Query 024496
Match_columns 267
No_of_seqs 104 out of 1762
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:01:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 1.6E-53 3.4E-58 380.9 20.9 225 13-265 1-226 (339)
2 COG1062 AdhC Zn-dependent alco 100.0 2.6E-49 5.7E-54 348.3 20.0 239 14-256 1-239 (366)
3 KOG0022 Alcohol dehydrogenase, 100.0 2.3E-48 5E-53 337.8 20.5 245 9-256 1-246 (375)
4 KOG0023 Alcohol dehydrogenase, 100.0 3.9E-48 8.4E-53 337.6 19.1 239 7-265 1-243 (360)
5 KOG0024 Sorbitol dehydrogenase 100.0 3.7E-45 8.1E-50 319.6 18.1 218 14-256 3-223 (354)
6 PLN02740 Alcohol dehydrogenase 100.0 2E-41 4.4E-46 312.9 24.0 246 9-256 4-252 (381)
7 TIGR02818 adh_III_F_hyde S-(hy 100.0 6.2E-41 1.4E-45 308.3 25.6 238 16-256 2-239 (368)
8 cd08300 alcohol_DH_class_III c 100.0 4.4E-40 9.5E-45 302.5 25.5 240 14-256 1-240 (368)
9 cd08301 alcohol_DH_plants Plan 100.0 9.5E-40 2E-44 300.2 26.7 240 14-256 1-241 (369)
10 cd08281 liver_ADH_like1 Zinc-d 100.0 4E-40 8.6E-45 303.1 23.9 243 16-264 1-251 (371)
11 TIGR03451 mycoS_dep_FDH mycoth 100.0 9.1E-40 2E-44 299.3 23.4 234 15-263 1-235 (358)
12 cd08239 THR_DH_like L-threonin 100.0 4.6E-39 1E-43 291.8 23.7 217 16-256 1-217 (339)
13 cd08277 liver_alcohol_DH_like 100.0 1.2E-38 2.7E-43 292.6 26.4 238 14-256 1-238 (365)
14 PRK09880 L-idonate 5-dehydroge 100.0 9.8E-39 2.1E-43 290.8 23.2 220 14-256 3-223 (343)
15 PLN02586 probable cinnamyl alc 100.0 1.6E-38 3.5E-43 291.6 24.4 228 7-256 4-237 (360)
16 PLN02827 Alcohol dehydrogenase 100.0 6.6E-38 1.4E-42 289.4 25.9 238 12-256 9-247 (378)
17 TIGR02819 fdhA_non_GSH formald 100.0 6.2E-38 1.3E-42 290.9 23.5 219 15-253 2-236 (393)
18 TIGR02822 adh_fam_2 zinc-bindi 100.0 2.1E-37 4.5E-42 281.0 23.9 213 18-256 1-218 (329)
19 COG1063 Tdh Threonine dehydrog 100.0 1E-37 2.2E-42 285.4 21.0 220 16-256 1-223 (350)
20 COG0604 Qor NADPH:quinone redu 100.0 1.6E-37 3.4E-42 281.2 20.9 201 16-266 1-204 (326)
21 cd08299 alcohol_DH_class_I_II_ 100.0 1.4E-36 3E-41 280.0 26.3 243 10-256 2-244 (373)
22 PLN02178 cinnamyl-alcohol dehy 100.0 3.9E-36 8.5E-41 277.3 24.7 217 18-256 9-232 (375)
23 cd08230 glucose_DH Glucose deh 100.0 5.9E-36 1.3E-40 273.7 23.3 216 16-256 1-227 (355)
24 TIGR03201 dearomat_had 6-hydro 100.0 5.9E-36 1.3E-40 273.2 22.2 211 19-256 2-219 (349)
25 cd05279 Zn_ADH1 Liver alcohol 100.0 1.6E-35 3.5E-40 271.9 24.9 237 16-256 1-237 (365)
26 PLN02514 cinnamyl-alcohol dehy 100.0 2.4E-35 5.2E-40 270.2 25.7 226 13-256 7-234 (357)
27 PRK10309 galactitol-1-phosphat 100.0 1.5E-35 3.3E-40 269.9 23.5 213 16-256 1-214 (347)
28 cd08278 benzyl_alcohol_DH Benz 100.0 9.1E-35 2E-39 267.0 25.0 239 14-256 1-240 (365)
29 PRK10083 putative oxidoreducta 100.0 9.9E-35 2.1E-39 263.1 23.3 214 16-256 1-215 (339)
30 cd08233 butanediol_DH_like (2R 100.0 1.8E-34 3.9E-39 263.1 23.3 221 16-263 1-231 (351)
31 cd08296 CAD_like Cinnamyl alco 100.0 2.7E-34 5.8E-39 260.3 24.1 219 16-262 1-220 (333)
32 cd08231 MDR_TM0436_like Hypoth 100.0 2.9E-34 6.4E-39 262.6 24.6 223 17-256 2-231 (361)
33 cd08285 NADP_ADH NADP(H)-depen 100.0 2.4E-34 5.1E-39 262.3 23.8 222 16-262 1-224 (351)
34 cd08237 ribitol-5-phosphate_DH 100.0 1.3E-34 2.9E-39 263.7 21.3 209 14-252 1-214 (341)
35 cd05278 FDH_like Formaldehyde 100.0 1.6E-33 3.5E-38 255.6 22.8 218 16-256 1-221 (347)
36 KOG1197 Predicted quinone oxid 100.0 1.1E-33 2.5E-38 239.8 18.0 203 10-266 3-208 (336)
37 cd05284 arabinose_DH_like D-ar 100.0 5.3E-33 1.2E-37 251.7 23.1 219 16-256 1-221 (340)
38 cd08256 Zn_ADH2 Alcohol dehydr 100.0 6.5E-33 1.4E-37 252.7 23.5 216 16-256 1-228 (350)
39 cd08283 FDH_like_1 Glutathione 100.0 1.3E-32 2.7E-37 254.7 24.3 233 16-256 1-238 (386)
40 cd08279 Zn_ADH_class_III Class 100.0 1.9E-32 4.2E-37 251.1 24.0 236 16-256 1-236 (363)
41 cd08260 Zn_ADH6 Alcohol dehydr 100.0 5.6E-32 1.2E-36 245.8 25.4 216 16-256 1-218 (345)
42 cd08286 FDH_like_ADH2 formalde 100.0 4.4E-32 9.6E-37 246.5 23.2 217 16-256 1-220 (345)
43 cd08240 6_hydroxyhexanoate_dh_ 100.0 3.3E-32 7.2E-37 247.9 22.3 219 16-256 1-229 (350)
44 cd08246 crotonyl_coA_red croto 100.0 5.8E-32 1.3E-36 250.5 23.7 224 11-256 8-247 (393)
45 PRK09422 ethanol-active dehydr 100.0 1.2E-31 2.7E-36 242.5 24.2 214 16-256 1-216 (338)
46 PRK05396 tdh L-threonine 3-deh 100.0 9.4E-32 2E-36 244.1 22.8 216 16-256 1-217 (341)
47 cd08282 PFDH_like Pseudomonas 100.0 1.6E-31 3.4E-36 246.3 23.9 223 16-256 1-229 (375)
48 cd08259 Zn_ADH5 Alcohol dehydr 100.0 3.4E-31 7.5E-36 238.1 24.6 214 16-255 1-215 (332)
49 PRK13771 putative alcohol dehy 100.0 1.5E-31 3.2E-36 241.7 22.0 213 16-255 1-214 (334)
50 cd08263 Zn_ADH10 Alcohol dehyd 100.0 2.5E-31 5.4E-36 244.0 23.7 239 16-262 1-245 (367)
51 TIGR01751 crot-CoA-red crotony 100.0 5E-31 1.1E-35 244.9 24.6 223 12-256 4-243 (398)
52 cd08261 Zn_ADH7 Alcohol dehydr 100.0 5.4E-31 1.2E-35 238.6 23.1 212 16-256 1-212 (337)
53 cd08298 CAD2 Cinnamyl alcohol 100.0 1.1E-30 2.4E-35 235.5 24.9 215 16-256 1-220 (329)
54 cd08287 FDH_like_ADH3 formalde 100.0 6.7E-31 1.5E-35 238.6 23.1 214 16-256 1-222 (345)
55 cd08264 Zn_ADH_like2 Alcohol d 100.0 7.7E-31 1.7E-35 236.1 23.1 210 16-256 1-212 (325)
56 PLN02702 L-idonate 5-dehydroge 100.0 1.1E-30 2.4E-35 239.5 24.5 219 12-255 14-234 (364)
57 cd05283 CAD1 Cinnamyl alcohol 100.0 1E-30 2.3E-35 237.2 23.8 221 17-256 1-222 (337)
58 cd08238 sorbose_phosphate_red 100.0 8.1E-31 1.8E-35 244.5 23.5 208 14-256 1-241 (410)
59 cd08265 Zn_ADH3 Alcohol dehydr 100.0 8.5E-31 1.8E-35 242.2 23.3 217 14-256 27-257 (384)
60 cd08284 FDH_like_2 Glutathione 100.0 1.1E-30 2.3E-35 236.9 23.0 217 16-256 1-220 (344)
61 cd08235 iditol_2_DH_like L-idi 100.0 1.7E-30 3.6E-35 235.6 23.7 219 16-263 1-224 (343)
62 cd08245 CAD Cinnamyl alcohol d 100.0 3E-30 6.4E-35 232.8 24.1 214 17-256 1-215 (330)
63 cd08254 hydroxyacyl_CoA_DH 6-h 100.0 3.1E-30 6.7E-35 232.7 23.4 217 16-256 1-218 (338)
64 cd08266 Zn_ADH_like1 Alcohol d 100.0 3.3E-30 7.3E-35 231.6 23.3 217 16-256 1-220 (342)
65 cd08242 MDR_like Medium chain 100.0 5.8E-30 1.3E-34 230.0 23.9 207 16-256 1-208 (319)
66 cd05285 sorbitol_DH Sorbitol d 100.0 4.8E-30 1E-34 233.2 23.1 215 18-256 1-216 (343)
67 cd08297 CAD3 Cinnamyl alcohol 100.0 9.1E-30 2E-34 230.8 24.1 216 16-256 1-219 (341)
68 cd08262 Zn_ADH8 Alcohol dehydr 100.0 9.3E-30 2E-34 230.7 23.7 205 16-256 1-215 (341)
69 TIGR01202 bchC 2-desacetyl-2-h 100.0 5.4E-30 1.2E-34 230.3 20.7 192 15-255 1-194 (308)
70 cd08291 ETR_like_1 2-enoyl thi 100.0 6.4E-30 1.4E-34 230.7 20.8 195 16-264 1-203 (324)
71 cd08234 threonine_DH_like L-th 100.0 2.2E-29 4.8E-34 227.3 24.1 213 16-256 1-213 (334)
72 cd08232 idonate-5-DH L-idonate 100.0 1.7E-29 3.6E-34 228.9 23.1 216 20-256 2-219 (339)
73 cd08236 sugar_DH NAD(P)-depend 100.0 1.6E-29 3.5E-34 229.3 23.0 213 16-256 1-213 (343)
74 cd05281 TDH Threonine dehydrog 100.0 1.6E-29 3.4E-34 229.7 22.6 216 16-256 1-217 (341)
75 cd08258 Zn_ADH4 Alcohol dehydr 100.0 2E-29 4.3E-34 226.2 23.0 217 16-261 1-221 (306)
76 TIGR03366 HpnZ_proposed putati 100.0 8.8E-30 1.9E-34 225.9 17.6 167 74-256 1-174 (280)
77 KOG0025 Zn2+-binding dehydroge 100.0 1.6E-29 3.4E-34 218.0 18.2 201 7-257 11-219 (354)
78 cd08292 ETR_like_2 2-enoyl thi 100.0 4.3E-29 9.4E-34 224.1 21.5 193 16-262 1-197 (324)
79 cd08293 PTGR2 Prostaglandin re 100.0 1.3E-28 2.8E-33 223.5 21.6 183 28-263 23-215 (345)
80 TIGR00692 tdh L-threonine 3-de 100.0 1.3E-28 2.9E-33 223.5 21.4 210 22-256 5-215 (340)
81 TIGR02817 adh_fam_1 zinc-bindi 100.0 2.7E-28 5.8E-33 220.4 21.7 191 17-256 1-203 (336)
82 cd08274 MDR9 Medium chain dehy 100.0 7.8E-28 1.7E-32 218.5 23.0 208 16-256 1-230 (350)
83 cd08290 ETR 2-enoyl thioester 100.0 8.4E-28 1.8E-32 217.7 20.3 191 16-256 1-204 (341)
84 cd08294 leukotriene_B4_DH_like 100.0 1.3E-27 2.9E-32 215.1 21.2 187 15-264 2-203 (329)
85 cd08295 double_bond_reductase_ 100.0 1E-27 2.2E-32 217.7 20.5 189 14-256 6-206 (338)
86 PRK10754 quinone oxidoreductas 100.0 3.3E-27 7.1E-32 212.7 21.6 191 15-256 1-194 (327)
87 cd05188 MDR Medium chain reduc 100.0 2.3E-27 4.9E-32 206.5 19.2 187 42-256 1-187 (271)
88 cd08276 MDR7 Medium chain dehy 100.0 1.7E-26 3.7E-31 207.7 25.0 211 16-256 1-213 (336)
89 cd05280 MDR_yhdh_yhfp Yhdh and 100.0 1.1E-26 2.3E-31 208.5 23.5 194 16-256 1-200 (325)
90 PLN03154 putative allyl alcoho 100.0 9.9E-27 2.1E-31 212.6 22.8 190 12-256 5-213 (348)
91 TIGR02825 B4_12hDH leukotriene 100.0 9.4E-27 2E-31 210.1 22.0 168 28-256 19-192 (325)
92 PTZ00354 alcohol dehydrogenase 100.0 1.1E-26 2.3E-31 209.0 21.4 191 15-256 1-194 (334)
93 cd08250 Mgc45594_like Mgc45594 99.9 2.2E-26 4.8E-31 207.3 21.7 188 15-256 1-193 (329)
94 cd08249 enoyl_reductase_like e 99.9 7.5E-27 1.6E-31 212.2 18.2 199 16-262 1-211 (339)
95 cd08244 MDR_enoyl_red Possible 99.9 3.7E-26 8E-31 204.9 22.1 192 16-256 1-196 (324)
96 cd08248 RTN4I1 Human Reticulon 99.9 1.9E-26 4.2E-31 209.4 20.0 193 16-256 1-215 (350)
97 cd08243 quinone_oxidoreductase 99.9 4.9E-26 1.1E-30 203.2 22.1 191 16-254 1-194 (320)
98 cd08289 MDR_yhfp_like Yhfp put 99.9 6.6E-26 1.4E-30 203.8 22.8 194 16-256 1-200 (326)
99 TIGR02823 oxido_YhdH putative 99.9 1.3E-25 2.9E-30 201.7 23.6 193 17-256 1-199 (323)
100 cd08252 AL_MDR Arginate lyase 99.9 1.1E-25 2.4E-30 203.2 22.5 192 16-256 1-204 (336)
101 cd08288 MDR_yhdh Yhdh putative 99.9 1.4E-25 3.1E-30 201.5 23.0 194 16-256 1-200 (324)
102 cd08253 zeta_crystallin Zeta-c 99.9 1.9E-25 4.1E-30 198.9 21.5 195 16-256 1-198 (325)
103 cd08270 MDR4 Medium chain dehy 99.9 3.8E-25 8.3E-30 196.9 21.6 181 16-254 1-184 (305)
104 cd08247 AST1_like AST1 is a cy 99.9 5.9E-25 1.3E-29 200.4 22.6 195 16-256 1-206 (352)
105 cd05282 ETR_like 2-enoyl thioe 99.9 3E-25 6.6E-30 198.9 20.2 178 28-256 14-192 (323)
106 cd05276 p53_inducible_oxidored 99.9 4.6E-25 1E-29 195.9 20.4 190 16-256 1-193 (323)
107 cd08269 Zn_ADH9 Alcohol dehydr 99.9 5.2E-25 1.1E-29 196.5 20.5 180 23-256 3-183 (312)
108 KOG1198 Zinc-binding oxidoredu 99.9 2.1E-25 4.5E-30 203.0 17.5 186 28-265 20-218 (347)
109 cd08271 MDR5 Medium chain dehy 99.9 1.4E-24 3E-29 194.2 22.2 191 16-256 1-194 (325)
110 cd08272 MDR6 Medium chain dehy 99.9 1.6E-24 3.4E-29 193.5 20.9 194 16-256 1-197 (326)
111 cd08273 MDR8 Medium chain dehy 99.9 3.3E-24 7.3E-29 192.9 21.9 187 17-256 2-191 (331)
112 cd08268 MDR2 Medium chain dehy 99.9 5.4E-24 1.2E-28 190.0 22.0 195 16-256 1-198 (328)
113 cd05286 QOR2 Quinone oxidoredu 99.9 4.8E-24 1E-28 189.1 21.5 187 17-256 1-190 (320)
114 cd05289 MDR_like_2 alcohol deh 99.9 1.6E-23 3.5E-28 185.3 21.2 193 16-256 1-197 (309)
115 TIGR02824 quinone_pig3 putativ 99.9 1.6E-23 3.6E-28 186.6 21.0 190 16-256 1-193 (325)
116 cd08251 polyketide_synthase po 99.9 2E-23 4.3E-28 184.5 20.0 172 35-256 2-174 (303)
117 PF08240 ADH_N: Alcohol dehydr 99.9 2.7E-24 5.9E-29 164.8 9.8 108 40-171 1-109 (109)
118 cd08241 QOR1 Quinone oxidoredu 99.9 1.1E-22 2.5E-27 180.8 21.4 189 16-256 1-193 (323)
119 cd05288 PGDH Prostaglandin deh 99.9 9.6E-23 2.1E-27 183.4 20.7 185 17-256 3-200 (329)
120 cd08267 MDR1 Medium chain dehy 99.9 1.1E-22 2.5E-27 181.3 20.5 180 29-256 15-196 (319)
121 COG2130 Putative NADP-dependen 99.9 7.4E-23 1.6E-27 178.2 16.6 180 28-265 27-212 (340)
122 cd05195 enoyl_red enoyl reduct 99.9 2.7E-22 5.9E-27 175.3 18.3 161 41-256 1-164 (293)
123 cd08275 MDR3 Medium chain dehy 99.9 1.1E-21 2.4E-26 176.2 22.2 188 17-256 1-192 (337)
124 smart00829 PKS_ER Enoylreducta 99.9 1E-21 2.3E-26 171.6 17.5 156 45-256 2-160 (288)
125 cd08255 2-desacetyl-2-hydroxye 99.8 1.9E-18 4.1E-23 152.1 15.6 132 70-255 19-151 (277)
126 KOG1196 Predicted NAD-dependen 99.8 5.6E-17 1.2E-21 141.2 18.5 170 31-256 27-208 (343)
127 KOG1202 Animal-type fatty acid 99.6 5.8E-15 1.2E-19 146.0 8.5 162 39-262 1443-1614(2376)
128 PF00107 ADH_zinc_N: Zinc-bind 98.3 1.1E-06 2.4E-11 68.5 4.8 50 213-265 1-50 (130)
129 PRK09424 pntA NAD(P) transhydr 98.2 9.4E-06 2E-10 77.7 9.6 56 200-256 162-218 (509)
130 TIGR01035 hemA glutamyl-tRNA r 97.9 3.6E-07 7.8E-12 85.8 -5.2 133 74-248 89-226 (417)
131 cd00401 AdoHcyase S-adenosyl-L 97.5 0.00037 8.1E-09 65.2 8.4 58 192-250 190-248 (413)
132 PRK00045 hemA glutamyl-tRNA re 97.5 2.4E-06 5.2E-11 80.4 -6.6 135 74-249 91-229 (423)
133 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.0004 8.7E-09 62.8 5.4 85 167-253 140-228 (311)
134 TIGR00561 pntA NAD(P) transhyd 97.1 0.0015 3.2E-08 62.8 7.8 50 201-251 162-211 (511)
135 PRK00517 prmA ribosomal protei 96.9 0.0061 1.3E-07 53.2 9.1 83 156-245 78-160 (250)
136 PRK12771 putative glutamate sy 96.9 0.0029 6.2E-08 61.8 7.5 55 199-254 133-208 (564)
137 PF01488 Shikimate_DH: Shikima 96.8 0.0053 1.2E-07 48.5 7.0 48 199-246 8-56 (135)
138 PRK08306 dipicolinate synthase 96.7 0.012 2.7E-07 52.7 9.6 47 202-249 151-197 (296)
139 PRK05476 S-adenosyl-L-homocyst 96.7 0.0075 1.6E-07 56.8 8.1 59 190-249 198-257 (425)
140 TIGR00936 ahcY adenosylhomocys 96.6 0.0097 2.1E-07 55.7 8.1 56 192-248 183-239 (406)
141 PLN02494 adenosylhomocysteinas 96.2 0.022 4.7E-07 54.2 8.1 58 191-249 241-299 (477)
142 PRK04148 hypothetical protein; 95.9 0.041 8.9E-07 43.5 7.1 54 198-253 12-65 (134)
143 PF01262 AlaDh_PNT_C: Alanine 95.8 0.026 5.7E-07 46.2 6.3 48 203-251 20-67 (168)
144 PRK03369 murD UDP-N-acetylmura 95.6 0.038 8.2E-07 53.1 7.5 50 199-249 8-57 (488)
145 PRK12549 shikimate 5-dehydroge 95.6 0.073 1.6E-06 47.5 8.6 44 201-244 125-168 (284)
146 TIGR02853 spore_dpaA dipicolin 95.5 0.088 1.9E-06 47.1 8.9 46 202-248 150-195 (287)
147 PRK12550 shikimate 5-dehydroge 95.5 0.084 1.8E-06 46.8 8.6 47 198-244 117-163 (272)
148 TIGR00518 alaDH alanine dehydr 95.2 0.063 1.4E-06 49.8 7.2 46 202-248 166-212 (370)
149 PTZ00075 Adenosylhomocysteinas 95.2 0.17 3.6E-06 48.3 9.9 56 192-248 242-298 (476)
150 PRK11873 arsM arsenite S-adeno 95.2 0.061 1.3E-06 47.3 6.7 48 197-245 72-120 (272)
151 PRK08017 oxidoreductase; Provi 95.1 0.078 1.7E-06 45.6 7.2 47 204-251 3-50 (256)
152 PRK14027 quinate/shikimate deh 95.1 0.099 2.2E-06 46.6 7.9 44 201-244 125-168 (283)
153 cd01075 NAD_bind_Leu_Phe_Val_D 95.1 0.092 2E-06 44.3 7.3 54 200-255 25-79 (200)
154 TIGR01809 Shik-DH-AROM shikima 95.0 0.072 1.6E-06 47.5 6.6 43 202-244 124-166 (282)
