Query 024490
Match_columns 267
No_of_seqs 113 out of 533
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2onk_C Molybdate/tungstate ABC 92.2 5.5 0.00019 34.7 16.4 54 134-187 151-205 (284)
2 3tui_A D-methionine transport 91.9 3.8 0.00013 33.4 13.0 57 134-190 89-146 (217)
3 3d31_C Sulfate/molybdate ABC t 91.8 6.3 0.00021 34.6 15.5 58 133-190 162-220 (295)
4 3rlf_F Maltose transport syste 80.7 9 0.00031 37.1 10.3 79 132-210 367-448 (514)
5 3aqp_A Probable secdf protein- 62.0 66 0.0023 32.4 11.8 90 103-211 301-392 (741)
6 3aqp_A Probable secdf protein- 59.0 1.3E+02 0.0044 30.3 13.3 98 103-222 597-696 (741)
7 4dx5_A Acriflavine resistance 58.3 1E+02 0.0034 32.1 12.7 90 102-209 367-458 (1057)
8 3rlf_G Maltose transport syste 55.6 12 0.00042 32.3 4.6 57 135-192 160-217 (296)
9 2v50_A Multidrug resistance pr 45.4 2.5E+02 0.0087 29.0 13.3 90 103-210 368-459 (1052)
10 4a01_A Proton pyrophosphatase; 37.2 1.5E+02 0.0051 30.3 9.5 54 140-194 591-647 (766)
11 2v50_A Multidrug resistance pr 36.1 1.6E+02 0.0054 30.6 10.0 93 131-242 924-1018(1052)
12 4dx5_A Acriflavine resistance 32.4 4.4E+02 0.015 27.2 13.7 119 103-243 901-1021(1057)
13 2ipb_A PHON protein, class A n 26.2 26 0.0009 29.8 1.7 44 133-176 182-225 (230)
14 3r8n_P 30S ribosomal protein S 24.0 15 0.00052 27.2 -0.2 30 156-185 49-78 (82)
15 4av3_A K(+)-stimulated pyropho 21.3 29 0.00099 35.4 1.2 61 134-194 554-625 (735)
16 4fxe_A Antitoxin RELB; toxin/a 20.3 2E+02 0.0067 20.7 5.3 37 155-193 10-46 (79)
No 1
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=92.17 E-value=5.5 Score=34.71 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=40.7
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 024490 134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLV 187 (267)
Q Consensus 134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~ 187 (267)
..+.++............-+++.+++ +++.+|++...|||++|....+.=..++
T Consensus 151 ~~~~il~~~~~~~p~~~~~~~~~l~~i~~~l~eAA~~~Gas~~~~f~~I~lP~~~ 205 (284)
T 2onk_C 151 LPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSV 205 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHhhHHHHhhHHhhH
Confidence 56777777777777777777777765 5677999999999999997655444333
No 2
>3tui_A D-methionine transport system permease protein ME; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} SCOP: f.58.1.1 PDB: 3dhw_A* 3tuj_A 3tuz_A*
Probab=91.87 E-value=3.8 Score=33.37 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=41.6
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhh
Q 024490 134 VAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIAL 190 (267)
Q Consensus 134 i~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al 190 (267)
..+.++..+........+.+++++++ +++.+|++.++|+|++|....+.=..++..+
T Consensus 89 ~~~~il~~~~~~~~~~~~~~~~~l~~i~~~~~eaA~~~Gas~~~~~~~i~lP~~~p~i 146 (217)
T 3tui_A 89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGL 146 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHHhHHhhHHHH
Confidence 45667777777777777778887765 5667899999999999988655544444333
No 3
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=91.80 E-value=6.3 Score=34.55 Aligned_cols=58 Identities=19% Similarity=0.105 Sum_probs=44.2
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhh
Q 024490 133 PVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIAL 190 (267)
Q Consensus 133 Pi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al 190 (267)
...+++++...........-+++.+++ +++.+|++...||+++|....+.=..++-++
T Consensus 162 ~~~~~il~~~~~~~p~~~~~~~~~l~~i~~~l~EAA~~~Gas~~~~f~~I~lP~~~p~i 220 (295)
T 3d31_C 162 ALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYL 220 (295)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHcCCCHHHHHHHhhHHhhHHHH
Confidence 356788888888888888888888876 5677999999999999998765544444333
No 4
>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F
Probab=80.69 E-value=9 Score=37.13 Aligned_cols=79 Identities=19% Similarity=0.077 Sum_probs=54.2
Q ss_pred hhhhhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccc--cccchhheeechHH
Q 024490 132 IPVAGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSPVL--DNAKTVGLISLPGA 208 (267)
Q Consensus 132 IPi~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i--~~m~~vGlVslPGm 208 (267)
