BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024494
         (267 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q68EL6|NFIL3_DANRE Nuclear factor interleukin-3-regulated protein OS=Danio rerio
           GN=nfil3 PE=2 SV=1
          Length = 462

 Score = 31.6 bits (70), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 13/111 (11%)

Query: 145 YVIFCAPPSRSLDYPGDVRLAALSWNGEGSFLFTSSSAIYDCSDNGACDEDSPVVPIGRS 204
           Y  F +P +    YP D+    L+ +       +  SA+ D SD+    + SP++ I RS
Sbjct: 139 YQDFMSPSATKDSYPSDLEPTRLTSSCISVIKHSPHSALSDGSDSSTVTQGSPLINISRS 198

Query: 205 PRTDVLLKAEKVILEFGGCVLRLAGLYISLCYLVEKFQGLPLLLKSPGIFS 255
           P +   +K E   LE G    R +   IS   L   +   P     PG FS
Sbjct: 199 PDS---IKQEP--LETG----RYSKERISPYELYRNYLSSPF----PGNFS 236


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,178,259
Number of Sequences: 539616
Number of extensions: 4094177
Number of successful extensions: 10338
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10323
Number of HSP's gapped (non-prelim): 13
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)