151 ~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al 190 (267)
+.+...+.+|+.|+-.+.++|+|++|-.+.++-+++-.++
T Consensus 287 ~t~~~~v~eR~rEigilralG~~~~~I~~~~l~e~~~~~~ 326 (412)
T PRK11146 287 STLVMAVKDKSGDIAILRTLGAKDGLIRAIFVWYGLLAGL 326 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 4456678999999999999999999999999998765543
No 104
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=44.97 E-value=1e+02 Score=32.57 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCH-H-HHHHHHHHHHHHHhhccccc
Q 024490 140 GNAMTVTGVTMKRLRDDIKIQLNLVETALALGATP-R-QATKQQVKRSLVIALSPVLD 195 (267)
Q Consensus 140 GNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~-~-eA~~~~~r~Ai~~al~P~i~ 195 (267)
+-+|+++..+..+..+|+|+|-.|+...+.==+.| . ..++-..|.|+|.=+.|.+-
T Consensus 527 al~m~AVg~aA~~mV~EVRRQFreipGi~eG~~kPdY~~cV~I~T~aAlkeMi~Pgll 584 (697)
T TIGR01104 527 SMTMKSVGRAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGLL 584 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCCcHHHHHHHHHHHHHhhhhhhHH
Confidence 34789999999999999999999886655322222 1 23444556666666666543
No 105
>TIGR02212 lolCE lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC.
Probab=44.46 E-value=66 Score=30.28 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=35.9
Q ss_pred HHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhc
Q 024490 151 KRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALS 191 (267)
Q Consensus 151 ~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~ 191 (267)
+.+...+.+|+.|+-.+.|+|+|++|-.+-++.+++--++.
T Consensus 286 ~t~~~~v~eR~rEigilralG~~~~~I~~~~l~E~~~l~l~ 326 (411)
T TIGR02212 286 STLVMAVKDKQGDIAILRTLGATPGQIMRIFIVQGLLIGVI 326 (411)
T ss_pred HHHHhhhHHhhhHHHHHHHcCCChhhHHHHHHHHHHHHHHH
Confidence 56677889999999999999999999999999998775544
No 106
>PRK14525 rpsP 30S ribosomal protein S16; Provisional
Probab=43.55 E-value=23 Score=27.61 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=26.6
Q ss_pred HHHHhHHHHHHHHHCCCCHHHHHHHHHHHH
Q 024490 156 DIKIQLNLVETALALGATPRQATKQQVKRS 185 (267)
Q Consensus 156 ~l~~~~~~ie~~LalGAt~~eA~~~~~r~A 185 (267)
+++-+.++++++|+.||-+.|.+..+++++
T Consensus 48 ~i~ln~eri~~WL~~GAqpT~tV~~Ll~~~ 77 (88)
T PRK14525 48 RIELKVERIEHWLKAGAKPSQTVAMILKRA 77 (88)
T ss_pred eEEEcHHHHHHHHHCCCccCHHHHHHHHHc
Confidence 456678899999999999999999999874
No 107
>CHL00005 rps16 ribosomal protein S16
Probab=43.44 E-value=24 Score=27.17 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=25.5
Q ss_pred HHHhHHHHHHHHHCCCCHHHHHHHHHHHH
Q 024490 157 IKIQLNLVETALALGATPRQATKQQVKRS 185 (267)
Q Consensus 157 l~~~~~~ie~~LalGAt~~eA~~~~~r~A 185 (267)
.+-+.++++++|+.||-|.|.+..+++++
T Consensus 46 ~~ln~eri~~Wl~~GAqpt~tV~~Ll~~~ 74 (82)
T CHL00005 46 TYLNVPAILYFLEKGAQPTETVYDILKKA 74 (82)
T ss_pred cEEeHHHHHHHHHCcCccCHHHHHHHHHc
Confidence 35578889999999999999999999873
No 108
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=41.48 E-value=68 Score=27.94 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCc---cchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHH
Q 024490 106 SILAGTAVTMLMLVVLNVFPFTP---RYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQV 182 (267)
Q Consensus 106 si~~~~~~~l~~~~~~~~~~~~~---ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~ 182 (267)
++..+...++..+.+.| .|++. --++.+.|+.+-|+ ..-.||++++.++ . -|.+++||..
T Consensus 79 ~i~~~i~~t~g~m~l~G-~~ln~~s~~glil~iGi~Vd~a----Ivv~e~~~~~~~~----~-----~g~~~~~Av~--- 141 (192)
T TIGR00916 79 ALVHDVILILGVLSLFG-ATLTLPGIAGLLTIIGYSVDDT----VVIFDRIREELRK----Y-----KGRTFREAIN--- 141 (192)
T ss_pred HHHHHHHHHHHHHHHHC-CcccHHHHHHHHHHHHHhhcCe----EEehHHHHHHHhh----c-----CCCCHHHHHH---
Confidence 44444444444554444 22322 22333334444333 3456677666532 0 1567766654
Q ss_pred HHHHHHhhcccccccchhheeechHHHH
Q 024490 183 KRSLVIALSPVLDNAKTVGLISLPGAMT 210 (267)
Q Consensus 183 r~Ai~~al~P~i~~m~~vGlVslPGmMt 210 (267)
++.+....|.+.+.-+..+..+|=++.
T Consensus 142 -~a~~~~~~~il~ttlTtii~f~pl~~~ 168 (192)
T TIGR00916 142 -LGINQTLSRIIDTNVTTLLAVLALYVF 168 (192)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667779999999999999996554
No 109
>PF09913 DUF2142: Predicted membrane protein (DUF2142); InterPro: IPR018674 This family of conserved hypothetical proteins has no known function.
Probab=41.29 E-value=89 Score=29.61 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=9.8
Q ss_pred CCccchhhhhhH
Q 024490 126 FTPRYIIPVAGM 137 (267)
Q Consensus 126 ~~~ry~IPi~GM 137 (267)
.++||++|+.-+
T Consensus 377 vQGRYflP~l~l 388 (389)
T PF09913_consen 377 VQGRYFLPILPL 388 (389)
T ss_pred ccCcHHHHHHHH
Confidence 689999998643
No 110
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein.
Probab=41.15 E-value=2.8e+02 Score=25.21 Aligned_cols=52 Identities=21% Similarity=0.141 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccc
Q 024490 146 TGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNA 197 (267)
Q Consensus 146 ~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m 197 (267)
.....+...+.+++ +++.+|++.++|+|+||..+...-...+..++..+++.