155 COG0169 AroE Shikimate 5-dehyd 94.9 0.081 1.7E-06 47.2 6.7 46 200-245 123-168 (283)
156 PRK05993 short chain dehydroge 94.8 0.073 1.6E-06 46.7 6.3 47 202-249 3-50 (277)
157 PRK00258 aroE shikimate 5-dehy 94.8 0.16 3.6E-06 45.0 8.4 44 201-244 121-164 (278)
158 PRK08324 short chain dehydroge 94.7 0.068 1.5E-06 53.4 6.4 77 156-244 386-463 (681)
159 PRK05786 fabG 3-ketoacyl-(acyl 94.6 0.11 2.3E-06 44.2 6.6 41 202-243 4-45 (238)
160 PF02826 2-Hacid_dh_C: D-isome 94.6 0.11 2.4E-06 42.9 6.4 46 201-247 34-79 (178)
161 TIGR01318 gltD_gamma_fam gluta 94.2 0.16 3.5E-06 48.5 7.4 52 202-254 140-212 (467)
162 PRK05693 short chain dehydroge 94.2 0.13 2.8E-06 45.0 6.3 45 204-249 2-47 (274)
163 COG0300 DltE Short-chain dehyd 94.1 0.17 3.8E-06 44.6 6.8 44 200-244 3-47 (265)
164 PRK12548 shikimate 5-dehydroge 94.1 0.24 5.2E-06 44.2 7.9 37 201-237 124-160 (289)
165 PRK12749 quinate/shikimate deh 93.9 0.24 5.3E-06 44.3 7.6 37 201-237 122-158 (288)
166 COG4221 Short-chain alcohol de 93.9 0.18 3.9E-06 43.8 6.4 45 202-247 5-51 (246)
167 cd01078 NAD_bind_H4MPT_DH NADP 93.9 0.38 8.2E-06 40.1 8.3 43 201-244 26-69 (194)
168 cd01080 NAD_bind_m-THF_DH_Cycl 93.9 0.5 1.1E-05 38.8 8.7 71 181-254 22-94 (168)
169 cd01065 NAD_bind_Shikimate_DH 93.9 0.47 1E-05 37.6 8.5 52 197-248 12-65 (155)
170 PRK06949 short chain dehydroge 93.8 0.2 4.3E-06 43.1 6.7 42 201-243 7-49 (258)
171 COG3967 DltE Short-chain dehyd 93.8 0.19 4E-06 42.7 6.1 43 202-245 4-47 (245)
172 PRK05872 short chain dehydroge 93.5 0.23 4.9E-06 44.2 6.7 45 202-247 8-54 (296)
173 PF02254 TrkA_N: TrkA-N domain 93.5 0.24 5.3E-06 37.3 6.0 49 206-256 1-49 (116)
174 PRK07814 short chain dehydroge 93.5 0.24 5.1E-06 43.0 6.7 41 202-243 9-50 (263)
175 PRK07231 fabG 3-ketoacyl-(acyl 93.5 0.23 5E-06 42.3 6.5 41 202-243 4-45 (251)
176 PF13823 ADH_N_assoc: Alcohol 93.4 0.094 2E-06 28.3 2.4 22 16-38 1-22 (23)
177 PRK06057 short chain dehydroge 93.4 0.25 5.4E-06 42.6 6.6 45 202-247 6-52 (255)
178 PRK08339 short chain dehydroge 93.3 0.25 5.4E-06 43.1 6.6 41 202-243 7-48 (263)
179 PRK06200 2,3-dihydroxy-2,3-dih 93.3 0.26 5.7E-06 42.6 6.7 42 202-244 5-47 (263)
180 PRK07060 short chain dehydroge 93.3 0.33 7.1E-06 41.3 7.2 46 202-248 8-55 (245)
181 PRK12769 putative oxidoreducta 93.3 0.23 4.9E-06 49.5 6.9 35 202-237 326-360 (654)
182 PRK12829 short chain dehydroge 93.3 0.32 6.8E-06 41.9 7.1 46 198-244 6-52 (264)
183 PRK12809 putative oxidoreducta 93.3 0.25 5.4E-06 49.1 7.1 52 202-254 309-381 (639)
184 PF11017 DUF2855: Protein of u 93.3 1.5 3.2E-05 39.7 11.3 96 156-256 90-191 (314)
185 PF00670 AdoHcyase_NAD: S-aden 93.2 0.72 1.6E-05 37.7 8.5 55 194-249 13-68 (162)
186 cd05311 NAD_bind_2_malic_enz N 93.2 0.48 1E-05 40.8 8.0 37 200-236 22-60 (226)
187 PRK07523 gluconate 5-dehydroge 93.2 0.28 6.1E-06 42.2 6.7 40 202-242 9-49 (255)
188 PRK08217 fabG 3-ketoacyl-(acyl 93.2 0.3 6.4E-06 41.7 6.7 41 202-243 4-45 (253)
189 PRK06182 short chain dehydroge 93.2 0.36 7.8E-06 42.1 7.3 46 202-248 2-48 (273)
190 PRK05867 short chain dehydroge 93.1 0.3 6.4E-06 42.1 6.7 41 202-243 8-49 (253)
191 PRK13940 glutamyl-tRNA reducta 93.1 0.53 1.2E-05 44.3 8.6 50 198-247 176-226 (414)
192 PRK07326 short chain dehydroge 93.1 0.3 6.5E-06 41.4 6.5 41 202-243 5-46 (237)
193 TIGR03325 BphB_TodD cis-2,3-di 93.0 0.3 6.4E-06 42.3 6.5 43 202-245 4-47 (262)
194 PRK05866 short chain dehydroge 92.9 0.32 6.9E-06 43.3 6.7 41 202-243 39-80 (293)
195 PLN02780 ketoreductase/ oxidor 92.9 0.27 5.9E-06 44.4 6.3 41 202-243 52-93 (320)
196 PLN03209 translocon at the inn 92.9 0.27 5.8E-06 48.1 6.5 47 196-243 73-120 (576)
197 PRK07831 short chain dehydroge 92.9 0.32 7E-06 42.1 6.6 43 200-243 14-58 (262)
198 PF02737 3HCDH_N: 3-hydroxyacy 92.8 0.35 7.6E-06 40.1 6.4 38 205-243 1-38 (180)
199 PRK06139 short chain dehydroge 92.8 0.3 6.6E-06 44.4 6.5 41 202-243 6-47 (330)
200 PRK07890 short chain dehydroge 92.8 0.35 7.6E-06 41.5 6.6 42 201-243 3-45 (258)
201 PRK07576 short chain dehydroge 92.8 0.36 7.8E-06 42.0 6.7 41 201-242 7-48 (264)
202 TIGR00507 aroE shikimate 5-deh 92.7 0.62 1.3E-05 41.1 8.2 43 200-243 114-156 (270)
203 PRK12828 short chain dehydroge 92.7 0.33 7.2E-06 40.9 6.3 38 202-240 6-44 (239)
204 PRK07062 short chain dehydroge 92.7 0.35 7.6E-06 41.8 6.6 41 202-243 7-48 (265)
205 PRK06500 short chain dehydroge 92.6 0.38 8.3E-06 41.0 6.6 46 202-248 5-52 (249)
206 PRK07035 short chain dehydroge 92.6 0.4 8.6E-06 41.1 6.7 41 202-243 7-48 (252)
207 PRK06180 short chain dehydroge 92.6 0.41 8.9E-06 41.9 6.9 43 202-245 3-46 (277)
208 PRK08703 short chain dehydroge 92.6 0.37 8E-06 41.0 6.4 41 202-243 5-46 (239)
209 PRK07063 short chain dehydroge 92.6 0.39 8.4E-06 41.5 6.6 41 202-243 6-47 (260)
210 PRK08213 gluconate 5-dehydroge 92.5 0.41 8.9E-06 41.3 6.7 41 202-243 11-52 (259)
211 PRK07825 short chain dehydroge 92.5 0.4 8.7E-06 41.7 6.7 41 202-243 4-45 (273)
212 PRK09072 short chain dehydroge 92.5 0.4 8.7E-06 41.5 6.6 42 202-244 4-46 (263)
213 PRK08265 short chain dehydroge 92.3 0.43 9.3E-06 41.4 6.6 45 202-247 5-51 (261)
214 PRK09291 short chain dehydroge 92.3 0.43 9.3E-06 40.9 6.6 40 203-243 2-42 (257)
215 KOG1207 Diacetyl reductase/L-x 92.3 0.43 9.3E-06 39.6 6.0 49 202-251 6-55 (245)
216 PRK06194 hypothetical protein; 92.3 0.42 9.2E-06 41.9 6.6 41 202-243 5-46 (287)
217 PRK07478 short chain dehydroge 92.3 0.44 9.6E-06 40.9 6.6 41 202-243 5-46 (254)
218 PRK05854 short chain dehydroge 92.2 0.43 9.3E-06 42.9 6.7 41 202-243 13-54 (313)
219 PRK07677 short chain dehydroge 92.2 0.43 9.3E-06 41.0 6.4 40 203-243 1-41 (252)
220 PRK11705 cyclopropane fatty ac 92.2 0.62 1.3E-05 43.4 7.8 57 188-246 153-209 (383)
221 PRK06125 short chain dehydroge 92.2 0.46 9.9E-06 41.0 6.6 41 202-243 6-47 (259)
222 COG1748 LYS9 Saccharopine dehy 92.2 0.35 7.5E-06 45.1 6.0 44 204-247 2-45 (389)
223 PRK06841 short chain dehydroge 92.2 0.57 1.2E-05 40.1 7.2 43 202-245 14-57 (255)
224 PRK06172 short chain dehydroge 92.1 0.47 1E-05 40.7 6.6 40 202-242 6-46 (253)
225 PRK08945 putative oxoacyl-(acy 92.1 0.47 1E-05 40.6 6.6 44 199-243 8-52 (247)
226 PRK07454 short chain dehydroge 92.1 0.54 1.2E-05 40.0 6.9 42 201-243 4-46 (241)
227 PRK06101 short chain dehydroge 92.1 0.44 9.6E-06 40.7 6.4 42 204-246 2-44 (240)
228 PRK06196 oxidoreductase; Provi 92.1 0.45 9.8E-06 42.6 6.6 41 202-243 25-66 (315)
229 PRK09186 flagellin modificatio 92.0 0.48 1E-05 40.6 6.5 41 202-243 3-44 (256)
230 PRK12939 short chain dehydroge 92.0 0.51 1.1E-05 40.1 6.7 42 201-243 5-47 (250)
231 PRK13394 3-hydroxybutyrate deh 92.0 0.51 1.1E-05 40.6 6.6 41 202-243 6-47 (262)
232 PRK12429 3-hydroxybutyrate deh 91.9 0.53 1.1E-05 40.3 6.6 41 202-243 3-44 (258)
233 PRK08085 gluconate 5-dehydroge 91.8 0.56 1.2E-05 40.3 6.7 41 202-243 8-49 (254)
234 PRK05875 short chain dehydroge 91.8 0.55 1.2E-05 40.9 6.6 40 202-242 6-46 (276)
235 TIGR00406 prmA ribosomal prote 91.7 1.3 2.8E-05 39.5 9.0 44 200-245 157-200 (288)
236 PRK09242 tropinone reductase; 91.7 0.57 1.2E-05 40.3 6.7 41 202-243 8-49 (257)
237 PF02558 ApbA: Ketopantoate re 91.7 0.44 9.5E-06 37.7 5.5 42 206-249 1-42 (151)
238 PF13460 NAD_binding_10: NADH( 91.7 0.47 1E-05 38.6 5.8 36 206-242 1-37 (183)
239 PRK01438 murD UDP-N-acetylmura 91.7 0.69 1.5E-05 44.1 7.7 51 201-252 14-69 (480)
240 PRK07109 short chain dehydroge 91.7 0.55 1.2E-05 42.7 6.8 41 202-243 7-48 (334)
241 PRK06124 gluconate 5-dehydroge 91.7 0.59 1.3E-05 40.1 6.7 40 202-242 10-50 (256)
242 PRK07453 protochlorophyllide o 91.6 0.56 1.2E-05 42.1 6.7 41 202-243 5-46 (322)
243 PRK07067 sorbitol dehydrogenas 91.6 0.59 1.3E-05 40.2 6.6 42 202-244 5-47 (257)
244 PRK08177 short chain dehydroge 91.5 0.6 1.3E-05 39.4 6.4 42 204-246 2-44 (225)
245 PRK00377 cbiT cobalt-precorrin 91.5 0.67 1.5E-05 38.8 6.6 48 196-244 34-82 (198)
246 PRK06181 short chain dehydroge 91.4 0.61 1.3E-05 40.2 6.5 39 203-242 1-40 (263)
247 PRK06138 short chain dehydroge 91.4 0.63 1.4E-05 39.7 6.5 41 202-243 4-45 (252)
248 TIGR01963 PHB_DH 3-hydroxybuty 91.4 0.58 1.3E-05 39.9 6.3 41 203-244 1-42 (255)
249 PRK07774 short chain dehydroge 91.3 0.68 1.5E-05 39.5 6.7 40 202-242 5-45 (250)
250 PRK06197 short chain dehydroge 91.3 0.55 1.2E-05 41.8 6.3 41 201-242 14-55 (306)
251 PRK08628 short chain dehydroge 91.3 0.54 1.2E-05 40.4 6.1 41 202-243 6-47 (258)
252 PRK05876 short chain dehydroge 91.3 0.64 1.4E-05 40.8 6.6 42 201-243 4-46 (275)
253 PRK08643 acetoin reductase; Va 91.3 0.63 1.4E-05 39.9 6.5 40 203-243 2-42 (256)
254 PLN00203 glutamyl-tRNA reducta 91.3 0.68 1.5E-05 44.9 7.2 44 202-245 265-308 (519)
255 PRK08264 short chain dehydroge 91.3 0.48 1E-05 40.1 5.7 40 202-241 5-45 (238)
256 PRK05717 oxidoreductase; Valid 91.3 0.68 1.5E-05 39.8 6.6 40 202-242 9-49 (255)
257 PRK12826 3-ketoacyl-(acyl-carr 91.2 0.62 1.3E-05 39.6 6.3 39 202-241 5-44 (251)
258 COG0373 HemA Glutamyl-tRNA red 91.1 1.4 3.1E-05 41.3 8.9 54 195-248 170-224 (414)
259 TIGR03206 benzo_BadH 2-hydroxy 91.1 0.74 1.6E-05 39.2 6.7 41 202-243 2-43 (250)
260 PRK05653 fabG 3-ketoacyl-(acyl 91.0 0.74 1.6E-05 38.9 6.6 40 202-242 4-44 (246)
261 PRK10669 putative cation:proto 91.0 0.62 1.3E-05 45.5 6.8 48 204-252 418-465 (558)
262 PRK08267 short chain dehydroge 91.0 0.67 1.5E-05 39.9 6.4 40 204-244 2-42 (260)
263 PF00106 adh_short: short chai 91.0 0.64 1.4E-05 37.0 5.8 40 204-243 1-43 (167)
264 PRK08226 short chain dehydroge 90.9 0.7 1.5E-05 39.9 6.4 41 202-243 5-46 (263)
265 PRK08277 D-mannonate oxidoredu 90.9 0.74 1.6E-05 40.2 6.6 40 202-242 9-49 (278)
266 PRK12742 oxidoreductase; Provi 90.9 0.78 1.7E-05 38.8 6.6 47 202-249 5-54 (237)
267 PRK07904 short chain dehydroge 90.9 0.72 1.6E-05 39.9 6.4 39 200-239 5-45 (253)
268 PRK07024 short chain dehydroge 90.8 0.79 1.7E-05 39.5 6.7 40 203-243 2-42 (257)
269 PRK06914 short chain dehydroge 90.8 0.76 1.7E-05 40.1 6.6 41 202-243 2-43 (280)
270 PRK10538 malonic semialdehyde 90.7 0.78 1.7E-05 39.3 6.4 39 205-244 2-41 (248)
271 PRK08862 short chain dehydroge 90.6 0.84 1.8E-05 39.0 6.5 41 202-243 4-45 (227)
272 PF07991 IlvN: Acetohydroxy ac 90.5 0.94 2E-05 37.0 6.3 47 202-249 3-50 (165)
273 PRK07502 cyclohexadienyl dehyd 90.5 0.77 1.7E-05 41.2 6.5 45 204-248 7-52 (307)
274 PRK12823 benD 1,6-dihydroxycyc 90.5 0.8 1.7E-05 39.4 6.4 37 202-239 7-44 (260)
275 PLN02520 bifunctional 3-dehydr 90.4 0.75 1.6E-05 44.7 6.7 42 202-244 378-419 (529)
276 PRK12384 sorbitol-6-phosphate 90.4 0.87 1.9E-05 39.2 6.5 40 203-243 2-42 (259)
277 PRK07666 fabG 3-ketoacyl-(acyl 90.3 0.96 2.1E-05 38.4 6.7 40 202-242 6-46 (239)
278 PF12847 Methyltransf_18: Meth 90.3 0.93 2E-05 33.6 5.8 42 202-245 1-43 (112)
279 PLN02253 xanthoxin dehydrogena 90.3 0.92 2E-05 39.6 6.7 40 202-242 17-57 (280)
280 PRK01390 murD UDP-N-acetylmura 90.2 0.77 1.7E-05 43.6 6.5 47 202-249 8-54 (460)
281 PRK08261 fabG 3-ketoacyl-(acyl 90.2 0.22 4.7E-06 47.1 2.7 59 197-256 28-92 (450)
282 TIGR01832 kduD 2-deoxy-D-gluco 90.1 1.4 3.1E-05 37.5 7.6 35 202-237 4-39 (248)
283 cd05211 NAD_bind_Glu_Leu_Phe_V 90.1 1.9 4.2E-05 36.9 8.2 48 200-247 20-77 (217)
284 PRK07074 short chain dehydroge 90.1 1 2.2E-05 38.7 6.7 40 203-243 2-42 (257)
285 COG0654 UbiH 2-polyprenyl-6-me 90.1 0.67 1.4E-05 42.9 5.8 49 204-253 3-66 (387)
286 PRK08589 short chain dehydroge 90.0 0.96 2.1E-05 39.5 6.6 35 202-237 5-40 (272)
287 PRK06935 2-deoxy-D-gluconate 3 90.0 0.93 2E-05 39.0 6.4 34 202-236 14-48 (258)
288 PRK06198 short chain dehydroge 90.0 1.1 2.4E-05 38.5 6.8 41 201-241 4-45 (260)
289 PRK07102 short chain dehydroge 90.0 0.93 2E-05 38.6 6.3 39 204-243 2-41 (243)
290 COG0569 TrkA K+ transport syst 89.9 0.76 1.7E-05 39.5 5.7 44 205-249 2-47 (225)
291 PRK00141 murD UDP-N-acetylmura 89.9 1.1 2.5E-05 42.8 7.4 49 201-250 13-62 (473)
292 PF00070 Pyr_redox: Pyridine n 89.9 0.83 1.8E-05 32.2 5.0 32 205-237 1-32 (80)
293 PRK02472 murD UDP-N-acetylmura 89.9 1 2.3E-05 42.4 7.1 47 202-249 4-54 (447)
294 PRK08251 short chain dehydroge 89.9 1 2.3E-05 38.3 6.6 40 203-243 2-42 (248)
295 PRK06113 7-alpha-hydroxysteroi 89.8 1.1 2.4E-05 38.5 6.6 41 202-243 10-51 (255)
296 PRK03562 glutathione-regulated 89.7 0.94 2E-05 44.9 6.9 48 203-251 400-447 (621)
297 PRK06522 2-dehydropantoate 2-r 89.7 1 2.2E-05 39.9 6.5 43 205-248 2-44 (304)
298 COG2518 Pcm Protein-L-isoaspar 89.6 2.2 4.8E-05 36.3 8.1 69 178-251 50-122 (209)
299 PRK07832 short chain dehydroge 89.6 1 2.3E-05 39.2 6.4 38 205-243 2-40 (272)
300 PRK06035 3-hydroxyacyl-CoA deh 89.6 1 2.2E-05 40.1 6.4 39 204-243 4-42 (291)
301 PRK06953 short chain dehydroge 89.4 1.2 2.5E-05 37.5 6.5 44 204-248 2-46 (222)
302 PF03721 UDPG_MGDP_dh_N: UDP-g 89.4 0.86 1.9E-05 38.0 5.4 40 205-245 2-41 (185)
303 PRK07097 gluconate 5-dehydroge 89.3 1.2 2.7E-05 38.5 6.6 41 202-243 9-50 (265)
304 PRK06505 enoyl-(acyl carrier p 89.2 1 2.2E-05 39.5 6.1 36 202-238 6-44 (271)
305 TIGR02469 CbiT precorrin-6Y C5 89.2 1.8 3.8E-05 32.5 6.7 49 195-244 12-60 (124)
306 PRK09260 3-hydroxybutyryl-CoA 89.1 1.1 2.3E-05 39.9 6.2 40 204-244 2-41 (288)
307 PF02353 CMAS: Mycolic acid cy 89.1 0.8 1.7E-05 40.6 5.3 49 194-244 54-102 (273)
308 PRK08340 glucose-1-dehydrogena 89.1 1.1 2.4E-05 38.6 6.2 38 205-243 2-40 (259)
309 PRK03659 glutathione-regulated 89.0 1.1 2.4E-05 44.3 6.7 47 204-251 401-447 (601)
310 PRK07533 enoyl-(acyl carrier p 89.0 1.1 2.4E-05 38.8 6.1 37 202-239 9-48 (258)
311 PRK06482 short chain dehydroge 88.9 1.3 2.9E-05 38.5 6.6 40 204-244 3-43 (276)
312 COG0334 GdhA Glutamate dehydro 88.8 2.6 5.7E-05 39.4 8.6 58 178-238 183-241 (411)
313 CHL00194 ycf39 Ycf39; Provisio 88.8 1.3 2.8E-05 39.7 6.6 38 205-243 2-40 (317)
314 PRK08263 short chain dehydroge 88.8 1.3 2.9E-05 38.5 6.5 41 203-244 3-44 (275)
315 COG2242 CobL Precorrin-6B meth 88.7 2.7 5.9E-05 35.1 7.8 61 195-256 27-93 (187)
316 PRK12936 3-ketoacyl-(acyl-carr 88.7 1.5 3.3E-05 37.0 6.7 41 202-243 5-46 (245)
317 KOG0725 Reductases with broad 88.6 1.4 3E-05 39.1 6.5 43 201-244 6-49 (270)
318 PF01210 NAD_Gly3P_dh_N: NAD-d 88.6 1.5 3.2E-05 35.3 6.2 41 205-246 1-41 (157)
319 PTZ00079 NADP-specific glutama 88.6 2.2 4.7E-05 40.6 8.0 36 200-236 234-270 (454)
