Query 024492
Match_columns 267
No_of_seqs 246 out of 1455
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024492.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024492hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.1E-35 3.7E-40 234.8 9.8 105 11-116 1-105 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.8E-35 9.4E-40 234.0 9.2 103 14-117 1-103 (107)
3 3zqc_A MYB3; transcription-DNA 100.0 7.8E-35 2.7E-39 239.1 10.5 107 14-121 2-108 (131)
4 3osg_A MYB21; transcription-DN 100.0 1.5E-34 5E-39 236.2 10.1 106 8-115 5-110 (126)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 1.1E-34 3.9E-39 236.9 9.0 108 8-116 21-128 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.8E-32 6.3E-37 231.2 8.3 108 8-116 52-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.6E-31 5.4E-36 225.4 5.4 105 11-116 3-108 (159)
8 2dim_A Cell division cycle 5-l 99.9 7.5E-23 2.6E-27 150.9 2.4 67 8-75 3-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.9 2.7E-22 9.4E-27 163.4 5.4 76 40-116 1-77 (128)
10 2llk_A Cyclin-D-binding MYB-li 99.8 1.5E-19 5E-24 135.2 5.3 59 53-112 9-67 (73)
11 1ign_A Protein (RAP1); RAP1,ye 99.8 4.6E-19 1.6E-23 158.4 7.3 106 9-115 3-200 (246)
12 2din_A Cell division cycle 5-l 99.7 1.9E-18 6.4E-23 125.9 6.5 60 59-119 1-60 (66)
13 2juh_A Telomere binding protei 99.7 6.3E-19 2.1E-23 143.5 2.9 82 9-91 12-103 (121)
14 2cu7_A KIAA1915 protein; nucle 99.7 5.6E-18 1.9E-22 125.6 7.3 58 61-118 3-60 (72)
15 2d9a_A B-MYB, MYB-related prot 99.7 3.7E-18 1.3E-22 122.0 3.5 57 9-66 3-59 (60)
16 2roh_A RTBP1, telomere binding 99.7 6.7E-18 2.3E-22 137.6 5.1 79 9-88 26-114 (122)
17 2d9a_A B-MYB, MYB-related prot 99.7 1.1E-17 3.9E-22 119.5 5.6 55 62-116 3-58 (60)
18 1gvd_A MYB proto-oncogene prot 99.7 4.9E-18 1.7E-22 118.1 3.2 52 12-64 1-52 (52)
19 1guu_A C-MYB, MYB proto-oncoge 99.7 1E-17 3.4E-22 116.4 2.6 52 12-64 1-52 (52)
20 1ity_A TRF1; helix-turn-helix, 99.7 1.2E-17 4.1E-22 122.7 3.1 62 9-71 5-68 (69)
21 1guu_A C-MYB, MYB proto-oncoge 99.7 5.2E-17 1.8E-21 112.8 6.0 50 65-114 1-51 (52)
22 1gvd_A MYB proto-oncogene prot 99.7 9.5E-17 3.2E-21 111.6 6.0 50 65-114 1-51 (52)
23 2dim_A Cell division cycle 5-l 99.7 6.9E-17 2.4E-21 118.9 5.4 57 62-118 4-61 (70)
24 1ity_A TRF1; helix-turn-helix, 99.7 1.2E-16 4.3E-21 117.3 6.1 59 60-118 3-64 (69)
25 1w0t_A Telomeric repeat bindin 99.6 2.3E-16 7.8E-21 110.2 6.3 49 66-114 1-52 (53)
26 1x41_A Transcriptional adaptor 99.6 3.5E-16 1.2E-20 112.1 6.4 53 62-114 3-56 (60)
27 3sjm_A Telomeric repeat-bindin 99.6 9.6E-17 3.3E-21 116.9 2.4 55 12-66 9-64 (64)
28 2yum_A ZZZ3 protein, zinc fing 99.6 4.8E-16 1.6E-20 115.7 5.3 57 62-118 3-65 (75)
29 1x41_A Transcriptional adaptor 99.6 2E-16 7E-21 113.3 3.0 55 10-65 4-58 (60)
30 3sjm_A Telomeric repeat-bindin 99.6 9.9E-16 3.4E-20 111.5 5.9 52 65-116 9-63 (64)
31 2elk_A SPCC24B10.08C protein; 99.6 3.4E-15 1.2E-19 106.4 6.6 51 62-112 4-56 (58)
32 1w0t_A Telomeric repeat bindin 99.6 5.7E-16 1.9E-20 108.2 2.4 49 13-62 1-51 (53)
33 2din_A Cell division cycle 5-l 99.6 2.1E-16 7.2E-21 115.0 -0.0 59 8-69 3-61 (66)
34 2yum_A ZZZ3 protein, zinc fing 99.6 4.3E-16 1.5E-20 115.9 1.4 61 8-69 2-67 (75)
35 2ltp_A Nuclear receptor corepr 99.3 2.5E-16 8.4E-21 121.5 0.0 57 59-115 8-64 (89)
36 2elk_A SPCC24B10.08C protein; 99.5 1.9E-15 6.4E-20 107.7 2.8 51 11-61 6-56 (58)
37 2cqr_A RSGI RUH-043, DNAJ homo 99.5 2.6E-14 9E-19 106.7 6.3 53 62-114 13-69 (73)
38 2cu7_A KIAA1915 protein; nucle 99.5 3.6E-15 1.2E-19 110.4 1.4 58 8-67 3-60 (72)
39 2aje_A Telomere repeat-binding 99.4 2.7E-14 9.2E-19 113.5 3.1 79 8-87 7-95 (105)
40 3osg_A MYB21; transcription-DN 99.4 7.8E-14 2.7E-18 113.3 5.8 56 62-117 6-61 (126)
41 2ckx_A NGTRF1, telomere bindin 99.4 5.7E-14 1.9E-18 107.3 4.4 69 15-84 1-79 (83)
42 1gv2_A C-MYB, MYB proto-oncoge 99.4 6.8E-14 2.3E-18 109.8 5.0 53 64-116 1-54 (105)
43 2yus_A SWI/SNF-related matrix- 99.4 1.1E-13 3.9E-18 104.6 5.0 49 63-111 14-62 (79)
44 2llk_A Cyclin-D-binding MYB-li 99.4 7.4E-14 2.5E-18 104.2 3.6 62 3-68 12-73 (73)
45 3zqc_A MYB3; transcription-DNA 99.4 5.1E-14 1.7E-18 115.0 1.6 83 8-96 48-130 (131)
46 2yus_A SWI/SNF-related matrix- 99.4 1.9E-13 6.4E-18 103.4 3.9 54 6-61 10-63 (79)
47 2ckx_A NGTRF1, telomere bindin 99.4 8.6E-13 3E-17 100.7 6.6 49 68-116 1-54 (83)
48 2k9n_A MYB24; R2R3 domain, DNA 99.4 4E-13 1.4E-17 106.1 4.9 51 67-117 1-52 (107)
49 1ign_A Protein (RAP1); RAP1,ye 99.4 4.4E-13 1.5E-17 119.9 5.2 55 63-117 4-64 (246)
50 1x58_A Hypothetical protein 49 99.3 1.3E-12 4.6E-17 94.3 6.1 49 66-114 7-58 (62)
51 2juh_A Telomere binding protei 99.3 1.1E-12 3.7E-17 106.7 6.3 55 60-114 10-69 (121)
52 2cjj_A Radialis; plant develop 99.3 2.4E-12 8.3E-17 100.2 7.6 50 66-115 7-60 (93)
53 2aje_A Telomere repeat-binding 99.3 1.9E-12 6.6E-17 102.8 6.9 54 62-115 8-66 (105)
54 2ltp_A Nuclear receptor corepr 99.0 1.7E-13 5.8E-18 105.6 0.0 54 8-63 10-63 (89)
55 2cqr_A RSGI RUH-043, DNAJ homo 99.3 5.4E-13 1.8E-17 99.5 1.1 55 7-62 11-68 (73)
56 2roh_A RTBP1, telomere binding 99.3 7.3E-12 2.5E-16 101.9 6.7 54 62-115 26-84 (122)
57 3hm5_A DNA methyltransferase 1 99.1 1.7E-10 5.9E-15 89.7 7.0 66 50-119 17-87 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 4.8E-10 1.6E-14 80.4 7.0 47 66-112 11-57 (61)
59 2cqq_A RSGI RUH-037, DNAJ homo 99.0 7.6E-10 2.6E-14 82.2 6.2 50 64-114 5-58 (72)
60 2cjj_A Radialis; plant develop 99.0 1.1E-10 3.7E-15 90.9 1.2 48 13-61 7-57 (93)
61 2iw5_B Protein corest, REST co 98.8 3.2E-09 1.1E-13 94.3 6.0 49 66-114 132-180 (235)
62 1wgx_A KIAA1903 protein; MYB D 98.8 9.9E-09 3.4E-13 76.4 5.5 48 67-114 8-59 (73)
63 1x58_A Hypothetical protein 49 98.7 4.3E-09 1.5E-13 76.0 2.0 48 13-62 7-57 (62)
64 2eqr_A N-COR1, N-COR, nuclear 98.7 6.9E-09 2.4E-13 74.3 2.7 52 8-61 6-57 (61)
65 1fex_A TRF2-interacting telome 98.5 1.2E-07 4.3E-12 67.6 5.4 47 67-113 2-58 (59)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.5 3.2E-08 1.1E-12 73.4 1.7 50 11-62 5-57 (72)
67 2xag_B REST corepressor 1; ami 98.4 1.6E-07 5.6E-12 91.5 5.2 46 68-113 381-426 (482)
68 1fex_A TRF2-interacting telome 98.4 5.7E-08 1.9E-12 69.4 1.2 48 14-62 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.3 2.3E-07 7.9E-12 69.0 1.9 48 14-62 8-58 (73)
70 1ug2_A 2610100B20RIK gene prod 98.2 1.4E-06 4.9E-11 67.1 5.6 46 69-114 35-83 (95)
71 2iw5_B Protein corest, REST co 98.2 6.4E-07 2.2E-11 79.6 3.1 50 11-62 130-179 (235)
72 4eef_G F-HB80.4, designed hema 98.2 3.2E-07 1.1E-11 68.2 0.4 43 67-109 20-66 (74)
73 2lr8_A CAsp8-associated protei 97.4 3.3E-07 1.1E-11 67.1 0.0 45 69-114 16-63 (70)
74 4iej_A DNA methyltransferase 1 98.1 7.2E-06 2.5E-10 63.5 7.1 61 55-119 22-87 (93)
75 2yqk_A Arginine-glutamic acid 98.1 9.6E-06 3.3E-10 58.3 6.9 49 62-110 4-53 (63)
76 1ofc_X ISWI protein; nuclear p 97.9 2.5E-05 8.4E-10 72.3 7.9 103 15-118 111-279 (304)
77 4eef_G F-HB80.4, designed hema 97.8 4.9E-06 1.7E-10 61.8 0.6 44 14-58 20-66 (74)
78 4a69_C Nuclear receptor corepr 97.6 0.00011 3.8E-09 56.8 6.2 44 67-110 43-86 (94)
79 2yqk_A Arginine-glutamic acid 97.6 3.6E-05 1.2E-09 55.2 2.8 50 8-59 3-53 (63)
80 2crg_A Metastasis associated p 97.5 0.00022 7.5E-09 52.2 6.5 43 67-109 8-51 (70)
81 2ebi_A DNA binding protein GT- 97.4 0.00018 6.1E-09 54.1 4.6 48 67-114 4-65 (86)
82 3hm5_A DNA methyltransferase 1 97.3 8.6E-05 2.9E-09 57.5 2.0 49 12-61 28-80 (93)
83 2xag_B REST corepressor 1; ami 97.2 0.00013 4.5E-09 71.2 3.0 48 12-61 378-425 (482)
84 4a69_C Nuclear receptor corepr 96.7 0.00058 2E-08 52.7 2.0 44 14-59 43-86 (94)
85 2crg_A Metastasis associated p 96.7 0.0006 2.1E-08 49.8 2.0 45 13-59 7-52 (70)
86 2ebi_A DNA binding protein GT- 96.6 0.00025 8.5E-09 53.3 -0.7 49 13-61 3-63 (86)
87 2y9y_A Imitation switch protei 96.6 0.0054 1.9E-07 58.1 8.0 106 15-120 124-297 (374)
88 1ug2_A 2610100B20RIK gene prod 96.0 0.0028 9.6E-08 48.8 2.1 48 11-59 30-79 (95)
89 2lr8_A CAsp8-associated protei 94.4 0.0025 8.5E-08 46.6 0.0 51 10-62 10-62 (70)
90 4b4c_A Chromodomain-helicase-D 94.5 0.027 9.2E-07 48.2 4.0 39 4-42 124-162 (211)
