Query 024491
Match_columns 267
No_of_seqs 127 out of 1015
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 09:09:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024491.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024491hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 38.7 21 0.0015 22.7 4.1 31 131-161 7-43 (52)
2 d2gena2 a.121.1.1 (A:76-193) P 35.1 60 0.0043 21.8 8.9 88 85-178 5-113 (118)
3 d2vqca1 a.4.5.78 (A:4-73) F-11 9.7 31 0.0022 22.5 0.1 27 115-142 22-48 (70)
4 d1dqga_ b.42.2.2 (A:) Mannose 6.2 57 0.0041 23.2 0.1 14 38-51 115-133 (134)
5 d1fmd1_ b.121.4.1 (1:) Aphthov 6.0 86 0.0063 25.0 1.2 12 44-55 180-191 (207)
6 d1rh5b_ f.23.28.1 (B:) Preprot 6.0 2.8E+02 0.02 17.3 3.6 28 131-158 20-47 (56)
7 d1aila_ a.16.1.1 (A:) N-termin 5.9 95 0.0069 20.2 1.2 20 14-33 31-50 (70)
8 d1oz7a_ d.169.1.1 (A:) Snake c 5.8 44 0.0032 23.0 -0.8 10 44-53 122-131 (131)
9 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 5.3 2.9E+02 0.021 20.1 3.9 32 113-147 66-97 (146)
10 d1l7va_ f.22.1.1 (A:) ABC tran 4.8 2.7E+02 0.02 22.7 3.9 25 102-126 275-299 (324)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=38.71 E-value=21 Score=22.68 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=23.2
Q ss_pred CCcHHHHHHHHHHHHhhhhhhHhHH------HHHHhh
Q 024491 131 SIDSIRTLRMAVYGMLILGPSQHYW------FNFLSR 161 (267)
Q Consensus 131 ~~D~~Rt~r~a~~G~~~~GP~~h~W------y~~Ldr 161 (267)
-+|++|++.......+..+-+-|+- |+|||.
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfiLLSt~rfNWleg 43 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLEG 43 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHhccCccccccC
Confidence 3799999887777777777777774 777763
No 2
>d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=35.06 E-value=60 Score=21.79 Aligned_cols=88 Identities=10% Similarity=0.017 Sum_probs=50.5
Q ss_pred cchhHHHHHHHHHhhhCChhHHHHHH-------------------HHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHH
Q 024491 85 SSKFGFVGWYLGKLESHPLTTKGISS-------------------SLIYVAADLTSQMITLPPSGSIDSIRTLRMAVYGM 145 (267)
Q Consensus 85 ~~~~~l~~~Y~~~L~~~Pl~Tk~iTs-------------------gvl~~~gDllAQ~i~~~~~~~~D~~Rt~r~a~~G~ 145 (267)
.....++..|.+....||-..+.+.. ...-.+.|++.|.++.+...+.|.. .+..+
T Consensus 5 e~lr~~v~~~~~~v~~~p~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~g~~~G~~r~~~~~-~~~~~---- 79 (118)
T d2gena2 5 ETVRLLVTSYIDWVVANPDWARFILHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFREMPDD-CFASV---- 79 (118)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCHH-HHHHH----
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCHH-HHHHH----
Confidence 34567888899999999966665432 2333466666666655433345543 22222
Q ss_pred hhhhhhHhHHHHHHhhhcC--CCchhHHHHHHHHh
Q 024491 146 LILGPSQHYWFNFLSRILP--KRDALTTLKKIFMG 178 (267)
Q Consensus 146 ~~~GP~~h~Wy~~Ldrlfp--~~~~~~vl~KVllD 178 (267)
+.||+...-..+++.-.+ .+.....+..++.|
T Consensus 80 -i~G~~~~~~~~wl~~~~~~~~e~~~e~l~~~~w~ 113 (118)
T d2gena2 80 -VIGPAHDLARQWLAGRTRVALADCRELLAQVAWD 113 (118)
T ss_dssp -HHHHHHHHHHHHHTTCCSSCGGGGHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 346666666666665433 34556666666554
No 3
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=9.74 E-value=31 Score=22.47 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=19.3
Q ss_pred HHHHHHHHhhcCCCCCCCcHHHHHHHHH
Q 024491 115 VAADLTSQMITLPPSGSIDSIRTLRMAV 142 (267)
Q Consensus 115 ~~gDllAQ~i~~~~~~~~D~~Rt~r~a~ 142 (267)
.+-|++||.-... ...++..|+++|.+
T Consensus 22 ~ledilaqfeis~-~~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISV-PSAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCH-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHheecc-chHhHHHHHHHHHH
Confidence 4679999985432 23588889998865
No 4
>d1dqga_ b.42.2.2 (A:) Mannose receptor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.19 E-value=57 Score=23.21 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=10.5
Q ss_pred hhhhhhhh-----hccCCC
Q 024491 38 TNQQWRRF-----YCSRPL 51 (267)
Q Consensus 38 ~~~~~~~~-----~~~~~~ 51 (267)
.+|||+.| .|+||.