320 PRK06484 short chain dehydroge 88.5 1.3 2.8E-05 42.5 6.8 47 201-248 267-315 (520)
321 PRK12814 putative NADPH-depend 88.5 1.4 2.9E-05 44.1 7.0 36 201-237 191-226 (652)
322 PRK07856 short chain dehydroge 88.5 1 2.2E-05 38.6 5.5 37 202-239 5-42 (252)
323 PRK13984 putative oxidoreducta 88.5 1.5 3.3E-05 43.2 7.3 36 200-236 280-315 (604)
324 PRK05884 short chain dehydroge 88.4 1.4 2.9E-05 37.4 6.1 38 205-243 2-40 (223)
325 PRK06940 short chain dehydroge 88.4 1.4 3E-05 38.6 6.4 39 203-243 2-40 (275)
326 PRK07417 arogenate dehydrogena 88.2 1.4 3.1E-05 38.9 6.4 43 205-248 2-44 (279)
327 PF01494 FAD_binding_3: FAD bi 88.2 0.8 1.7E-05 40.8 4.8 33 205-238 3-35 (356)
328 PRK08293 3-hydroxybutyryl-CoA 88.2 1.5 3.2E-05 39.0 6.4 40 204-244 4-43 (287)
329 PRK05565 fabG 3-ketoacyl-(acyl 88.1 1.6 3.6E-05 36.8 6.5 40 203-243 5-46 (247)
330 COG0031 CysK Cysteine synthase 88.1 3.3 7.1E-05 37.3 8.4 61 195-256 54-117 (300)
331 PRK06079 enoyl-(acyl carrier p 88.1 1.5 3.2E-05 37.8 6.3 44 202-246 6-52 (252)
332 PF03807 F420_oxidored: NADP o 88.0 3.2 7E-05 29.9 7.2 44 205-249 1-49 (96)
333 PRK07806 short chain dehydroge 88.0 1.5 3.3E-05 37.3 6.3 35 202-237 5-40 (248)
334 PLN00141 Tic62-NAD(P)-related 87.9 1.4 3.1E-05 37.9 6.1 40 202-242 16-56 (251)
335 PRK07775 short chain dehydroge 87.9 1.7 3.8E-05 37.9 6.7 40 202-242 9-49 (274)
336 PRK06523 short chain dehydroge 87.9 1.1 2.3E-05 38.6 5.3 35 202-237 8-43 (260)
337 PRK06720 hypothetical protein; 87.8 2.1 4.5E-05 35.0 6.6 39 202-241 15-54 (169)
338 PLN02896 cinnamyl-alcohol dehy 87.8 1.6 3.6E-05 39.6 6.7 41 200-241 7-48 (353)
339 TIGR02964 xanthine_xdhC xanthi 87.7 1.2 2.6E-05 38.9 5.4 39 199-238 96-134 (246)
340 PF13241 NAD_binding_7: Putati 87.6 0.69 1.5E-05 34.6 3.4 35 202-237 6-40 (103)
341 PRK08303 short chain dehydroge 87.6 1.5 3.3E-05 39.2 6.3 34 202-236 7-41 (305)
342 PRK08416 7-alpha-hydroxysteroi 87.6 1.9 4.1E-05 37.3 6.6 40 201-241 6-47 (260)
343 PF03486 HI0933_like: HI0933-l 87.6 0.87 1.9E-05 42.8 4.8 48 205-253 2-51 (409)
344 PRK12810 gltD glutamate syntha 87.5 2.2 4.7E-05 40.7 7.6 35 201-236 141-175 (471)
345 PRK06398 aldose dehydrogenase; 87.5 1.1 2.4E-05 38.7 5.2 35 202-237 5-40 (258)
346 PF03446 NAD_binding_2: NAD bi 87.4 2 4.4E-05 34.7 6.3 45 204-249 2-46 (163)
347 PRK07424 bifunctional sterol d 87.4 1.6 3.5E-05 41.0 6.4 39 202-241 177-216 (406)
348 PRK14192 bifunctional 5,10-met 87.3 4 8.7E-05 36.4 8.6 59 195-255 150-210 (283)
349 PRK12481 2-deoxy-D-gluconate 3 87.3 2.7 5.8E-05 36.2 7.4 35 202-237 7-42 (251)
350 PRK13403 ketol-acid reductoiso 87.3 1.7 3.7E-05 39.6 6.2 48 200-248 13-60 (335)
351 PRK06484 short chain dehydroge 87.3 1.6 3.4E-05 41.9 6.5 45 202-247 4-50 (520)
352 PRK06603 enoyl-(acyl carrier p 87.2 1.7 3.6E-05 37.7 6.1 36 201-237 6-44 (260)
353 PRK12367 short chain dehydroge 87.2 2 4.3E-05 37.2 6.5 35 202-237 13-48 (245)
354 cd05191 NAD_bind_amino_acid_DH 87.1 3.3 7.2E-05 29.6 6.7 35 201-235 21-55 (86)
355 COG2264 PrmA Ribosomal protein 87.1 5.3 0.00011 36.0 9.2 46 198-245 158-203 (300)
356 PRK07791 short chain dehydroge 87.1 2.1 4.5E-05 37.8 6.8 37 200-237 3-40 (286)
357 PRK07574 formate dehydrogenase 87.1 1.6 3.6E-05 40.7 6.3 45 202-247 191-235 (385)
358 PRK06179 short chain dehydroge 87.1 1.3 2.8E-05 38.4 5.3 38 202-240 3-41 (270)
359 PF13478 XdhC_C: XdhC Rossmann 87.1 0.63 1.4E-05 36.8 3.0 32 206-238 1-32 (136)
360 PRK08063 enoyl-(acyl carrier p 87.0 1.8 4E-05 36.8 6.2 39 202-241 3-43 (250)
361 PRK12921 2-dehydropantoate 2-r 87.0 1.6 3.5E-05 38.8 6.0 42 205-248 2-43 (305)
362 PRK06753 hypothetical protein; 87.0 0.98 2.1E-05 41.2 4.7 32 205-237 2-33 (373)
363 PRK00421 murC UDP-N-acetylmura 87.0 1.7 3.7E-05 41.3 6.5 50 199-249 3-54 (461)
364 TIGR01317 GOGAT_sm_gam glutama 86.9 2.1 4.5E-05 41.1 7.1 35 201-236 141-175 (485)
365 PLN02686 cinnamoyl-CoA reducta 86.9 1.8 4E-05 39.8 6.5 45 200-245 50-95 (367)
366 PLN03139 formate dehydrogenase 86.8 1.6 3.4E-05 40.8 6.0 46 202-248 198-243 (386)
367 PLN02986 cinnamyl-alcohol dehy 86.8 1.6 3.5E-05 39.0 5.9 37 202-239 4-41 (322)
368 PRK05650 short chain dehydroge 86.7 1.9 4.2E-05 37.3 6.3 37 205-242 2-39 (270)
369 PRK06114 short chain dehydroge 86.7 2.9 6.3E-05 35.9 7.3 35 202-237 7-42 (254)
370 PRK09135 pteridine reductase; 86.6 2.4 5.1E-05 35.9 6.7 34 202-236 5-39 (249)
371 PRK05714 2-octaprenyl-3-methyl 86.6 1.4 3.1E-05 40.7 5.7 32 205-237 4-35 (405)
372 KOG2304 3-hydroxyacyl-CoA dehy 86.6 1.4 3E-05 38.1 5.0 44 200-244 8-51 (298)
373 PRK09310 aroDE bifunctional 3- 86.6 3.5 7.6E-05 39.6 8.4 42 202-244 331-372 (477)
374 PLN02928 oxidoreductase family 86.5 1.4 3.1E-05 40.4 5.5 36 201-237 157-192 (347)
375 PRK07066 3-hydroxybutyryl-CoA 86.5 2.1 4.5E-05 39.0 6.4 38 204-242 8-45 (321)
376 PRK09496 trkA potassium transp 86.4 2 4.4E-05 40.4 6.7 44 205-249 2-46 (453)
377 TIGR01470 cysG_Nterm siroheme 86.4 3.6 7.8E-05 34.8 7.5 35 202-237 8-42 (205)
378 PRK06719 precorrin-2 dehydroge 86.3 1.9 4.1E-05 34.9 5.5 44 201-247 11-54 (157)
379 PRK06847 hypothetical protein; 86.3 1.2 2.5E-05 40.7 4.9 34 203-237 4-37 (375)
380 TIGR01289 LPOR light-dependent 86.3 2.2 4.7E-05 38.3 6.5 40 203-243 3-44 (314)
381 PRK01710 murD UDP-N-acetylmura 86.3 2.5 5.4E-05 40.2 7.2 48 201-249 12-64 (458)
382 PRK07530 3-hydroxybutyryl-CoA 86.3 2.2 4.7E-05 37.9 6.4 39 204-243 5-43 (292)
383 PRK14967 putative methyltransf 86.3 2.9 6.3E-05 35.6 7.0 48 196-245 30-77 (223)
384 PF06325 PrmA: Ribosomal prote 86.2 2.6 5.5E-05 37.9 6.8 44 200-245 159-202 (295)
385 PRK06130 3-hydroxybutyryl-CoA 86.2 2.1 4.6E-05 38.3 6.4 41 204-245 5-45 (311)
386 PRK05708 2-dehydropantoate 2-r 86.1 2.5 5.5E-05 37.9 6.8 41 204-245 3-43 (305)
387 TIGR02415 23BDH acetoin reduct 86.1 2.4 5.1E-05 36.2 6.4 38 204-242 1-39 (254)
388 PRK08159 enoyl-(acyl carrier p 86.0 2.2 4.8E-05 37.4 6.3 37 200-237 7-46 (272)
389 TIGR02622 CDP_4_6_dhtase CDP-g 86.0 1.7 3.7E-05 39.4 5.7 37 202-239 3-40 (349)
390 PF13450 NAD_binding_8: NAD(P) 85.8 1.5 3.3E-05 30.1 4.1 29 208-237 1-29 (68)
391 PLN02583 cinnamoyl-CoA reducta 85.8 2.1 4.6E-05 37.9 6.1 34 202-236 5-39 (297)
392 PRK08936 glucose-1-dehydrogena 85.8 2.7 5.9E-05 36.2 6.7 35 201-236 5-40 (261)
393 PRK07577 short chain dehydroge 85.7 1.6 3.4E-05 36.8 5.1 35 202-237 2-37 (234)
394 PRK06483 dihydromonapterin red 85.7 2.4 5.2E-05 35.8 6.2 36 203-239 2-38 (236)
395 PRK08415 enoyl-(acyl carrier p 85.7 2.2 4.8E-05 37.5 6.1 35 202-237 4-41 (274)
396 PRK06129 3-hydroxyacyl-CoA deh 85.7 2.2 4.8E-05 38.3 6.2 39 204-243 3-41 (308)
397 PRK08163 salicylate hydroxylas 85.6 1.3 2.9E-05 40.7 4.9 34 203-237 4-37 (396)
398 KOG1014 17 beta-hydroxysteroid 85.6 2.2 4.8E-05 38.3 6.0 54 201-256 47-110 (312)
399 PRK14982 acyl-ACP reductase; P 85.5 2.5 5.4E-05 38.8 6.4 45 200-244 152-198 (340)
400 PRK07045 putative monooxygenas 85.5 1.3 2.8E-05 40.8 4.7 33 204-237 6-38 (388)
401 KOG1208 Dehydrogenases with di 85.5 2.4 5.3E-05 38.4 6.3 44 200-244 32-76 (314)
402 PF13738 Pyr_redox_3: Pyridine 85.4 1.1 2.5E-05 36.8 4.0 32 207-238 1-32 (203)
403 PLN02778 3,5-epimerase/4-reduc 85.3 3.2 6.9E-05 37.0 7.0 54 202-256 8-66 (298)
404 TIGR01505 tartro_sem_red 2-hyd 85.3 2.1 4.6E-05 38.0 5.8 44 205-249 1-44 (291)
405 COG2230 Cfa Cyclopropane fatty 85.2 5.4 0.00012 35.6 8.3 54 190-245 60-113 (283)
406 PRK13243 glyoxylate reductase; 85.2 2.5 5.3E-05 38.6 6.3 37 202-239 149-185 (333)
407 PLN02545 3-hydroxybutyryl-CoA 85.0 2.7 5.9E-05 37.4 6.5 38 204-242 5-42 (295)
408 PRK07236 hypothetical protein; 85.0 1.5 3.3E-05 40.4 5.0 34 203-237 6-39 (386)
409 PRK07190 hypothetical protein; 85.0 1.3 2.9E-05 42.5 4.7 33 204-237 6-38 (487)
410 PRK14175 bifunctional 5,10-met 85.0 6 0.00013 35.4 8.5 55 182-238 137-193 (286)
411 PRK07819 3-hydroxybutyryl-CoA 85.0 2.7 5.8E-05 37.4 6.3 38 204-242 6-43 (286)
412 TIGR02356 adenyl_thiF thiazole 85.0 1.9 4.1E-05 36.3 5.1 35 202-236 20-54 (202)
413 PLN02650 dihydroflavonol-4-red 84.9 2.1 4.5E-05 38.9 5.7 39 202-241 4-43 (351)
414 PLN02172 flavin-containing mon 84.9 1.4 3.1E-05 42.0 4.8 34 203-237 10-43 (461)
415 TIGR02355 moeB molybdopterin s 84.9 1.9 4.1E-05 37.5 5.2 35 203-237 24-58 (240)
416 PLN02989 cinnamyl-alcohol dehy 84.9 2 4.4E-05 38.3 5.6 38 202-240 4-42 (325)
417 PRK06475 salicylate hydroxylas 84.8 1.3 2.8E-05 41.1 4.4 33 204-237 3-35 (400)
418 TIGR02632 RhaD_aldol-ADH rhamn 84.8 2.5 5.4E-05 42.4 6.7 41 202-243 413-454 (676)
419 KOG1252 Cystathionine beta-syn 84.8 4.4 9.4E-05 37.0 7.5 61 195-256 95-159 (362)
420 KOG1209 1-Acyl dihydroxyaceton 84.7 2.4 5.1E-05 36.5 5.4 46 202-248 6-54 (289)
421 PRK06924 short chain dehydroge 84.7 2.6 5.6E-05 35.9 6.0 38 204-242 2-41 (251)
422 TIGR02032 GG-red-SF geranylger 84.6 1.5 3.3E-05 38.1 4.6 33 205-238 2-34 (295)
423 PRK07340 ornithine cyclodeamin 84.6 6 0.00013 35.6 8.5 45 200-244 122-167 (304)
424 PRK06184 hypothetical protein; 84.5 1.4 2.9E-05 42.4 4.5 33 204-237 4-36 (502)
425 PRK06171 sorbitol-6-phosphate 84.5 1.9 4.1E-05 37.2 5.1 36 202-238 8-44 (266)
426 PRK08328 hypothetical protein; 84.5 2 4.3E-05 37.1 5.1 36 202-237 26-61 (231)
427 PRK08850 2-octaprenyl-6-methox 84.4 2.5 5.4E-05 39.2 6.2 32 204-236 5-36 (405)
428 PF00899 ThiF: ThiF family; I 84.4 2.3 5E-05 33.1 5.1 34 203-236 2-35 (135)
429 PRK13943 protein-L-isoaspartat 84.4 3.5 7.7E-05 37.5 6.9 55 195-250 73-132 (322)
430 PRK12747 short chain dehydroge 84.2 3.4 7.4E-05 35.3 6.6 38 202-240 3-42 (252)
431 PRK12831 putative oxidoreducta 84.2 1.9 4.2E-05 41.1 5.4 35 200-235 137-171 (464)
432 PRK14106 murD UDP-N-acetylmura 84.2 3.9 8.4E-05 38.6 7.4 35 202-237 4-38 (450)
433 PRK12480 D-lactate dehydrogena 84.2 2.5 5.5E-05 38.5 5.9 37 202-239 145-181 (330)
434 PLN02662 cinnamyl-alcohol dehy 84.1 2.2 4.7E-05 38.0 5.4 37 202-239 3-40 (322)
435 TIGR01989 COQ6 Ubiquinone bios 84.1 2.3 5.1E-05 40.0 5.9 30 205-235 2-35 (437)
436 PRK12746 short chain dehydroge 84.1 3 6.5E-05 35.6 6.1 39 202-241 5-45 (254)
437 PF05368 NmrA: NmrA-like famil 84.1 3.3 7.2E-05 35.1 6.3 45 206-251 1-48 (233)
438 COG0686 Ald Alanine dehydrogen 84.0 1.5 3.3E-05 39.6 4.2 46 203-249 168-214 (371)
439 PRK12743 oxidoreductase; Provi 84.0 3.2 6.9E-05 35.6 6.3 37 203-240 2-40 (256)
440 COG1052 LdhA Lactate dehydroge 84.0 2.7 5.9E-05 38.2 6.0 37 201-238 144-180 (324)
441 PRK06463 fabG 3-ketoacyl-(acyl 84.0 4.1 8.9E-05 34.9 6.9 42 202-244 6-49 (255)
442 PRK08278 short chain dehydroge 84.0 2.1 4.6E-05 37.3 5.2 36 202-238 5-41 (273)
443 PRK08594 enoyl-(acyl carrier p 83.9 2.5 5.3E-05 36.6 5.6 34 202-236 6-42 (257)
444 PRK06141 ornithine cyclodeamin 83.9 4.9 0.00011 36.3 7.6 45 200-244 122-167 (314)
445 KOG1205 Predicted dehydrogenas 83.9 2.6 5.6E-05 37.6 5.6 41 202-243 11-52 (282)
446 PF00743 FMO-like: Flavin-bind 83.8 1.6 3.4E-05 42.5 4.7 33 204-237 2-34 (531)
447 PRK06718 precorrin-2 dehydroge 83.8 2.7 5.8E-05 35.5 5.5 34 202-236 9-42 (202)
448 PRK08244 hypothetical protein; 83.8 1.5 3.3E-05 41.9 4.5 32 205-237 4-35 (493)
449 PRK07201 short chain dehydroge 83.7 3 6.4E-05 41.2 6.7 40 203-243 371-411 (657)
450 PRK05855 short chain dehydroge 83.7 3.1 6.8E-05 40.0 6.7 41 202-243 314-355 (582)
451 TIGR01829 AcAcCoA_reduct aceto 83.7 3.6 7.7E-05 34.7 6.4 35 204-239 1-37 (242)
452 TIGR00465 ilvC ketol-acid redu 83.7 3.2 6.9E-05 37.6 6.3 47 202-249 2-49 (314)
453 PRK09496 trkA potassium transp 83.7 4 8.7E-05 38.4 7.3 45 201-246 229-273 (453)
454 PRK05599 hypothetical protein; 83.6 3.2 7E-05 35.6 6.2 37 205-243 2-39 (246)
455 PRK01368 murD UDP-N-acetylmura 83.6 2.5 5.5E-05 40.2 5.9 37 201-239 4-40 (454)
456 PRK15181 Vi polysaccharide bio 83.6 2.4 5.3E-05 38.5 5.6 37 200-237 12-49 (348)
457 PRK07364 2-octaprenyl-6-methox 83.5 1.5 3.3E-05 40.6 4.3 33 204-237 19-51 (415)
458 TIGR01988 Ubi-OHases Ubiquinon 83.4 1.7 3.6E-05 39.7 4.5 31 206-237 2-32 (385)
459 PRK07984 enoyl-(acyl carrier p 83.4 3.2 7E-05 36.1 6.1 35 202-237 5-42 (262)
460 PRK08642 fabG 3-ketoacyl-(acyl 83.4 3.5 7.6E-05 35.0 6.2 39 202-241 4-44 (253)
461 PRK08013 oxidoreductase; Provi 83.3 1.7 3.6E-05 40.4 4.5 33 205-238 5-37 (400)
462 PRK08219 short chain dehydroge 83.2 3.3 7E-05 34.5 5.9 39 204-244 4-43 (227)
463 PRK08690 enoyl-(acyl carrier p 83.1 3.7 8.1E-05 35.5 6.4 36 201-237 4-42 (261)
464 PRK05808 3-hydroxybutyryl-CoA 83.1 3.4 7.4E-05 36.5 6.2 37 204-241 4-40 (282)
465 PRK12825 fabG 3-ketoacyl-(acyl 83.1 4.3 9.3E-05 34.1 6.6 33 202-235 5-38 (249)
466 PRK07069 short chain dehydroge 83.1 2.9 6.3E-05 35.5 5.6 37 206-243 2-40 (251)
467 PRK07538 hypothetical protein; 83.0 1.8 3.9E-05 40.4 4.6 32 205-237 2-33 (413)
468 PRK07985 oxidoreductase; Provi 83.0 3.3 7.2E-05 36.7 6.1 35 201-236 47-82 (294)
469 PRK14618 NAD(P)H-dependent gly 83.0 3.5 7.7E-05 37.2 6.4 42 204-246 5-46 (328)
470 PRK08618 ornithine cyclodeamin 83.0 7.1 0.00015 35.4 8.3 45 200-244 124-169 (325)
471 PRK08410 2-hydroxyacid dehydro 83.0 2.5 5.5E-05 38.1 5.4 35 202-237 144-178 (311)
472 PRK08020 ubiF 2-octaprenyl-3-m 82.9 3 6.4E-05 38.4 5.9 33 204-237 6-38 (391)
473 PRK12937 short chain dehydroge 82.8 3.7 8.1E-05 34.7 6.2 34 202-236 4-38 (245)
474 PF07992 Pyr_redox_2: Pyridine 82.8 2.8 6.1E-05 34.3 5.3 32 205-237 1-32 (201)
475 PLN02730 enoyl-[acyl-carrier-p 82.8 2.8 6.1E-05 37.7 5.6 41 201-243 7-50 (303)
476 COG0702 Predicted nucleoside-d 82.5 3.2 7E-05 35.6 5.7 46 204-251 1-47 (275)
477 PLN02256 arogenate dehydrogena 82.5 5.4 0.00012 35.9 7.3 54 194-249 27-80 (304)
478 PRK05868 hypothetical protein; 82.4 2.1 4.6E-05 39.4 4.8 33 204-237 2-34 (372)
479 TIGR02028 ChlP geranylgeranyl 82.4 2 4.3E-05 40.1 4.6 33 205-238 2-34 (398)
480 PRK00094 gpsA NAD(P)H-dependen 82.3 4.1 8.8E-05 36.5 6.5 42 205-247 3-44 (325)
481 PRK09126 hypothetical protein; 82.3 1.9 4.1E-05 39.7 4.4 33 204-237 4-36 (392)
482 PRK05690 molybdopterin biosynt 82.3 3.1 6.6E-05 36.3 5.5 35 202-236 31-65 (245)
483 PRK08507 prephenate dehydrogen 82.2 4.7 0.0001 35.5 6.7 45 205-249 2-47 (275)
484 TIGR02360 pbenz_hydroxyl 4-hyd 82.2 2.1 4.5E-05 39.7 4.6 33 204-237 3-35 (390)
485 PRK11559 garR tartronate semia 82.1 4.3 9.2E-05 36.0 6.5 43 205-248 4-46 (296)
486 cd05313 NAD_bind_2_Glu_DH NAD( 82.0 5.1 0.00011 35.2 6.7 34 200-234 35-68 (254)