91 4iej_A DNA methyltransferase 1 94.4 0.016 5.4E-07 44.8 2.0 49 12-61 28-80 (93)
92 1ofc_X ISWI protein; nuclear p 94.4 0.066 2.3E-06 49.3 6.4 47 67-113 110-157 (304)
93 1irz_A ARR10-B; helix-turn-hel 93.9 0.2 6.9E-06 36.0 6.9 47 66-112 6-57 (64)
94 4b4c_A Chromodomain-helicase-D 92.4 0.19 6.7E-06 42.8 5.8 49 66-114 6-59 (211)
95 2xb0_X Chromo domain-containin 88.0 0.39 1.3E-05 43.5 3.9 29 15-43 169-197 (270)
96 1irz_A ARR10-B; helix-turn-hel 82.8 0.83 2.8E-05 32.7 2.8 48 12-59 5-55 (64)
97 2xb0_X Chromo domain-containin 82.1 2.8 9.6E-05 37.8 6.7 47 67-113 3-54 (270)
98 2o8x_A Probable RNA polymerase 71.2 6.5 0.00022 26.4 4.7 41 73-114 18-58 (70)
99 1ku3_A Sigma factor SIGA; heli 66.8 8.9 0.00031 26.5 4.7 41 73-114 13-57 (73)
100 2y9y_A Imitation switch protei 63.2 13 0.00043 35.1 6.3 45 68-112 124-170 (374)
101 2p7v_B Sigma-70, RNA polymeras 62.7 8.9 0.0003 26.1 4.0 41 73-114 8-52 (68)
102 3hug_A RNA polymerase sigma fa 58.5 14 0.00048 26.6 4.7 41 73-114 40-80 (92)
103 2li6_A SWI/SNF chromatin-remod 57.6 8.2 0.00028 30.0 3.4 38 77-114 53-98 (116)
104 2lm1_A Lysine-specific demethy 53.9 20 0.00068 27.1 5.0 38 77-114 48-97 (107)
105 2jrz_A Histone demethylase jar 53.0 18 0.00062 28.1 4.7 38 77-114 44-93 (117)
106 1x3u_A Transcriptional regulat 50.8 35 0.0012 23.3 5.6 42 70-114 17-58 (79)
107 2rq5_A Protein jumonji; develo 50.0 4.9 0.00017 31.9 0.9 46 35-83 64-113 (121)
108 2eqy_A RBP2 like, jumonji, at 49.2 23 0.00079 27.7 4.8 38 77-114 46-95 (122)
109 2cxy_A BAF250B subunit, HBAF25 49.1 23 0.00079 27.7 4.8 38 77-114 55-104 (125)
110 2li6_A SWI/SNF chromatin-remod 48.3 4.7 0.00016 31.5 0.5 39 24-63 53-98 (116)
111 3cz6_A DNA-binding protein RAP 47.5 16 0.00054 30.8 3.7 24 11-34 111-142 (168)
112 3ulq_B Transcriptional regulat 47.4 39 0.0013 24.6 5.6 46 66-114 26-71 (90)
113 1kkx_A Transcription regulator 47.0 12 0.0004 29.6 2.7 38 77-114 52-97 (123)
114 1or7_A Sigma-24, RNA polymeras 46.7 31 0.0011 27.3 5.4 30 84-114 154-183 (194)
115 3c57_A Two component transcrip 46.4 34 0.0012 24.9 5.1 43 69-114 27-69 (95)
116 1je8_A Nitrate/nitrite respons 45.5 34 0.0011 24.2 4.9 43 69-114 21-63 (82)
117 1tty_A Sigma-A, RNA polymerase 45.4 32 0.0011 24.6 4.7 41 73-114 21-65 (87)
118 1fse_A GERE; helix-turn-helix 44.6 38 0.0013 22.6 4.9 44 68-114 10-53 (74)
119 3i4p_A Transcriptional regulat 44.4 20 0.00067 28.7 3.8 44 73-117 3-47 (162)
120 1c20_A DEAD ringer protein; DN 43.3 27 0.00092 27.4 4.3 38 77-114 56-106 (128)
121 2rq5_A Protein jumonji; develo 43.1 29 0.001 27.3 4.5 75 14-114 7-96 (121)
122 3e7l_A Transcriptional regulat 40.8 43 0.0015 22.6 4.6 33 73-106 19-51 (63)
123 1xsv_A Hypothetical UPF0122 pr 40.1 52 0.0018 24.9 5.5 41 73-114 28-68 (113)
124 2yqf_A Ankyrin-1; death domain 39.8 42 0.0014 25.5 4.9 35 71-106 14-48 (111)
125 2kk0_A AT-rich interactive dom 39.4 38 0.0013 27.3 4.7 38 77-114 68-118 (145)
126 1ig6_A MRF-2, modulator recogn 39.3 9 0.00031 29.2 0.9 41 24-64 37-88 (107)
127 2jpc_A SSRB; DNA binding prote 38.9 49 0.0017 21.4 4.5 38 75-114 3-40 (61)
128 2jxj_A Histone demethylase jar 38.7 16 0.00055 27.1 2.2 38 77-114 40-89 (96)
129 2dbb_A Putative HTH-type trans 38.4 54 0.0019 25.4 5.5 44 73-117 9-53 (151)
130 1ig6_A MRF-2, modulator recogn 38.1 22 0.00076 26.9 3.0 38 77-114 37-87 (107)
131 1rp3_A RNA polymerase sigma fa 37.7 50 0.0017 26.8 5.4 40 74-114 191-230 (239)
132 2k27_A Paired box protein PAX- 37.4 1.4E+02 0.0049 23.1 8.8 77 15-96 24-111 (159)
133 1ntc_A Protein (nitrogen regul 36.7 52 0.0018 23.9 4.8 34 73-107 51-84 (91)
134 3mzy_A RNA polymerase sigma-H 36.7 43 0.0015 25.4 4.5 30 84-114 122-151 (164)
135 2q1z_A RPOE, ECF SIGE; ECF sig 36.0 21 0.00071 28.2 2.6 30 84-114 149-178 (184)
136 2of5_H Leucine-rich repeat and 35.6 42 0.0014 25.9 4.3 31 75-106 13-43 (118)
137 2o71_A Death domain-containing 35.6 46 0.0016 25.8 4.5 38 65-106 17-54 (115)
138 2jrz_A Histone demethylase jar 35.0 8.4 0.00029 30.0 0.1 40 24-63 44-93 (117)
139 2of5_A Death domain-containing 34.8 44 0.0015 25.9 4.3 41 62-106 14-54 (114)
140 1k78_A Paired box protein PAX5 34.0 1.5E+02 0.0053 22.5 7.6 78 14-96 30-118 (149)
141 1c20_A DEAD ringer protein; DN 33.5 8.8 0.0003 30.3 -0.0 40 24-63 56-106 (128)
142 2rnj_A Response regulator prot 33.3 43 0.0015 23.9 3.8 42 70-114 30-71 (91)
143 2e1c_A Putative HTH-type trans 32.3 52 0.0018 26.7 4.6 44 72-116 26-70 (171)
144 1tc3_C Protein (TC3 transposas 30.7 85 0.0029 18.5 5.5 38 69-108 5-42 (51)
145 2cyy_A Putative HTH-type trans 30.5 67 0.0023 25.0 4.8 43 73-116 7-50 (151)
146 1k78_A Paired box protein PAX5 30.4 1.1E+02 0.0037 23.4 6.0 41 67-109 30-70 (149)
147 1s7o_A Hypothetical UPF0122 pr 28.9 83 0.0028 23.9 5.0 41 73-114 25-65 (113)
148 1wxp_A THO complex subunit 1; 28.8 62 0.0021 24.5 4.2 31 75-106 18-48 (110)
149 1u78_A TC3 transposase, transp 28.5 1.8E+02 0.0061 21.5 9.2 89 15-109 5-101 (141)
150 1p4w_A RCSB; solution structur 27.3 1.1E+02 0.0039 22.5 5.4 45 67-114 32-76 (99)
151 2dn0_A Zinc fingers and homeob 25.9 1.4E+02 0.0047 20.7 5.4 50 60-110 5-58 (76)
152 1umq_A Photosynthetic apparatu 25.8 71 0.0024 23.2 3.8 34 72-106 40-73 (81)
153 1qgp_A Protein (double strande 24.4 88 0.003 22.1 4.1 44 71-115 12-59 (77)
154 2cg4_A Regulatory protein ASNC 23.5 1E+02 0.0035 23.8 4.7 44 73-117 8-52 (152)
155 2kk0_A AT-rich interactive dom 23.0 37 0.0013 27.3 2.0 40 24-63 68-118 (145)
156 2p5v_A Transcriptional regulat 23.0 99 0.0034 24.2 4.6 44 73-117 10-54 (162)
157 2lfw_A PHYR sigma-like domain; 22.8 77 0.0026 24.7 3.8 41 73-114 96-136 (157)
158 1i1g_A Transcriptional regulat 22.1 1.1E+02 0.0036 23.2 4.5 42 74-116 5-47 (141)
159 1qbj_A Protein (double-strande 21.0 1.5E+02 0.0052 21.3 4.8 42 72-114 9-54 (81)
160 3clo_A Transcriptional regulat 20.8 1.1E+02 0.0038 25.9 4.8 43 69-114 197-239 (258)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.1e-35 Score=234.83 Aligned_cols=105 Identities=48% Similarity=0.909 Sum_probs=99.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCcHH
Q 024492 11 GLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWS 90 (267)
Q Consensus 11 ~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs 90 (267)
++++|+||+|||++|+.+|.+||..+|..||+.+++ |+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 478999999999999999999998899999999988 9999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492 91 AIAARLPGRTDNEIKNVWHTHLKKRL 116 (267)
Q Consensus 91 ~IA~~lpgRT~~q~knRW~~llrk~~ 116 (267)
.||++|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998763
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=2.8e-35 Score=234.04 Aligned_cols=103 Identities=31% Similarity=0.561 Sum_probs=99.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024492 14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIA 93 (267)
Q Consensus 14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA 93 (267)
||+||+|||++|+.+|..||..+|..||..||+ |+++||++||.++|+|.+++|+||.|||++|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999998899999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhhhHHHh
Q 024492 94 ARLPGRTDNEIKNVWHTHLKKRLK 117 (267)
Q Consensus 94 ~~lpgRT~~q~knRW~~llrk~~~ 117 (267)
++|||||+++|++||+.++++..+
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHH
Confidence 999999999999999999988654
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=7.8e-35 Score=239.07 Aligned_cols=107 Identities=41% Similarity=0.752 Sum_probs=102.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHh
Q 024492 14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIA 93 (267)
Q Consensus 14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA 93 (267)
||+||+|||++|+.+|..||..+|..||..|++ |+++||++||.++|+|.+++|+||.|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 799999999999999999998899999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhhhHHHhhhhc
Q 024492 94 ARLPGRTDNEIKNVWHTHLKKRLKQKQQ 121 (267)
Q Consensus 94 ~~lpgRT~~q~knRW~~llrk~~~~~~~ 121 (267)
++|||||+++|++||+.++++++.....