T Consensus 162 ~p~~~~~~~~~l~~v~~~~~EaA~~lGas~~q~~~~viLP~~~p~i~~g~~~~ 214 (267)
T TIGR03416 162 IPAPIRLTHLGISSVPQELVEAGEAFGATPSQLLWKVELPYAMPQIMAGLTQT 214 (267)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHHhHHhhHHHHHHHHHHH
Confidence 33444555556544 56668999999999999998887777777777665543
No 111
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=40.87 E-value=1.4e+02 Score=31.96 Aligned_cols=123 Identities=19% Similarity=0.200 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHH
Q 024490 105 ASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKR 184 (267)
Q Consensus 105 ~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~ 184 (267)
+++..=.++++.++.+.+ .+++.-.+-- .=.++|-|+|-..+-.||.++++++.+ ++..++.+.+
T Consensus 609 iALiHDvlivlg~fsl~~-~e~~l~~IAA-lLTiiGYSiNDTIVVfDRIREn~~~~~-------------~~~~~eivn~ 673 (758)
T PRK13023 609 LSTLHDVVILSGMFIVFR-MEFNLWSVAA-ILTIIGYSLNDTVVIYDRVRENLRRYK-------------SAPLPAIIDA 673 (758)
T ss_pred HHHHHHHHHHHHHHHHhC-ceecHHHHHH-HHHHHhhcccCeEEEeHHHHHHHhhcC-------------CCCHHHHHHH
Confidence 444444555555555554 3344332222 225689999999999999999997643 2456677788
Q ss_pred HHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024490 185 SLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCW 249 (267)
Q Consensus 185 Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~ 249 (267)
|+...+.-++++--|+=++.++=+ ++||. ++.- +-+..++.+.+++.-|.+++.-+-+
T Consensus 674 SInqTl~RTI~TS~TTll~~l~L~----ifGg~-~i~~--Fal~lliGiv~GtySSIfIAspl~~ 731 (758)
T PRK13023 674 SINQTLSRTLLTSFVTFLAHVPLY----AFGGS-EIRM--FALALSVGIIVASYSSIFIAAPLLV 731 (758)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH----HhcCc-cHHH--HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 888888888887666655555522 56664 3432 2355666777766666666555443
No 112
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
Probab=40.84 E-value=2.8e+02 Score=25.22 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=45.2
Q ss_pred hhhhhhHHhhhhHHHHHHH-----HHHHHHHHHH-hHHHHHHHHHCCCCHHHHHH--------HHHHHHHHHhhcccccc
Q 024490 131 IIPVAGMMVGNAMTVTGVT-----MKRLRDDIKI-QLNLVETALALGATPRQATK--------QQVKRSLVIALSPVLDN 196 (267)
Q Consensus 131 ~IPi~GMllGNsm~a~sla-----l~r~~~~l~~-~~~~ie~~LalGAt~~eA~~--------~~~r~Ai~~al~P~i~~ 196 (267)
+||+.|.=...+..+.-+- +++-+.++++ +.+.+|++-+.|.|+||=.+ |.+=..+|.++.=++..
T Consensus 82 lip~~GiG~~PAiiAL~lYsLLPIvrNT~~GL~~V~~~v~EAa~gmGMT~~Q~L~~VelPlAlPvIlaGIR~a~V~~ig~ 161 (221)
T COG1174 82 LIPVLGIGLTPAIIALFLYSLLPIVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVELPLALPVILAGIRTAVVINIGT 161 (221)
T ss_pred HHHHhcCCccHHHHHHHHHHHhHHHHHHHHHHhcCCHHHHHHHHhcCCCHHHHHHHhhccccHHHHHhhHHHHHHHHHHH
Confidence 5788884444444444433 3455566654 66679999999999999765 55667777777666554
Q ss_pred cc
Q 024490 197 AK 198 (267)
Q Consensus 197 m~ 198 (267)
..
T Consensus 162 At 163 (221)
T COG1174 162 AT 163 (221)
T ss_pred HH
Confidence 43
No 113
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=40.69 E-value=3.8e+02 Score=27.81 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=33.5
Q ss_pred HHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhh
Q 024490 153 LRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIAL 190 (267)
Q Consensus 153 ~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al 190 (267)
+.-..++|+.|+-.+.++|||++|-.+-++++++.-++
T Consensus 700 ~~~~v~~R~rEiai~kalGas~~~I~~~~l~E~~~l~~ 737 (803)
T TIGR03434 700 LAYSVAQRTREIGIRMALGAQRGDVLRLVLRQGLRLAA 737 (803)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 44478899999999999999999999999999887664
No 114
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=40.21 E-value=73 Score=31.03 Aligned_cols=8 Identities=38% Similarity=0.522 Sum_probs=3.9
Q ss_pred HHHCCCCH
Q 024490 167 ALALGATP 174 (267)
Q Consensus 167 ~LalGAt~ 174 (267)
.+-.|+.+
T Consensus 131 vLIiGag~ 138 (451)
T TIGR03023 131 VLIVGAGE 138 (451)
T ss_pred EEEEeCCH
Confidence 44445544
No 115
>PRK10913 dipeptide transporter; Provisional
Probab=39.83 E-value=3.1e+02 Score=25.41 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=23.2
Q ss_pred HHHHHHHH--HHhHHHHHHHHHCCCCHHHHHHHHHHH
Q 024490 150 MKRLRDDI--KIQLNLVETALALGATPRQATKQQVKR 184 (267)
Q Consensus 150 l~r~~~~l--~~~~~~ie~~LalGAt~~eA~~~~~r~ 184 (267)
.+-.+++. ..+++-+|++.++|+|+++-....+-+
T Consensus 177 ar~~r~~~l~~~~~~yV~aAra~G~s~~~Ii~rhilP 213 (300)
T PRK10913 177 VRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILP 213 (300)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHcCCChHHhHHHHHHH
Confidence 34344443 335566999999999999876544433
No 116
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=39.60 E-value=3.5e+02 Score=28.95 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=7.7
Q ss_pred CCCHHHHHHHHHHH
Q 024490 171 GATPRQATKQQVKR 184 (267)
Q Consensus 171 GAt~~eA~~~~~r~ 184 (267)
|.+++||...-.|+
T Consensus 354 g~~~~~A~~~a~~~ 367 (862)
T TIGR03480 354 GGNHREALSVAARR 367 (862)
T ss_pred CCCHHHHHHHHHHH
Confidence 55666665544443
No 117
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=38.89 E-value=1.4e+02 Score=32.64 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHH
Q 024490 170 LGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTG 211 (267)
Q Consensus 170 lGAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtG 211 (267)
-|.+++||... +.+....|.+.+.-+.-.+.+|=++.+
T Consensus 416 ~g~~~~~A~~~----~~~~~~~~i~~stltti~~f~Pl~~~~ 453 (1025)
T PRK10614 416 AGMKPLQAALQ----GVREVGFTVLSMSLSLVAVFLPLLLMG 453 (1025)
T ss_pred cCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 37788888665 455566777777777777888876643
No 118
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=38.51 E-value=1.5e+02 Score=31.29 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCC--HHHHHHHHHHHHHHHhhcccc
Q 024490 140 GNAMTVTGVTMKRLRDDIKIQLNLVETALALGAT--PRQATKQQVKRSLVIALSPVL 194 (267)
Q Consensus 140 GNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt--~~eA~~~~~r~Ai~~al~P~i 194 (267)
+-+|+++..+..+..+|+|+|-+|+..-+-=-+. ..+..+-..|.|+|.-+.|.+
T Consensus 502 ~l~m~AVg~aA~~mV~EVRrQFre~pGi~eg~~kPdY~~cV~I~T~~AlkeMi~P~l 558 (666)
T PRK00733 502 ALAMTAVGRAAGAMVEEVRRQFREIPGIMEGTAKPDYARCVDISTKAALKEMILPGL 558 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHhhhhHHH
Confidence 3478999999999999999988877644422221 122333334555555555544
No 119
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=37.84 E-value=5.6e+02 Score=27.75 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=41.7
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHc
Q 024490 136 GMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMG 215 (267)
Q Consensus 136 GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILg 215 (267)
.+++|=++.=...-++||+++.++ |.+++||.. ++++..--|.+-+.-++-...+|-.+.