487 TIGR01214 rmlD dTDP-4-dehydror 82.0 4.5 9.9E-05 35.2 6.6 50 205-255 1-58 (287)
488 PRK08762 molybdopterin biosynt 82.0 3.4 7.3E-05 38.3 5.9 35 202-236 134-168 (376)
489 COG0111 SerA Phosphoglycerate 81.9 2.8 6.2E-05 38.1 5.3 32 203-235 142-173 (324)
490 COG0026 PurK Phosphoribosylami 81.9 2.7 5.8E-05 38.8 5.0 34 204-238 2-35 (375)
491 PF02254 TrkA_N: TrkA-N domain 81.9 6.1 0.00013 29.5 6.4 61 194-254 54-116 (116)
492 PRK05557 fabG 3-ketoacyl-(acyl 81.8 4.6 0.0001 33.9 6.4 36 202-238 4-40 (248)
493 PF02719 Polysacc_synt_2: Poly 81.8 3.2 6.9E-05 37.2 5.4 39 206-244 1-40 (293)
494 TIGR02354 thiF_fam2 thiamine b 81.8 3.2 6.9E-05 35.0 5.2 35 202-236 20-54 (200)
495 PRK08993 2-deoxy-D-gluconate 3 81.8 4.5 9.8E-05 34.7 6.4 35 202-237 9-44 (253)
496 PRK06128 oxidoreductase; Provi 81.7 3.4 7.3E-05 36.6 5.7 35 201-236 53-88 (300)
497 PRK04176 ribulose-1,5-biphosph 81.7 2.4 5.1E-05 37.2 4.6 37 200-237 22-58 (257)
498 PRK02705 murD UDP-N-acetylmura 81.7 5.1 0.00011 37.9 7.2 45 205-250 2-51 (459)
499 PRK12779 putative bifunctional 81.7 2.3 5E-05 44.4 5.1 35 201-236 304-338 (944)
500 PRK08261 fabG 3-ketoacyl-(acyl 81.6 3.7 8.1E-05 38.7 6.2 34 202-236 209-243 (450)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=1.6e-53 Score=380.90 Aligned_cols=225 Identities=36% Similarity=0.521 Sum_probs=211.8
Q ss_pred cccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496 13 VIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE 92 (267)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 92 (267)
|++|||+++.++++|+++++++.|.|+++||||+|+++|||++|+|.++|.++.. .+|++||||.+|+|+++|++|++
T Consensus 1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~--~~P~ipGHEivG~V~~vG~~V~~ 78 (339)
T COG1064 1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVP--KLPLIPGHEIVGTVVEVGEGVTG 78 (339)
T ss_pred CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCC--CCCccCCcceEEEEEEecCCCcc
Confidence 5789999999999999999999999999999999999999999999999999987 79999999999999999999999
Q ss_pred cCCCCEEEe-eccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496 93 VKERDLVLP-IFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI 171 (267)
Q Consensus 93 ~~~Gd~V~~-~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i 171 (267)
||+||||.+ ....+|++|+||++|++|+|++... .|+..+| +|+||+++|+++++++
T Consensus 79 ~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~~~G-------------------Gyaeyv~v~~~~~~~i 136 (339)
T COG1064 79 LKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYTTDG-------------------GYAEYVVVPARYVVKI 136 (339)
T ss_pred CCCCCEEEecCccCCCCCCccccCcccccCCCccc---cceeecC-------------------cceeEEEEchHHeEEC
Confidence 999999988 7789999999999999999998665 6666776 9999999999999999
Q ss_pred CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
|+++++++||.+.|+.+|.|+++ +.+++++|++|+|.|+|++|++++|+|+++|+ +|++++++++|++.+++||++++
T Consensus 137 P~~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~ 214 (339)
T COG1064 137 PEGLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHV 214 (339)
T ss_pred CCCCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEE
Confidence 99999999999999999999975 56999999999999999999999999999997 99999999999999999999999
Q ss_pred ECCCCCCccccccc
Q 024496 252 INPATCGDKTVSQV 265 (267)
Q Consensus 252 i~~~~~~~~~~~~v 265 (267)
+|.++ +++.+++
T Consensus 215 i~~~~--~~~~~~~ 226 (339)
T COG1064 215 INSSD--SDALEAV 226 (339)
T ss_pred EEcCC--chhhHHh
Confidence 99886 6665554
No 2
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=100.00 E-value=2.6e-49 Score=348.29 Aligned_cols=239 Identities=46% Similarity=0.802 Sum_probs=232.6
Q ss_pred ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
|++||.+++++++||++++++.+.|+++|||||+.++|+||+|.+.+.|..+. .+|.++|||++|+|++||+.|+++
T Consensus 1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~---~~P~vLGHEgAGiVe~VG~gVt~v 77 (366)
T COG1062 1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPE---GFPAVLGHEGAGIVEAVGEGVTSV 77 (366)
T ss_pred CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCC---CCceecccccccEEEEecCCcccc
Confidence 57899999999999999999999999999999999999999999999999887 499999999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
+|||.|+..+...||+|.+|.+|.+|+|.....+.+.|...||+.|+. .++....||.+.++|+||.+++...++++++
T Consensus 78 kpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls-~~~~~~~h~lG~stFa~y~vv~~~s~vki~~ 156 (366)
T COG1062 78 KPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLS-GNGVPVYHYLGCSTFAEYTVVHEISLVKIDP 156 (366)
T ss_pred CCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeee-cCCcceeeeeccccchhheeecccceEECCC
Confidence 999999999999999999999999999999999999999999999997 7888899999999999999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~ 253 (267)
+.+++.++++.|.+.|.+.++.+.+++++|++|.|+|.|++|++++|-|+..|+.+||++|.+++|++++++||+++++|
T Consensus 157 ~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn 236 (366)
T COG1062 157 DAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVN 236 (366)
T ss_pred CCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 024496 254 PAT 256 (267)
Q Consensus 254 ~~~ 256 (267)
+++
T Consensus 237 ~~~ 239 (366)
T COG1062 237 PKE 239 (366)
T ss_pred chh
Confidence 988
No 3
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-48 Score=337.79 Aligned_cols=245 Identities=60% Similarity=0.962 Sum_probs=234.8
Q ss_pred CcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496 9 KAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE 88 (267)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~ 88 (267)
+..++.+|||.+.+++++||.++++..++|+..||+||+.++++||+|.+.++|..+.. .+|.++|||++|+|+.+|.
T Consensus 1 t~gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~--~fP~IlGHEaaGIVESvGe 78 (375)
T KOG0022|consen 1 TAGKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEG--LFPVILGHEAAGIVESVGE 78 (375)
T ss_pred CCCCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccc--cCceEecccceeEEEEecC
Confidence 35688999999999999999999999999999999999999999999999999987655 7999999999999999999
Q ss_pred CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCC-CCCccccccCCceecccccccceeeeEEeeccc
Q 024496 89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPR-DGTSRFRELKGDVIHHFLNISSFTEYSVVDITH 167 (267)
Q Consensus 89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~-~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~ 167 (267)
.|+++++||+|+......|++|.+|+++..|+|.+...+.+.+... ||+.|+- -+|+.++||.+..+|+||.+++...
T Consensus 79 gV~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~-~~gk~iyHfmg~StFsEYTVv~~~~ 157 (375)
T KOG0022|consen 79 GVTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFT-CKGKPIYHFMGTSTFSEYTVVDDIS 157 (375)
T ss_pred CccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeee-eCCCceEEecccccceeEEEeecce
Confidence 9999999999999999999999999999999999998887666664 9999997 8899999999999999999999999
Q ss_pred eEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496 168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247 (267)
Q Consensus 168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G 247 (267)
+++|+++.+++.++++.|.++|+|.|++..+++++|+++.|+|.|.+|+++++-||+.|+.+||++|.|++|.+++++||
T Consensus 158 v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fG 237 (375)
T KOG0022|consen 158 VAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFG 237 (375)
T ss_pred eEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEECCCC
Q 024496 248 ITDFINPAT 256 (267)
Q Consensus 248 ~~~vi~~~~ 256 (267)
+++++|+++
T Consensus 238 aTe~iNp~d 246 (375)
T KOG0022|consen 238 ATEFINPKD 246 (375)
T ss_pred cceecChhh
Confidence 999999986
No 4
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.9e-48 Score=337.65 Aligned_cols=239 Identities=28% Similarity=0.418 Sum_probs=214.9
Q ss_pred CCCcCccccceeEEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEE
Q 024496 7 SPKAGKVIRCKAAICRIPGK--PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVE 84 (267)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~ 84 (267)
|++...|.+++++.+..+++ ++++.+++.|+|+++||+|+|+++|||++|+|.++|+++.. ++|.++|||.+|+|+
T Consensus 1 ~~~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s--~~PlV~GHEiaG~Vv 78 (360)
T KOG0023|consen 1 MSSMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLS--KYPLVPGHEIAGVVV 78 (360)
T ss_pred CCcccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcc--cCCccCCceeeEEEE
Confidence 45567789999999999998 46779999999999999999999999999999999999985 899999999999999
Q ss_pred EecCCCcccCCCCEE-EeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEe
Q 024496 85 SVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVV 163 (267)
Q Consensus 85 ~vG~~v~~~~~Gd~V-~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v 163 (267)
++|++|++|++|||| +....-+|..|++|+++.+++|++....+ .|...||+..+ |+|++|+++
T Consensus 79 kvGs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~-~g~~~DGt~~~--------------ggf~~~~~v 143 (360)
T KOG0023|consen 79 KVGSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTY-NGVYHDGTITQ--------------GGFQEYAVV 143 (360)
T ss_pred EECCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEec-cccccCCCCcc--------------CccceeEEE
Confidence 999999999999999 55667889999999999999999766554 88888886555 789999999
Q ss_pred eccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh-hhHHH
Q 024496 164 DITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP-EKFEI 242 (267)
Q Consensus 164 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~-~~~~~ 242 (267)
++.++++||++++.+.||.+.|+..|.|.+ ....++.+|++|.|.|+|++|.+++|+|++||. +|++++++. .|.+.
T Consensus 144 ~~~~a~kIP~~~pl~~aAPlLCaGITvYsp-Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea 221 (360)
T KOG0023|consen 144 DEVFAIKIPENLPLASAAPLLCAGITVYSP-LKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEA 221 (360)
T ss_pred eeeeEEECCCCCChhhccchhhcceEEeeh-hHHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHH
Confidence 999999999999999999999999999996 567889999999999997799999999999999 999998887 66666
Q ss_pred HHHcCCCEEECCCCCCccccccc
Q 024496 243 GKKFGITDFINPATCGDKTVSQV 265 (267)
Q Consensus 243 ~~~~G~~~vi~~~~~~~~~~~~v 265 (267)
++.||++.+++..+ .+|+++++
T Consensus 222 ~~~LGAd~fv~~~~-d~d~~~~~ 243 (360)
T KOG0023|consen 222 IKSLGADVFVDSTE-DPDIMKAI 243 (360)
T ss_pred HHhcCcceeEEecC-CHHHHHHH
Confidence 77899999999984 16776654
No 5
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.7e-45 Score=319.60 Aligned_cols=218 Identities=28% Similarity=0.417 Sum_probs=200.1
Q ss_pred ccceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCC-CCCCCCCcccceeeEEEEEEecCCCc
Q 024496 14 IRCKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTD-LPKLPLPVIFGHEAVGVVESVGEYVE 91 (267)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~~~p~~~G~e~~G~V~~vG~~v~ 91 (267)
.+|+|++++++++ +++++.|.|++ .|+||+|++.++|||++|+|.+..... .+..+.|+++|||.+|+|+++|+.|+
T Consensus 3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk 81 (354)
T KOG0024|consen 3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK 81 (354)
T ss_pred cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence 4789999999999 99999999987 999999999999999999999975443 33346899999999999999999999
Q ss_pred ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496 92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK 170 (267)
Q Consensus 92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~ 170 (267)
++|+||||++.+..+|+.|++|++|++|.|+...+ .+.. .+ |++++|++++++++++
T Consensus 82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f---~atpp~~-------------------G~la~y~~~~~dfc~K 139 (354)
T KOG0024|consen 82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVF---CATPPVD-------------------GTLAEYYVHPADFCYK 139 (354)
T ss_pred ccccCCeEEecCCCccccchhhhCcccccCCcccc---ccCCCcC-------------------CceEEEEEechHheee
Confidence 99999999999999999999999999999999887 3333 33 4999999999999999
Q ss_pred cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496 171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD 250 (267)
Q Consensus 171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~ 250 (267)
+||+++++++|++. ++++++|| -+++++++|++|||+|+|++|+++...|+++|+.+|++++-.+.|++++++||++.
T Consensus 140 LPd~vs~eeGAl~e-PLsV~~HA-cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~ 217 (354)
T KOG0024|consen 140 LPDNVSFEEGALIE-PLSVGVHA-CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATV 217 (354)
T ss_pred CCCCCchhhccccc-chhhhhhh-hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeE
Confidence 99999999999988 89999996 57899999999999999999999999999999999999999999999999999998
Q ss_pred EECCCC
Q 024496 251 FINPAT 256 (267)
Q Consensus 251 vi~~~~ 256 (267)
+.+...
T Consensus 218 ~~~~~~ 223 (354)
T KOG0024|consen 218 TDPSSH 223 (354)
T ss_pred Eeeccc
Confidence 887766
No 6
>PLN02740 Alcohol dehydrogenase-like
Probab=100.00 E-value=2e-41 Score=312.87 Aligned_cols=246 Identities=60% Similarity=0.992 Sum_probs=206.0
Q ss_pred CcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496 9 KAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE 88 (267)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~ 88 (267)
+.++|++||++++..+++++.++++|.|.|+++||+|||++++||++|++.+.|..... ..+|.++|||++|+|+++|+
T Consensus 4 ~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~-~~~p~i~GhE~~G~V~~vG~ 82 (381)
T PLN02740 4 TQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQ-RAYPRILGHEAAGIVESVGE 82 (381)
T ss_pred ccccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCccc-CCCCccccccceEEEEEeCC
Confidence 45689999999999998778999999999999999999999999999999998876432 15789999999999999999
Q ss_pred CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCC-CCCCCCCcccc--ccCCceecccccccceeeeEEeec
Q 024496 89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRP-NMPRDGTSRFR--ELKGDVIHHFLNISSFTEYSVVDI 165 (267)
Q Consensus 89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~-g~~~~g~~~~~--~~~~~~~~~~~~~g~~a~y~~v~~ 165 (267)
++++|++||||++.+..+|+.|.+|+.+.+++|++....... ....+|..++. .. +....+++..|+|+||+++|.