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~ 108 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSN 108 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999998765543
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=1.5e-34 Score=236.16 Aligned_cols=106 Identities=37% Similarity=0.631 Sum_probs=101.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 024492 8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGN 87 (267)
Q Consensus 8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~ 87 (267)
.+++.++|+||+|||++|+.+|.+||. +|..||+.+++ |+++||++||.++|+|.+++|+||.|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 478899999999999999999999998 99999999998 9999999999999999999999999999999999999999
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHhhhHH
Q 024492 88 RWSAIAARLPGRTDNEIKNVWHTHLKKR 115 (267)
Q Consensus 88 kWs~IA~~lpgRT~~q~knRW~~llrk~ 115 (267)
+|++||++|||||+++|++||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988763
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.1e-34 Score=236.86 Aligned_cols=108 Identities=45% Similarity=0.869 Sum_probs=102.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 024492 8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGN 87 (267)
Q Consensus 8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~ 87 (267)
.+|++++|+||+|||++|+.+|++||..+|..||+.+++ |+++||++||.++|+|.+++|+||+|||++|+++|++||+
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 478999999999999999999999998899999999998 9999999999999999999999999999999999999999
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492 88 RWSAIAARLPGRTDNEIKNVWHTHLKKRL 116 (267)
Q Consensus 88 kWs~IA~~lpgRT~~q~knRW~~llrk~~ 116 (267)
+|+.||++|||||+++|++||+.++++++
T Consensus 100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 100 RWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998753
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.8e-32 Score=231.16 Aligned_cols=108 Identities=46% Similarity=0.870 Sum_probs=103.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 024492 8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGN 87 (267)
Q Consensus 8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~ 87 (267)
..|++++|+||+|||++|+.+|.+||..+|..||+.+++ |+++||+.||.++|+|.+++++||+|||++|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 368899999999999999999999998789999999998 9999999999999999999999999999999999999999
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492 88 RWSAIAARLPGRTDNEIKNVWHTHLKKRL 116 (267)
Q Consensus 88 kWs~IA~~lpgRT~~q~knRW~~llrk~~ 116 (267)
+|+.||++|||||+++|+|||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.6e-31 Score=225.44 Aligned_cols=105 Identities=34% Similarity=0.711 Sum_probs=62.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCC-cH
Q 024492 11 GLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGN-RW 89 (267)
Q Consensus 11 ~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~-kW 89 (267)
++++|+||+|||++|+++|.+||..+|..||+.+++ |+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 468999999999999999999998899999999998 9999999999999999999999999999999999999996 79
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492 90 SAIAARLPGRTDNEIKNVWHTHLKKRL 116 (267)
Q Consensus 90 s~IA~~lpgRT~~q~knRW~~llrk~~ 116 (267)
..||++|||||++||++||+++|++.+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~ 108 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEV 108 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTS
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccc
Confidence 999999999999999999999987654
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=7.5e-23 Score=150.93 Aligned_cols=67 Identities=28% Similarity=0.606 Sum_probs=64.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHH
Q 024492 8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEE 75 (267)
Q Consensus 8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED 75 (267)
..+++++|+||+|||++|+.+|.+||..+|..||+.|++ |+++||++||+++|+|.+++++||.|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 357899999999999999999999998899999999997 9999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.85 E-value=2.7e-22 Score=163.42 Aligned_cols=76 Identities=32% Similarity=0.702 Sum_probs=52.2
Q ss_pred cchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCC-cHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492 40 LPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGN-RWSAIAARLPGRTDNEIKNVWHTHLKKRL 116 (267)
Q Consensus 40 IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~llrk~~ 116 (267)
||+.+++ |+++||+.||.++|+|.+++|+||+|||++|+++|++||. +|.+||..|||||+.||++||+++|++.+
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~ 77 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEV 77 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSS
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccc
Confidence 7888988 9999999999999999999999999999999999999995 69999999999999999999999987654
No 10
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-19 Score=135.23 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=47.4
Q ss_pred cccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhh
Q 024492 53 CRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHL 112 (267)
Q Consensus 53 Cr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~ll 112 (267)
.--||.++|+|++++|+||+|||++|+++|++||++|++||+.| |||+++||+||+.+.
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 999999999999653
No 11
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.76 E-value=4.6e-19 Score=158.42 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=92.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCC-----ccccchhhcccccccccccchhcccCCCCC-----------------
Q 024492 9 KMGLKKGPWTPEEDQILINYVKLYGHGN-----WRALPKQAGLLRCGKSCRLRWINYLRPDIK----------------- 66 (267)
Q Consensus 9 K~~lkkG~WT~EEDe~L~~~V~~~G~~n-----W~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ik----------------- 66 (267)
...+++++||+|||++|+++|.+||..+ |..||+.|++ |++.|||.||+++|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4567899999999999999999998643 9999999998 9999999999999999996
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-c--------------------------------CC--------------
Q 024492 67 ------------RGNFTREEEDTIINLHEM-L--------------------------------GN-------------- 87 (267)
Q Consensus 67 ------------kg~WT~EED~~Li~lv~~-~--------------------------------G~-------------- 87 (267)
+..||.|||-.|...+++ + |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 899999999999999877 1 11
Q ss_pred -----------cHHHHhhhCCCCCHHHHHHHHHHhhhHH
Q 024492 88 -----------RWSAIAARLPGRTDNEIKNVWHTHLKKR 115 (267)
Q Consensus 88 -----------kWs~IA~~lpgRT~~q~knRW~~llrk~ 115 (267)
.|..||+.+|+||.+++|+||+.+|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999999764
No 12
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=125.92 Aligned_cols=60 Identities=23% Similarity=0.446 Sum_probs=56.8
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhHHHhhh
Q 024492 59 NYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQK 119 (267)
Q Consensus 59 n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk~~~~~ 119 (267)
.+|+|.+++++||.|||++|+++|++||++|.+||+ |+|||++|||+||+.+|++.+++.
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 379999999999999999999999999999999999 889999999999999999988754
No 13
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.73 E-value=6.3e-19 Score=143.45 Aligned_cols=82 Identities=20% Similarity=0.394 Sum_probs=77.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhh----cccccccccccchhcccC-----CCCCCC-CCCHHHHHHH
Q 024492 9 KMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQA----GLLRCGKSCRLRWINYLR-----PDIKRG-NFTREEEDTI 78 (267)
Q Consensus 9 K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l----~~~Rt~kqCr~Rw~n~L~-----p~ikkg-~WT~EED~~L 78 (267)
++..++++||+|||+.|+.+|++||.++|..|++.+ ++ |++.+|++||.++|+ |.+++| +|++||+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 567789999999999999999999999999999985 55 999999999999998 999999 9999999999
Q ss_pred HHHHHHcCCcHHH
Q 024492 79 INLHEMLGNRWSA 91 (267)
Q Consensus 79 i~lv~~~G~kWs~ 91 (267)
+.++..|||+|.+
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999976
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.73 E-value=5.6e-18 Score=125.56 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=55.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhHHHhh
Q 024492 61 LRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQ 118 (267)
Q Consensus 61 L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk~~~~ 118 (267)
++|.+++++||.|||++|+++|++||++|..||++|||||++|||+||+.++++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999999999999999999987665
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=3.7e-18 Score=122.02 Aligned_cols=57 Identities=28% Similarity=0.546 Sum_probs=54.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCC
Q 024492 9 KMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIK 66 (267)
Q Consensus 9 K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ik 66 (267)
.|++++|+||+|||++|+++|.+||..+|..||+.|++ |+++||+.||.++|+|+++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 47889999999999999999999998899999999998 9999999999999999876
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.70 E-value=6.7e-18 Score=137.56 Aligned_cols=79 Identities=22% Similarity=0.373 Sum_probs=72.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhh----cccccccccccchhccc-----CCCCCCCCCCHHH-HHHH
Q 024492 9 KMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQA----GLLRCGKSCRLRWINYL-----RPDIKRGNFTREE-EDTI 78 (267)
Q Consensus 9 K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l----~~~Rt~kqCr~Rw~n~L-----~p~ikkg~WT~EE-D~~L 78 (267)
+...++++||+|||+.|+++|++||.++|..|++.. ++ |++.||++||.|++ +|.+++|.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 344578999999999999999999999999999974 45 99999999999999 8999999999999 8999
Q ss_pred HHHHHHcCCc
Q 024492 79 INLHEMLGNR 88 (267)
Q Consensus 79 i~lv~~~G~k 88 (267)
+.+|..||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999975
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=1.1e-17 Score=119.50 Aligned_cols=55 Identities=24% Similarity=0.462 Sum_probs=52.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492 62 RPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116 (267)
Q Consensus 62 ~p~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk~~ 116 (267)
+|.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.||++||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 699999999999999999999999998754
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.70 E-value=4.9e-18 Score=118.10 Aligned_cols=52 Identities=52% Similarity=0.938 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCC
Q 024492 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPD 64 (267)
Q Consensus 12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ 64 (267)
+++|+||+|||++|+++|.+||..+|..||+.+++ |+++||+.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 58999999999999999999998889999999998 99999999999999995
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.68 E-value=1e-17 Score=116.44 Aligned_cols=52 Identities=33% Similarity=0.660 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCC
Q 024492 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPD 64 (267)
Q Consensus 12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ 64 (267)
+++|+||+|||++|+.+|.+||.++|..||+.+++ |+++||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57899999999999999999998899999999998 99999999999999995
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.68 E-value=1.2e-17 Score=122.73 Aligned_cols=62 Identities=24% Similarity=0.378 Sum_probs=58.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhc--ccccccccccchhcccCCCCCCCCCC
Q 024492 9 KMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAG--LLRCGKSCRLRWINYLRPDIKRGNFT 71 (267)
Q Consensus 9 K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~--~~Rt~kqCr~Rw~n~L~p~ikkg~WT 71 (267)
++..++|+||+|||++|+.+|++||.++|..||+.++ + |++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 5677899999999999999999999889999999999 6 999999999999999999998764
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.67 E-value=5.2e-17 Score=112.81 Aligned_cols=50 Identities=34% Similarity=0.643 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC-cHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 65 IKRGNFTREEEDTIINLHEMLGN-RWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 65 ikkg~WT~EED~~Li~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
+++++||.|||++|+++|.+||. +|..||++|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999998 999999999999999999999999875
No 22
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.66 E-value=9.5e-17 Score=111.57 Aligned_cols=50 Identities=38% Similarity=0.800 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC-cHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 65 IKRGNFTREEEDTIINLHEMLGN-RWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 65 ikkg~WT~EED~~Li~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
+++|+||+|||++|+++|.+||. +|.+||+.|+|||++||++||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999999875
No 23
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.9e-17 Score=118.87 Aligned_cols=57 Identities=25% Similarity=0.418 Sum_probs=53.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhHHHhh
Q 024492 62 RPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQ 118 (267)
Q Consensus 62 ~p~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk~~~~ 118 (267)
.|.+++|+||.|||++|+++|.+|| ++|.+||.+|+|||+.||++||+++|++.+++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~ 61 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence 5789999999999999999999999 89999999999999999999999999987654
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.65 E-value=1.2e-16 Score=117.28 Aligned_cols=59 Identities=25% Similarity=0.335 Sum_probs=54.6
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCC--CCCHHHHHHHHHHhhhHHHhh
Q 024492 60 YLRPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLP--GRTDNEIKNVWHTHLKKRLKQ 118 (267)
Q Consensus 60 ~L~p~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lp--gRT~~q~knRW~~llrk~~~~ 118 (267)
...|..++++||+|||++|+++|.+|| ++|..||.+|+ |||+.||++||+++|++.+.+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 456788999999999999999999999 79999999999 999999999999999987654
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.64 E-value=2.3e-16 Score=110.21 Aligned_cols=49 Identities=29% Similarity=0.424 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCC--CCCHHHHHHHHHHhhhH
Q 024492 66 KRGNFTREEEDTIINLHEMLG-NRWSAIAARLP--GRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 66 kkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lp--gRT~~q~knRW~~llrk 114 (267)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 579999999999999999999 79999999999 99999999999999875
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=3.5e-16 Score=112.05 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=49.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 62 RPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 62 ~p~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
.|.+.+++||+|||++|+++|++|| ++|.+||++|+|||+.||++||+++|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 8999999999999999999999998754
No 27
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.62 E-value=9.6e-17 Score=116.88 Aligned_cols=55 Identities=33% Similarity=0.529 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhc-ccccccccccchhcccCCCCC
Q 024492 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAG-LLRCGKSCRLRWINYLRPDIK 66 (267)
Q Consensus 12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~-~~Rt~kqCr~Rw~n~L~p~ik 66 (267)
.+|++||+|||++|+++|++||.++|..||+.++ .+|++.||++||.|+++|.++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4789999999999999999999989999999876 139999999999999999874
No 28
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.8e-16 Score=115.69 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcC------CcHHHHhhhCCCCCHHHHHHHHHHhhhHHHhh
Q 024492 62 RPDIKRGNFTREEEDTIINLHEMLG------NRWSAIAARLPGRTDNEIKNVWHTHLKKRLKQ 118 (267)
Q Consensus 62 ~p~ikkg~WT~EED~~Li~lv~~~G------~kWs~IA~~lpgRT~~q~knRW~~llrk~~~~ 118 (267)
+|.+.+++||.|||++|+++|.+|| ++|.+||++|+|||..||++||+.+|++.++.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 5889999999999999999999999 78999999999999999999999999876543
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=2e-16 Score=113.31 Aligned_cols=55 Identities=22% Similarity=0.479 Sum_probs=51.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCC
Q 024492 10 MGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDI 65 (267)
Q Consensus 10 ~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~i 65 (267)
+.+++++||+|||++|+++|++||..+|..||+.+++ |+++||+.||.++|.+..