-+..++++.+..........-+.+.+++ +++.+|++..+|||+||....++=..++-++++.. .-..+.+-...|-+
T Consensus 367 ~a~~~vil~~~~~~~P~~~~i~~a~l~~Ip~~l~EAA~idGAs~~q~f~~IiLPl~~P~I~~~~il~fi~a~~~f~~~~l 446 (514)
T 3rlf_F 367 TARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQL 446 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888888865 67779999999999999987665555554444432 22233344445544
Q ss_pred HH
Q 024490 209 MT 210 (267)
Q Consensus 209 Mt 210 (267)
++
T Consensus 447 Lt 448 (514)
T 3rlf_F 447 LT 448 (514)
T ss_dssp HT
T ss_pred Hh
Confidence 44
No 5
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=61.98 E-value=66 Score=32.39 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhh--HHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHH
Q 024490 103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAG--MMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ 180 (267)
Q Consensus 103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~G--MllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~ 180 (267)
+.+++.++.+.++..+.+.|. +++ +.-++| +.+|=+...+.+-.||+++++++ |.+++||.
T Consensus 301 ~~~~l~~~i~~~~~~l~l~g~-~l~---l~~i~glil~iGi~VD~~I~i~eri~e~~~~-----------g~~~~~Ai-- 363 (741)
T 3aqp_A 301 ASLGLLYTSALILGLLSGLGA-TLT---LPGIAGLVLTLGAAVDGNVLSFERIKEELRA-----------GKKLRQAI-- 363 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-BCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------TCCHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHCC-Ccc---HHHHHHHHHHHHHHHhchhhhHHHHHHHHHc-----------CCCHHHHH--
Confidence 344555555555555555442 222 233444 34566667777778888877753 55677765
Q ss_pred HHHHHHHHhhcccccccchhheeechHHHHH
Q 024490 181 QVKRSLVIALSPVLDNAKTVGLISLPGAMTG 211 (267)
Q Consensus 181 ~~r~Ai~~al~P~i~~m~~vGlVslPGmMtG 211 (267)
+++.+.+..|.+++.-|.-++.+|-.+.+
T Consensus 364 --~~~~~~~~~~Il~s~lTt~i~f~~L~~~~ 392 (741)
T 3aqp_A 364 --PEGFRHSTLTIMDVNIAHLLAAAALYQYA 392 (741)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56667778889998888888888877654
No 6
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=58.95 E-value=1.3e+02 Score=30.28 Aligned_cols=98 Identities=21% Similarity=0.195 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhh--HHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHH
Q 024490 103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAG--MMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ 180 (267)
Q Consensus 103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~G--MllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~ 180 (267)
+.+++..+...++..+.+.+ .|++.-. +.| +++|=+++-..+=.+|++++.++++ |.+.+||.
T Consensus 597 ~l~~l~~~~~~~~g~l~l~g-~~l~~~~---i~~~l~liGisvd~~I~l~~r~re~~~~~~---------g~~~~eav-- 661 (741)
T 3aqp_A 597 SILAVAHDVAIVAGMYSLLG-LEFSIPT---IAALLTIVGYSINDSIVVSDRIRENQKLLR---------HLPYAELV-- 661 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---------SSCHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCccHHH---HHHHHHHHHHhhcceEEehHHHHHHHHhcC---------CCCHHHHH--
Confidence 34455555555555555555 3454433 334 3478888888888899988766431 34556554
Q ss_pred HHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHH
Q 024490 181 QVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEA 222 (267)
Q Consensus 181 ~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A 222 (267)
++|++...-|.+.+.-++-+..+|-+ ++|.++...
T Consensus 662 --~~a~~~~~~~il~Tsltt~~g~~~L~-----~~g~~~~~~ 696 (741)
T 3aqp_A 662 --NRSINQTLSRTVMTSLTTLLPILALL-----FLGGSVLRD 696 (741)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHCCHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccHHHHH
Confidence 56666677777776666655555544 456665443
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=58.28 E-value=1e+02 Score=32.06 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhH--HhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHH
Q 024490 102 VAGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGM--MVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATK 179 (267)
Q Consensus 102 ~~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GM--llGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~ 179 (267)
++.+++.++.+.++..+.+.|. ++ .++.+.|+ ++|=...-..+-+||++++++++ |.+++||.