T Consensus 239 ~l~lGl~vDy~I~lv~r~~ee~~~-----------g~~~~~Av~----~a~~~~g~~I~~s~lT~~~gf~~l~~~----- 298 (910)
T TIGR00833 239 ALVIGAGTDYAVFLTGRYHEERRK-----------GESLEEAAA----EALRGTGKAILGSALTVAVAFLALSLA----- 298 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-----------CCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 455676666666678888877654 456666664 455555666666666666666665544
Q ss_pred CCCHHHHH
Q 024490 216 GASPLEAI 223 (267)
Q Consensus 216 G~sPl~A~ 223 (267)
+..++.-.
T Consensus 299 ~~~~~~~~ 306 (910)
T TIGR00833 299 RLPSFKTL 306 (910)
T ss_pred cChHHHHH
Confidence 44555443
No 120
>PRK09577 multidrug efflux protein; Reviewed
Probab=36.75 E-value=3.4e+02 Score=29.87 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHH
Q 024490 171 GATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTG 211 (267)
Q Consensus 171 GAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtG 211 (267)
|.+++||..+ |.+.-.-|.+.++-+.-.+++|-++.+
T Consensus 423 G~~~~~A~~~----a~~~~~~~i~~~tlt~~~~flPl~~~~ 459 (1032)
T PRK09577 423 GLSPYDATVK----AMKQISGAIVGITVVLTSVFVPMAFFG 459 (1032)
T ss_pred CCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7788887655 445556676777777888999988853
No 121
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=35.99 E-value=2.2e+02 Score=25.94 Aligned_cols=80 Identities=15% Similarity=0.276 Sum_probs=55.9
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHH------HHHHHhhcccccccchhheeech-HH
Q 024490 136 GMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVK------RSLVIALSPVLDNAKTVGLISLP-GA 208 (267)
Q Consensus 136 GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r------~Ai~~al~P~i~~m~~vGlVslP-Gm 208 (267)
-.++|-+-.+-+.-+=|.++.+|+|..++-.....|..-.-.....+- +.+..++.|.- ||.| +|
T Consensus 62 ~~lLgPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pkS--------vTtpiAm 133 (226)
T TIGR00659 62 NDLLGPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPKS--------VTTPIAM 133 (226)
T ss_pred HHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhHH--------hhHHHHH
Confidence 478888999999999999999999999887766666554444333333 33344555542 4555 45
Q ss_pred HHHHHHcCCCHHHHH
Q 024490 209 MTGMIMGGASPLEAI 223 (267)
Q Consensus 209 MtGqILgG~sPl~A~ 223 (267)
=..+-+||.+.+.|+
T Consensus 134 ~vs~~iGG~~sLta~ 148 (226)
T TIGR00659 134 HVSEMIGGIPAVTAV 148 (226)
T ss_pred HHHHHhCChHHHHHH
Confidence 578899998888876
No 122
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=35.93 E-value=4.5e+02 Score=28.94 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHH--H
Q 024490 171 GATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQ---IVVMNMLIGASTVSSIMS--T 245 (267)
Q Consensus 171 GAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQ---i~Im~~i~aa~~ls~~i~--~ 245 (267)
|-+.+||+ .+|.+.-+-|.+=+.-|.-+..+|=++.- |.. +--+| +.++..++.|+.+|-++. +
T Consensus 955 G~~~~~Ai----~~a~~~RlRPIlmTtltti~gllPla~~~----g~g---~~~~~plai~vigGL~~st~ltL~vvP~l 1023 (1044)
T TIGR00915 955 GKSIVEAA----LEAARMRLRPILMTSLAFILGVVPLAIST----GAG---SGSQHAIGTGVFGGMVTATVLAIFFVPLF 1023 (1044)
T ss_pred CCCHHHHH----HHHHHhhhchHHHHHHHHHHHHHHHHHhc----CCC---hHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777776 46667788888888888888999987631 211 11122 456677777776666653 3
Q ss_pred HhhhhhccCcccc
Q 024490 246 YLCWPAFFTKAYQ 258 (267)
Q Consensus 246 ~l~~r~~F~~~~q 258 (267)
|...++.+++..|
T Consensus 1024 y~~~~~~~~~~~~ 1036 (1044)
T TIGR00915 1024 YVVVRRLFKRKST 1036 (1044)
T ss_pred HHHHHHHhCcccC
Confidence 3333444444333
No 123
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=35.62 E-value=2.9e+02 Score=30.46 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024490 171 GATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCW 249 (267)
Q Consensus 171 GAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~ 249 (267)
|-+++||. .+|.+.-+-|.+-+.-|.-+..+|=++. .|..-.-=.-.=++++..++.|+.+|.++.=.+.+
T Consensus 950 G~~~~eAi----~~a~~~R~rPIlmTtltti~gllPlal~----~G~g~e~~~pla~~ii~GL~~St~ltL~vvP~ly~ 1020 (1040)
T PRK10503 950 GMSPRDAI----YQACLLRFRPILMTTLAALLGALPLMLS----TGVGAELRRPLGICMVGGLIVSQVLTLFTTPVIYL 1020 (1040)
T ss_pred CCCHHHHH----HHHHhhhhhhHHHHHHHHHHHHHHHHHh----cCCChHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888877 4566667779999999999999998763 12211000011145677777777777766544443
No 124
>PRK15111 antimicrobial peptide ABC transporter permease SapC; Provisional
Probab=34.92 E-value=3.7e+02 Score=24.81 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc-----------cccccchhhee-echHHHHHH
Q 024490 147 GVTMKRLRDDIK--IQLNLVETALALGATPRQATKQQVKRSLVIALSP-----------VLDNAKTVGLI-SLPGAMTGM 212 (267)
Q Consensus 147 slal~r~~~~l~--~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P-----------~i~~m~~vGlV-slPGmMtGq 212 (267)
..-.+..+++.+ .+++-+|++.++|+++++-....+-..+...++- ...++.-.|+. ..|---+|.