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCCC
Confidence 5789999999999999999999998899999999998 999999999999998753
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=9.9e-16 Score=111.50 Aligned_cols=52 Identities=29% Similarity=0.480 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCC--CCCHHHHHHHHHHhhhHHH
Q 024492 65 IKRGNFTREEEDTIINLHEMLG-NRWSAIAARLP--GRTDNEIKNVWHTHLKKRL 116 (267)
Q Consensus 65 ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lp--gRT~~q~knRW~~llrk~~ 116 (267)
.++++||+|||++|+++|.+|| ++|.+||+.++ |||+.||++||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 58999999865 9999999999999988754
No 31
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.57 E-value=3.4e-15 Score=106.37 Aligned_cols=51 Identities=25% Similarity=0.381 Sum_probs=47.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCC-CCCHHHHHHHHHHhh
Q 024492 62 RPDIKRGNFTREEEDTIINLHEMLG-NRWSAIAARLP-GRTDNEIKNVWHTHL 112 (267)
Q Consensus 62 ~p~ikkg~WT~EED~~Li~lv~~~G-~kWs~IA~~lp-gRT~~q~knRW~~ll 112 (267)
...+.+++||+|||++|+++|++|| ++|.+||++|+ |||+.||++||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999999 89999999999 999999999999864
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=5.7e-16 Score=108.19 Aligned_cols=49 Identities=31% Similarity=0.507 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccchhhc--ccccccccccchhcccC
Q 024492 13 KKGPWTPEEDQILINYVKLYGHGNWRALPKQAG--LLRCGKSCRLRWINYLR 62 (267)
Q Consensus 13 kkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~--~~Rt~kqCr~Rw~n~L~ 62 (267)
++|+||+|||++|+.+|++||.++|..||+.++ + |++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999999 6 999999999999885
No 33
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.1e-16 Score=115.00 Aligned_cols=59 Identities=24% Similarity=0.386 Sum_probs=54.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCC
Q 024492 8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGN 69 (267)
Q Consensus 8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~ 69 (267)
..|.+++++||+|||++|+.+|+.||. +|..||+ +++ |+++||+.||.++|+|.++++.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 468999999999999999999999997 9999999 776 9999999999999999877653
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.3e-16 Score=115.93 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=56.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-----CCccccchhhcccccccccccchhcccCCCCCCCC
Q 024492 8 EKMGLKKGPWTPEEDQILINYVKLYGH-----GNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGN 69 (267)
Q Consensus 8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~-----~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~ 69 (267)
.+|++++++||+|||++|+++|.+||. .+|..||+.|++ |+++||+.||++||.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999996 689999999998 9999999999999999887764
No 35
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.34 E-value=2.5e-16 Score=121.54 Aligned_cols=57 Identities=26% Similarity=0.272 Sum_probs=53.7
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhHH
Q 024492 59 NYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKR 115 (267)
Q Consensus 59 n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk~ 115 (267)
..+.|.+++|+||.|||++|+++|.+||++|..||.+|+|||++||++||+.++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 357889999999999999999999999999999999999999999999999999864
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.54 E-value=1.9e-15 Score=107.72 Aligned_cols=51 Identities=24% Similarity=0.517 Sum_probs=47.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhccc
Q 024492 11 GLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL 61 (267)
Q Consensus 11 ~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L 61 (267)
.+.+++||+|||++|+++|++||.++|..||+.++++|+++||+.||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998899999999993399999999999876
No 37
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.50 E-value=2.6e-14 Score=106.67 Aligned_cols=53 Identities=11% Similarity=0.242 Sum_probs=48.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcC----CcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 62 RPDIKRGNFTREEEDTIINLHEMLG----NRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 62 ~p~ikkg~WT~EED~~Li~lv~~~G----~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
.+.+.+++||.|||.+|++++.+|| ++|.+||++|||||.+||++||+.+++.
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 3567889999999999999999999 7899999999999999999999988753
No 38
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.49 E-value=3.6e-15 Score=110.38 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=54.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCC
Q 024492 8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKR 67 (267)
Q Consensus 8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikk 67 (267)
..|.+++|+||+|||++|+.+|.+||. +|..||+.|++ |++.||+.||+++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999997 99999999998 99999999999999887665
No 39
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.44 E-value=2.7e-14 Score=113.54 Aligned_cols=79 Identities=22% Similarity=0.375 Sum_probs=68.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhh----cccccccccccchhccc-----CCCCCCCCCCHHHHHH-
Q 024492 8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQA----GLLRCGKSCRLRWINYL-----RPDIKRGNFTREEEDT- 77 (267)
Q Consensus 8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l----~~~Rt~kqCr~Rw~n~L-----~p~ikkg~WT~EED~~- 77 (267)
.+...++++||+|||+.|+.+|++||.++|..|++.+ ++ |++.+|++||.+++ +|.+++|.-+++|--.
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADH-RTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 3567789999999999999999999999999999975 45 99999999999999 6999999888877665
Q ss_pred HHHHHHHcCC
Q 024492 78 IINLHEMLGN 87 (267)
Q Consensus 78 Li~lv~~~G~ 87 (267)
+++|+..+|+
T Consensus 86 v~~~~~~~~~ 95 (105)
T 2aje_A 86 VLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877664
No 40
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.44 E-value=7.8e-14 Score=113.31 Aligned_cols=56 Identities=25% Similarity=0.502 Sum_probs=51.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhHHHh
Q 024492 62 RPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLK 117 (267)
Q Consensus 62 ~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk~~~ 117 (267)
.+..++|+||+|||++|+++|.+||.+|..||+.|+|||..||+.||.++|.+.++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~ 61 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSIS 61 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccc
Confidence 45788999999999999999999999999999999999999999999999876543
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.44 E-value=5.7e-14 Score=107.28 Aligned_cols=69 Identities=23% Similarity=0.482 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccchh----hcccccccccccchhccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 024492 15 GPWTPEEDQILINYVKLYGHGNWRALPKQ----AGLLRCGKSCRLRWINYL-----RPDIKRG-NFTREEEDTIINLHEM 84 (267)
Q Consensus 15 G~WT~EEDe~L~~~V~~~G~~nW~~IA~~----l~~~Rt~kqCr~Rw~n~L-----~p~ikkg-~WT~EED~~Li~lv~~ 84 (267)
++||+|||+.|+.+|++||.++|..|++. +++ |++.+|++||.|+| .|.+++| +...+...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999986 666 99999999999998 6877766 6777777889998864
No 42
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.44 E-value=6.8e-14 Score=109.77 Aligned_cols=53 Identities=36% Similarity=0.787 Sum_probs=48.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCC-cHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492 64 DIKRGNFTREEEDTIINLHEMLGN-RWSAIAARLPGRTDNEIKNVWHTHLKKRL 116 (267)
Q Consensus 64 ~ikkg~WT~EED~~Li~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~llrk~~ 116 (267)
++++|+||+|||++|+++|++||. +|..||+.|||||..||++||.++|.+.+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~ 54 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEV 54 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcc
Confidence 478999999999999999999996 79999999999999999999999886543
No 43
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.42 E-value=1.1e-13 Score=104.58 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=45.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHh
Q 024492 63 PDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTH 111 (267)
Q Consensus 63 p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~l 111 (267)
....+++||.|||++|+++|++||++|.+||++|++||..||++||..+
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3456899999999999999999999999999999999999999999865
No 44
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.41 E-value=7.4e-14 Score=104.23 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=48.9
Q ss_pred CccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCC
Q 024492 3 RAPCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRG 68 (267)
Q Consensus 3 R~p~~~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg 68 (267)
|.--...|++++|+||+|||++|+++|++||. .|..||+.+ + |++.||+.||.. |....+.|
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~~G 73 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCNTG 73 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCSCC
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHccCC
Confidence 33445678999999999999999999999997 699999999 6 999999999974 55554443
No 45
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.39 E-value=5.1e-14 Score=115.03 Aligned_cols=83 Identities=19% Similarity=0.333 Sum_probs=61.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 024492 8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGN 87 (267)
Q Consensus 8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~ 87 (267)
..|++++|+||+|||++|+.+|.+||. +|..||+.|++ |++.||+.||+++|++.+..++|+.+- +......+.
T Consensus 48 l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~g-Rt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~ 121 (131)
T 3zqc_A 48 LDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPG-RTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKR 121 (131)
T ss_dssp TSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTT-CCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC---
T ss_pred cCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhh
Confidence 368999999999999999999999996 99999999998 999999999999999999999988652 111122345
Q ss_pred cHHHHhhhC
Q 024492 88 RWSAIAARL 96 (267)
Q Consensus 88 kWs~IA~~l 96 (267)
+|..|++.|
T Consensus 122 ~~~~i~k~~ 130 (131)
T 3zqc_A 122 KAADVPKKL 130 (131)
T ss_dssp ---------
T ss_pred hhhhcchhc
Confidence 677777765
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=103.37 Aligned_cols=54 Identities=20% Similarity=0.503 Sum_probs=50.0
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhccc
Q 024492 6 CCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL 61 (267)
Q Consensus 6 ~~~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L 61 (267)
.+.+....+++||+|||++|+++|++|| .+|..||+++++ |+..||+.||.++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRLP 63 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTSC
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence 4567778899999999999999999999 799999999998 99999999999984
No 47
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.36 E-value=8.6e-13 Score=100.71 Aligned_cols=49 Identities=27% Similarity=0.511 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHHcCC-cHHHHhhh----CCCCCHHHHHHHHHHhhhHHH
Q 024492 68 GNFTREEEDTIINLHEMLGN-RWSAIAAR----LPGRTDNEIKNVWHTHLKKRL 116 (267)
Q Consensus 68 g~WT~EED~~Li~lv~~~G~-kWs~IA~~----lpgRT~~q~knRW~~llrk~~ 116 (267)
++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999996 99999996 899999999999999998643
No 48
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.36 E-value=4e-13 Score=106.11 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-cHHHHhhhCCCCCHHHHHHHHHHhhhHHHh
Q 024492 67 RGNFTREEEDTIINLHEMLGN-RWSAIAARLPGRTDNEIKNVWHTHLKKRLK 117 (267)
Q Consensus 67 kg~WT~EED~~Li~lv~~~G~-kWs~IA~~lpgRT~~q~knRW~~llrk~~~ 117 (267)
||.||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~ 52 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALR 52 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccccc
Confidence 689999999999999999995 899999999999999999999999876543
No 49
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.35 E-value=4.4e-13 Score=119.89 Aligned_cols=55 Identities=29% Similarity=0.534 Sum_probs=49.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCc------HHHHhhhCCCCCHHHHHHHHHHhhhHHHh
Q 024492 63 PDIKRGNFTREEEDTIINLHEMLGNR------WSAIAARLPGRTDNEIKNVWHTHLKKRLK 117 (267)
Q Consensus 63 p~ikkg~WT~EED~~Li~lv~~~G~k------Ws~IA~~lpgRT~~q~knRW~~llrk~~~ 117 (267)
+.+++++||+|||++|+++|++||++ |.+||++|||||+++||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 46789999999999999999999986 99999999999999999999999999876
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.34 E-value=1.3e-12 Score=94.33 Aligned_cols=49 Identities=24% Similarity=0.493 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcHHHHh---hhCCCCCHHHHHHHHHHhhhH
Q 024492 66 KRGNFTREEEDTIINLHEMLGNRWSAIA---ARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 66 kkg~WT~EED~~Li~lv~~~G~kWs~IA---~~lpgRT~~q~knRW~~llrk 114 (267)
++.+||+|||+.|+++|++||.+|..|+ ..++|||..+||+||+++.|+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 5789999999999999999999999999 577999999999999998764
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.34 E-value=1.1e-12 Score=106.71 Aligned_cols=55 Identities=27% Similarity=0.477 Sum_probs=50.7
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHcCC-cHHHHhhh----CCCCCHHHHHHHHHHhhhH
Q 024492 60 YLRPDIKRGNFTREEEDTIINLHEMLGN-RWSAIAAR----LPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 60 ~L~p~ikkg~WT~EED~~Li~lv~~~G~-kWs~IA~~----lpgRT~~q~knRW~~llrk 114 (267)
.+.+..++++||.|||+.|+++|++||+ +|+.|++. |+|||+.+||+||+++++.