T Consensus 115 ~~q~W~~~g~~~~~C~~~y 133 (134)
T d1dqga_ 115 LWSRWKVYGTTDDLCSRGY 133 (134)
T ss_dssp GGGBCEETTSSSBGGGGSC
T ss_pred ccccceEcCCCCCcccCCC
Confidence 47899876 688874
No 5
>d1fmd1_ b.121.4.1 (1:) Aphthovirus (Foot-and-mouth disease virus) coat proteins {FMDV (Foot-and-mouth disease virus), strain bfs, 1860 [TaxId: 12110]}
Probab=6.05 E-value=86 Score=24.97 Aligned_cols=12 Identities=42% Similarity=1.110 Sum_probs=10.0
Q ss_pred hhhccCCCCccC
Q 024491 44 RFYCSRPLSKIR 55 (267)
Q Consensus 44 ~~~~~~~~~~~~ 55 (267)
+-||-|||-++.
T Consensus 180 e~YCPRPLl~~~ 191 (207)
T d1fmd1_ 180 ELYCPRPILPIQ 191 (207)
T ss_dssp EEEEECCCCCCC
T ss_pred eeeCCCcccccC
Confidence 579999998864
No 6
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.97 E-value=2.8e+02 Score=17.27 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=22.5
Q ss_pred CCcHHHHHHHHHHHHhhhhhhHhHHHHH
Q 024491 131 SIDSIRTLRMAVYGMLILGPSQHYWFNF 158 (267)
Q Consensus 131 ~~D~~Rt~r~a~~G~~~~GP~~h~Wy~~ 158 (267)
.-++++++..+..|+++.|-+.+.-|-.
T Consensus 20 ~~Ef~~ia~v~~iG~~i~G~IGf~I~li 47 (56)
T d1rh5b_ 20 KDEYLAVAKVTALGISLLGIIGYIIHVP 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999988766543
No 7
>d1aila_ a.16.1.1 (A:) N-terminal, RNA-binding domain of nonstructural protein NS1 {Influenza A virus [TaxId: 11320]}
Probab=5.93 E-value=95 Score=20.16 Aligned_cols=20 Identities=45% Similarity=0.600 Sum_probs=17.2
Q ss_pred hHHHhhhhhhhhhhchhhhh
Q 024491 14 SFLLRLSEQQQSLHGVSSFI 33 (267)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~ 33 (267)
-||-||-..|.||.|-+|-+
T Consensus 31 PfldrlRRDqkslrGrgsTL 50 (70)
T d1aila_ 31 PFLDRLRRDQKSLRGRGSTL 50 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhhhhhccCCccc
Confidence 58999999999999987754
No 8
>d1oz7a_ d.169.1.1 (A:) Snake coagglutinin alpha chain {Saw-scaled viper (Echis carinatus), echicetin [TaxId: 40353]}
Probab=5.76 E-value=44 Score=22.97 Aligned_cols=10 Identities=30% Similarity=0.939 Sum_probs=5.5
Q ss_pred hhhccCCCCc
Q 024491 44 RFYCSRPLSK 53 (267)
Q Consensus 44 ~~~~~~~~~~ 53 (267)
.|.|.+|++|
T Consensus 122 ~fICe~~~pr 131 (131)
T d1oz7a_ 122 PFMCKYPVPR 131 (131)
T ss_dssp EEEEEECTTC
T ss_pred eEEEeEeCCC
Confidence 3555566554
No 9
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=5.29 E-value=2.9e+02 Score=20.15 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHhh
Q 024491 113 IYVAADLTSQMITLPPSGSIDSIRTLRMAVYGMLI 147 (267)
Q Consensus 113 l~~~gDllAQ~i~~~~~~~~D~~Rt~r~a~~G~~~ 147 (267)
.-.+++++.+..+. ...+|.|.+.+..||+.+
T Consensus 66 ~~~f~~V~~elF~D---G~~NWGRIVaLfaFg~~l 97 (146)
T d1k3ka_ 66 IDQLGLSMLQVSGD---GNMNWGRALAILTFGSFV 97 (146)
T ss_dssp HHHHHTHHHHHCSS---CSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHH
Confidence 33456666666543 247999999999998853
No 10
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=4.78 E-value=2.7e+02 Score=22.71 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=18.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcC
Q 024491 102 PLTTKGISSSLIYVAADLTSQMITL 126 (267)
Q Consensus 102 Pl~Tk~iTsgvl~~~gDllAQ~i~~ 126 (267)
-+...++.++++...+|++++.+..
T Consensus 275 ~lp~s~l~Ga~lll~aD~l~r~i~~ 299 (324)
T d1l7va_ 275 LLPGCALAGASALLLADIVARLALA 299 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3556677778888888888887653
Done!