T Consensus 367 i~~~~ip~~~~~~~~~l~~~g~-~l---n~~sl~gl~~~iGi~vd~aIv~~~~~~~~~~~~----------g~~~~~A~- 431 (1057)
T 4dx5_A 367 IPTIAVPVVLLGTFAVLAAFGF-SI---NTLTMFGMVLAIGLLVDDAIVVVENVERVMAEE----------GLPPKEAT- 431 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-CB---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-cH---HHHHHHHHHHHeeccccceEEeHHHHHHHHHhc----------CCCHHHHH-
Confidence 3445555555555555555442 22 34455553 34444455556667776655431 67787775
Q ss_pred HHHHHHHHHhhcccccccchhheeechHHH
Q 024490 180 QQVKRSLVIALSPVLDNAKTVGLISLPGAM 209 (267)
Q Consensus 180 ~~~r~Ai~~al~P~i~~m~~vGlVslPGmM 209 (267)
++|.+...-|.+.+.-|+.++.+|=++
T Consensus 432 ---~~a~~~~~~pi~~t~ltt~~~f~pl~~ 458 (1057)
T 4dx5_A 432 ---RKSMGQIQGALVGIAMVLSAVFVPMAF 458 (1057)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHSGGGG
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666788888888888888888665
No 8
>3rlf_G Maltose transport system permease protein MALG; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} SCOP: f.58.1.1 PDB: 3fh6_G 2r6g_G* 3puv_G* 3pux_G* 3puy_G* 3puz_G* 3pv0_G* 3puw_G*
Probab=55.62 E-value=12 Score=32.32 Aligned_cols=57 Identities=21% Similarity=0.167 Sum_probs=35.3
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc
Q 024490 135 AGMMVGNAMTVTGVTMKRLRDDIKI-QLNLVETALALGATPRQATKQQVKRSLVIALSP 192 (267)
Q Consensus 135 ~GMllGNsm~a~slal~r~~~~l~~-~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P 192 (267)
.+++++.... .........+.+++ +++.+|++..+||+++|....++=..++.++.+
T Consensus 160 ~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~eAA~~~Ga~~~~~~~~i~lP~~~p~i~~ 217 (296)
T 3rlf_G 160 GGVIFAYLGG-IALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAV 217 (296)
T ss_dssp HHHHHHHTTT-THHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHcCCCHHHHHHHHHHHhhHHHHHH
Confidence 3444443333 34445555555543 567799999999999999876555544444443
No 9
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=45.38 E-value=2.5e+02 Score=29.04 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhHH--hhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHH
Q 024490 103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGMM--VGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ 180 (267)
Q Consensus 103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GMl--lGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~ 180 (267)
+.+++.++.+.++..+.+.|. +++ ++.+.|++ +|=...-..+-+||++++.++ -|.+++||.
T Consensus 368 ~~~~ip~s~~~~~~~l~~~g~-~ln---~~s~~gl~~~iGi~vd~aI~~~~~~~~~~~~----------~g~~~~~A~-- 431 (1052)
T 2v50_A 368 PTIAVPVVLLGTFGVLAAFGF-SIN---TLTMFGMVLAIGLLVDDAIVVVENVERVMAE----------EGLSPREAA-- 431 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HCCCHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CHH---HHHHHHHHHHHHhhccceEEEehHHHHHHHh----------cCCCHHHHH--
Confidence 344555555444445544442 233 33444443 344445555666777665531 277787775
Q ss_pred HHHHHHHHhhcccccccchhheeechHHHH
Q 024490 181 QVKRSLVIALSPVLDNAKTVGLISLPGAMT 210 (267)
Q Consensus 181 ~~r~Ai~~al~P~i~~m~~vGlVslPGmMt 210 (267)
++|.+....|.+-+.-|+-++.+|=++.