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4567889999999999999999999996 99999997 4999999999999999985
No 52
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.33 E-value=2.4e-12 Score=100.19 Aligned_cols=50 Identities=18% Similarity=0.395 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CcHHHHhhhCCCCCHHHHHHHHHHhhhHH
Q 024492 66 KRGNFTREEEDTIINLHEMLG----NRWSAIAARLPGRTDNEIKNVWHTHLKKR 115 (267)
Q Consensus 66 kkg~WT~EED~~Li~lv~~~G----~kWs~IA~~lpgRT~~q~knRW~~llrk~ 115 (267)
.+++||.|||.+|++++.+|| ++|.+||++|||||.++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999996 78999999999999999999999988764
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.33 E-value=1.9e-12 Score=102.85 Aligned_cols=54 Identities=24% Similarity=0.422 Sum_probs=48.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-cHHHHhhhC----CCCCHHHHHHHHHHhhhHH
Q 024492 62 RPDIKRGNFTREEEDTIINLHEMLGN-RWSAIAARL----PGRTDNEIKNVWHTHLKKR 115 (267)
Q Consensus 62 ~p~ikkg~WT~EED~~Li~lv~~~G~-kWs~IA~~l----pgRT~~q~knRW~~llrk~ 115 (267)
.+..++++||.|||+.|+++|++||. +|+.|++.+ +|||+.+||+||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 35678999999999999999999996 999999965 8999999999999998753
No 54
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.98 E-value=1.7e-13 Score=105.61 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=50.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCC
Q 024492 8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRP 63 (267)
Q Consensus 8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p 63 (267)
.-|++++|+||+|||++|+.+|..||. +|..||+.+++ |++.||+.||+++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 357889999999999999999999997 89999999998 9999999999999864
No 55
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.28 E-value=5.4e-13 Score=99.54 Aligned_cols=55 Identities=16% Similarity=0.387 Sum_probs=50.0
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhC---CCCccccchhhcccccccccccchhcccC
Q 024492 7 CEKMGLKKGPWTPEEDQILINYVKLYG---HGNWRALPKQAGLLRCGKSCRLRWINYLR 62 (267)
Q Consensus 7 ~~K~~lkkG~WT~EEDe~L~~~V~~~G---~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~ 62 (267)
-+++...+++||+|||++|..+++.|| ..+|..||++||+ |+.+||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 467788999999999999999999999 3589999999998 999999999998764
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.25 E-value=7.3e-12 Score=101.93 Aligned_cols=54 Identities=28% Similarity=0.469 Sum_probs=48.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-cHHHHhhh----CCCCCHHHHHHHHHHhhhHH
Q 024492 62 RPDIKRGNFTREEEDTIINLHEMLGN-RWSAIAAR----LPGRTDNEIKNVWHTHLKKR 115 (267)
Q Consensus 62 ~p~ikkg~WT~EED~~Li~lv~~~G~-kWs~IA~~----lpgRT~~q~knRW~~llrk~ 115 (267)
....++++||.|||+.|+++|++||. +|+.|++. |+|||..+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999996 99999986 48999999999999999754
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.09 E-value=1.7e-10 Score=89.70 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=60.2
Q ss_pred ccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhC-----CCCCHHHHHHHHHHhhhHHHhhh
Q 024492 50 GKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARL-----PGRTDNEIKNVWHTHLKKRLKQK 119 (267)
Q Consensus 50 ~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~l-----pgRT~~q~knRW~~llrk~~~~~ 119 (267)
..-+.++|.++|.+ ++||.||++.|++|+++||.+|..|+..+ ++||..+||+||..+.++-++.+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 46688999999987 89999999999999999999999999999 58999999999999998876654
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=4.8e-10 Score=80.36 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhh
Q 024492 66 KRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHL 112 (267)
Q Consensus 66 kkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~ll 112 (267)
..++||+||++++++++.+||.+|..||..|||||..+|.++|....
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999998643
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.97 E-value=7.6e-10 Score=82.18 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=45.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcC----CcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 64 DIKRGNFTREEEDTIINLHEMLG----NRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 64 ~ikkg~WT~EED~~Li~lv~~~G----~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
..+.+.||.||+++|.+++.+|+ ++|.+||++| |||.++|++||+.+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 6899999998 99999999999987654
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.96 E-value=1.1e-10 Score=90.87 Aligned_cols=48 Identities=13% Similarity=0.387 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCccccchhhcccccccccccchhccc
Q 024492 13 KKGPWTPEEDQILINYVKLYG---HGNWRALPKQAGLLRCGKSCRLRWINYL 61 (267)
Q Consensus 13 kkG~WT~EEDe~L~~~V~~~G---~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L 61 (267)
.+++||+|||++|..++++|| ..+|..||+.+|+ |+.+||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 468999999999999999997 4579999999998 99999999998865
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.83 E-value=3.2e-09 Score=94.29 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 66 KRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 66 kkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
..++||.||+.++++++.+||++|..||+.|++||..|||++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999987765
No 62
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.75 E-value=9.9e-09 Score=76.44 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHHcC----CcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 67 RGNFTREEEDTIINLHEMLG----NRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 67 kg~WT~EED~~Li~lv~~~G----~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
.+.||.||+.+|.+++..|+ .+|.+||..|||||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 46899999999999999998 4799999999999999999999987544
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.69 E-value=4.3e-09 Score=75.98 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccch---hhcccccccccccchhcccC
Q 024492 13 KKGPWTPEEDQILINYVKLYGHGNWRALPK---QAGLLRCGKSCRLRWINYLR 62 (267)
Q Consensus 13 kkG~WT~EEDe~L~~~V~~~G~~nW~~IA~---~l~~~Rt~kqCr~Rw~n~L~ 62 (267)
.+++||+|||+.|++.|++||. +|..|+. ++.+ |+...+++||++..+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 6799999999999999999998 9999994 5555 999999999998764
No 64
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=6.9e-09 Score=74.28 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=45.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhccc
Q 024492 8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL 61 (267)
Q Consensus 8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L 61 (267)
++..-..++||+||++++.+++.+||. +|..||+.+++ |+..||+.+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~-rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLER-KSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTT-SCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence 334446799999999999999999995 99999999998 99999999987654
No 65
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.52 E-value=1.2e-07 Score=67.58 Aligned_cols=47 Identities=26% Similarity=0.456 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHc--------CCc-HHHHhh-hCCCCCHHHHHHHHHHhhh
Q 024492 67 RGNFTREEEDTIINLHEML--------GNR-WSAIAA-RLPGRTDNEIKNVWHTHLK 113 (267)
Q Consensus 67 kg~WT~EED~~Li~lv~~~--------G~k-Ws~IA~-~lpgRT~~q~knRW~~llr 113 (267)
+.+||.|||.+|++.|.+| |++ |.++++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 8999999999999998764
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.48 E-value=3.2e-08 Score=73.37 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=43.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CCccccchhhcccccccccccchhcccC
Q 024492 11 GLKKGPWTPEEDQILINYVKLYGH---GNWRALPKQAGLLRCGKSCRLRWINYLR 62 (267)
Q Consensus 11 ~lkkG~WT~EEDe~L~~~V~~~G~---~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~ 62 (267)
..+++.||.|||++|..++.+|+. ..|..||+.+ + |+.++|+.||.....
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHHH
Confidence 346789999999999999999983 5799999998 4 999999999987654
No 67
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.41 E-value=1.6e-07 Score=91.46 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 024492 68 GNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLK 113 (267)
Q Consensus 68 g~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llr 113 (267)
..||.||-.++++++.+||..|..||.+++.||..|||++|..+.+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999976443
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.40 E-value=5.7e-08 Score=69.37 Aligned_cols=48 Identities=27% Similarity=0.475 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCccccch-hhcccccccccccchhcccC
Q 024492 14 KGPWTPEEDQILINYVKLY--------GHGNWRALPK-QAGLLRCGKSCRLRWINYLR 62 (267)
Q Consensus 14 kG~WT~EEDe~L~~~V~~~--------G~~nW~~IA~-~l~~~Rt~kqCr~Rw~n~L~ 62 (267)
+.+||+|||+.|+.+|.+| |..-|..+++ .++. ++-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 6799999999999999999 5557999999 6877 999999999999884
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.27 E-value=2.3e-07 Score=69.03 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCccccchhhcccccccccccchhcccC
Q 024492 14 KGPWTPEEDQILINYVKLYGH---GNWRALPKQAGLLRCGKSCRLRWINYLR 62 (267)
Q Consensus 14 kG~WT~EEDe~L~~~V~~~G~---~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~ 62 (267)
...||.+|+++|..++..|+. .+|..||..+|+ |+..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 468999999999999999975 479999999999 999999999988754
No 70
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.23 E-value=1.4e-06 Score=67.12 Aligned_cols=46 Identities=22% Similarity=0.397 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHHHcCC---cHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 69 NFTREEEDTIINLHEMLGN---RWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 69 ~WT~EED~~Li~lv~~~G~---kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
.||+|||+.|+...++-|. .|..||+.|.+|+.+||++||+.|++-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6999999999999999996 799999999999999999999998765
No 71
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.18 E-value=6.4e-07 Score=79.61 Aligned_cols=50 Identities=22% Similarity=0.466 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccC
Q 024492 11 GLKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLR 62 (267)
Q Consensus 11 ~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~ 62 (267)
....++||+||+++++.++.+||. +|..||+.+++ |+..||+.+|+++.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 345689999999999999999995 99999999999 999999999998774
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.15 E-value=3.2e-07 Score=68.23 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCC----cHHHHhhhCCCCCHHHHHHHHH
Q 024492 67 RGNFTREEEDTIINLHEMLGN----RWSAIAARLPGRTDNEIKNVWH 109 (267)
Q Consensus 67 kg~WT~EED~~Li~lv~~~G~----kWs~IA~~lpgRT~~q~knRW~ 109 (267)
.+.||.||+++|.+++.+|+. +|.+||+.|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999998874
No 73
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.41 E-value=3.3e-07 Score=67.07 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---cHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 69 NFTREEEDTIINLHEMLGN---RWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 69 ~WT~EED~~Li~lv~~~G~---kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
.||.|||+.|+..+++-|. .|..||+.| +|+++||++||+.+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999997 799999999 99999999999998763
No 74
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.10 E-value=7.2e-06 Score=63.54 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=52.3
Q ss_pred cchhcccCCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCC-----CCCHHHHHHHHHHhhhHHHhhh
Q 024492 55 LRWINYLRPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLP-----GRTDNEIKNVWHTHLKKRLKQK 119 (267)
Q Consensus 55 ~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lp-----gRT~~q~knRW~~llrk~~~~~ 119 (267)
+.|..+|. ...||.||...|++|+++|+-+|..|+..+. .||-.++|.||..+.++-++.+
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 45666665 3689999999999999999999999999873 7999999999999998876544
No 75
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=9.6e-06 Score=58.26 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=44.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhh-hCCCCCHHHHHHHHHH
Q 024492 62 RPDIKRGNFTREEEDTIINLHEMLGNRWSAIAA-RLPGRTDNEIKNVWHT 110 (267)
Q Consensus 62 ~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~-~lpgRT~~q~knRW~~ 110 (267)
.|.++...||+||-.+..+.+.+||..|..|++ .|++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 477888999999999999999999999999999 5899999999988763
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.89 E-value=2.5e-05 Score=72.28 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccchhhccccccccccc-------chhc-----------------------c----
Q 024492 15 GPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRL-------RWIN-----------------------Y---- 60 (267)
Q Consensus 15 G~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~-------Rw~n-----------------------~---- 60 (267)
+.||..+...++.++.+||..+|..||..+++ ++...++. ||.. .
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999986 66544422 1100 0
Q ss_pred -------------c---CCCCCCCCCCHHHHHHHHHHHHHcC----CcHHHHhh------------hCCCCCHHHHHHHH
Q 024492 61 -------------L---RPDIKRGNFTREEEDTIINLHEMLG----NRWSAIAA------------RLPGRTDNEIKNVW 108 (267)
Q Consensus 61 -------------L---~p~ikkg~WT~EED~~Li~lv~~~G----~kWs~IA~------------~lpgRT~~q~knRW 108 (267)
| -+..+...||.|||..|+-++.+|| +.|..|-. .+..||+.+|..|-
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 0222446899999999999999999 57999963 34579999999999
Q ss_pred HHhhhHHHhh
Q 024492 109 HTHLKKRLKQ 118 (267)
Q Consensus 109 ~~llrk~~~~ 118 (267)
.+|++-..+.