T Consensus 83 ~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~G~~aey~~v~~ 161 (381)
T PLN02740 83 GVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGD-GQPIYHFLNTSTFTEYTVLDS 161 (381)
T ss_pred CCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccC-CCcccccccCccceeEEEEeh
Confidence 999999999999999999999999999999999885431000 00000000000 00 000011223469999999999
Q ss_pred cceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 166 THVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 166 ~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
++++++|+++++++++.+.+.+.++|+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++.+++
T Consensus 162 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 162 ACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred HHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 99999999999999999999999999987788899999999999999999999999999999779999999999999999
Q ss_pred cCCCEEECCCC
Q 024496 246 FGITDFINPAT 256 (267)
Q Consensus 246 ~G~~~vi~~~~ 256 (267)
+|+++++|+++
T Consensus 242 ~Ga~~~i~~~~ 252 (381)
T PLN02740 242 MGITDFINPKD 252 (381)
T ss_pred cCCcEEEeccc
Confidence 99999999876
No 7
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=100.00 E-value=6.2e-41 Score=308.31 Aligned_cols=238 Identities=46% Similarity=0.819 Sum_probs=203.4
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
||++++..++++++++++|.|+|.++||+|||.+++||++|++.+.|.++.. .+|.++|||++|+|+++|+++++|++
T Consensus 2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~--~~p~i~GhE~~G~V~~vG~~v~~~~~ 79 (368)
T TIGR02818 2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEG--VFPVILGHEGAGIVEAVGEGVTSVKV 79 (368)
T ss_pred ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCC--CCCeeeccccEEEEEEECCCCccCCC
Confidence 8999999988889999999999999999999999999999999998876543 67999999999999999999999999
Q ss_pred CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496 96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI 175 (267)
Q Consensus 96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~ 175 (267)
||||++.+..+|++|.+|+.++.++|.+.....+.|...+|..++.. .|....++.+.|+|+||+++|.++++++|+++
T Consensus 80 GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l 158 (368)
T TIGR02818 80 GDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSK-DGQPIYHYMGCSTFSEYTVVPEISLAKINPAA 158 (368)
T ss_pred CCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCcccccc-CCCcccccccCccceeeEEechhheEECCCCC
Confidence 99999988899999999999999999875432222333232211100 01011122224699999999999999999999
Q ss_pred ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA 255 (267)
Q Consensus 176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~ 255 (267)
++++++++.+++.++|+++.+..++++|++|||+|+|++|++++|+|+++|+.+|+++++++++++.++++|+++++|++
T Consensus 159 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~ 238 (368)
T TIGR02818 159 PLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPN 238 (368)
T ss_pred CHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEccc
Confidence 99999999999999999887888999999999999999999999999999997899999999999999999999999976
Q ss_pred C
Q 024496 256 T 256 (267)
Q Consensus 256 ~ 256 (267)
+
T Consensus 239 ~ 239 (368)
T TIGR02818 239 D 239 (368)
T ss_pred c
Confidence 4
No 8
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=100.00 E-value=4.4e-40 Score=302.51 Aligned_cols=240 Identities=55% Similarity=0.896 Sum_probs=205.2
Q ss_pred ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
.+|||+++..++++++++++|.|.|+++||+||+++++||++|++.+.|.++.. .+|.++|||++|+|+++|+++++|
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~--~~p~v~G~E~~G~V~~vG~~v~~~ 78 (368)
T cd08300 1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEG--LFPVILGHEGAGIVESVGEGVTSV 78 (368)
T ss_pred CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccC--CCCceeccceeEEEEEeCCCCccC
Confidence 378999999888889999999999999999999999999999999998876544 679999999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|+..+..+|+.|.+|++++++.|.+.....+.|...+|..++.. .|....++.+.|+|+||+.++.+.++++|+
T Consensus 79 ~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~-~g~~~~~~~~~G~~aey~~v~~~~~~~iP~ 157 (368)
T cd08300 79 KPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSC-KGKPIYHFMGTSTFSEYTVVAEISVAKINP 157 (368)
T ss_pred CCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCcccccc-CCcccccccccccceeEEEEchhceEeCCC
Confidence 9999999988899999999999999999875432222333333222110 011111222346999999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~ 253 (267)
++++++++.+.+++.++|+++.+...+++|++|||+|+|++|++++|+|+.+|+.+|+++++++++++.++++|+++++|
T Consensus 158 ~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~ 237 (368)
T cd08300 158 EAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVN 237 (368)
T ss_pred CCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEc
Confidence 99999999999999999998777889999999999999999999999999999977999999999999999999999999
Q ss_pred CCC
Q 024496 254 PAT 256 (267)
Q Consensus 254 ~~~ 256 (267)
+++
T Consensus 238 ~~~ 240 (368)
T cd08300 238 PKD 240 (368)
T ss_pred ccc
Confidence 876
No 9
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=100.00 E-value=9.5e-40 Score=300.18 Aligned_cols=240 Identities=59% Similarity=1.000 Sum_probs=204.0
Q ss_pred ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
++|||+++.+++++++++++|.|.|+++||+||+.+++||++|++.+.|..+.. .+|.++|||++|+|+++|+++++|
T Consensus 1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~--~~p~i~G~e~~G~V~~vG~~v~~~ 78 (369)
T cd08301 1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTP--LFPRILGHEAAGIVESVGEGVTDL 78 (369)
T ss_pred CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCC--CCCcccccccceEEEEeCCCCCcc
Confidence 489999999988889999999999999999999999999999999998876543 678999999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCC-CccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDG-TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT 172 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g-~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP 172 (267)
++||||++.+..+|++|++|+.+.++.|.+.......|....+ ..++. -.|....++.+.|+|+||++++..+++++|
T Consensus 79 ~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP 157 (369)
T cd08301 79 KPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFS-INGKPIYHFVGTSTFSEYTVVHVGCVAKIN 157 (369)
T ss_pred ccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccc-cCCcceeeeeccccceeEEEEecccEEECC
Confidence 9999999999999999999999999999875432111221110 00000 001111223334699999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
+++++++++++.+.+.++|+++++..++++|++|||+|+|++|++++|+|+.+|+.+|+++++++++++.++++|++.++
T Consensus 158 ~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 158 PEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFV 237 (369)
T ss_pred CCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEE
Confidence 99999999999999999999888888999999999999999999999999999997899999999999999999999999
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
++++
T Consensus 238 ~~~~ 241 (369)
T cd08301 238 NPKD 241 (369)
T ss_pred cccc
Confidence 8865
No 10
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=100.00 E-value=4e-40 Score=303.11 Aligned_cols=243 Identities=40% Similarity=0.690 Sum_probs=202.8
Q ss_pred ceeEEeecCCC--------CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEec
Q 024496 16 CKAAICRIPGK--------PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG 87 (267)
Q Consensus 16 ~~a~~~~~~~~--------~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG 87 (267)
|||+++.+++. .++++++|.|.|+++||+|||.+++||++|++.+.|.++. .+|.++|||++|+|+++|
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~---~~p~i~GhE~~G~V~~vG 77 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR---PLPMALGHEAAGVVVEVG 77 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC---CCCccCCccceeEEEEeC
Confidence 79999998763 3889999999999999999999999999999999887542 578999999999999999
Q ss_pred CCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc
Q 024496 88 EYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH 167 (267)
Q Consensus 88 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~ 167 (267)
+++++|++||||++.+...|+.|.+|++|.+++|.+.......|...+|..++....+.. .+..+.|+|+||++++..+
T Consensus 78 ~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~-~~~~g~G~~aey~~v~~~~ 156 (371)
T cd08281 78 EGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEI-NHHLGVSAFAEYAVVSRRS 156 (371)
T ss_pred CCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCccc-ccccCcccceeeEEecccc
Confidence 999999999999988888999999999999999987643222232222211110000000 0111236999999999999
Q ss_pred eEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496 168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247 (267)
Q Consensus 168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G 247 (267)
++++|+++++++|+.+.+.+.+||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|
T Consensus 157 ~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~G 236 (371)
T cd08281 157 VVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELG 236 (371)
T ss_pred eEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcC
Confidence 99999999999999999899999998778889999999999999999999999999999977999999999999999999
Q ss_pred CCEEECCCCCCcccccc
Q 024496 248 ITDFINPATCGDKTVSQ 264 (267)
Q Consensus 248 ~~~vi~~~~~~~~~~~~ 264 (267)
+++++++++ +++.++
T Consensus 237 a~~~i~~~~--~~~~~~ 251 (371)
T cd08281 237 ATATVNAGD--PNAVEQ 251 (371)
T ss_pred CceEeCCCc--hhHHHH
Confidence 999999987 655443
No 11
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=100.00 E-value=9.1e-40 Score=299.26 Aligned_cols=234 Identities=36% Similarity=0.608 Sum_probs=200.9
Q ss_pred cceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 15 RCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
+|||+++.+++++++++++|.|.|+++||+|||.+++||++|++.+.|..+. .+|.++|||++|+|+++|+++++|+
T Consensus 1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~---~~p~i~G~e~~G~V~~vG~~v~~~~ 77 (358)
T TIGR03451 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND---EFPFLLGHEAAGVVEAVGEGVTDVA 77 (358)
T ss_pred CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc---cCCcccccceEEEEEEeCCCCcccC
Confidence 6999999999988999999999999999999999999999999999886542 5789999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCC-CCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGY-RPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
+||+|++.+...|+.|++|..+.+++|....... ..++ .+|. ..+...+.|+|+||+.++.++++++|+
T Consensus 78 ~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~-~~g~---------~~~~~~~~G~~aey~~v~~~~~~~ip~ 147 (358)
T TIGR03451 78 PGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTL-TDGT---------ELSPALGIGAFAEKTLVHAGQCTKVDP 147 (358)
T ss_pred CCCEEEEccCCCCCCChHHhCcCcccCcCcccccccccc-ccCc---------ccccccccccccceEEEehhheEECCC
Confidence 9999999999999999999999999997532110 0000 0010 000001236999999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~ 253 (267)
++++++++++.+.+.++|+++.+...+++|++|||+|+|++|++++|+|+++|+++|+++++++++++.++++|+++++|
T Consensus 148 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~ 227 (358)
T TIGR03451 148 AADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVN 227 (358)
T ss_pred CCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEc
Confidence 99999999999899999987777788999999999999999999999999999967999999999999999999999999
Q ss_pred CCCCCccccc
Q 024496 254 PATCGDKTVS 263 (267)
Q Consensus 254 ~~~~~~~~~~ 263 (267)
+++ +++.+
T Consensus 228 ~~~--~~~~~ 235 (358)
T TIGR03451 228 SSG--TDPVE 235 (358)
T ss_pred CCC--cCHHH
Confidence 877 55543
No 12
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=100.00 E-value=4.6e-39 Score=291.84 Aligned_cols=217 Identities=29% Similarity=0.478 Sum_probs=194.7
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
|||+++..++. ++++++|.|.|+++||+||+.+++||++|++.+.+.+.... ..|.++|||++|+|+++|+++++|++
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~ 78 (339)
T cd08239 1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPA-YQGVIPGHEPAGVVVAVGPGVTHFRV 78 (339)
T ss_pred CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccC-CCCceeccCceEEEEEECCCCccCCC
Confidence 79999998766 99999999999999999999999999999998877643221 45899999999999999999999999
Q ss_pred CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496 96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI 175 (267)
Q Consensus 96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~ 175 (267)
||+|+..+...|+.|++|+.|++++|.+... ..|...+| +|+||+++|.++++++|+++
T Consensus 79 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~~~G-------------------~~ae~~~v~~~~~~~~P~~~ 137 (339)
T cd08239 79 GDRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWNRDG-------------------GHAEYMLVPEKTLIPLPDDL 137 (339)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCcCccc--ccccCCCC-------------------cceeEEEechHHeEECCCCC
Confidence 9999999999999999999999999976543 23333344 99999999999999999999
Q ss_pred ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA 255 (267)
Q Consensus 176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~ 255 (267)
++++|+++.+++.+||+++ ...++++|++|||+|+|++|++++|+|+++|+++|++++++++++++++++|++++++++
T Consensus 138 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~ 216 (339)
T cd08239 138 SFADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSG 216 (339)
T ss_pred CHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCC
Confidence 9999999999999999975 567899999999999999999999999999995599999999999999999999999987
Q ss_pred C
Q 024496 256 T 256 (267)
Q Consensus 256 ~ 256 (267)
+
T Consensus 217 ~ 217 (339)
T cd08239 217 Q 217 (339)
T ss_pred c
Confidence 6
No 13
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=100.00 E-value=1.2e-38 Score=292.61 Aligned_cols=238 Identities=56% Similarity=0.943 Sum_probs=204.6
Q ss_pred ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
++|||+++.+.+++++++++|.|.++++||+|||+++++|++|++.+.|..+ . .+|.++|||++|+|+++|+++++|
T Consensus 1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~--~~p~i~G~e~~G~V~~vG~~v~~~ 77 (365)
T cd08277 1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-T--LFPVILGHEGAGIVESVGEGVTNL 77 (365)
T ss_pred CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-C--CCCeecccceeEEEEeeCCCCccC
Confidence 4789999998887799999999999999999999999999999999988765 2 578999999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|+..+..+|+.|.+|+.+.+++|++.... ..|...++..++.. .|....++.+.|+|+||++++.++++++|+
T Consensus 78 ~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~~~~~~~~-~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~ 155 (365)
T cd08277 78 KPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLMPDGTSRFTC-KGKKIYHFLGTSTFSQYTVVDENYVAKIDP 155 (365)
T ss_pred CCCCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccccCCcccccc-CCcccccccccccceeeEEEchhheEECCC
Confidence 9999999988899999999999999999875432 23433333211110 111111222346999999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~ 253 (267)
++++++++.+.+++.+||+++.+..++++|++|+|+|+|++|++++++|+.+|+.+|+++++++++++.++++|++++++
T Consensus 156 ~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~ 235 (365)
T cd08277 156 AAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFIN 235 (365)
T ss_pred CCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEec
Confidence 99999999999999999998777889999999999999999999999999999978999999999999999999999999
Q ss_pred CCC
Q 024496 254 PAT 256 (267)
Q Consensus 254 ~~~ 256 (267)
+++
T Consensus 236 ~~~ 238 (365)
T cd08277 236 PKD 238 (365)
T ss_pred ccc
Confidence 865
No 14
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=100.00 E-value=9.8e-39 Score=290.84 Aligned_cols=220 Identities=20% Similarity=0.368 Sum_probs=186.3
Q ss_pred ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHh-cCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496 14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK-SSTDLPKLPLPVIFGHEAVGVVESVGEYVEE 92 (267)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 92 (267)
.+++++++..+++ +++++++.| +.++||||||.+++||++|++.+. |..+.....+|.++|||++|+|+++ ++++
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~ 78 (343)
T PRK09880 3 VKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSG 78 (343)
T ss_pred ccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCcc
Confidence 4689999998888 999999987 589999999999999999999875 4332211257999999999999999 7889
Q ss_pred cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496 93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT 172 (267)
Q Consensus 93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP 172 (267)
|++||||++.+..+|++|++|+.+.+++|++... .|.... +....|+|+||++++.+.++++|
T Consensus 79 ~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~--------------~~~~~G~~aey~~v~~~~~~~~P 141 (343)
T PRK09880 79 LKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMY--------------FPHVDGGFTRYKVVDTAQCIPYP 141 (343)
T ss_pred CCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eecccc--------------cCCCCCceeeeEEechHHeEECC
Confidence 9999999999999999999999999999987543 221100 00012499999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++++++++. .+++++|+++ ......++++|+|+|+|++|++++|+|+++|+++|++++++++++++++++|+++++
T Consensus 142 ~~l~~~~aa~~-~~~~~a~~al-~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 142 EKADEKVMAFA-EPLAVAIHAA-HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLV 219 (343)
T ss_pred CCCCHHHHHhh-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEe
Confidence 99999876654 4788999975 455667899999999999999999999999997899999999999999999999999
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
|+++
T Consensus 220 ~~~~ 223 (343)
T PRK09880 220 NPQN 223 (343)
T ss_pred cCCc
Confidence 9877
No 15
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=100.00 E-value=1.6e-38 Score=291.62 Aligned_cols=228 Identities=23% Similarity=0.346 Sum_probs=195.1
Q ss_pred CCCcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEe
Q 024496 7 SPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESV 86 (267)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~v 86 (267)
.++++-|+++.++.+.+..+.+++.+++.|.|+++||+|||.+++||++|++.+.|.++.. .+|.++|||++|+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~--~~p~i~GhE~~G~V~~v 81 (360)
T PLN02586 4 SPEEEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFT--RYPIVPGHEIVGIVTKL 81 (360)
T ss_pred ChhhhchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCC--CCCccCCcceeEEEEEE
Confidence 4566789999999998887779999999999999999999999999999999998876533 57899999999999999
Q ss_pred cCCCcccCCCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCC----CCCCCCCCccccccCCceecccccccceeeeE
Q 024496 87 GEYVEEVKERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYR----PNMPRDGTSRFRELKGDVIHHFLNISSFTEYS 161 (267)
Q Consensus 87 G~~v~~~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~----~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~ 161 (267)
|+++++|++||+|++.+. .+|+.|.+|++|.+++|++..+... .|...+ |+|+||+
T Consensus 82 G~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~ 142 (360)
T PLN02586 82 GKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNY-------------------GGYSDMI 142 (360)
T ss_pred CCCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCC-------------------CccceEE
Confidence 999999999999986554 5799999999999999987543100 022223 4999999
Q ss_pred EeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh-H
Q 024496 162 VVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK-F 240 (267)
Q Consensus 162 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~-~ 240 (267)
++|.++++++|+++++++++++.+.+.|+|+++.+...+++|++|+|.|+|++|++++|+|+.+|+ +|++++.+.++ .
T Consensus 143 ~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~ 221 (360)
T PLN02586 143 VVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKED 221 (360)
T ss_pred EEchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhh
Confidence 999999999999999999999999999999977655667899999999999999999999999999 78877766655 4
Q ss_pred HHHHHcCCCEEECCCC
Q 024496 241 EIGKKFGITDFINPAT 256 (267)
Q Consensus 241 ~~~~~~G~~~vi~~~~ 256 (267)
+.++++|+++++++++
T Consensus 222 ~~~~~~Ga~~vi~~~~ 237 (360)
T PLN02586 222 EAINRLGADSFLVSTD 237 (360)
T ss_pred hHHHhCCCcEEEcCCC
Confidence 5567899999998765
No 16
>PLN02827 Alcohol dehydrogenase-like
Probab=100.00 E-value=6.6e-38 Score=289.35 Aligned_cols=238 Identities=54% Similarity=0.937 Sum_probs=196.6
Q ss_pred ccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496 12 KVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE 91 (267)
Q Consensus 12 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 91 (267)
.-..||++++.++++.++++++|.|.|+++||+|||.+++||++|++.+.+.. .+|.++|||++|+|+++|++++
T Consensus 9 ~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~-----~~p~i~GhE~~G~V~~vG~~v~ 83 (378)
T PLN02827 9 NVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA-----LFPRIFGHEASGIVESIGEGVT 83 (378)
T ss_pred ccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC-----CCCeeecccceEEEEEcCCCCc
Confidence 33579999999888779999999999999999999999999999999887642 4678999999999999999999
Q ss_pred ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCC-CCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496 92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPR-DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK 170 (267)
Q Consensus 92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~-~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~ 170 (267)
+|++||+|++.+..+|+.|.+|+++.+++|++..... .|... +...++. ..|....++...|+|+||+.+|...+++
T Consensus 84 ~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~G~~aeyv~v~~~~~~~ 161 (378)
T PLN02827 84 EFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLER-KGVMHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVK 161 (378)
T ss_pred ccCCCCEEEEecCCCCCCChhhhCcCcccccCccccc-cccccCCCccccc-ccCcccccccccccceeeEEechhheEE
Confidence 9999999999988999999999999999998743210 01000 0000000 0000000011236999999999999999
Q ss_pred cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496 171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD 250 (267)
Q Consensus 171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~ 250 (267)
+|+++++++++.+.+.+.++|+++++..++++|++|||+|+|++|++++|+|+++|+..|++++++++++++++++|+++
T Consensus 162 iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~ 241 (378)
T PLN02827 162 VDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTD 241 (378)
T ss_pred CCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcE
Confidence 99999999999998898999987777788999999999999999999999999999977889998999999999999999
Q ss_pred EECCCC
Q 024496 251 FINPAT 256 (267)
Q Consensus 251 vi~~~~ 256 (267)
++++++
T Consensus 242 ~i~~~~ 247 (378)
T PLN02827 242 FINPND 247 (378)
T ss_pred EEcccc
Confidence 999875
No 17
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=100.00 E-value=6.2e-38 Score=290.94 Aligned_cols=219 Identities=29% Similarity=0.436 Sum_probs=182.4
Q ss_pred cceeEEeecCCCCeEEEEeecCCCC-------CCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEec
Q 024496 15 RCKAAICRIPGKPLVIEEIEVEPPK-------AWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG 87 (267)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~p~~~-------~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG 87 (267)
-|||+++..+++ ++++++|.|.|+ ++||||||+++|||++|++.+.|..+. .+|.++|||++|+|+++|
T Consensus 2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~---~~p~i~GhE~~G~V~~vG 77 (393)
T TIGR02819 2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA---PTGLVLGHEITGEVIEKG 77 (393)
T ss_pred CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC---CCCccccceeEEEEEEEc
Confidence 489999998887 999999999874 689999999999999999999886532 578999999999999999
Q ss_pred CCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCC---CCCCCCCCCccccccCCceecccccccceeeeEEee
Q 024496 88 EYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGY---RPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVD 164 (267)
Q Consensus 88 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~---~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~ 164 (267)
++|++|++||||++.+...|+.|++|++|++++|.+..... .+|+...| .| .|+|+||+++|
T Consensus 78 ~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~-----~~----------~G~~aey~~v~ 142 (393)
T TIGR02819 78 RDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG-----GW----------VGGQSEYVMVP 142 (393)
T ss_pred CccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccC-----CC----------CCceEEEEEec
Confidence 99999999999999999999999999999999998643210 01111000 01 14999999999
Q ss_pred cc--ceEEcCCCCCh----hhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 165 IT--HVVKITPHIPL----GIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 165 ~~--~~~~iP~~~~~----~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
.. +++++|++++. .+++.+.+++.++|+++ +..++++|++|+|.|+|++|++++++|+.+|++.|++++++++
T Consensus 143 ~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~ 221 (393)
T TIGR02819 143 YADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPA 221 (393)
T ss_pred hhhCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 64 79999998653 34567777899999975 4578999999999989999999999999999966777788899
Q ss_pred hHHHHHHcCCCEEEC
Q 024496 239 KFEIGKKFGITDFIN 253 (267)
Q Consensus 239 ~~~~~~~~G~~~vi~ 253 (267)
|+++++++|++.+++
T Consensus 222 r~~~a~~~Ga~~v~~ 236 (393)
T TIGR02819 222 RLAQARSFGCETVDL 236 (393)
T ss_pred HHHHHHHcCCeEEec
Confidence 999999999985443
No 18
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=100.00 E-value=2.1e-37 Score=280.98 Aligned_cols=213 Identities=22% Similarity=0.296 Sum_probs=188.4
Q ss_pred eEEeecCCC----CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 18 AAICRIPGK----PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 18 a~~~~~~~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
|+++.+++. .++++++|.|.|+++||+|||.+++||++|++.+.|.++.. ..|.++|||++|+|+++|+++++|
T Consensus 1 ~~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~--~~p~i~G~e~~G~V~~vG~~v~~~ 78 (329)
T TIGR02822 1 AWEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVH--RPRVTPGHEVVGEVAGRGADAGGF 78 (329)
T ss_pred CeeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCC--CCCccCCcceEEEEEEECCCCccc