T Consensus 171 p~~~r~vr~~v~~~~~~~yveaAr~~Gas~~~Ii~~~iLP~~~p~il~~~~~~~~~ai~~~a~LsflGlG~~~~~~~wG~ 250 (296)
T PRK15111 171 PRMVRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGA 250 (296)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHcCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHH
Confidence 333455566664 3566789999999999988765444433322222 12334445553 235567777
Q ss_pred HHc
Q 024490 213 IMG 215 (267)
Q Consensus 213 ILg 215 (267)
+++
T Consensus 251 ml~ 253 (296)
T PRK15111 251 MLG 253 (296)
T ss_pred HHH
Confidence 776
No 125
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=34.91 E-value=87 Score=29.37 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=26.4
Q ss_pred cchhhhhhHHhhhhHHHHHHHH-----------HHHHHHHHHhHHHHHHH
Q 024490 129 RYIIPVAGMMVGNAMTVTGVTM-----------KRLRDDIKIQLNLVETA 167 (267)
Q Consensus 129 ry~IPi~GMllGNsm~a~slal-----------~r~~~~l~~~~~~ie~~ 167 (267)
-++||..|-..|=+..+..|++ +|+.+|.+++++..|..
T Consensus 67 ~W~~P~v~~~~G~~~v~liLgl~ig~p~~krkek~~iee~e~~~q~~e~~ 116 (279)
T PF07271_consen 67 SWFIPVVGGSAGLLAVALILGLAIGIPIYKRKEKRMIEEKEEHEQLAEQL 116 (279)
T ss_pred cceeeeccchhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4688888877777777766665 46667766666655543
No 126
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=34.18 E-value=6.1e+02 Score=27.12 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHh
Q 024490 103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQ 160 (267)
Q Consensus 103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~ 160 (267)
..+++.++.....+++.+.| .|+++- -.+++++++|=.+-=..+=.+||++|.+++
T Consensus 598 ~iipi~~~v~~~~~~M~l~g-I~~~~~-ta~v~ai~lGiGvDYsIh~~ery~eer~~~ 653 (727)
T COG1033 598 PLIPIAIVVGWNFGLMGLLG-IPLTPA-TATLGAIILGIGVDYSIHITERYREERKKG 653 (727)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CchhHH-HHHHHHHhhhccchhhhHHHHHHHHHHhcC
Confidence 45567777766667777777 677765 467899999988888888899999998875
No 127
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=33.43 E-value=1.2e+02 Score=33.35 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024490 171 GATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLCW 249 (267)
Q Consensus 171 GAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~~ 249 (267)
|.+++||.. ++.+.-..|.+.++.+...+.+|=++.+.+. .++... .=+.+.+++++|-.++.++.=.++.
T Consensus 426 g~~~~~aa~----~~~~~~~~~vl~~tltti~~f~Pl~~~~g~~--G~~~~~--~~~~v~~~l~~S~~~al~~~P~l~~ 496 (1040)
T PRK10503 426 GEKPLAAAL----KGAGEIGFTIISLTFSLIAVLIPLLFMGDIV--GRLFRE--FAVTLAVAILISAVVSLTLTPMMCA 496 (1040)
T ss_pred CCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhccccH--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666643 4555567788888889999999966542210 122222 2234555556555555555444444
No 128
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=32.91 E-value=4.2e+02 Score=29.17 Aligned_cols=68 Identities=22% Similarity=0.191 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024490 171 GATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTY 246 (267)
Q Consensus 171 GAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~ 246 (267)
|.+.+||. .+|-+.-+-|.+-++-|+.+..+|=+.. . |..++.. .-.=++++..++.|+.+|.++.=.
T Consensus 954 G~~~~~Ai----~~A~~~RlRPIlmTtltti~gllPlal~-~--g~g~~~~-~pla~~ii~GL~~St~ltL~vvP~ 1021 (1037)
T PRK10555 954 GHDLFEAT----LHASRQRLRPILMTSLAFIFGVLPMATS-T--GAGSGSQ-HAVGTGVMGGMISATILAIFFVPL 1021 (1037)
T ss_pred CCCHHHHH----HHHHHhhhhhHHHHHHHHHHHHHHHHHh-c--CCChHHh-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 56777775 5666778889999999999999997752 1 1111110 011145677777777777666433
No 129
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=32.63 E-value=89 Score=29.70 Aligned_cols=80 Identities=29% Similarity=0.392 Sum_probs=65.1
Q ss_pred chhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHH
Q 024490 130 YIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAM 209 (267)
Q Consensus 130 y~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmM 209 (267)
-..|+..+++|+--+-.-+.=|.|.+|++++ -+-++.|=|-|.++-. -+.-.|.||++.+. -.|+.+
T Consensus 227 ~tLPv~a~v~g~FAt~TlLtKNSFldEi~Kq--YVvTARAKGlserrvl---y~HVFRNAMLlvia--------GfP~af 293 (364)
T COG4174 227 ITLPVLALVLGGFATLTLLTKNSFLDEIRKQ--YVVTARAKGLSERRVL---YKHVFRNAMLLVIA--------GFPAAF 293 (364)
T ss_pred HHHHHHHHHHhhHHHHHHHhhhhHHHHHhhh--eeeehhhcCCchhhhh---HHHHhhhhHHHHhc--------CCcHHH
Confidence 4589999999999999999999999999854 4778899999988654 34556678888876 469999
Q ss_pred HHHHHcCCCHHHH
Q 024490 210 TGMIMGGASPLEA 222 (267)
Q Consensus 210 tGqILgG~sPl~A 222 (267)
.++-..|+--+|-
T Consensus 294 is~FFTgSLLIE~ 306 (364)
T COG4174 294 ISMFFTGSLLIEV 306 (364)
T ss_pred HHHHHhhhHHHHH
Confidence 9999988765553
No 130
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=30.85 E-value=4.5e+02 Score=24.57 Aligned_cols=58 Identities=10% Similarity=0.173 Sum_probs=33.9
Q ss_pred HHHHhhcCCchhHH---------HHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Q 024490 32 LSFLQKLGIEGEMI---------YSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTA 89 (267)
Q Consensus 32 is~~~~lgl~r~l~---------ia~~R~~vQL~~vG~vL~~if~~~~~~~~~l~~l~M~~~As~~a 89 (267)
+.++.|.+.+++.+ -|++|.+.|.-++-.=..++|-.+..++....+.+-..+.+...