T Consensus 270 ~tLi~~iekE 279 (304)
T 1ofc_X 270 NTLITLIERE 279 (304)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999764443
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.75 E-value=4.9e-06 Score=61.80 Aligned_cols=44 Identities=11% Similarity=0.279 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---Cccccchhhcccccccccccchh
Q 024492 14 KGPWTPEEDQILINYVKLYGHG---NWRALPKQAGLLRCGKSCRLRWI 58 (267)
Q Consensus 14 kG~WT~EEDe~L~~~V~~~G~~---nW~~IA~~l~~~Rt~kqCr~Rw~ 58 (267)
.+.||.+|+++|..++..|+.. .|.+||+.+|+ |+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4689999999999999999753 79999999998 99999999985
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.59 E-value=0.00011 Score=56.80 Aligned_cols=44 Identities=16% Similarity=0.112 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHH
Q 024492 67 RGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHT 110 (267)
Q Consensus 67 kg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~ 110 (267)
...||+||.++..+.+..||.+|.+||..||+||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999988764
No 79
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=3.6e-05 Score=55.22 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=44.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccch-hhcccccccccccchhc
Q 024492 8 EKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPK-QAGLLRCGKSCRLRWIN 59 (267)
Q Consensus 8 ~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~-~l~~~Rt~kqCr~Rw~n 59 (267)
-.|.+....||+||-++..+++.+||. +|..|++ .++. |+..+|..-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPN-KETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTT-SCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CcHHHHHHHHhc
Confidence 357888899999999999999999996 9999999 5888 999999887654
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.51 E-value=0.00022 Score=52.18 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcHHHHhh-hCCCCCHHHHHHHHH
Q 024492 67 RGNFTREEEDTIINLHEMLGNRWSAIAA-RLPGRTDNEIKNVWH 109 (267)
Q Consensus 67 kg~WT~EED~~Li~lv~~~G~kWs~IA~-~lpgRT~~q~knRW~ 109 (267)
...||+||-.+..+.+.+||..|..|++ .|++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4689999999999999999999999999 599999999999887
No 81
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.36 E-value=0.00018 Score=54.07 Aligned_cols=48 Identities=17% Similarity=0.485 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHcC----------CcHHHHhhhCC----CCCHHHHHHHHHHhhhH
Q 024492 67 RGNFTREEEDTIINLHEMLG----------NRWSAIAARLP----GRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 67 kg~WT~EED~~Li~lv~~~G----------~kWs~IA~~lp----gRT~~q~knRW~~llrk 114 (267)
...||.+|-.+||+++..+. ..|..||..|. .||+.||+++|.+|.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999997643 14999999873 69999999999987765
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.28 E-value=8.6e-05 Score=57.52 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhc----ccccccccccchhccc
Q 024492 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAG----LLRCGKSCRLRWINYL 61 (267)
Q Consensus 12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~----~~Rt~kqCr~Rw~n~L 61 (267)
|..++||.||++.|..++++|+. .|..|+.... .+|+..+++.||....
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999997 9999999983 2399999999998754
No 83
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.21 E-value=0.00013 Score=71.16 Aligned_cols=48 Identities=21% Similarity=0.459 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhccc
Q 024492 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL 61 (267)
Q Consensus 12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L 61 (267)
....+||.||-++++.++.+||. +|..||+.+++ |+..||+..|.++-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgT-KT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSS-CCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34689999999999999999995 99999999999 99999999887654
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.70 E-value=0.00058 Score=52.70 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhc
Q 024492 14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWIN 59 (267)
Q Consensus 14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n 59 (267)
...||+||.+++.+....||. +|..|++.+++ |+..+|..-|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~-Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLER-KTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCC-CCHHHHHHHHhc
Confidence 478999999999999999995 99999999998 999999887653
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.70 E-value=0.0006 Score=49.81 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccch-hhcccccccccccchhc
Q 024492 13 KKGPWTPEEDQILINYVKLYGHGNWRALPK-QAGLLRCGKSCRLRWIN 59 (267)
Q Consensus 13 kkG~WT~EEDe~L~~~V~~~G~~nW~~IA~-~l~~~Rt~kqCr~Rw~n 59 (267)
....||+||-++...++..||. +|..|++ .+++ |+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 4578999999999999999996 9999999 5888 999999887754
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.60 E-value=0.00025 Score=53.30 Aligned_cols=49 Identities=20% Similarity=0.479 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CCccccchhhc---ccccccccccchhccc
Q 024492 13 KKGPWTPEEDQILINYVKLYGH---------GNWRALPKQAG---LLRCGKSCRLRWINYL 61 (267)
Q Consensus 13 kkG~WT~EEDe~L~~~V~~~G~---------~nW~~IA~~l~---~~Rt~kqCr~Rw~n~L 61 (267)
+...||.+|-..|+.+...... .-|..||..|. -.|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5689999999999999876421 15999998844 4599999999998865
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.57 E-value=0.0054 Score=58.06 Aligned_cols=106 Identities=17% Similarity=0.234 Sum_probs=77.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccc----------------------------------------
Q 024492 15 GPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCR---------------------------------------- 54 (267)
Q Consensus 15 G~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr---------------------------------------- 54 (267)
+.||.-+=..++.++.+||-.+-..||..++++++...++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999988999999987224443332
Q ss_pred --------cchhcc---cCCC-CCCCCCCHHHHHHHHHHHHHcC----CcHHHHhhh------------CCCCCHHHHHH
Q 024492 55 --------LRWINY---LRPD-IKRGNFTREEEDTIINLHEMLG----NRWSAIAAR------------LPGRTDNEIKN 106 (267)
Q Consensus 55 --------~Rw~n~---L~p~-ikkg~WT~EED~~Li~lv~~~G----~kWs~IA~~------------lpgRT~~q~kn 106 (267)
.-|... ..+. -+...||.+||..||-++.+|| +.|.+|-.. +..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 111110 0111 1345799999999999999999 679999433 35799999999
Q ss_pred HHHHhhhHHHhhhh
Q 024492 107 VWHTHLKKRLKQKQ 120 (267)
Q Consensus 107 RW~~llrk~~~~~~ 120 (267)
|-..|++-..+...
T Consensus 284 Rc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 284 RGNTLLQCLEKEFN 297 (374)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999987554433
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.98 E-value=0.0028 Score=48.80 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=41.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC--CCccccchhhcccccccccccchhc
Q 024492 11 GLKKGPWTPEEDQILINYVKLYGH--GNWRALPKQAGLLRCGKSCRLRWIN 59 (267)
Q Consensus 11 ~lkkG~WT~EEDe~L~~~V~~~G~--~nW~~IA~~l~~~Rt~kqCr~Rw~n 59 (267)
|-+---||.|||..++...++.|. ..|..||+.++. |+..|+.+|++.
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~ 79 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE 79 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence 334457999999999999999876 479999999987 999999999865
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.43 E-value=0.0025 Score=46.59 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=42.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC--CCccccchhhcccccccccccchhcccC
Q 024492 10 MGLKKGPWTPEEDQILINYVKLYGH--GNWRALPKQAGLLRCGKSCRLRWINYLR 62 (267)
Q Consensus 10 ~~lkkG~WT~EEDe~L~~~V~~~G~--~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~ 62 (267)
.|-.--.||.|||..|+..+++-|. ..|..||+.+ + |++.|+..|++..+.
T Consensus 10 ~ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 10 KGEIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK 62 (70)
Confidence 3444468999999999999999886 3799999999 4 999999999987553
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.53 E-value=0.027 Score=48.22 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=32.8
Q ss_pred ccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccch
Q 024492 4 APCCEKMGLKKGPWTPEEDQILINYVKLYGHGNWRALPK 42 (267)
Q Consensus 4 ~p~~~K~~lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~ 42 (267)
-|++.++......||++||..|+..|.+||-++|..|-.
T Consensus 124 i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 124 IPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 356666666667899999999999999999999998854
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.43 E-value=0.016 Score=44.78 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=40.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccchhhc----ccccccccccchhccc
Q 024492 12 LKKGPWTPEEDQILINYVKLYGHGNWRALPKQAG----LLRCGKSCRLRWINYL 61 (267)
Q Consensus 12 lkkG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~----~~Rt~kqCr~Rw~n~L 61 (267)
++...||.||...|..++++|.. .|..|+.... ..|+..+.++||....
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999997 9999998854 2388888888887754
No 92
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.36 E-value=0.066 Score=49.35 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 024492 67 RGNFTREEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLK 113 (267)
Q Consensus 67 kg~WT~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llr 113 (267)
-+.||..+...++.+..+|| +.|..||..|+|+|..+|+..+.....
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 35899999999999999999 589999999999999999877665554
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.93 E-value=0.2 Score=35.98 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCc---HHHHhhhC--CCCCHHHHHHHHHHhh
Q 024492 66 KRGNFTREEEDTIINLHEMLGNR---WSAIAARL--PGRTDNEIKNVWHTHL 112 (267)
Q Consensus 66 kkg~WT~EED~~Li~lv~~~G~k---Ws~IA~~l--pgRT~~q~knRW~~ll 112 (267)
.+-.||+|..+..++++.++|.. +..|.+.| +|.|..+|+.+...+.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999954 88998876 7999999998877544
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.38 E-value=0.19 Score=42.77 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcC---CcHHHHhh--hCCCCCHHHHHHHHHHhhhH
Q 024492 66 KRGNFTREEEDTIINLHEMLG---NRWSAIAA--RLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 66 kkg~WT~EED~~Li~lv~~~G---~kWs~IA~--~lpgRT~~q~knRW~~llrk 114 (267)
....||+.|-..|+.++.+|| .+|..|+. .|.++|...|+..+..++..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 68999986 47899999999877766544
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.98 E-value=0.39 Score=43.51 Aligned_cols=29 Identities=38% Similarity=0.712 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccchh
Q 024492 15 GPWTPEEDQILINYVKLYGHGNWRALPKQ 43 (267)
Q Consensus 15 G~WT~EEDe~L~~~V~~~G~~nW~~IA~~ 43 (267)
..|+.+||..|+..|.+||.++|..|-.-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 56999999999999999999999999643
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=82.76 E-value=0.83 Score=32.72 Aligned_cols=48 Identities=10% Similarity=0.046 Sum_probs=33.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC--Cccccchhhcc-cccccccccchhc
Q 024492 12 LKKGPWTPEEDQILINYVKLYGHG--NWRALPKQAGL-LRCGKSCRLRWIN 59 (267)
Q Consensus 12 lkkG~WT~EEDe~L~~~V~~~G~~--nW~~IA~~l~~-~Rt~kqCr~Rw~n 59 (267)
..+-.||+|..+..+.+|.++|.. .+..|.+.|+- +.+..++.-+.+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 356799999999999999999942 15566666552 1455555554433
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=82.06 E-value=2.8 Score=37.82 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CcHHHHhh--hCCCCCHHHHHHHHHHhhh
Q 024492 67 RGNFTREEEDTIINLHEMLG---NRWSAIAA--RLPGRTDNEIKNVWHTHLK 113 (267)
Q Consensus 67 kg~WT~EED~~Li~lv~~~G---~kWs~IA~--~lpgRT~~q~knRW~~llr 113 (267)
+++||+.|-..|+..+.+|| .+|..|+. .|+.++...++.-+..++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 68899999999999999999 68999975 6789999999998887774
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=71.24 E-value=6.5 Score=26.41 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 73 EEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 73 EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
+.+..++.++-..|-.+.+||..+ |-+...|+++.+..+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 556667777778899999999999 89999999877765544
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=66.85 E-value=8.9 Score=26.47 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHH----cCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 73 EEEDTIINLHEM----LGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 73 EED~~Li~lv~~----~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
+.+..++.+.-- .|-.+.+||..+ |-+...|+.+.+..+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344555555554 678899999999 99999999987766655
No 100
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=63.20 E-value=13 Score=35.11 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHcC-CcHHHHhhhCC-CCCHHHHHHHHHHhh
Q 024492 68 GNFTREEEDTIINLHEMLG-NRWSAIAARLP-GRTDNEIKNVWHTHL 112 (267)
Q Consensus 68 g~WT~EED~~Li~lv~~~G-~kWs~IA~~lp-gRT~~q~knRW~~ll 112 (267)
+.||.-+=..++.+..+|| +.-..||..|. |+|..+|+.......