T Consensus 432 --~~a~~~~~~pil~t~ltt~~~f~pl~~~ 459 (1052)
T 2v50_A 432 --RKSMGQIQGALVGIAMVLSAVFLPMAFF 459 (1052)
T ss_dssp --HHHHHTTSSTTHHHHHHHHHTTHHHHTC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778889999999999999999997764
No 10
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=37.18 E-value=1.5e+02 Score=30.31 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCC-C--HHHHHHHHHHHHHHHhhcccc
Q 024490 140 GNAMTVTGVTMKRLRDDIKIQLNLVETALALGA-T--PRQATKQQVKRSLVIALSPVL 194 (267)
Q Consensus 140 GNsm~a~slal~r~~~~l~~~~~~ie~~LalGA-t--~~eA~~~~~r~Ai~~al~P~i 194 (267)
+-+|+++..+..+.-+|+|+|=+|+...+- |. . ..+.+.-..|.|+|.=+.|.+
T Consensus 591 a~tm~AVg~AA~~mV~EVRRQFreipGIme-g~~kPDY~rcV~I~T~aAlkeMi~Pgl 647 (766)
T 4a01_A 591 AMTMKSVGSAALKMVEEVRRQFNTIPGLME-GTAKPDYATCVKISTDASIKEMIPPGA 647 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTTT-TSSCCCHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccc-CCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999888754332 22 1 223444445566666555543
No 11
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=36.07 E-value=1.6e+02 Score=30.58 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=51.7
Q ss_pred hhhhhh--HHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccccccchhheeechHH
Q 024490 131 IIPVAG--MMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPVLDNAKTVGLISLPGA 208 (267)
Q Consensus 131 ~IPi~G--MllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~i~~m~~vGlVslPGm 208 (267)
+.++.| +++|=+.+-..+=.+|+.++.+ -|.+.+||+ ++|.+...-|.+-+.-++.+..+|-+
T Consensus 924 ~~~~~g~~~l~Gi~vd~~I~lv~~~~~~~~-----------~g~~~~~Ai----~~a~~~~~rpil~t~~tt~~g~~pl~ 988 (1052)
T 2v50_A 924 VFFQVGLLTTIGLSAKNAILIVEFAKELHE-----------QGKGIVEAA----IEACRMRLRPIVMTSLAFILGVVPLA 988 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------TTCCHHHHH----HHHHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHHcCeEEEeehHHHHHH-----------cCCCHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455555 4556666666776777755322 267777775 45666666777777666777777765
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 024490 209 MTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSI 242 (267)
Q Consensus 209 MtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~ 242 (267)
+..- .|+.+..-. =+.+.+.++.+..++.+
T Consensus 989 ~~~~--~g~~~~~~~--~~~~~~Gl~~s~~~~l~ 1018 (1052)
T 2v50_A 989 ISTG--AGSGSQHAI--GTGVIGGMVTATVLAIF 1018 (1052)
T ss_dssp TCCS--TTTTHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred hcCC--CChhhhccc--HHHHHHHHHHHHHHHHH
Confidence 4221 233333221 13444455555444433
No 12
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=32.37 E-value=4.4e+02 Score=27.19 Aligned_cols=119 Identities=14% Similarity=0.148 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccchhhhhhH--HhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHH
Q 024490 103 AGASILAGTAVTMLMLVVLNVFPFTPRYIIPVAGM--MVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATKQ 180 (267)
Q Consensus 103 ~~~si~~~~~~~l~~~~~~~~~~~~~ry~IPi~GM--llGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~eA~~~ 180 (267)
+.+++..+...++..+.+.| .+++ +.++.|+ ++|=+++-..+-++|+.++.++ -|.+++||..
T Consensus 901 ~l~~i~~~~~~~~~~l~~~g-~~l~---~~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~----------~g~~~~~Ai~- 965 (1057)
T 4dx5_A 901 VMLVVPLGVIGALLAATFRG-LTND---VYFQVGLLTTIGLSAKNAILIVEFAKDLMDK----------EGKGLIEATL- 965 (1057)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-CCBC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------SCCCHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCcc---HHHHHHHHHHHHHHHcCeEEEehHHhHHHHH----------cCCCHHHHHH-
Confidence 33444444444444444444 2333 2455554 4566666667777887765332 2778877765
Q ss_pred HHHHHHHHhhcccccccchhheeechHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024490 181 QVKRSLVIALSPVLDNAKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMLIGASTVSSIM 243 (267)
Q Consensus 181 ~~r~Ai~~al~P~i~~m~~vGlVslPGmMtGqILgG~sPl~A~~yQi~Im~~i~aa~~ls~~i 243 (267)
+|.+..+-|.+-+.-|+-+..+|=++..- .|..... ..=+.+.+.++.+..++.++
T Consensus 966 ---~a~~~~~rpil~t~ltt~~g~~pl~~~~g--~g~~~~~--~~g~~~~~Gl~~s~~~tl~~ 1021 (1057)
T 4dx5_A 966 ---DAVRMRLRPILMTSLAFILGVMPLVISTG--AGSGAQN--AVGTGVMGGMVTATVLAIFF 1021 (1057)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTHHHHTCCS--TTHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHhHhHHHHHHHHHHHHHHHHHHhcC--Cchhhhc--ccHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777777777544210 0222221 12244555666655555444
No 13
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=26.19 E-value=26 Score=29.78 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=35.2
Q ss_pred hhhhHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHH
Q 024490 133 PVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQ 176 (267)
Q Consensus 133 Pi~GMllGNsm~a~slal~r~~~~l~~~~~~ie~~LalGAt~~e 176 (267)
-++|.++|.........-..|.+++.+.++|++..+.-|..+..