T Consensus 42 ll~~l~i~id~~f~~al~P~m~~G~~lRvleD~g~~~~p~~~L~iTP~IYf~vf~~~~~~l~vs~~l 108 (273)
T PF01889_consen 42 LLKRLRIKIDERFVLALIPFMLFGGALRVLEDAGAIPPPLSYLFITPGIYFLVFFIAIAALLVSVKL 108 (273)
T ss_pred HHHHcCCCCchhhhhhhhhHHHHHHHHHhheecccCCCcchhheeCcHHHHHHHHHHHHHHHHHHHH
Confidence 45556777788754 46788888854433337788876555555544443333334333
No 131
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=30.80 E-value=2e+02 Score=29.84 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Q 024490 150 MKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIA 189 (267)
Q Consensus 150 l~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~a 189 (267)
.+-+.....+|++|+-.+.++||++++-.+.++.++.--+
T Consensus 290 ~n~~~~~~~~R~~ei~i~kalGa~~~~i~~~~l~E~~~l~ 329 (803)
T TIGR03434 290 ANLLLARAAARQREIAVRLALGAGRGRLVRQLLTESLLLA 329 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3567778889999999999999999999999999987543
No 132
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=30.70 E-value=1.8e+02 Score=27.56 Aligned_cols=93 Identities=16% Similarity=0.345 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHH
Q 024490 105 ASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKR 184 (267)
Q Consensus 105 ~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~ 184 (267)
++.+.=.++++.++.+.| .+++...+--+. +++|-|+|-..+-.||.+++.|..+. +...+.++.
T Consensus 165 ~al~hDvii~~g~~slfg-iE~~l~~IAAlL-tiIGYSvNDtIVvfDRIREn~r~~~~-------------~~~~~iin~ 229 (305)
T COG0341 165 LALLHDVIITLGFFSLFG-IEFNLATIAALL-TIIGYSVNDTIVVFDRIRENLRKYRR-------------ETLREIINT 229 (305)
T ss_pred HHHHHHHHHHHHHHHHhh-eeecHHHHHHHH-HHeeeccCCeEEEEhHHHHHHhhhcc-------------CCHHHHHHH
Confidence 344444445555555555 345555444443 78999999999999999999875543 233377788
Q ss_pred HHHHhhcccccccchhheeechHHHHHHHHcC
Q 024490 185 SLVIALSPVLDNAKTVGLISLPGAMTGMIMGG 216 (267)
Q Consensus 185 Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG 216 (267)
|+..-+.-+++.-.+.=++ ...--+.||
T Consensus 230 si~qTlsRti~Ts~ttll~----~~~l~~fgg 257 (305)
T COG0341 230 SINQTLTRTINTSVTTLLV----VVALLLFGG 257 (305)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHcCc
Confidence 8888888887755444433 333445566
No 133
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=30.38 E-value=2.5e+02 Score=29.89 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC-CCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHH
Q 024490 103 AGASILAGTAVTMLMLVVLNVFP-FTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQ 181 (267)
Q Consensus 103 ~~~si~~~~~~~l~~~~~~~~~~-~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~ 181 (267)
..+..++|...++..+-+.| .| .......|. +++|=...=...-.|||.+|.+++ .+++||.+.-
T Consensus 226 pL~~~l~sv~~tlG~m~llG-~plt~~s~~~~~--llIgiGidy~vh~~nr~~ee~~~~-----------~~~~eAv~~a 291 (727)
T COG1033 226 PLIIVLVSVLWTLGAMGLLG-IPLTITTSAVPP--LLIGIGIDYGVHFHNRYEEERRKG-----------RTVEEAVVEA 291 (727)
T ss_pred hHHHHHHHHHHHHHHHHHhC-CCchhHHHHHHH--HHhhhhhhHHHHHHHHHHHHHhcC-----------CCHHHHHHHH
Confidence 34445566666666666666 44 233333333 344433333444567777776655 4566666555
Q ss_pred HHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHH
Q 024490 182 VKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLE 221 (267)
Q Consensus 182 ~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~ 221 (267)
+|+ .--|.+-.+-|..+ |. .-....+..++.
T Consensus 292 i~~----~g~avl~a~lTT~~----GF-~Sl~~s~i~~i~ 322 (727)
T COG1033 292 IKH----TGPAVLIAALTTAA----GF-LSLLTSSIPAIK 322 (727)
T ss_pred HHh----hccHHHHHHHHHHH----HH-HHHHHcccHHHH
Confidence 554 44444444433332 22 334555555543
No 134
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=30.20 E-value=5.4e+02 Score=28.38 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024490 171 GATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGA-SPLEAIQLQIVVMNMLIGASTVSSIMS 244 (267)
Q Consensus 171 GAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~-sPl~A~~yQi~Im~~i~aa~~ls~~i~ 244 (267)
|-+++||+ .+|.+.-+-|.+-+.-|+.+..+|=++. .|. ++... -.=++++..++.|+.+|-++.