Confidence 355666653 38899999999999999999999999999999998876543 457899999999999999999999
Q ss_pred CCCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496 94 KERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT 172 (267)
Q Consensus 94 ~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP 172 (267)
++||+|++.+. ..|+.|++|+++.+++|+.... .|...+| +|+||+.+|..+++++|
T Consensus 79 ~~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP 136 (329)
T TIGR02822 79 AVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWDTDG-------------------GYAEYTTVPAAFAYRLP 136 (329)
T ss_pred CCCCEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcccCC-------------------cceeEEEeccccEEECC
Confidence 99999987654 5799999999999999987653 3433344 99999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
+++++++++.+.+.+.+||+++ ...++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++
T Consensus 137 ~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 137 TGYDDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAG 214 (329)
T ss_pred CCCCHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceec
Confidence 9999999999999999999976 46889999999999999999999999999999 799999999999999999999999
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
|+.+
T Consensus 215 ~~~~ 218 (329)
T TIGR02822 215 GAYD 218 (329)
T ss_pred cccc
Confidence 8654
No 19
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=1e-37 Score=285.36 Aligned_cols=220 Identities=30% Similarity=0.415 Sum_probs=178.9
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCc-ccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPV-IFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~-~~G~e~~G~V~~vG~~v~~~~ 94 (267)
|+++++..++...++++.+.|.++++||+|||.++|||++|++.+.+..+.. ..|. ++|||++|+|+++| .++.|+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~--~~~~~i~GHE~~G~V~evG-~~~~~~ 77 (350)
T COG1063 1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFV--PPGDIILGHEFVGEVVEVG-VVRGFK 77 (350)
T ss_pred CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCC--CCCCcccCccceEEEEEec-cccCCC
Confidence 6778888777645577777777899999999999999999999999987655 4555 99999999999999 778899
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE-cCC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK-ITP 173 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~-iP~ 173 (267)
+||||++.+..+|+.|.+|++|.+++|++..+ .|....+ .+ ..|+|+||+.+|.++.+. +|+
T Consensus 78 ~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~---~g~~~~~------------~~--~~G~~aEyv~vp~~~~~~~~pd 140 (350)
T COG1063 78 VGDRVVVEPNIPCGHCRYCRAGEYNLCENPGF---YGYAGLG------------GG--IDGGFAEYVRVPADFNLAKLPD 140 (350)
T ss_pred CCCEEEECCCcCCCCChhHhCcCcccCCCccc---ccccccc------------CC--CCCceEEEEEeccccCeecCCC
Confidence 99999999999999999999999999995543 2222111 00 124999999999765555 578
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCCEEE
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGITDFI 252 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~~vi 252 (267)
+++++.+ ++..+++++|++........++++|+|+|+|++|++++++++.+|+.+|+++|++++|++++++ +|++.++
T Consensus 141 ~~~~~~a-al~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~ 219 (350)
T COG1063 141 GIDEEAA-ALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVV 219 (350)
T ss_pred CCChhhh-hhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEee
Confidence 8744444 4555999998864555666666699999999999999999999999999999999999999998 6777777
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
+..+
T Consensus 220 ~~~~ 223 (350)
T COG1063 220 NPSE 223 (350)
T ss_pred cCcc
Confidence 6655
No 20
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=281.24 Aligned_cols=201 Identities=30% Similarity=0.358 Sum_probs=179.2
Q ss_pred ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
||++++..++.| ++++++|.|.|+++||||||.+++||+.|+..+.|..... .++|+++|.|++|+|+++|++|+.|
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~-~~~P~i~G~d~aG~V~avG~~V~~~ 79 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPV-RPLPFIPGSEAAGVVVAVGSGVTGF 79 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCC-CCCCCcccceeEEEEEEeCCCCCCc
Confidence 789999988877 8889999999999999999999999999999999973222 1689999999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||||+.... .+ .+ |+|+||+.+|+..++++|+
T Consensus 80 ~~GdrV~~~~~-------------------------~~--~~-------------------G~~AEy~~v~a~~~~~~P~ 113 (326)
T COG0604 80 KVGDRVAALGG-------------------------VG--RD-------------------GGYAEYVVVPADWLVPLPD 113 (326)
T ss_pred CCCCEEEEccC-------------------------CC--CC-------------------CcceeEEEecHHHceeCCC
Confidence 99999987420 00 22 4999999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++++||++++.+.|||+++.+..++++|++|||+|+ |+||++++|+|+++|+ .++++.+++++.++++++|+++++
T Consensus 114 ~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi 192 (326)
T COG0604 114 GLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVI 192 (326)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEE
Confidence 99999999999999999999888899999999999986 9999999999999999 777766677888899999999999
Q ss_pred CCCCCCcccccccc
Q 024496 253 NPATCGDKTVSQVN 266 (267)
Q Consensus 253 ~~~~~~~~~~~~v~ 266 (267)
||++ ++|.++++
T Consensus 193 ~y~~--~~~~~~v~ 204 (326)
T COG0604 193 NYRE--EDFVEQVR 204 (326)
T ss_pred cCCc--ccHHHHHH
Confidence 9999 88877663
No 21
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=100.00 E-value=1.4e-36 Score=279.99 Aligned_cols=243 Identities=53% Similarity=0.848 Sum_probs=206.8
Q ss_pred cCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCC
Q 024496 10 AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEY 89 (267)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~ 89 (267)
..+..+||++++..++++++++++|.|.+.++||+||+.++++|++|++.+.|.+. . .+|.++|||++|+|+++|++
T Consensus 2 ~~~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~--~~p~v~G~e~~G~V~~vG~~ 78 (373)
T cd08299 2 AGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-T--PFPVILGHEAAGIVESVGEG 78 (373)
T ss_pred CcccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-C--CCCccccccceEEEEEeCCC
Confidence 35567799999999888899999999999999999999999999999999988763 2 57889999999999999999
Q ss_pred CcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceE
Q 024496 90 VEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVV 169 (267)
Q Consensus 90 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~ 169 (267)
++.|++||+|++.+..+|+.|.+|+.+.++.|++.....-.|...+++.++. -.|+..+++.+.|+|+||++++.++++
T Consensus 79 v~~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~e~~~v~~~~~~ 157 (373)
T cd08299 79 VTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVA 157 (373)
T ss_pred CccCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccc-cCCcccccccCCCcccceEEeccccee
Confidence 9999999999998889999999999999999987542100122222222221 012222344445799999999999999
Q ss_pred EcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 170 KITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 170 ~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
++|+++++++++++.+++.++|+++....+++++++|+|+|+|++|++++++|+.+|+++|+++++++++++.++++|++
T Consensus 158 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~ 237 (373)
T cd08299 158 KIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGAT 237 (373)
T ss_pred eCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc
Confidence 99999999999999999999999877888999999999999899999999999999997899999999999999999999
Q ss_pred EEECCCC
Q 024496 250 DFINPAT 256 (267)
Q Consensus 250 ~vi~~~~ 256 (267)
+++++.+
T Consensus 238 ~~i~~~~ 244 (373)
T cd08299 238 ECINPQD 244 (373)
T ss_pred eEecccc
Confidence 9998765
No 22
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=3.9e-36 Score=277.30 Aligned_cols=217 Identities=23% Similarity=0.318 Sum_probs=181.4
Q ss_pred eEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCC
Q 024496 18 AAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERD 97 (267)
Q Consensus 18 a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 97 (267)
+++..+..+++++.+++.|.|+++||+|||.+++||++|++.+.|.+... .+|.++|||++|+|+++|+++++|++||
T Consensus 9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~--~~p~i~GhE~aG~Vv~vG~~v~~~~vGd 86 (375)
T PLN02178 9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFS--RYPIIPGHEIVGIATKVGKNVTKFKEGD 86 (375)
T ss_pred EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCC--CCCcccCceeeEEEEEECCCCCccCCCC
Confidence 34444544558888999999999999999999999999999998876433 5689999999999999999999999999
Q ss_pred EEEeeccC-CCCCCcccccCCCCCCCCCCCCCC----CCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496 98 LVLPIFHR-DCGECRDCKSSKSNTCSKFGRGYR----PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT 172 (267)
Q Consensus 98 ~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~----~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP 172 (267)
||++.+.. +|+.|.+|++|++++|++...... .|...+ |+|+||+++|.++++++|
T Consensus 87 rV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~~~~lP 147 (375)
T PLN02178 87 RVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQ-------------------GGYSDVIVVDHRFVLSIP 147 (375)
T ss_pred EEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCC-------------------CccccEEEEchHHeEECC
Confidence 99876654 699999999999999987543100 011122 499999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh-HHHHHHcCCCE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK-FEIGKKFGITD 250 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~-~~~~~~~G~~~ 250 (267)
+++++++++++.+...|+|+++..... .++|++|+|.|+|++|++++|+|+.+|+ +|+++++++++ .+.++++|+++
T Consensus 148 ~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~ 226 (375)
T PLN02178 148 DGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADS 226 (375)
T ss_pred CCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcE
Confidence 999999999999999999997644332 3689999999999999999999999999 78888776554 67788999999
Q ss_pred EECCCC
Q 024496 251 FINPAT 256 (267)
Q Consensus 251 vi~~~~ 256 (267)
++++++
T Consensus 227 ~i~~~~ 232 (375)
T PLN02178 227 FLVTTD 232 (375)
T ss_pred EEcCcC
Confidence 998765
No 23
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=100.00 E-value=5.9e-36 Score=273.66 Aligned_cols=216 Identities=23% Similarity=0.308 Sum_probs=176.7
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCC-CCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPK-LPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
|||+++..++.+++++++|.|+|+++||||||.+++||++|++.+.|.++... ..+|.++|||++|+|+++|++ ++|+
T Consensus 1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~ 79 (355)
T cd08230 1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS 79 (355)
T ss_pred CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence 68899986554499999999999999999999999999999999998754321 146889999999999999999 9999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
+||||+..+...|+.|.+|++|.+++|+..... ..|.. .+ |+|+||++++.+.++++|+
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~-------------------G~~aey~~~~~~~~~~~P~ 139 (355)
T cd08230 80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLH-------------------GFMREYFVDDPEYLVKVPP 139 (355)
T ss_pred CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCC-------------------ccceeEEEeccccEEECCC
Confidence 999999988889999999999999999764321 01211 12 4899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHH------HHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC---ChhhHHHHH
Q 024496 174 HIPLGIACLLSCGVSTGVGAAW------KVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI---NPEKFEIGK 244 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~------~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~---~~~~~~~~~ 244 (267)
+++ +.+ .+..++++++.++. +..+.++|++|+|+|+|++|++++|+|+++|+ +|+++++ +++|+++++
T Consensus 140 ~~~-~~a-~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~ 216 (355)
T cd08230 140 SLA-DVG-VLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVE 216 (355)
T ss_pred CCC-cce-eecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHH
Confidence 998 433 33345555544332 22336789999999999999999999999999 8999987 688999999
Q ss_pred HcCCCEEECCCC
Q 024496 245 KFGITDFINPAT 256 (267)
Q Consensus 245 ~~G~~~vi~~~~ 256 (267)
++|++. +++++
T Consensus 217 ~~Ga~~-v~~~~ 227 (355)
T cd08230 217 ELGATY-VNSSK 227 (355)
T ss_pred HcCCEE-ecCCc
Confidence 999986 56665
No 24
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=5.9e-36 Score=273.17 Aligned_cols=211 Identities=28% Similarity=0.466 Sum_probs=186.7
Q ss_pred EEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCC-CCCCCCCCcccceeeEEEEEEecCCCcccCCCC
Q 024496 19 AICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST-DLPKLPLPVIFGHEAVGVVESVGEYVEEVKERD 97 (267)
Q Consensus 19 ~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd 97 (267)
+++++++++++++++|.|.|+++||+|||.++++|++|++.+.+.. +.. .+|.++|||++|+|+++|++++.+ +||
T Consensus 2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~--~~p~i~GhE~~G~V~~vG~~v~~~-~Gd 78 (349)
T TIGR03201 2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNH--ALPLALGHEISGRVIQAGAGAASW-IGK 78 (349)
T ss_pred ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccC--CCCeeccccceEEEEEeCCCcCCC-CCC
Confidence 4567777778999999999999999999999999999999874432 222 578999999999999999999887 999
Q ss_pred EEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC----
Q 024496 98 LVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP---- 173 (267)
Q Consensus 98 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~---- 173 (267)
+|++.+..+|+.|.+|+++.+++|..... .|...+| +|+||+.+|.++++++|+
T Consensus 79 rV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~ae~~~v~~~~~~~ip~~~~~ 136 (349)
T TIGR03201 79 AVIVPAVIPCGECELCKTGRGTICRAQKM---PGNDMQG-------------------GFASHIVVPAKGLCVVDEARLA 136 (349)
T ss_pred EEEECCCCCCCCChhhhCcCcccCCCCCc---cCcCCCC-------------------cccceEEechHHeEECCccccc
Confidence 99999999999999999999999976543 2333334 999999999999999999
Q ss_pred --CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 174 --HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 174 --~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
++++++++.+.+.+.++|+++ ...++++|++|+|+|+|++|++++++|+++|+ +|+++++++++++.++++|++++
T Consensus 137 ~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~ 214 (349)
T TIGR03201 137 AAGLPLEHVSVVADAVTTPYQAA-VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADLT 214 (349)
T ss_pred ccCCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceE
Confidence 899999999888999999976 45789999999999999999999999999999 89999999999999999999999
Q ss_pred ECCCC
Q 024496 252 INPAT 256 (267)
Q Consensus 252 i~~~~ 256 (267)
+|+.+
T Consensus 215 i~~~~ 219 (349)
T TIGR03201 215 LNPKD 219 (349)
T ss_pred ecCcc
Confidence 99866
No 25
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=100.00 E-value=1.6e-35 Score=271.91 Aligned_cols=237 Identities=50% Similarity=0.844 Sum_probs=207.3
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
+||+++.+++.++++++++.|.++++||+||+.++++|++|++.+.+.+.. ..|.++|||++|+|+++|++++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~~---~~~~i~g~e~~G~V~~vG~~v~~~~~ 77 (365)
T cd05279 1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPT---PLPVILGHEGAGIVESIGPGVTTLKP 77 (365)
T ss_pred CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCCC---CCCcccccceeEEEEEeCCCcccCCC
Confidence 579999998888999999999999999999999999999999998887542 46789999999999999999999999
Q ss_pred CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496 96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI 175 (267)
Q Consensus 96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~ 175 (267)
||+|++.+..+|++|.+|+.+.+++|+........|...+|+..+-. +|...+||.+.|+|++|+.++.+.++++|+++
T Consensus 78 Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~ 156 (365)
T cd05279 78 GDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTC-KGKPIHHFLGTSTFAEYTVVSEISLAKIDPDA 156 (365)
T ss_pred CCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeec-cCCccccccccccccceEEecCCceEECCCCC
Confidence 99999998889999999999999999887654444544444333311 33334556666899999999999999999999
Q ss_pred ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA 255 (267)
Q Consensus 176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~ 255 (267)
++++++.+.+++.++|+++....+++++++|||+|+|++|++++++|+.+|+..|+++++++++.+.++++|++++++++
T Consensus 157 ~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~ 236 (365)
T cd05279 157 PLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPR 236 (365)
T ss_pred CHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccc
Confidence 99999999989999999887888999999999998899999999999999996788888899999999999999999987
Q ss_pred C
Q 024496 256 T 256 (267)
Q Consensus 256 ~ 256 (267)
+
T Consensus 237 ~ 237 (365)
T cd05279 237 D 237 (365)
T ss_pred c
Confidence 6
No 26
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=2.4e-35 Score=270.21 Aligned_cols=226 Identities=25% Similarity=0.323 Sum_probs=190.1
Q ss_pred cccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496 13 VIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE 92 (267)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 92 (267)
..+++++++..+++++++++++.|.|+++||+|||.+++||++|++.+.|.++.. .+|.++|||++|+|+++|+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~--~~p~i~G~E~~G~Vv~vG~~v~~ 84 (357)
T PLN02514 7 EKKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMS--NYPMVPGHEVVGEVVEVGSDVSK 84 (357)
T ss_pred CceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcC--CCCccCCceeeEEEEEECCCccc
Confidence 3468999999999999999999999999999999999999999999998876543 57899999999999999999999
Q ss_pred cCCCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496 93 VKERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI 171 (267)
Q Consensus 93 ~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i 171 (267)
|++||+|++.+. ..|+.|.+|+++.++.|....+....++ ..| +...|+|+||+++|...++++
T Consensus 85 ~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~-~~g--------------~~~~G~~aey~~v~~~~~~~i 149 (357)
T PLN02514 85 FTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVY-TDG--------------KPTQGGFASAMVVDQKFVVKI 149 (357)
T ss_pred ccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccc-cCC--------------ccCCCccccEEEEchHHeEEC
Confidence 999999986554 3699999999999999987533211000 001 001249999999999999999
Q ss_pred CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCCE
Q 024496 172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFGITD 250 (267)
Q Consensus 172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G~~~ 250 (267)
|+++++++++.+.+.+.+||+++.+....++|++|+|+|+|++|++++|+|+.+|+ +++++++++++++.+ +++|+++
T Consensus 150 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~ 228 (357)
T PLN02514 150 PEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADD 228 (357)
T ss_pred CCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcE
Confidence 99999999999999999999977555556899999999999999999999999999 788887777766554 5799998
Q ss_pred EECCCC
Q 024496 251 FINPAT 256 (267)
Q Consensus 251 vi~~~~ 256 (267)
++++.+
T Consensus 229 ~i~~~~ 234 (357)
T PLN02514 229 YLVSSD 234 (357)
T ss_pred EecCCC
Confidence 887654
No 27
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-35 Score=269.91 Aligned_cols=213 Identities=24% Similarity=0.402 Sum_probs=185.7
Q ss_pred ceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
|||+++..++. ++++++|.|.| +++||+|||.++++|++|++.+..... . .+|.++|||++|+|+++|+++++|+
T Consensus 1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~-~--~~p~i~G~e~~G~V~~vG~~v~~~~ 76 (347)
T PRK10309 1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA-H--YYPITLGHEFSGYVEAVGSGVDDLH 76 (347)
T ss_pred CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC-C--CCCcccccceEEEEEEeCCCCCCCC
Confidence 78999998876 99999999997 589999999999999999975432211 1 4678999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~ 174 (267)
+||+|++.+..+|+.|++|..|.+++|..... .|...+ |+|+||+.++.+.++++|++
T Consensus 77 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~-------------------G~~aey~~v~~~~~~~lP~~ 134 (347)
T PRK10309 77 PGDAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSRRD-------------------GGNAEYIVVKRKNLFALPTD 134 (347)
T ss_pred CCCEEEECCCcCCCCCcchhCcCcccCCCcce---eccCCC-------------------CccceeEEeehHHeEECcCC
Confidence 99999999999999999999999999976432 333333 49999999999999999999
Q ss_pred CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496 175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP 254 (267)
Q Consensus 175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~ 254 (267)
+++++++++. .+++++++ .+...++++++|+|+|+|++|++++|+|+.+|++.|+++++++++++.++++|+++++|+
T Consensus 135 ~s~~~aa~~~-~~~~~~~~-~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~ 212 (347)
T PRK10309 135 MPIEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNS 212 (347)
T ss_pred CCHHHhhhhh-HHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecC
Confidence 9999998874 55667886 466788999999999999999999999999999668999999999999999999999998
Q ss_pred CC
Q 024496 255 AT 256 (267)
Q Consensus 255 ~~ 256 (267)
++
T Consensus 213 ~~ 214 (347)
T PRK10309 213 RE 214 (347)
T ss_pred cc
Confidence 76
No 28
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=100.00 E-value=9.1e-35 Score=266.96 Aligned_cols=239 Identities=37% Similarity=0.682 Sum_probs=200.3
Q ss_pred ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
|+|||+++.++++++++++.+.|.+.++||+||+.++++|++|++...+.++. ..|.++|||++|+|+++|+++.+|
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~~---~~p~v~G~e~~G~V~~vG~~v~~~ 77 (365)
T cd08278 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLPT---PLPAVLGHEGAGVVEAVGSAVTGL 77 (365)
T ss_pred CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCCC---CCCcccccceeEEEEEeCCCcccC
Confidence 68999999998777999999999999999999999999999999999887652 468899999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCcee-cccccccceeeeEEeeccceEEcC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVI-HHFLNISSFTEYSVVDITHVVKIT 172 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~-~~~~~~g~~a~y~~v~~~~~~~iP 172 (267)
++||+|++.+. .|++|.+|+.+.+++|.+.......|...+|--...+..|+.+ .++...|+|++|+.++..+++++|
T Consensus 78 ~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP 156 (365)
T cd08278 78 KPGDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVD 156 (365)
T ss_pred CCCCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECC
Confidence 99999998764 8999999999999999865432222222222000000001000 112234699999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
+++++++++.+.+.+.+|+.++.....++++++|+|+|+|.+|++++++|+++|++.++++++++++.++++++|+++++
T Consensus 157 ~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i 236 (365)
T cd08278 157 KDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVI 236 (365)
T ss_pred CCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEe
Confidence 99999999999999999999877788899999999998899999999999999997799999999999999999999999
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
++++
T Consensus 237 ~~~~ 240 (365)
T cd08278 237 NPKE 240 (365)
T ss_pred cCCC
Confidence 9877
No 29
>PRK10083 putative oxidoreductase; Provisional
Probab=100.00 E-value=9.9e-35 Score=263.11 Aligned_cols=214 Identities=27% Similarity=0.425 Sum_probs=190.6
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
|||+++.+++. +++++++.|.|+++||+||+.++++|++|++.+.|.++.. ++|.++|||++|+|+++|++++.|++
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~--~~p~i~G~e~~G~V~~vG~~v~~~~~ 77 (339)
T PRK10083 1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFA--KYPRVIGHEFFGVIDAVGEGVDAARI 77 (339)
T ss_pred CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcC--CCCcccccceEEEEEEECCCCccCCC
Confidence 68999998876 9999999999999999999999999999999998876543 57899999999999999999999999
Q ss_pred CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496 96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI 175 (267)
Q Consensus 96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~ 175 (267)
||+|++.+..+|+.|.+|..+.+++|.+... .++..+ |+|++|+.++.++++++|+++
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~ip~~~ 135 (339)
T PRK10083 78 GERVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVHRD-------------------GGFSEYAVVPAKNAHRIPDAI 135 (339)
T ss_pred CCEEEEccccCCCCCccccCcCcccCCCCce---EEEccC-------------------CcceeeEEechHHeEECcCCC
Confidence 9999999999999999999999999976442 222223 389999999999999999999
Q ss_pred ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARL-NRASKIIGVDINPEKFEIGKKFGITDFINP 254 (267)
Q Consensus 176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~-~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~ 254 (267)
++++++. ...+.++|+ +....++++|++|+|+|+|.+|++++++|+. +|+..++++++++++.++++++|+++++++
T Consensus 136 ~~~~a~~-~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~ 213 (339)
T PRK10083 136 ADQYAVM-VEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINN 213 (339)
T ss_pred CHHHHhh-hchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecC
Confidence 9988764 457888886 5677899999999999999999999999996 699778889999999999999999999998
Q ss_pred CC
Q 024496 255 AT 256 (267)
Q Consensus 255 ~~ 256 (267)
++
T Consensus 214 ~~ 215 (339)
T PRK10083 214 AQ 215 (339)
T ss_pred cc
Confidence 76
No 30
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=100.00 E-value=1.8e-34 Score=263.07 Aligned_cols=221 Identities=30% Similarity=0.443 Sum_probs=191.7
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCC-CCC--------CCCCCcccceeeEEEEEEe
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST-DLP--------KLPLPVIFGHEAVGVVESV 86 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~--------~~~~p~~~G~e~~G~V~~v 86 (267)
|||+++.+++. ++++++|.|.|.++||+||+.++++|++|++.+.+.. ... ....|.++|||++|+|+++
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v 79 (351)
T cd08233 1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV 79 (351)
T ss_pred CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence 78999998776 9999999999999999999999999999988765321 100 0136889999999999999
Q ss_pred cCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeec
Q 024496 87 GEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDI 165 (267)
Q Consensus 87 G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~ 165 (267)
|++++.|++||+|+..+...|+.|.+|+++.+++|.+... .|+. .+ |+|++|+.++.