T Consensus 182 VlaG~~lG~~~~~~~~~~~~~~~~~~~a~~e~~~~~~~~~~~~~ 225 (230)
T 2ipb_A 182 VDAGRYVGAVEFARLQTIPAFQKSLAKVREELNDKNNLLSKEER 225 (230)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCTTTBCC----
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHccCCCCCh
Confidence 47899999998888888899999999999999988877776543
No 14
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=23.96 E-value=15 Score=27.16 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=25.7
Q ss_pred HHHHhHHHHHHHHHCCCCHHHHHHHHHHHH
Q 024490 156 DIKIQLNLVETALALGATPRQATKQQVKRS 185 (267)
Q Consensus 156 ~l~~~~~~ie~~LalGAt~~eA~~~~~r~A 185 (267)
+++-+.+.+.++|+.||-|.|.+..++++|
T Consensus 49 ~v~l~~eri~~Wl~~GAqptdtV~~Ll~~a 78 (82)
T 3r8n_P 49 GTRLDLDRIAHWVGQGATISDRVAALIKEV 78 (82)
T ss_dssp CCCCCHHHHHHHHHHTCEECHHHHHHHTTS
T ss_pred eEEEcHHHHHHHHHCCCccCHHHHHHHHhh
Confidence 355677889999999999999999998865
No 15
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=21.28 E-value=29 Score=35.36 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=29.0
Q ss_pred hhhHHhhhh---------HHHHHHHHHHHHHHHHHhHHHHHHHHHCCCC--HHHHHHHHHHHHHHHhhcccc
Q 024490 134 VAGMMVGNA---------MTVTGVTMKRLRDDIKIQLNLVETALALGAT--PRQATKQQVKRSLVIALSPVL 194 (267)
Q Consensus 134 i~GMllGNs---------m~a~slal~r~~~~l~~~~~~ie~~LalGAt--~~eA~~~~~r~Ai~~al~P~i 194 (267)
+.|+++|.. |+|++.+..+.-+|+|+|=+|+...+-==+. ..+.+.-..|.|+|.-+.|.+
T Consensus 554 lvGlliGgmlpflFsaltm~AVgrAA~~mV~EVRRQFreipGimeg~~kPdy~~cV~I~T~~AlkeMi~p~~ 625 (735)
T 4av3_A 554 IAGALLGAAITYYFSGYLISAVTKAAMKMVDEIRRQAREIPGLLEGKAKPDYNRCIEITSDNALKQMGYPAF 625 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------CHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccCCCCCChHHHHHHHHHHHHHHhHHHHH
Confidence 568888864 9999999999999999998887554421111 122333444455554444543
No 16
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=20.28 E-value=2e+02 Score=20.65 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=29.3
Q ss_pred HHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccc
Q 024490 155 DDIKIQLNLVETALALGATPRQATKQQVKRSLVIALSPV 193 (267)
Q Consensus 155 ~~l~~~~~~ie~~LalGAt~~eA~~~~~r~Ai~~al~P~ 193 (267)
++++++.+++ .=.+|-|..+|++-++|+.++..=+|-
T Consensus 10 ~~lK~~a~~v--~~~lGl~~s~Ai~~fl~~v~~~~~iPF 46 (79)
T 4fxe_A 10 DELKARSYAA--LEKMGVTPSEALRLMLEYIADNERLPF 46 (79)
T ss_dssp HHHHHHHHHH--HHHHTCCHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHHhCCCCC
Confidence 4566655544 445699999999999999999998885
Done!