T Consensus 957 G~~~~~Ai----~~a~~~R~rPIlmTtlTti~gllPl~l~----~G~g~~~~~-plai~ii~GL~~St~ltL~~v 1022 (1049)
T PRK15127 957 GKGLIEAT----LEAVRMRLRPILMTSLAFILGVMPLVIS----SGAGSGAQN-AVGTGVMGGMVTATVLAIFFV 1022 (1049)
T ss_pred CCCHHHHH----HHHHHHhhhhHHHHHHHHHHHHHHHHhc----CCCCHHHhc-CchhhhhHHHHHHHHHHHHHH
Confidence 55666665 5666778889999999999999998763 122 11111 022567778888877777664
No 135
>PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional
Probab=29.86 E-value=4.3e+02 Score=24.06 Aligned_cols=30 Identities=30% Similarity=0.201 Sum_probs=21.9
Q ss_pred hHHHHHHHHHCCCCHHHHHHH----HHHHHHHHh
Q 024490 160 QLNLVETALALGATPRQATKQ----QVKRSLVIA 189 (267)
Q Consensus 160 ~~~~ie~~LalGAt~~eA~~~----~~r~Ai~~a 189 (267)
+++.+|++..+||+++|.... ..|.++-++
T Consensus 170 p~~l~EAA~idGAs~~~~f~~V~lPl~~p~i~~~ 203 (281)
T PRK10973 170 PDELVEAARIDGASPMRFFWDIVLPLSKTNLAAL 203 (281)
T ss_pred CHHHHHHHHHcCCCcchhhhhhhhhccHHHHHHH
Confidence 467789999999999987665 445544443
No 136
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=29.34 E-value=1.8e+02 Score=19.84 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=22.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhcC
Q 024490 57 VIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAK 94 (267)
Q Consensus 57 ~vG~vL~~if~~~~~~~~~l~~l~M~~~As~~a~~R~~ 94 (267)
.+|+.+.--|+. +||+.+..+++=+..+-++..|+.|
T Consensus 19 ~~G~~lD~~~~t-~p~~~~~g~llG~~~g~~~~~~~~k 55 (55)
T PF09527_consen 19 FLGYWLDKWFGT-SPWFTLIGLLLGIAAGFYNVYRLVK 55 (55)
T ss_pred HHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456677777765 5676666665555556666666543
No 137
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=27.77 E-value=65 Score=34.17 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=28.9
Q ss_pred hhhHHhhh---------hHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 024490 134 VAGMMVGN---------AMTVTGVTMKRLRDDIKIQLNLVETAL 168 (267)
Q Consensus 134 i~GMllGN---------sm~a~slal~r~~~~l~~~~~~ie~~L 168 (267)
+.|.++|. +|+++..+..+..+|+|+|-+|++..+
T Consensus 544 l~GlliG~mlpflFsal~m~AVg~aA~~mVeEVRRQFreipGi~ 587 (730)
T PLN02277 544 FVGGLLGSMLIFLFSAWACAAVGRTAQEVVNEVRRQFAERPGIM 587 (730)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 45666665 789999999999999999999886544
No 138
>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=27.53 E-value=76 Score=24.79 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=26.6
Q ss_pred HHHHhHHHHHHHHHCCCCHHHHHHHHHHHH
Q 024490 156 DIKIQLNLVETALALGATPRQATKQQVKRS 185 (267)
Q Consensus 156 ~l~~~~~~ie~~LalGAt~~eA~~~~~r~A 185 (267)
+++-+.+.+.+++..||.|.|-++.+++++
T Consensus 48 ~v~l~~eri~~Wl~~GAqpSdtV~~ll~~~ 77 (87)
T COG0228 48 RVKLDEERILYWLSQGAQPSDTVRRLLKKA 77 (87)
T ss_pred eEEEcHHHHHHHHHcCCcccHHHHHHHHHh
Confidence 456677889999999999999999999985
No 139
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=26.93 E-value=5.1e+02 Score=23.94 Aligned_cols=103 Identities=10% Similarity=0.128 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHHHHHHHHHHHHHhcc-C-CC
Q 024490 49 VRAFLQLSVIGFVLQFIFSQDNRGWIILAYLFMVIVAGYTAGQRAKHVPRGKYVAGASILAGTAVTMLMLVVLNV-F-PF 126 (267)
Q Consensus 49 ~R~~vQL~~vG~vL~~if~~~~~~~~~l~~l~M~~~As~~a~~R~~~~~~~~~~~~~si~~~~~~~l~~~~~~~~-~-~~ 126 (267)
+=+.+-.....-+++|+++. .+..+..+++-++..+.....|+.++...+.+ .....|..+...+...... . ..
T Consensus 62 ~G~~~gi~~~s~~i~~ll~~-yp~~t~~fF~GLIlgSip~l~k~~~~~~~~~~---~~~~~g~~i~~~~~~~~~~~~~~~ 137 (257)
T PF04018_consen 62 IGILIGILLFSKVISYLLEN-YPIPTYSFFFGLILGSIPFLYKEIKKFSPKSI---IFFLLGAIIALLLSFLSSATQSSL 137 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH---HHHHHHHHHHHHHHHccccchhcc
Confidence 33556667778889999974 44555555555665666666677554332222 2333344433333332222 1 11
Q ss_pred C--ccchhhhhhHHhhhhHHHHHHHHHHHHH
Q 024490 127 T--PRYIIPVAGMMVGNAMTVTGVTMKRLRD 155 (267)
Q Consensus 127 ~--~ry~IPi~GMllGNsm~a~slal~r~~~ 155 (267)
+ .-..+-.+|++.+.+|.-=.++.+-..-
T Consensus 138 ~~~~~~~lf~~G~ia~~AMIlPGiSGS~iLl 168 (257)
T PF04018_consen 138 SNPSYLYLFLAGAIAACAMILPGISGSFILL 168 (257)
T ss_pred CcchHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 1 1225678888888888766555555443
No 140
>PRK14522 rpsP 30S ribosomal protein S16; Provisional
Probab=26.53 E-value=67 Score=26.37 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=27.2
Q ss_pred HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHH
Q 024490 156 DIKIQLNLVETALALGATPRQATKQQVKRSL 186 (267)
Q Consensus 156 ~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai 186 (267)
.++-+.+.++++|+.||-|.|-+..+++++-
T Consensus 47 ~v~Ln~eRi~yWL~~GAqPS~tV~~LLkk~~ 77 (116)
T PRK14522 47 NYQLKSERIFYWLNQGAELTEKAGALVKQGA 77 (116)
T ss_pred ceEECHHHHHHHHHCCCccCHHHHHHHHhhh
Confidence 4667889999999999999999999998753
No 141
>PRK14524 rpsP 30S ribosomal protein S16; Provisional
Probab=26.50 E-value=64 Score=25.45 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=26.2
Q ss_pred HHHHhHHHHHHHHHCCCCHHHHHHHHHHHH
Q 024490 156 DIKIQLNLVETALALGATPRQATKQQVKRS 185 (267)
Q Consensus 156 ~l~~~~~~ie~~LalGAt~~eA~~~~~r~A 185 (267)
+++-+.++++++|+.||-|.|.+..+++++
T Consensus 47 ~i~l~~eri~~Wl~~GAqpT~tV~~Llkk~ 76 (94)
T PRK14524 47 EIKVDVERAVEWILKGAQPSDTVRDILRKF 76 (94)