T Consensus 80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~a~~~~~~~ 137 (351)
T cd08233 80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGG-------------------GGFAEYVVVPA 137 (351)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCC-------------------CceeeEEEech
Confidence 9999999999999999889999999999999999976542 2221 12 48999999999
Q ss_pred cceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 166 THVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 166 ~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
.+++++|+++++++++.+ .++.+||+++ ...+++++++|+|+|+|.+|++++|+|+.+|+++|+++++++++.+++++
T Consensus 138 ~~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~ 215 (351)
T cd08233 138 YHVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE 215 (351)
T ss_pred HHeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 999999999999998876 5778999976 78889999999999999999999999999999889999999999999999
Q ss_pred cCCCEEECCCCCCccccc
Q 024496 246 FGITDFINPATCGDKTVS 263 (267)
Q Consensus 246 ~G~~~vi~~~~~~~~~~~ 263 (267)
+|++.++|+++ +++.+
T Consensus 216 ~ga~~~i~~~~--~~~~~ 231 (351)
T cd08233 216 LGATIVLDPTE--VDVVA 231 (351)
T ss_pred hCCCEEECCCc--cCHHH
Confidence 99999999887 55543
No 31
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=100.00 E-value=2.7e-34 Score=260.32 Aligned_cols=219 Identities=26% Similarity=0.423 Sum_probs=194.7
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
|||+++..++++++++++|.|.+.++||+||+.++++|++|+..+.|..+.. ..|.++|||++|+|+++|+++++|++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~--~~p~~~g~e~~G~v~~vG~~v~~~~~ 78 (333)
T cd08296 1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGL--SYPRVPGHEVVGRIDAVGEGVSRWKV 78 (333)
T ss_pred CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCC--CCCcccCcceeEEEEEECCCCccCCC
Confidence 7999999986669999999999999999999999999999999998866433 56889999999999999999999999
Q ss_pred CCEEEeec-cCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496 96 RDLVLPIF-HRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174 (267)
Q Consensus 96 Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~ 174 (267)
||+|++.+ ...|+.|.+|..|.++.|..... .|+..+| +|++|+.++...++++|++
T Consensus 79 Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~~~g-------------------~~a~~~~v~~~~~~~lp~~ 136 (333)
T cd08296 79 GDRVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVTRDG-------------------GYAEYMLAPAEALARIPDD 136 (333)
T ss_pred CCEEEeccccCCCCCChhhhCcCcccCCCCCc---cCcccCC-------------------cceeEEEEchhheEeCCCC
Confidence 99998754 46799999999999999987553 3333333 8999999999999999999
Q ss_pred CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496 175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP 254 (267)
Q Consensus 175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~ 254 (267)
+++++++.+.+.+.++|+++. ...+.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++++.++++|+++++++
T Consensus 137 ~~~~~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~ 214 (333)
T cd08296 137 LDAAEAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDT 214 (333)
T ss_pred CCHHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecC
Confidence 999999999999999999764 4589999999999999999999999999999 89999999999999999999999998
Q ss_pred CCCCcccc
Q 024496 255 ATCGDKTV 262 (267)
Q Consensus 255 ~~~~~~~~ 262 (267)
++ +++.
T Consensus 215 ~~--~~~~ 220 (333)
T cd08296 215 SK--EDVA 220 (333)
T ss_pred CC--ccHH
Confidence 77 5443
No 32
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=100.00 E-value=2.9e-34 Score=262.61 Aligned_cols=223 Identities=26% Similarity=0.431 Sum_probs=194.3
Q ss_pred eeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc----
Q 024496 17 KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE---- 92 (267)
Q Consensus 17 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~---- 92 (267)
|++++.++++++++++++.|.|+++||+|||.++++|++|+....|.++.. .+|.++|||++|+|+++|++++.
T Consensus 2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~--~~p~~~G~e~~G~V~~vG~~v~~~~~~ 79 (361)
T cd08231 2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRV--PLPIILGHEGVGRVVALGGGVTTDVAG 79 (361)
T ss_pred eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCC--CCCcccccCCceEEEEeCCCccccccC
Confidence 789999988779999999999999999999999999999999998876532 57889999999999999999986
Q ss_pred --cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc-ceE
Q 024496 93 --VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT-HVV 169 (267)
Q Consensus 93 --~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~-~~~ 169 (267)
|++||+|+..+..+|+.|.+|+.+.+++|++... .|...+- +.....|+|++|+.++.+ .++
T Consensus 80 ~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~---~~~~~~~------------~~~~~~g~~a~~~~v~~~~~~~ 144 (361)
T cd08231 80 EPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK---YGHEASC------------DDPHLSGGYAEHIYLPPGTAIV 144 (361)
T ss_pred CccCCCCEEEEcccCCCCCChhHhCcCccccccchh---ccccccc------------cCCCCCcccceEEEecCCCceE
Confidence 9999999999999999999999999999988654 2221110 000012599999999986 799
Q ss_pred EcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 170 KITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 170 ~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
++|+++++.+++++++++.|||+++.+.....++++|||+|+|.+|++++++|+.+|+++|+++++++++.++++++|++
T Consensus 145 ~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~ 224 (361)
T cd08231 145 RVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGAD 224 (361)
T ss_pred ECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCC
Confidence 99999999999999889999999876666667999999999999999999999999997899999999999999999999
Q ss_pred EEECCCC
Q 024496 250 DFINPAT 256 (267)
Q Consensus 250 ~vi~~~~ 256 (267)
+++++++
T Consensus 225 ~vi~~~~ 231 (361)
T cd08231 225 ATIDIDE 231 (361)
T ss_pred eEEcCcc
Confidence 9998876
No 33
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=100.00 E-value=2.4e-34 Score=262.30 Aligned_cols=222 Identities=28% Similarity=0.349 Sum_probs=194.6
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
|||+++.+++. +++++++.|.++++||+||+.++++|++|++.+.+.+... ..|.++|||++|+|+++|+.+++|++
T Consensus 1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~--~~~~~~G~e~~G~V~~vG~~v~~~~~ 77 (351)
T cd08285 1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGE--RHGMILGHEAVGVVEEVGSEVKDFKP 77 (351)
T ss_pred CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCC--CCCcccCcceEEEEEEecCCcCccCC
Confidence 79999999886 8899999998999999999999999999999888765443 56899999999999999999999999
Q ss_pred CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcCC
Q 024496 96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKITP 173 (267)
Q Consensus 96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP~ 173 (267)
||+|+..+..+|+.|..|..|.++.|.+...+...+...+ |+|++|+.++.+ .++++|+
T Consensus 78 Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~-------------------g~~~~y~~v~~~~~~~~~lP~ 138 (351)
T cd08285 78 GDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKD-------------------GVFAEYFHVNDADANLAPLPD 138 (351)
T ss_pred CCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCC-------------------cceeEEEEcchhhCceEECCC
Confidence 9999998888999999999999999987532111111122 499999999974 8999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~ 253 (267)
++++++++.+++.+.+++++ .....++++++|||+|+|++|++++++|+.+|+..++++++++++.++++++|++++++
T Consensus 139 ~~~~~~aa~~~~~~~ta~~~-~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~ 217 (351)
T cd08285 139 GLTDEQAVMLPDMMSTGFHG-AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVD 217 (351)
T ss_pred CCCHHHhhhhccchhhHHHH-HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEec
Confidence 99999999998899999997 57788999999999988999999999999999977999999999999999999999999
Q ss_pred CCCCCcccc
Q 024496 254 PATCGDKTV 262 (267)
Q Consensus 254 ~~~~~~~~~ 262 (267)
+++ +++.
T Consensus 218 ~~~--~~~~ 224 (351)
T cd08285 218 YKN--GDVV 224 (351)
T ss_pred CCC--CCHH
Confidence 876 4443
No 34
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=100.00 E-value=1.3e-34 Score=263.75 Aligned_cols=209 Identities=19% Similarity=0.175 Sum_probs=171.8
Q ss_pred ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCC--CCCCCcccceeeEEEEEEecCCCc
Q 024496 14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP--KLPLPVIFGHEAVGVVESVGEYVE 91 (267)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~--~~~~p~~~G~e~~G~V~~vG~~v~ 91 (267)
|+.+++++..+++ ++++++|.|. +++||||||+++|||++|++.+.|.+... ...+|.++|||++|+|+++|.+
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~-- 76 (341)
T cd08237 1 MINQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG-- 76 (341)
T ss_pred CcccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence 4568999999987 9999999995 99999999999999999999999875321 1257999999999999998865
Q ss_pred ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496 92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI 171 (267)
Q Consensus 92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i 171 (267)
+|++||||++.+...|+ |.+| +..++|....+ .|...+| +|+||+++|.++++++
T Consensus 77 ~~~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v 131 (341)
T cd08237 77 TYKVGTKVVMVPNTPVE-KDEI--IPENYLPSSRF---RSSGYDG-------------------FMQDYVFLPPDRLVKL 131 (341)
T ss_pred ccCCCCEEEECCCCCch-hccc--chhccCCCcce---eEecCCC-------------------ceEEEEEEchHHeEEC
Confidence 79999999998877787 4355 45678866543 2222334 8999999999999999
Q ss_pred CCCCChhhhhhcchhhhhHHHHHHH--HhCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHHHHHHcCC
Q 024496 172 TPHIPLGIACLLSCGVSTGVGAAWK--VAGVEVGSTVAIFGLGAVGLAVAEGARL-NRASKIIGVDINPEKFEIGKKFGI 248 (267)
Q Consensus 172 P~~~~~~~aa~l~~~~~ta~~a~~~--~~~~~~g~~VlI~G~g~vG~~a~~la~~-~g~~~vi~~~~~~~~~~~~~~~G~ 248 (267)
|+++++++|+++. +++++|+++.. ...+++|++|||+|+|++|++++|+++. +|..+|++++++++|+++++++++
T Consensus 132 P~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~ 210 (341)
T cd08237 132 PDNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE 210 (341)
T ss_pred CCCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc
Confidence 9999999888665 88889997654 3457899999999999999999999986 666689999999999999887666
Q ss_pred CEEE
Q 024496 249 TDFI 252 (267)
Q Consensus 249 ~~vi 252 (267)
+..+
T Consensus 211 ~~~~ 214 (341)
T cd08237 211 TYLI 214 (341)
T ss_pred eeeh
Confidence 5433
No 35
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=100.00 E-value=1.6e-33 Score=255.58 Aligned_cols=218 Identities=35% Similarity=0.515 Sum_probs=194.3
Q ss_pred ceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
||++++.+++. +.+.++|.|.| .++||+||+.++++|++|++.+.+.++.. ++|.++|||++|+|+++|+++++|+
T Consensus 1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~ 77 (347)
T cd05278 1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGA--KHGMILGHEFVGEVVEVGSDVKRLK 77 (347)
T ss_pred CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCC--CCCceeccceEEEEEEECCCccccC
Confidence 68999998877 89999999999 89999999999999999999998877644 6789999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKIT 172 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP 172 (267)
+||+|+..+.+.|+.|.+|..+.+++|+....+...+...+ |+|++|++++.+ +++++|
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------g~~~~~~~v~~~~~~~~~lP 138 (347)
T cd05278 78 PGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRID-------------------GGQAEYVRVPYADMNLAKIP 138 (347)
T ss_pred CCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCC-------------------CeeeEEEEecchhCeEEECC
Confidence 99999999999999999999999999987553221222223 499999999987 899999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
+++++++++.+++.+.+||+++ ...+++++++|||.|+|.+|++++++|+.+|+.+|+++++++++.++++++|+++++
T Consensus 139 ~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi 217 (347)
T cd05278 139 DGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDII 217 (347)
T ss_pred CCCCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEE
Confidence 9999999999999999999976 678899999999988899999999999999976888888889999999999999999
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
++++
T Consensus 218 ~~~~ 221 (347)
T cd05278 218 NPKN 221 (347)
T ss_pred cCCc
Confidence 9877
No 36
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=239.75 Aligned_cols=203 Identities=31% Similarity=0.298 Sum_probs=186.8
Q ss_pred cCccccceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEec
Q 024496 10 AGKVIRCKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG 87 (267)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG 87 (267)
...|+..|.+++.+.|.. +++++.|.|+|+++|++||..++|+|..|..+.+|.+... +.|++||-|++|+|+++|
T Consensus 3 ~~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~--plPytpGmEaaGvVvAvG 80 (336)
T KOG1197|consen 3 AASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPA--PLPYTPGMEAAGVVVAVG 80 (336)
T ss_pred CCCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCC--CCCcCCCcccceEEEEec
Confidence 346788999999998887 7889999999999999999999999999999999999755 899999999999999999
Q ss_pred CCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc
Q 024496 88 EYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH 167 (267)
Q Consensus 88 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~ 167 (267)
++|++|++||||..... . |.|+|+..+|...
T Consensus 81 ~gvtdrkvGDrVayl~~------------------------------~-------------------g~yaee~~vP~~k 111 (336)
T KOG1197|consen 81 EGVTDRKVGDRVAYLNP------------------------------F-------------------GAYAEEVTVPSVK 111 (336)
T ss_pred CCccccccccEEEEecc------------------------------c-------------------hhhheecccccee
Confidence 99999999999965321 1 4899999999999
Q ss_pred eEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496 168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF 246 (267)
Q Consensus 168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~ 246 (267)
++++|+++++.+||++.+.+.|||.-+++-.++++|++|||+.+ |++|++++|++++.|+ .+|++.++.+|.+.+++.
T Consensus 112 v~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~aken 190 (336)
T KOG1197|consen 112 VFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKEN 190 (336)
T ss_pred eccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhc
Confidence 99999999999999999999999997788889999999999965 9999999999999999 999999999999999999
Q ss_pred CCCEEECCCCCCcccccccc
Q 024496 247 GITDFINPATCGDKTVSQVN 266 (267)
Q Consensus 247 G~~~vi~~~~~~~~~~~~v~ 266 (267)
|++|.|+++. +|++++|+
T Consensus 191 G~~h~I~y~~--eD~v~~V~ 208 (336)
T KOG1197|consen 191 GAEHPIDYST--EDYVDEVK 208 (336)
T ss_pred CCcceeeccc--hhHHHHHH
Confidence 9999999999 99888763
No 37
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=100.00 E-value=5.3e-33 Score=251.68 Aligned_cols=219 Identities=29% Similarity=0.440 Sum_probs=195.5
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC-CCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL-PKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
||++++..+++++++.+.+.|.+++++|+||+.++++|++|+....|.+.. ....+|.++|||++|+|+++|+++.+|+
T Consensus 1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~ 80 (340)
T cd05284 1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK 80 (340)
T ss_pred CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence 689999988777999999999999999999999999999999998887642 1125688999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~ 174 (267)
+||+|+..+...|+.|..|..|.+++|++..+ .|...+| +|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~P~~ 138 (340)
T cd05284 81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIGTDG-------------------GFAEYLLVPSRRLVKLPRG 138 (340)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCccCCC-------------------cceeeEEecHHHeEECCCC
Confidence 99999999999999999999999999988765 3443344 9999999999999999999
Q ss_pred CChhhhhhcchhhhhHHHHHHHH-hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496 175 IPLGIACLLSCGVSTGVGAAWKV-AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253 (267)
Q Consensus 175 ~~~~~aa~l~~~~~ta~~a~~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~ 253 (267)
+++++++.+++.+.+||+++... ..+.++++|||+|+|.+|++++++|+.+|..+|+++++++++.+.++++|++++++
T Consensus 139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~ 218 (340)
T cd05284 139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLN 218 (340)
T ss_pred CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEc
Confidence 99999999999999999987665 46889999999999889999999999999338999998999999999999999999
Q ss_pred CCC
Q 024496 254 PAT 256 (267)
Q Consensus 254 ~~~ 256 (267)
+++
T Consensus 219 ~~~ 221 (340)
T cd05284 219 ASD 221 (340)
T ss_pred CCc
Confidence 876
No 38
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=100.00 E-value=6.5e-33 Score=252.74 Aligned_cols=216 Identities=28% Similarity=0.469 Sum_probs=189.6
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC-------CCCCCCcccceeeEEEEEEecC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL-------PKLPLPVIFGHEAVGVVESVGE 88 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-------~~~~~p~~~G~e~~G~V~~vG~ 88 (267)
|||+++.+++. +++++++.|.+.+++|+||+.++++|++|+..+.|.+.. ....+|.++|||++|+|+++|+
T Consensus 1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~ 79 (350)
T cd08256 1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE 79 (350)
T ss_pred CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence 78999998876 999999999999999999999999999999988775311 0013577899999999999999
Q ss_pred CCc--ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCC--CCCCCccccccCCceecccccccceeeeEEee
Q 024496 89 YVE--EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM--PRDGTSRFRELKGDVIHHFLNISSFTEYSVVD 164 (267)
Q Consensus 89 ~v~--~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~--~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~ 164 (267)
.++ +|++||+|+..+.++|+.|.+|+.+++++|..... .|+ ..+ |+|++|+.++
T Consensus 80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~-------------------g~~~~~~~~~ 137 (350)
T cd08256 80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQNNVN-------------------GGMAEYMRFP 137 (350)
T ss_pred CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeeccCCC-------------------CcceeeEEcc
Confidence 999 89999999999999999999999999999975432 222 123 4999999999
Q ss_pred cc-ceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 165 IT-HVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 165 ~~-~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+ .++++|+++++++++.+ .++.++|+++ +..++.++++|+|.|+|.+|++++++|+++|+..++++++++++.+++
T Consensus 138 ~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~ 215 (350)
T cd08256 138 KEAIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALA 215 (350)
T ss_pred cccceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHH
Confidence 88 57899999999999988 7999999976 788999999999988899999999999999997788999999999999
Q ss_pred HHcCCCEEECCCC
Q 024496 244 KKFGITDFINPAT 256 (267)
Q Consensus 244 ~~~G~~~vi~~~~ 256 (267)
+++|+++++++++
T Consensus 216 ~~~g~~~v~~~~~ 228 (350)
T cd08256 216 RKFGADVVLNPPE 228 (350)
T ss_pred HHcCCcEEecCCC
Confidence 9999999998876
No 39
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=100.00 E-value=1.3e-32 Score=254.66 Aligned_cols=233 Identities=29% Similarity=0.377 Sum_probs=192.8
Q ss_pred ceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
|||+++.+++. ++++++|.|.| ++++|+||+.+++||++|+..+.|.++.. ++|.++|||++|+|+++|+++++|+
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~--~~p~~~G~e~~G~V~~vG~~v~~~~ 77 (386)
T cd08283 1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGM--KKGDILGHEFMGVVEEVGPEVRNLK 77 (386)
T ss_pred CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCC--CCCccccccceEEEEEeCCCCCCCC
Confidence 78999998755 99999999988 59999999999999999999999987654 5789999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCC-CCCCCCCCCccccccCCceeccc-ccccceeeeEEeecc--ceEE
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGY-RPNMPRDGTSRFRELKGDVIHHF-LNISSFTEYSVVDIT--HVVK 170 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~-~~g~~~~g~~~~~~~~~~~~~~~-~~~g~~a~y~~v~~~--~~~~ 170 (267)
+||+|+..+...|++|++|+.+.++.|++..... ..+ .+|.... ...+ ....+ +..|+|++|++++.+ .+++
T Consensus 78 ~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~-~~~~~~~~~g~~~~~~~v~~~~~~~~~ 153 (386)
T cd08283 78 VGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAK--LYGHAGA-GIFG-YSHLTGGYAGGQAEYVRVPFADVGPFK 153 (386)
T ss_pred CCCEEEEcCcCCCCCChhhcCCCcccCCCccccccccc--ccccccc-cccc-cccccCCCCCeeEEEEEcccccCeEEE
Confidence 9999999988899999999999999998754321 000 0000000 0000 00000 113699999999987 8999
Q ss_pred cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496 171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD 250 (267)
Q Consensus 171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~ 250 (267)
+|+++++++++.+++.+.+||+++ ....+.++++|||+|+|.+|++++++|+++|+.+|+++++++++.+.+++++...