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw 170 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFW 170 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 5799999999999999999 56999999997 999999995544433
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=62.73 E-value=8.9 Score=26.10 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=30.8
Q ss_pred HHHHHHHHHHH----HcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 73 EEEDTIINLHE----MLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 73 EED~~Li~lv~----~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
+.+..++.+.- ..|-.+.+||..+ |-+...|+.+.+..+++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34445555554 3578899999999 99999999988776654
No 102
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=58.52 E-value=14 Score=26.62 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 73 EEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 73 EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
+.+..++.++-..|-.-.+||..| |-+...|+.+.+..+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455667777777788899999999 99999999888776554
No 103
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=57.63 E-value=8.2 Score=30.00 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=29.9
Q ss_pred HHHHHHHHcC--------CcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 77 TIINLHEMLG--------NRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 77 ~Li~lv~~~G--------~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
.|..+|..+| +.|..||..|.--....+|..|..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 4778888887 3699999988433378899999988865
No 104
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=53.88 E-value=20 Score=27.13 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=27.7
Q ss_pred HHHHHHHHcC--------CcHHHHhhhCCCCC----HHHHHHHHHHhhhH
Q 024492 77 TIINLHEMLG--------NRWSAIAARLPGRT----DNEIKNVWHTHLKK 114 (267)
Q Consensus 77 ~Li~lv~~~G--------~kWs~IA~~lpgRT----~~q~knRW~~llrk 114 (267)
.|..+|.++| +.|.+||..|.--. ...+|..|..+|-+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4777777777 46999999983222 46788888887765
No 105
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=52.96 E-value=18 Score=28.08 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=28.8
Q ss_pred HHHHHHHHcC--------CcHHHHhhhCCCCC----HHHHHHHHHHhhhH
Q 024492 77 TIINLHEMLG--------NRWSAIAARLPGRT----DNEIKNVWHTHLKK 114 (267)
Q Consensus 77 ~Li~lv~~~G--------~kWs~IA~~lpgRT----~~q~knRW~~llrk 114 (267)
+|..+|..+| +.|.+||..|.--. ...+|..|..+|-+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4777888888 46999999883221 56789999988865
No 106
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=50.81 E-value=35 Score=23.27 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 70 FTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 70 WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
+|+.|- .++.++ ..|-.-.+||..| |-+...|+.+.+..+++
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344444 444555 6788899999999 88999999887766554
No 107
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=50.01 E-value=4.9 Score=31.90 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=33.1
Q ss_pred CCccccchhhcccccc----cccccchhcccCCCCCCCCCCHHHHHHHHHHHH
Q 024492 35 GNWRALPKQAGLLRCG----KSCRLRWINYLRPDIKRGNFTREEEDTIINLHE 83 (267)
Q Consensus 35 ~nW~~IA~~l~~~Rt~----kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~ 83 (267)
+.|..|+..++...+. ...+..|.++|.|- ..++++|-..|.+-+.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 3799999998764322 35677899999773 2378888888876654
No 108
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=49.16 E-value=23 Score=27.71 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=28.2
Q ss_pred HHHHHHHHcC--------CcHHHHhhhCCCC--C--HHHHHHHHHHhhhH
Q 024492 77 TIINLHEMLG--------NRWSAIAARLPGR--T--DNEIKNVWHTHLKK 114 (267)
Q Consensus 77 ~Li~lv~~~G--------~kWs~IA~~lpgR--T--~~q~knRW~~llrk 114 (267)
+|..+|.++| +.|.+|+..|.-- + ...+|..|..+|-+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4777788887 3699999988321 1 35788888888866
No 109
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=49.09 E-value=23 Score=27.75 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=28.4
Q ss_pred HHHHHHHHcC--------CcHHHHhhhCCCCC----HHHHHHHHHHhhhH
Q 024492 77 TIINLHEMLG--------NRWSAIAARLPGRT----DNEIKNVWHTHLKK 114 (267)
Q Consensus 77 ~Li~lv~~~G--------~kWs~IA~~lpgRT----~~q~knRW~~llrk 114 (267)
+|..+|.++| +.|.+||..|.--+ ...+|+.|..+|-.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4777788887 46999999883222 45788989888876
No 110
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=48.25 E-value=4.7 Score=31.45 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=30.3
Q ss_pred HHHHHHHHhCC-------CCccccchhhcccccccccccchhcccCC
Q 024492 24 ILINYVKLYGH-------GNWRALPKQAGLLRCGKSCRLRWINYLRP 63 (267)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p 63 (267)
+|..+|.+.|. ..|..|+..++. -.+..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 46677777764 479999999987 4477888889888866
No 111
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=47.52 E-value=16 Score=30.76 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=18.7
Q ss_pred CCCCCCCCHHHHHHHH--------HHHHHhCC
Q 024492 11 GLKKGPWTPEEDQILI--------NYVKLYGH 34 (267)
Q Consensus 11 ~lkkG~WT~EEDe~L~--------~~V~~~G~ 34 (267)
.-..|-||+|+|+.|. +++++||.
T Consensus 111 ~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 111 PNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp TTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 3468999999999887 46677764
No 112
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=47.38 E-value=39 Score=24.62 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 66 KRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 66 kkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
.....|+.|-+.|.-++ .|-.-.+||..| |-+...|+++...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34467887777665554 788899999999 99999999988887655
No 113
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=47.02 E-value=12 Score=29.62 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=29.4
Q ss_pred HHHHHHHHcCC--------cHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 77 TIINLHEMLGN--------RWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 77 ~Li~lv~~~G~--------kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
+|..+|.+.|+ .|.+||..|.--....+|+.|..+|-+
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 36777777773 599999988433388999999998876
No 114
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=46.71 E-value=31 Score=27.27 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=24.1
Q ss_pred HcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 84 MLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 84 ~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
..|-...+||..| |-+...|+++.+..+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466799999999 89999999888766554
No 115
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=46.40 E-value=34 Score=24.92 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 69 NFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 69 ~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
..|+.|-+.|.. + ..|-.-.+||..| |-+...|+.+.+..+++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666555554 5 7888899999999 99999999987765554
No 116
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=45.51 E-value=34 Score=24.22 Aligned_cols=43 Identities=30% Similarity=0.247 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 69 NFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 69 ~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
..|+.|-+.|.. + ..|-.-.+||..| |-+...|+.+.+..+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666555544 4 6788899999999 89999999887766554
No 117
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=45.45 E-value=32 Score=24.55 Aligned_cols=41 Identities=12% Similarity=0.175 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHH----cCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 73 EEEDTIINLHEM----LGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 73 EED~~Li~lv~~----~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
+.+..++.+.-- .|-.+.+||..| |-+...|+.+-+..+++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 345555555554 577899999999 99999999877765544
No 118
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=44.63 E-value=38 Score=22.63 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 68 GNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 68 g~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
..+|+.|-+.|.. + ..|-.-.+||..+ |-+...|+.+.+..+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467666665555 4 6778899999999 88999999888765544
No 119
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=44.43 E-value=20 Score=28.74 Aligned_cols=44 Identities=7% Similarity=0.029 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhHHHh
Q 024492 73 EEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKKRLK 117 (267)
Q Consensus 73 EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk~~~ 117 (267)
+-|.+|+++.++.| -.|.+||+.+ |-+...|+.|++.+....+-
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i 47 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVI 47 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 56788888888777 5699999999 99999999999987766543
No 120
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=43.26 E-value=27 Score=27.43 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=29.1
Q ss_pred HHHHHHHHcC--------CcHHHHhhhC--CCC---CHHHHHHHHHHhhhH
Q 024492 77 TIINLHEMLG--------NRWSAIAARL--PGR---TDNEIKNVWHTHLKK 114 (267)
Q Consensus 77 ~Li~lv~~~G--------~kWs~IA~~l--pgR---T~~q~knRW~~llrk 114 (267)
.|..+|..+| +.|.+||..| +.. ....+|..|..+|-+
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 5777788888 4699999988 222 257889999998876
No 121
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=43.10 E-value=29 Score=27.33 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=49.8
Q ss_pred CCCCCHHHH--HHHHHHHHHhCCCCccccchhhcccccccccccchhcccCCCCCCCCCCHHHHHHHHHHHHHcC-----
Q 024492 14 KGPWTPEED--QILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIINLHEMLG----- 86 (267)
Q Consensus 14 kG~WT~EED--e~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p~ikkg~WT~EED~~Li~lv~~~G----- 86 (267)
+.+|.+.+. +.|..+.+..|. ....++. +++ |.-. =-+|..+|.++|
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~g-k~lD-----------------------L~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IGG-CELD-----------------------LACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ETT-EECC-----------------------HHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CCC-Eecc-----------------------HHHHHHHHHHcCcHHHh
Confidence 467887775 567777788786 5555553 332 2211 134778888888
Q ss_pred ---CcHHHHhhhC--CCC---CHHHHHHHHHHhhhH
Q 024492 87 ---NRWSAIAARL--PGR---TDNEIKNVWHTHLKK 114 (267)
Q Consensus 87 ---~kWs~IA~~l--pgR---T~~q~knRW~~llrk 114 (267)
+.|.+||..| |.- ....+|+.|..+|-+
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 4699999988 322 246789999888854
No 122
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=40.81 E-value=43 Score=22.59 Aligned_cols=33 Identities=12% Similarity=-0.031 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHH
Q 024492 73 EEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKN 106 (267)
Q Consensus 73 EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~kn 106 (267)
-|.+.|.++...++++.++.|+.| |=+...+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 477888999999999999999988 666555443
No 123
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=40.08 E-value=52 Score=24.93 Aligned_cols=41 Identities=10% Similarity=0.081 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 73 EEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 73 EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
+.+..++.++-..|-...+||..+ |-+...|+.+.+..+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345667777777888999999999 99999998887765544
No 124
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=39.79 E-value=42 Score=25.49 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHH
Q 024492 71 TREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKN 106 (267)
Q Consensus 71 T~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~kn 106 (267)
+..-+..|..+....|..|..+|.+| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66677788888899999999999999 777766644
No 125
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=39.45 E-value=38 Score=27.28 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=28.9
Q ss_pred HHHHHHHHcC--------CcHHHHhhhC--CCC---CHHHHHHHHHHhhhH
Q 024492 77 TIINLHEMLG--------NRWSAIAARL--PGR---TDNEIKNVWHTHLKK 114 (267)
Q Consensus 77 ~Li~lv~~~G--------~kWs~IA~~l--pgR---T~~q~knRW~~llrk 114 (267)
+|..+|.+.| +.|.+||..| +.. ....+|..|..+|-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 4777788887 4699999988 222 256899999988866
No 126
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=39.29 E-value=9 Score=29.20 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=29.2
Q ss_pred HHHHHHHHhCC-------CCccccchhhcccc----cccccccchhcccCCC
Q 024492 24 ILINYVKLYGH-------GNWRALPKQAGLLR----CGKSCRLRWINYLRPD 64 (267)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~IA~~l~~~R----t~kqCr~Rw~n~L~p~ 64 (267)
+|..+|.+.|. ..|..|+..++... .+.+++..|.++|.|-
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 46667776653 47999999988633 2356788888888773
No 127
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=38.88 E-value=49 Score=21.36 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 75 EDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 75 D~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
+..++.+ -..|-.-.+||..| |-+...|+.+.+..+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3455566 36677889999999 99999999988876654
No 128
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=38.68 E-value=16 Score=27.10 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=26.4
Q ss_pred HHHHHHHHcC--------CcHHHHhhhCCC---C-CHHHHHHHHHHhhhH
Q 024492 77 TIINLHEMLG--------NRWSAIAARLPG---R-TDNEIKNVWHTHLKK 114 (267)
Q Consensus 77 ~Li~lv~~~G--------~kWs~IA~~lpg---R-T~~q~knRW~~llrk 114 (267)
.|..+|.+.| +.|.+||..|.- - ...++|+.|..+|-+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 4777777776 469999998722 1 245778888776654
No 129
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=38.44 E-value=54 Score=25.40 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhHHHh
Q 024492 73 EEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKKRLK 117 (267)
Q Consensus 73 EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk~~~ 117 (267)
+-|..|+.+....| -.+.+||+.+ |-+...|..|.+.+.+..+-
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 45667778777766 5799999999 88999999999988766543
No 130
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=38.09 E-value=22 Score=26.94 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=28.2
Q ss_pred HHHHHHHHcC--------CcHHHHhhhCC--CC---CHHHHHHHHHHhhhH
Q 024492 77 TIINLHEMLG--------NRWSAIAARLP--GR---TDNEIKNVWHTHLKK 114 (267)
Q Consensus 77 ~Li~lv~~~G--------~kWs~IA~~lp--gR---T~~q~knRW~~llrk 114 (267)
.|..+|.++| +.|.+||..|. .. ...++|+.|..+|-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4777778887 47999999872 21 246789999988865
No 131
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=37.71 E-value=50 Score=26.79 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 74 EEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 74 ED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
.+..++.++-..|-...+||..| |-+...|+.+.+..+++
T Consensus 191 ~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 191 REKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 33444445445677899999999 99999998887765544
No 132
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=37.43 E-value=1.4e+02 Score=23.08 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhccc------CCCCC----CCCCCHHHHHHHHHHHHH
Q 024492 15 GPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL------RPDIK----RGNFTREEEDTIINLHEM 84 (267)
Q Consensus 15 G~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L------~p~ik----kg~WT~EED~~Li~lv~~ 84 (267)
.+.|.++-..++.++. .|. ....||+.++. + .+...||.+.. .+... ....+.++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lgi--s-~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLRV--S-HGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHTC--C-SHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--C-HHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4788888888888874 453 77889998873 3 33344555432 22211 235788888888888876
Q ss_pred cC-CcHHHHhhhC
Q 024492 85 LG-NRWSAIAARL 96 (267)
Q Consensus 85 ~G-~kWs~IA~~l 96 (267)
.. -.-.+|+..|
T Consensus 99 ~~~~s~~~i~~~l 111 (159)
T 2k27_A 99 NPTMFAWEIRDRL 111 (159)
T ss_dssp CSSSCHHHHHHHH
T ss_pred CccchHHHHHHHH
Confidence 53 2233454443
No 133
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=36.74 E-value=52 Score=23.86 Aligned_cols=34 Identities=12% Similarity=0.011 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHH
Q 024492 73 EEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNV 107 (267)
Q Consensus 73 EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knR 107 (267)
-|.+.|.++++.+|++.++.|+.| |=+...+..|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 477888899999999999999999 7777666544
No 134
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=36.70 E-value=43 Score=25.37 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=23.8
Q ss_pred HcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 84 MLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 84 ~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
..|-...+||..| |-+...|+++.+..+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3566789999999 89999998888765544
No 135
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=35.97 E-value=21 Score=28.19 Aligned_cols=30 Identities=20% Similarity=0.120 Sum_probs=24.0
Q ss_pred HcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 84 MLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 84 ~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
..|-...+||..| |-+...|+++.+..+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3466788999999 89999999988876654
No 136
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=35.64 E-value=42 Score=25.91 Aligned_cols=31 Identities=26% Similarity=0.571 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHH
Q 024492 75 EDTIINLHEMLGNRWSAIAARLPGRTDNEIKN 106 (267)
Q Consensus 75 D~~Li~lv~~~G~kWs~IA~~lpgRT~~q~kn 106 (267)
|..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4577888899999999999999 777776643
No 137
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=35.60 E-value=46 Score=25.82 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=26.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHH
Q 024492 65 IKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKN 106 (267)
Q Consensus 65 ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~kn 106 (267)
+....=|.+ .|..+....|..|..+|..| |=+..+|..