T ss_pred eEEEcHHHHHHHHHcCCccCHHHHHHHHHc
Confidence 456677899999999999999999999873
No 142
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=25.46 E-value=3.5e+02 Score=28.68 Aligned_cols=68 Identities=16% Similarity=0.299 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCH--HHHHHHHHHHHHHHhhcccccccchhheeechHHHHHHHHc
Q 024490 141 NAMTVTGVTMKRLRDDIKIQLNLVETALALGATP--RQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMG 215 (267)
Q Consensus 141 Nsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~--~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILg 215 (267)
-+|.++..+..+..+|+|+|=+|+...+.==+.| .+.+.-..|.|+|.-+.|.+=.. .-| +.+|.+++
T Consensus 528 ~~m~aVg~aA~~mV~EvRrQFre~pgi~eg~~~pdy~~cV~I~T~~alkemi~P~ll~v------~~P-i~vg~~~g 597 (682)
T PF03030_consen 528 LTMKAVGRAAGKMVEEVRRQFREIPGIMEGKAKPDYARCVDISTRAALKEMILPGLLAV------LAP-IVVGFLLG 597 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSS---HHHHHHHHHHHHHHHTHHHHHHHH------HHH-HHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHHHHHHHhhhhHHHH------HHH-HHHHHHHh
Confidence 4689999999999999999888766544322222 22344445566666666654321 122 55666666
No 143
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=24.36 E-value=3.4e+02 Score=24.77 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=23.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 024490 39 GIEGEMIYSIVRAFLQLSVIGFVLQFIFS 67 (267)
Q Consensus 39 gl~r~l~ia~~R~~vQL~~vG~vL~~if~ 67 (267)
.-.+.+.|..+=.++=-.++++++.++|+
T Consensus 22 k~dp~l~~~ml~a~l~~~~v~v~ig~l~~ 50 (224)
T PF13829_consen 22 KEDPKLPWLMLGAFLGPIAVFVLIGLLFG 50 (224)
T ss_pred HHCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35566777777788888899999999996
No 144
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=24.29 E-value=7e+02 Score=24.63 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHHHhhcccccccchhheeechHHHHH
Q 024490 173 TPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMTG 211 (267)
Q Consensus 173 t~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtG 211 (267)
++++|. +++.+.+..|.+++.-|.-+..+|=++.|
T Consensus 346 ~~~~ai----~~g~~~a~~~Il~t~lTTiia~lpL~~~g 380 (417)
T PRK08343 346 PSRKVF----LSRIKRAFFIIFAAAATTIAAMSPLAVMG 380 (417)
T ss_pred cHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555 56667777889999999999999977654
No 145
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=23.24 E-value=8.3e+02 Score=25.10 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHH
Q 024490 103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQV 182 (267)
Q Consensus 103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~ 182 (267)
..+++.++...++.++.+.| .|++.- -+.+.-+++|=+..-...=++||+++.+ -|.+++||.+.-+
T Consensus 223 ~l~~~~~~~~~~~g~~~~~g-~~l~~~-~~~~~~l~lgi~vd~~ihl~~r~~~~~~-----------~g~~~~~ai~~a~ 289 (719)
T TIGR00921 223 PLVIILFGVAWVLGIMGWLG-IPLYAT-TLLAVPMLIGVGIDYGIQTLNRYEEERD-----------IGRAKGEAIVTAV 289 (719)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCccHH-HHHHHHHHHhhhhhhHHHHHHHHHHHHH-----------cCCCHHHHHHHHH
Confidence 34455555555555555555 345532 2334445566655555566677776643 2667777765555
Q ss_pred HHHHHHhhcccccccchhhee
Q 024490 183 KRSLVIALSPVLDNAKTVGLI 203 (267)
Q Consensus 183 r~Ai~~al~P~i~~m~~vGlV 203 (267)
|+ .--|.+-+.-+..+.
T Consensus 290 ~~----~g~~i~~t~~t~~~g 306 (719)
T TIGR00921 290 RR----TGRAVLIALLTTSAG 306 (719)
T ss_pred Hh----ccHHHHHHHHHHHHH
Confidence 54 444444443333333
No 146
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=23.15 E-value=4.4e+02 Score=21.88 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhccCC
Q 024490 55 LSVIGFVLQFIFSQDN 70 (267)
Q Consensus 55 L~~vG~vL~~if~~~~ 70 (267)
+...|..++..++..+
T Consensus 11 l~~~g~l~~~~~~g~~ 26 (140)
T PF04306_consen 11 LIWLGILLYAFFTGFS 26 (140)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4456777777666554
No 147
>PF11630 DUF3254: Protein of unknown function (DUF3254); InterPro: IPR024509 Anti-lipopolysaccharide factor binds to bacterial LPS and may specifically inhibit the LPS-mediated activation of the hemolymph coagulation. It has a strong antibacterial effect, especially on the growth of Gram-negative bacteria [,]. This entry also includes the antibacterial protein Scygonadin, which has antibacterial activity against the Gram-positive bacterium Micrococcus luteus [].; PDB: 2JOB_A.
Probab=22.62 E-value=79 Score=25.30 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhc
Q 024490 175 RQATKQQVKRSLVIALS 191 (267)
Q Consensus 175 ~eA~~~~~r~Ai~~al~ 191 (267)
++|+++|+|+|+++.++
T Consensus 74 ~~a~rDFv~kA~~~gLi 90 (100)
T PF11630_consen 74 RKATRDFVRKAFQAGLI 90 (100)
T ss_dssp HHHHHHHHHHHHHHT-S
T ss_pred hHHHHHHHHHHHHcCCc
Confidence 57999999999999886
No 148
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=21.20 E-value=4.1e+02 Score=29.19 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=38.3
Q ss_pred hhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccccchhheeechHHHH
Q 024490 131 IIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGAMT 210 (267)
Q Consensus 131 ~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGmMt 210 (267)
+|-+.|+++-|++ +=+|+++...+ -|.+++||+. +|.+.-+-|.+-++-|+-+..+|=++.