T Consensus 17 ~~~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 17 ILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp GGGSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred hccCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 333344444 56667889999999999999 766666543
No 138
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=34.97 E-value=8.4 Score=30.03 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=28.0
Q ss_pred HHHHHHHHhCC-------CCccccchhhccccc---ccccccchhcccCC
Q 024492 24 ILINYVKLYGH-------GNWRALPKQAGLLRC---GKSCRLRWINYLRP 63 (267)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~IA~~l~~~Rt---~kqCr~Rw~n~L~p 63 (267)
+|..+|.+.|. +.|..|+..++.... +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777764 479999999886332 34567777777755
No 139
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=34.84 E-value=44 Score=25.89 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=27.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHH
Q 024492 62 RPDIKRGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKN 106 (267)
Q Consensus 62 ~p~ikkg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~kn 106 (267)
.+.+....=|.+ .|..+....|..|..+|..| |=+..+|..
T Consensus 14 ~~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 14 PSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp --CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred CchhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 334444445544 56667889999999999999 777666543
No 140
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=34.01 E-value=1.5e+02 Score=22.48 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=48.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 024492 14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINY------LRPDIK----RGNFTREEEDTIINLHE 83 (267)
Q Consensus 14 kG~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~------L~p~ik----kg~WT~EED~~Li~lv~ 83 (267)
..+.|.++-..++.++. .|. .-..||+.++. + .+...||.+. +.+... ....+.+..+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lgi--s-~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLRV--S-HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--C-HHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--C-HHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34789888888888874 453 77889998873 3 3333445432 223222 23478888888888887
Q ss_pred HcC-CcHHHHhhhC
Q 024492 84 MLG-NRWSAIAARL 96 (267)
Q Consensus 84 ~~G-~kWs~IA~~l 96 (267)
+.+ -.-.+|+..|
T Consensus 105 ~~~~~s~~~i~~~l 118 (149)
T 1k78_A 105 QNPTMFAWEIRDRL 118 (149)
T ss_dssp HCTTCCHHHHHHHH
T ss_pred hCcchhHHHHHHHH
Confidence 654 2234555544
No 141
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=33.51 E-value=8.8 Score=30.32 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=28.0
Q ss_pred HHHHHHHHhCC-------CCccccchhhccccc----ccccccchhcccCC
Q 024492 24 ILINYVKLYGH-------GNWRALPKQAGLLRC----GKSCRLRWINYLRP 63 (267)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~IA~~l~~~Rt----~kqCr~Rw~n~L~p 63 (267)
+|..+|.+.|. ..|..|+..++.... +.+++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46667777764 479999999886432 34567778888866
No 142
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=33.26 E-value=43 Score=23.93 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 70 FTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 70 WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
.|+.|-+.| .++ ..|-.-.+||..| |-+...|+.+.+..+++
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 555555555 444 6788889999999 99999999988766554
No 143
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=32.31 E-value=52 Score=26.65 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492 72 REEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116 (267)
Q Consensus 72 ~EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk~~ 116 (267)
.+-|..|+.+....| -.+.+||+.+ |-+...|+.|...+.+..+
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 70 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 356778888887776 5799999999 8999999999988766544
No 144
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=30.71 E-value=85 Score=18.46 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHH
Q 024492 69 NFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVW 108 (267)
Q Consensus 69 ~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW 108 (267)
..+.++-..++.++ .-|-...+||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45667766777766 4577899999999 88888776543
No 145
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=30.50 E-value=67 Score=24.96 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492 73 EEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116 (267)
Q Consensus 73 EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk~~ 116 (267)
+-|..|+.+....| -.+.+||+.+ |-+...|..|...+....+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 44667778777766 5799999999 8999999999988776654
No 146
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=30.40 E-value=1.1e+02 Score=23.39 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHH
Q 024492 67 RGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWH 109 (267)
Q Consensus 67 kg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~ 109 (267)
...+|.|+-..++.++. -|..-.+||+.| |.+...|.+..+
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw~~ 70 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKILG 70 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHH
Confidence 34688999889998885 688889999999 888888766443
No 147
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=28.92 E-value=83 Score=23.87 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 73 EEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 73 EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
+.+..++.++-..|-.-.+||..+ |-+...|+.+.+..+++
T Consensus 25 ~~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 25 DKQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345566777777898999999999 99999999887766543
No 148
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=28.82 E-value=62 Score=24.50 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHH
Q 024492 75 EDTIINLHEMLGNRWSAIAARLPGRTDNEIKN 106 (267)
Q Consensus 75 D~~Li~lv~~~G~kWs~IA~~lpgRT~~q~kn 106 (267)
+..|..+....|..|..+|.+| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4556677788899999999999 777776644
No 149
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=28.52 E-value=1.8e+02 Score=21.48 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccchhhcccccccccccchhcccCC------CCCCCCCCHHHHHHHHHHHHHcCCc
Q 024492 15 GPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYLRP------DIKRGNFTREEEDTIINLHEMLGNR 88 (267)
Q Consensus 15 G~WT~EEDe~L~~~V~~~G~~nW~~IA~~l~~~Rt~kqCr~Rw~n~L~p------~ikkg~WT~EED~~Li~lv~~~G~k 88 (267)
...|.++-..++.++. -|. .-..||+.++. +...+ .||...... .......+.+++..|+.+...-+-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lgi--s~~Tv-~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKISR--SRHCI-RVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--CHHHH-HHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHHH-HHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 4678888877777764 453 77889998873 33333 344433221 1122357888888888874332234
Q ss_pred HHHHhhhCCC--CCHHHHHHHHH
Q 024492 89 WSAIAARLPG--RTDNEIKNVWH 109 (267)
Q Consensus 89 Ws~IA~~lpg--RT~~q~knRW~ 109 (267)
=.+|+..| | -+...|.+..+
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l~ 101 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVIK 101 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHHH
Confidence 57888888 5 56777765444
No 150
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.31 E-value=1.1e+02 Score=22.55 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 67 RGNFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 67 kg~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
....|+.|-+.|.-+ ..|-.-.+||..| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l~--~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLF--AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHH--HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH--HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 456788777766553 3688889999999 88999999988776655
No 151
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.93 E-value=1.4e+02 Score=20.69 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=38.3
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHc--CCc--HHHHhhhCCCCCHHHHHHHHHH
Q 024492 60 YLRPDIKRGNFTREEEDTIINLHEML--GNR--WSAIAARLPGRTDNEIKNVWHT 110 (267)
Q Consensus 60 ~L~p~ikkg~WT~EED~~Li~lv~~~--G~k--Ws~IA~~lpgRT~~q~knRW~~ 110 (267)
.++|...+..||.+.-..|...+... ... =..||..+ |=+..+|+..|.+
T Consensus 5 ~~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqN 58 (76)
T 2dn0_A 5 SSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT-GLSTREVRKWFSD 58 (76)
T ss_dssp CSCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CCChHHhhHHhHH
Confidence 45677778899999999998888653 333 35667877 8999999987765
No 152
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=25.79 E-value=71 Score=23.21 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHH
Q 024492 72 REEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKN 106 (267)
Q Consensus 72 ~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~kn 106 (267)
.-|.+.|.+++++++++.++.|+.| |=+...+..
T Consensus 40 ~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLyr 73 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQR 73 (81)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHH
Confidence 4567788899999999999999998 766665543
No 153
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=24.45 E-value=88 Score=22.09 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHcC----CcHHHHhhhCCCCCHHHHHHHHHHhhhHH
Q 024492 71 TREEEDTIINLHEMLG----NRWSAIAARLPGRTDNEIKNVWHTHLKKR 115 (267)
Q Consensus 71 T~EED~~Li~lv~~~G----~kWs~IA~~lpgRT~~q~knRW~~llrk~ 115 (267)
+.+-|..|+.+....| -.=.+||+.| |-+...|..+-..+.+..
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 5677788999999988 3579999999 788888877766655443
No 154
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=23.48 E-value=1e+02 Score=23.78 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhHHHh
Q 024492 73 EEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKKRLK 117 (267)
Q Consensus 73 EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk~~~ 117 (267)
+-|..|+.+....| -.+.+||+.+ |-+...|..|.+.+.+..+-
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 52 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQF-GVSPETIHVRVEKMKQAGII 52 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHcCCc
Confidence 44667788877776 5799999999 89999999999987766543
No 155
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=23.02 E-value=37 Score=27.32 Aligned_cols=40 Identities=28% Similarity=0.461 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC-------CCccccchhhccccc----ccccccchhcccCC
Q 024492 24 ILINYVKLYGH-------GNWRALPKQAGLLRC----GKSCRLRWINYLRP 63 (267)
Q Consensus 24 ~L~~~V~~~G~-------~nW~~IA~~l~~~Rt----~kqCr~Rw~n~L~p 63 (267)
+|..+|.+.|. ..|..|+..++...+ +.+++..|.++|-|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 46666776664 479999999876332 34567788888876
No 156
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=23.01 E-value=99 Score=24.24 Aligned_cols=44 Identities=7% Similarity=0.028 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhHHHh
Q 024492 73 EEEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKKRLK 117 (267)
Q Consensus 73 EED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk~~~ 117 (267)
+-|..|+.++...| -.+..||+.+ |-+...|..|...+.+..+-
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 54 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERV-ALSPSPCLRRLKQLEDAGIV 54 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 45667777777766 5799999999 88999999999887766543
No 157
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=22.81 E-value=77 Score=24.66 Aligned_cols=41 Identities=15% Similarity=0.070 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 73 EEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 73 EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
+++..++.+....|-.-.+||..| |-+...|+++.+..+++
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~ 136 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAE 136 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344555555556677899999999 99999999988765544
No 158
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=22.13 E-value=1.1e+02 Score=23.17 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHcC-CcHHHHhhhCCCCCHHHHHHHHHHhhhHHH
Q 024492 74 EEDTIINLHEMLG-NRWSAIAARLPGRTDNEIKNVWHTHLKKRL 116 (267)
Q Consensus 74 ED~~Li~lv~~~G-~kWs~IA~~lpgRT~~q~knRW~~llrk~~ 116 (267)
-|..|+.+....| -.+.+||+.+ |-+...|..+...+.+..+
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~ 47 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL-GISETAVRKRVKALEEKGI 47 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 3566777776665 5799999999 9999999999988776654
No 159
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=20.98 E-value=1.5e+02 Score=21.25 Aligned_cols=42 Identities=29% Similarity=0.471 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHcC----CcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 72 REEEDTIINLHEMLG----NRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 72 ~EED~~Li~lv~~~G----~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
.+-|+.|++++...| -.=.+||+.| |-+...|+.+-+.+.+.
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~L-gvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKK 54 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 456788999999988 3579999999 78888888776665443
No 160
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.84 E-value=1.1e+02 Score=25.92 Aligned_cols=43 Identities=23% Similarity=0.180 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHcCCcHHHHhhhCCCCCHHHHHHHHHHhhhH
Q 024492 69 NFTREEEDTIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKK 114 (267)
Q Consensus 69 ~WT~EED~~Li~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~llrk 114 (267)
..++.|- .++.++ ..|-.-.+||..| |.+...|+.|-+..+++
T Consensus 197 ~L~~~er-evl~L~-~~G~s~~EIA~~L-~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 197 ILSEREK-EILRCI-RKGLSSKEIAATL-YISVNTVNRHRQNILEK 239 (258)
T ss_dssp SSCHHHH-HHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4555444 445555 5888999999999 99999999988876654
Done!