T Consensus 938 ~i~l~GivV~naI----vlv~~~~~~~~-----------~g~~~~~Ai~----~a~~~r~rpIl~ttltti~g~lPl~~~ 998 (1051)
T TIGR00914 938 FIALSGVAVLNGL----VMISFIRKLLE-----------EGPSLDEAVY----EGALTRVRPVLMTALVASLGFVPMAIA 998 (1051)
T ss_pred HHHHHHHHHhhhh----HHHHHHHHHHH-----------cCCCHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHhc
Confidence 3444566666665 34455443321 2667777774 455556678888888888888997663
No 149
>PRK00040 rpsP 30S ribosomal protein S16; Reviewed
Probab=21.01 E-value=70 Score=24.14 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=21.2
Q ss_pred HHHHhHHHHHHHHHCCCCHHHHHHHH
Q 024490 156 DIKIQLNLVETALALGATPRQATKQQ 181 (267)
Q Consensus 156 ~l~~~~~~ie~~LalGAt~~eA~~~~ 181 (267)
.++-+.++++++|+.||-|.|.+..+
T Consensus 49 ~i~ln~eri~~Wl~~GAqpt~~V~~L 74 (75)
T PRK00040 49 EVKLDEERVLYWLGQGAQPTDTVRRL 74 (75)
T ss_pred eEEEcHHHHHHHHHCCCccCHHHHHh
Confidence 45567889999999999998877654
No 150
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=20.89 E-value=6.6e+02 Score=23.09 Aligned_cols=86 Identities=14% Similarity=0.078 Sum_probs=48.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHH-HHHH
Q 024490 7 EWLLDFLKGMIKPLAATAVVLLAVLLSFLQKLG--IEGEMIYSIVRAFLQLSVIGFVLQFIFSQDNRGWIILAYL-FMVI 83 (267)
Q Consensus 7 ~~~~~~~~g~~~~~~a~~lv~~~~~is~~~~lg--l~r~l~ia~~R~~vQL~~vG~vL~~if~~~~~~~~~l~~l-~M~~ 83 (267)
++....+..+-+...-..++.+...+.. .+.. ..+-......|.+++-.+. +.+..+|+.|..+.....+. .|-.
T Consensus 203 ~~l~~~l~~lg~~~~plaLl~lG~~l~~-~~~~~~~~~~~~~~~~klil~P~i~-~~~~~~~~l~~~~~~~~vl~aa~P~ 280 (321)
T TIGR00946 203 GLILKSISILSGATTPMALFSLGLALSP-RKIKLGVRDAILALIVRFLVQPAVM-AGISKLIGLRGLELSVAILQAALPG 280 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCh-hhhccChHHHHHHHHHHHHHHHHHH-HHHHHHhCCChHHHHHHHHHHcCCh
Confidence 3445555444444444455555544432 3332 2344555678999988877 66667888888776666554 4543
Q ss_pred HHH-HHHhhhcC
Q 024490 84 VAG-YTAGQRAK 94 (267)
Q Consensus 84 ~As-~~a~~R~~ 94 (267)
... +.-.+|-+
T Consensus 281 a~~~~i~A~~y~ 292 (321)
T TIGR00946 281 GAVAAVLATEYE 292 (321)
T ss_pred hhHHHHHHHHhC
Confidence 333 33345544
No 151
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]
Probab=20.87 E-value=72 Score=30.07 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=18.3
Q ss_pred hHHHHHHHHHCCCCHHHHHHHH
Q 024490 160 QLNLVETALALGATPRQATKQQ 181 (267)
Q Consensus 160 ~~~~ie~~LalGAt~~eA~~~~ 181 (267)
.+|.+|+..|.|+|+||=....
T Consensus 183 p~eliEA~~AFG~t~~Q~L~kV 204 (290)
T COG4176 183 PAELIEAADAFGATPRQKLFKV 204 (290)
T ss_pred CHHHHHHHHHcCCCHHHHHHHh
Confidence 5677999999999999977544
No 152
>PRK15021 microcin C ABC transporter permease; Provisional
Probab=20.65 E-value=7.5e+02 Score=23.67 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=18.6
Q ss_pred hHHHHHHHHHCCCCHHHHHH-HHHHHH
Q 024490 160 QLNLVETALALGATPRQATK-QQVKRS 185 (267)
Q Consensus 160 ~~~~ie~~LalGAt~~eA~~-~~~r~A 185 (267)
++|-+|++.+.|+++++... .+++++
T Consensus 231 ~~dYV~aAra~G~s~~~Ii~rHILPn~ 257 (341)
T PRK15021 231 NFDYIRAAQALGVSDRSIILRHMLPNA 257 (341)
T ss_pred hhHHHHHHHHcCcChhHhhHHHHHHHH
Confidence 44558999999999987643 444443
No 153
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=20.61 E-value=4.7e+02 Score=30.04 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHhc----cCCCCccchhhhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHH
Q 024490 104 GASILAGTAVTMLMLVVLN----VFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATK 179 (267)
Q Consensus 104 ~~si~~~~~~~l~~~~~~~----~~~~~~ry~IPi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~ 179 (267)
.+++.-=.++++.++.+.. ..+++...+--+. -++|-|+|-..+-.||.++.++.++ ++-..
T Consensus 1264 VIALlHDVLItLGifsl~~f~lfgiEfdltfIAALL-TIIGYSINDTIVVFDRIRENlr~~~-------------~~~l~ 1329 (1403)
T PRK12911 1264 ICALIHDLLATCAVLVALHFFLQKIQIDLQAIGALM-TVLGYSLNNTLIIFDRIREDRQEKL-------------FTPMP 1329 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCeEEcHHHHHHHH-HHhhccccCeEEEeHHHHHHHhhcc-------------CCCHH
Confidence 3454444555554443332 2234544332222 3578888888899999999987542 34467
Q ss_pred HHHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024490 180 QQVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYLC 248 (267)
Q Consensus 180 ~~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i~~~l~ 248 (267)
+++.+|+..-+.-||++--|+=++-++=+ ++||. .+.- +-+..++.+..++.-|.+++.-+.
T Consensus 1330 eIIN~SINQTLsRTI~TSlTTLLallaLl----lFGG~-sI~~--FAlALLIGIIvGTYSSIFIASPLl 1391 (1403)
T PRK12911 1330 ILINDALQKTLGRTVMTTATTLSVLLILL----FVGGG-SIFN--FAFIMTIGILLGTLSSLYIAPPLL 1391 (1403)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHH----HHcch-hHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999997666655555543 56663 3442 346666777777776666666544
No 154
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional
Probab=20.27 E-value=6.3e+02 Score=22.65 Aligned_cols=60 Identities=25% Similarity=0.194 Sum_probs=44.0
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccc
Q 024490 134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPV 193 (267)
Q Consensus 134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~ 193 (267)
..|++++...........-+.+.+++ +++.+|++..+|+++++..+...-..++-++...
T Consensus 140 ~~~~il~~~~~~~p~~~~~~~~~l~~i~~~l~eaA~~~Gas~~~~~~~i~lP~l~p~i~~~ 200 (277)
T PRK10971 140 WLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAG 200 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHHHHHhhHHHHHHH
Confidence 45677777777777777777766544 5677899999999999998877666555554443
Done!