T Consensus 154 lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~ 232 (386)
T cd08283 154 IPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAE 232 (386)
T ss_pred CCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcE
Confidence 999999999999999999999987 7788999999999988999999999999999867999999999999999985457
Q ss_pred EECCCC
Q 024496 251 FINPAT 256 (267)
Q Consensus 251 vi~~~~ 256 (267)
++++++
T Consensus 233 vi~~~~ 238 (386)
T cd08283 233 TINFEE 238 (386)
T ss_pred EEcCCc
Confidence 888776
No 40
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=100.00 E-value=1.9e-32 Score=251.13 Aligned_cols=236 Identities=42% Similarity=0.685 Sum_probs=197.0
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
|||+++..++.++++++++.|.++++||+||+.++++|+.|+..+.+.++. .+|.++|+|++|+|+++|++++.|++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~---~~~~~~g~e~~G~V~~vG~~v~~~~~ 77 (363)
T cd08279 1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPA---PLPAVLGHEGAGVVEEVGPGVTGVKP 77 (363)
T ss_pred CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCCC---CCCccccccceEEEEEeCCCccccCC
Confidence 799999999888999999999999999999999999999999988887652 56789999999999999999999999
Q ss_pred CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496 96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI 175 (267)
Q Consensus 96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~ 175 (267)
||+|+..+..+|++|.+|.++.++.|+...... +|...++..++-- -|.....++..|+|++|+.++.+.++++|+++
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 155 (363)
T cd08279 78 GDHVVLSWIPACGTCRYCSRGQPNLCDLGAGIL-GGQLPDGTRRFTA-DGEPVGAMCGLGTFAEYTVVPEASVVKIDDDI 155 (363)
T ss_pred CCEEEECCCCCCCCChhhcCCCcccCccccccc-ccccCCCcccccc-cCccccccccCccceeeEEeccccEEECCCCC
Confidence 999999999999999999999999997643110 1111111000000 00000001223699999999999999999999
Q ss_pred ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA 255 (267)
Q Consensus 176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~ 255 (267)
++++++++++.+.+||.++....++.++++|||+|+|.+|++++++|+.+|+.+|+++++++++.+.++++|++++++++
T Consensus 156 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~ 235 (363)
T cd08279 156 PLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNAS 235 (363)
T ss_pred ChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCC
Confidence 99999999999999999888888899999999998899999999999999996699999999999999999999999987
Q ss_pred C
Q 024496 256 T 256 (267)
Q Consensus 256 ~ 256 (267)
+
T Consensus 236 ~ 236 (363)
T cd08279 236 E 236 (363)
T ss_pred C
Confidence 6
No 41
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=100.00 E-value=5.6e-32 Score=245.80 Aligned_cols=216 Identities=31% Similarity=0.494 Sum_probs=194.9
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
|||+++.+++.++++++.+.|.+.++||+||+.++++|++|+....|..+.. .+|.++|+|++|+|+++|+.++.|++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~--~~~~~~g~e~~G~V~~~G~~~~~~~~ 78 (345)
T cd08260 1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDV--TLPHVPGHEFAGVVVEVGEDVSRWRV 78 (345)
T ss_pred CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCC--CCCeeeccceeEEEEEECCCCccCCC
Confidence 7999999888889999999999999999999999999999999998876643 56889999999999999999999999
Q ss_pred CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcCC
Q 024496 96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKITP 173 (267)
Q Consensus 96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP~ 173 (267)
||+|+..+...|++|.+|+.|.+++|+.... .++..+| +|++|++++.. +++++|+
T Consensus 79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~iP~ 136 (345)
T cd08260 79 GDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFTHPG-------------------SFAEYVAVPRADVNLVRLPD 136 (345)
T ss_pred CCEEEECCCCCCCCCccccCcCcccCCCCcc---cccCCCC-------------------cceeEEEcccccCceEECCC
Confidence 9999886777899999999999999998643 3333334 89999999975 8999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~ 253 (267)
++++++++.+.+.+.+||+++....++.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++++++
T Consensus 137 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~ 215 (345)
T cd08260 137 DVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVN 215 (345)
T ss_pred CCCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEc
Confidence 999999999998999999987777889999999999999999999999999999 8999999999999999999999999
Q ss_pred CCC
Q 024496 254 PAT 256 (267)
Q Consensus 254 ~~~ 256 (267)
+++
T Consensus 216 ~~~ 218 (345)
T cd08260 216 ASE 218 (345)
T ss_pred ccc
Confidence 875
No 42
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=100.00 E-value=4.4e-32 Score=246.49 Aligned_cols=217 Identities=32% Similarity=0.423 Sum_probs=193.1
Q ss_pred ceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
||++++..++. +++++++.|+| .++||+||++++++|++|+..+.|.++.. .+|.++|||++|+|+++|+++++++
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~--~~~~~~g~e~~G~V~~~G~~v~~~~ 77 (345)
T cd08286 1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTV--TPGRILGHEGVGVVEEVGSAVTNFK 77 (345)
T ss_pred CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCC--CCCceecccceEEEEEeccCccccC
Confidence 78999998887 99999999986 79999999999999999999998876544 4588999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKIT 172 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP 172 (267)
+||+|++.+...|+.|++|..+.++.|....+. .|...+ |+|++|+.++.. .++++|
T Consensus 78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------g~~~~~~~v~~~~~~~~~lp 136 (345)
T cd08286 78 VGDRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNLID-------------------GTQAEYVRIPHADNSLYKLP 136 (345)
T ss_pred CCCEEEECCcCCCCCChHHHCcCcccCCCcccc--cccccC-------------------CeeeeEEEcccccCceEECC
Confidence 999999998889999999999999999765432 122223 489999999987 899999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++..+++.+.+.+.+||+++....++.++++|||.|+|.+|++++++|+.+|+.+|+++++++++.+.++++|+++++
T Consensus 137 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v 216 (345)
T cd08286 137 EGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTV 216 (345)
T ss_pred CCCCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCcee
Confidence 99999999999989999999777778899999999998899999999999999955899999999999999999999999
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
++++
T Consensus 217 ~~~~ 220 (345)
T cd08286 217 NSAK 220 (345)
T ss_pred cccc
Confidence 9876
No 43
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=100.00 E-value=3.3e-32 Score=247.91 Aligned_cols=219 Identities=32% Similarity=0.477 Sum_probs=192.9
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC----------CCCCCCcccceeeEEEEEE
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL----------PKLPLPVIFGHEAVGVVES 85 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----------~~~~~p~~~G~e~~G~V~~ 85 (267)
|||+++..++.+++++++|.|.+.++||+||+.++++|++|++.+.+.++. ....+|.++|||++|+|++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~ 80 (350)
T cd08240 1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA 80 (350)
T ss_pred CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence 789999988888999999999999999999999999999999998876532 0014567899999999999
Q ss_pred ecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 024496 86 VGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI 165 (267)
Q Consensus 86 vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~ 165 (267)
+|++++++++||+|+..+...|+.|.+|.++.+++|.+... .|.... |++++|+.++.
T Consensus 81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~ 138 (350)
T cd08240 81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIFQD-------------------GGYAEYVIVPH 138 (350)
T ss_pred eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeeecc-------------------CcceeeEEecH
Confidence 99999999999999999999999999999999999966432 122222 48999999999
Q ss_pred cceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 166 THVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 166 ~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
..++++|+++++.+++.+.+.+.+||+++.....+.++++|+|+|+|.+|++++++|+.+|+++|+++++++++.+.+++
T Consensus 139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~ 218 (350)
T cd08240 139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA 218 (350)
T ss_pred HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 99999999999999999999999999977665666789999999889999999999999999889999999999999999
Q ss_pred cCCCEEECCCC
Q 024496 246 FGITDFINPAT 256 (267)
Q Consensus 246 ~G~~~vi~~~~ 256 (267)
+|++.++++++
T Consensus 219 ~g~~~~~~~~~ 229 (350)
T cd08240 219 AGADVVVNGSD 229 (350)
T ss_pred hCCcEEecCCC
Confidence 99999998876
No 44
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=100.00 E-value=5.8e-32 Score=250.45 Aligned_cols=224 Identities=20% Similarity=0.148 Sum_probs=190.3
Q ss_pred CccccceeEEeec--CCC---CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCC--------CCCCCcccce
Q 024496 11 GKVIRCKAAICRI--PGK---PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP--------KLPLPVIFGH 77 (267)
Q Consensus 11 ~~~~~~~a~~~~~--~~~---~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~--------~~~~p~~~G~ 77 (267)
..|.+|+|+++.. .+. .++++++|.|.++++||+||+.+++||++|++...+..... ....+.++||
T Consensus 8 ~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~ 87 (393)
T cd08246 8 VVPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGS 87 (393)
T ss_pred cCchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCcccccc
Confidence 4788999999863 332 27889999999999999999999999999998877652100 0012358999
Q ss_pred eeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccce
Q 024496 78 EAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSF 157 (267)
Q Consensus 78 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~ 157 (267)
|++|+|+++|++++.|++||+|++.+...|+.|..|..+.+++|+.... .|... ..|+|
T Consensus 88 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~------------------~~g~~ 146 (393)
T cd08246 88 DASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYET------------------NYGSF 146 (393)
T ss_pred ceEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccC------------------CCCcc
Confidence 9999999999999999999999999999999999999999999976433 22211 11489
Q ss_pred eeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHH--hCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 024496 158 TEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKV--AGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD 234 (267)
Q Consensus 158 a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~--~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~ 234 (267)
++|++++..+++++|+++++++++.+.+.+.+||+++... ++++++++|+|+|+ |++|++++++|+.+|+ ++++++
T Consensus 147 a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~ 225 (393)
T cd08246 147 AQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVV 225 (393)
T ss_pred eeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEe
Confidence 9999999999999999999999999999999999986544 67899999999997 9999999999999999 777888
Q ss_pred CChhhHHHHHHcCCCEEECCCC
Q 024496 235 INPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 235 ~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
+++++++.++++|+++++|+++
T Consensus 226 ~s~~~~~~~~~~G~~~~i~~~~ 247 (393)
T cd08246 226 SSEEKAEYCRALGAEGVINRRD 247 (393)
T ss_pred CCHHHHHHHHHcCCCEEEcccc
Confidence 8999999999999999999865
No 45
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=100.00 E-value=1.2e-31 Score=242.54 Aligned_cols=214 Identities=29% Similarity=0.434 Sum_probs=190.0
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
||++++.+++....++++|.|.++++||+||+.++++|++|++.+.|..+. ..|.++|||++|+|+++|+++++|++
T Consensus 1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~---~~~~~~g~e~~G~V~~~G~~v~~~~~ 77 (338)
T PRK09422 1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD---KTGRILGHEGIGIVKEVGPGVTSLKV 77 (338)
T ss_pred CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC---CCCccCCcccceEEEEECCCCccCCC
Confidence 799999988874448999999999999999999999999999988887543 34678999999999999999999999
Q ss_pred CCEEEeec-cCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496 96 RDLVLPIF-HRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174 (267)
Q Consensus 96 Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~ 174 (267)
||+|++.+ ..+|+.|.+|..+.+++|..... .|...+| +|++|+.++..+++++|++
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~ 135 (338)
T PRK09422 78 GDRVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYTVDG-------------------GMAEQCIVTADYAVKVPEG 135 (338)
T ss_pred CCEEEEccCCCCCCCChhhcCCCcccCCCccc---cCccccC-------------------cceeEEEEchHHeEeCCCC
Confidence 99998755 46799999999999999976542 3444444 9999999999999999999
Q ss_pred CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496 175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARL-NRASKIIGVDINPEKFEIGKKFGITDFIN 253 (267)
Q Consensus 175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~-~g~~~vi~~~~~~~~~~~~~~~G~~~vi~ 253 (267)
+++++++.+.+.+.+||+++ ...+++++++|||+|+|++|++++++|+. +|+ +|+++++++++++.++++|++.+++
T Consensus 136 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 136 LDPAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTIN 213 (338)
T ss_pred CCHHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEec
Confidence 99999999999999999976 77889999999999999999999999998 599 8999999999999999999999999
Q ss_pred CCC
Q 024496 254 PAT 256 (267)
Q Consensus 254 ~~~ 256 (267)
+++
T Consensus 214 ~~~ 216 (338)
T PRK09422 214 SKR 216 (338)
T ss_pred ccc
Confidence 853
No 46
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=100.00 E-value=9.4e-32 Score=244.12 Aligned_cols=216 Identities=30% Similarity=0.456 Sum_probs=184.9
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCC-CCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST-DLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
||++++.++++.+++.++|.|.|+++||+||++++++|++|++.+.+.. .......|.++|||++|+|+++|++++.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~ 80 (341)
T PRK05396 1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK 80 (341)
T ss_pred CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence 6899999988879999999999999999999999999999998766532 111114678999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~ 174 (267)
+||+|+..+..+|+.|.+|+.+.+++|+.... .+...+| +|++|+.++.++++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~iP~~ 138 (341)
T PRK05396 81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVNRPG-------------------AFAEYLVIPAFNVWKIPDD 138 (341)
T ss_pred CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeecCCC-------------------cceeeEEechHHeEECcCC
Confidence 99999999999999999999999999977532 3333344 8999999999999999999
Q ss_pred CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496 175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP 254 (267)
Q Consensus 175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~ 254 (267)
+++++++.+ ..+.++++++.. ...+|++|+|.|+|.+|++++++|+.+|+.+|+++++++++.+.++++|+++++++
T Consensus 139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~ 215 (341)
T PRK05396 139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNV 215 (341)
T ss_pred CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecC
Confidence 999888755 466666665442 34689999999889999999999999999678888889999999999999999998
Q ss_pred CC
Q 024496 255 AT 256 (267)
Q Consensus 255 ~~ 256 (267)
++
T Consensus 216 ~~ 217 (341)
T PRK05396 216 AK 217 (341)
T ss_pred cc
Confidence 76
No 47
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=100.00 E-value=1.6e-31 Score=246.34 Aligned_cols=223 Identities=30% Similarity=0.436 Sum_probs=187.2
Q ss_pred ceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
||++++..++. ++++++|.|.+ +++||+||++++++|++|++.+.|.++ . .+|.++|||++|+|+++|+++.+|+
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~--~~p~~~g~e~~G~V~~vG~~v~~~~ 76 (375)
T cd08282 1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-A--EPGLVLGHEAMGEVEEVGSAVESLK 76 (375)
T ss_pred CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-C--CCCceeccccEEEEEEeCCCCCcCC
Confidence 68899988764 99999999996 799999999999999999999988765 2 4689999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKIT 172 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP 172 (267)
+||+|+..+..+|+.|.+|+.+.+++|.+...+. +....|..+. ....|+|++|+.++.. +++++|
T Consensus 77 ~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~--~~~~~~~~~~----------~~~~g~~a~y~~v~~~~~~~~~lP 144 (375)
T cd08282 77 VGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGR--AGGAYGYVDM----------GPYGGGQAEYLRVPYADFNLLKLP 144 (375)
T ss_pred CCCEEEEeCCCCCCCCHHHHCcCcccCCCCCccc--cccccccccc----------CCCCCeeeeEEEeecccCcEEECC
Confidence 9999999999999999999999999997643210 0000110000 0012589999999976 899999
Q ss_pred CCCChh---hhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 173 PHIPLG---IACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 173 ~~~~~~---~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
++++++ +++.+.+.+.++|+++ ....+.+|++|+|.|+|.+|++++++|+++|+.+|+++++++++.++++++|+
T Consensus 145 ~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~- 222 (375)
T cd08282 145 DRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA- 222 (375)
T ss_pred CCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-
Confidence 999998 4677777899999976 78889999999999889999999999999998678889999999999999998
Q ss_pred EEECCCC
Q 024496 250 DFINPAT 256 (267)
Q Consensus 250 ~vi~~~~ 256 (267)
..+++++
T Consensus 223 ~~v~~~~ 229 (375)
T cd08282 223 IPIDFSD 229 (375)
T ss_pred eEeccCc
Confidence 4677766
No 48
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=100.00 E-value=3.4e-31 Score=238.06 Aligned_cols=214 Identities=37% Similarity=0.551 Sum_probs=190.9
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
|||+++..+++++.++++|.|.+.++||+|++.++++|++|++...|..+.. ..|.++|||++|+|+++|++++.|++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~--~~~~~~g~e~~G~v~~~G~~v~~~~~ 78 (332)
T cd08259 1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRG--KYPLILGHEIVGTVEEVGEGVERFKP 78 (332)
T ss_pred CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCC--CCCeeccccceEEEEEECCCCccCCC
Confidence 6899998766668899999999999999999999999999999998876544 56889999999999999999999999
Q ss_pred CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496 96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI 175 (267)
Q Consensus 96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~ 175 (267)
||+|+......|+.|.+|+.+.+++|.+.. ..|.... |+|++|++++...++++|+++
T Consensus 79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~ 136 (332)
T cd08259 79 GDRVILYYYIPCGKCEYCLSGEENLCRNRA---EYGEEVD-------------------GGFAEYVKVPERSLVKLPDNV 136 (332)
T ss_pred CCEEEECCCCCCcCChhhhCCCcccCCCcc---ccccccC-------------------CeeeeEEEechhheEECCCCC
Confidence 999999998999999999999999998752 2343333 389999999999999999999
Q ss_pred ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP 254 (267)
Q Consensus 176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~ 254 (267)
++++++.+.+.+.+||+++.. ..+.++++++|+|+ |.+|++++++++.+|+ +|+++.+++++.+.++++|.+.+++.
T Consensus 137 ~~~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~ 214 (332)
T cd08259 137 SDESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDG 214 (332)
T ss_pred CHHHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEec
Confidence 999999999999999997665 88999999999987 9999999999999999 88888888889888888898888765
Q ss_pred C
Q 024496 255 A 255 (267)
Q Consensus 255 ~ 255 (267)
+
T Consensus 215 ~ 215 (332)
T cd08259 215 S 215 (332)
T ss_pred H
Confidence 4
No 49
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-31 Score=241.70 Aligned_cols=213 Identities=31% Similarity=0.398 Sum_probs=190.0
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
|||+++.+++++++++++|.|.+.++||+||+.++++|++|++...|..+.. ++|.++|||++|+|+++|+.++.+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~ 78 (334)
T PRK13771 1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRM--KYPVILGHEVVGTVEEVGENVKGFKP 78 (334)
T ss_pred CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCC--CCCeeccccceEEEEEeCCCCccCCC
Confidence 7899999999889999999999999999999999999999999888876543 56889999999999999999988999
Q ss_pred CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496 96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI 175 (267)
Q Consensus 96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~ 175 (267)
||+|++.+..+|+.|.+|..+.++.|..... +|...+| +|++|+.++.+.++++|+++
T Consensus 79 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~ 136 (334)
T PRK13771 79 GDRVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEELDG-------------------FFAEYAKVKVTSLVKVPPNV 136 (334)
T ss_pred CCEEEECCCCCCcCChhhcCCCcccCccccc---cccccCc-------------------eeeeeeecchhceEECCCCC
Confidence 9999998888999999999999999987543 3333344 89999999999999999999
Q ss_pred ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP 254 (267)
Q Consensus 176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~ 254 (267)
++.+++.+.+.+.++|+++... .+.++++|+|+|+ |.+|++++++|+.+|+ +++++++++++.+.++++ +++++++
T Consensus 137 ~~~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~ 213 (334)
T PRK13771 137 SDEGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVG 213 (334)
T ss_pred CHHHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCc
Confidence 9999999999999999976554 8999999999998 9999999999999999 889998889898888877 7666665
Q ss_pred C
Q 024496 255 A 255 (267)
Q Consensus 255 ~ 255 (267)
+
T Consensus 214 ~ 214 (334)
T PRK13771 214 S 214 (334)
T ss_pred h
Confidence 4
No 50
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=100.00 E-value=2.5e-31 Score=244.02 Aligned_cols=239 Identities=35% Similarity=0.512 Sum_probs=197.9
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc---
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE--- 92 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~--- 92 (267)
|||+++..++.++++++.|.|.++++||+||+.++++|++|+....+.++. .+|.++|||++|+|+.+|+++++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~---~~p~~~g~e~~G~v~~vG~~~~~~~~ 77 (367)
T cd08263 1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF---PPPFVLGHEISGEVVEVGPNVENPYG 77 (367)
T ss_pred CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC---CCCcccccccceEEEEeCCCCCCCCc
Confidence 789999988777899999999999999999999999999999988886643 46789999999999999999988
Q ss_pred cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCC-CCCCCccccccCCceeccc--ccccceeeeEEeeccceE
Q 024496 93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM-PRDGTSRFRELKGDVIHHF--LNISSFTEYSVVDITHVV 169 (267)
Q Consensus 93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~--~~~g~~a~y~~v~~~~~~ 169 (267)
|++||+|+..+..+|+.|.+|..+.+++|+....++..+. ..+|...+. ++...++ ...|+|++|+.++.++++
T Consensus 78 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (367)
T cd08263 78 LSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLF---RLDGGPVYMYSMGGLAEYAVVPATALA 154 (367)
T ss_pred CCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCccccc---ccCCCccccccCCcceeEEEechhhEE
Confidence 9999999998888999999999999999987542111111 111100000 0000000 113689999999999999
Q ss_pred EcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 170 KITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 170 ~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
++|+++++.+++.+++.+.+||+++.....+.++++|||+|+|.+|++++++|+.+|+..++++++++++.+.++++|++
T Consensus 155 ~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~ 234 (367)
T cd08263 155 PLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGAT 234 (367)
T ss_pred ECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCc
Confidence 99999999999999999999999887777889999999998899999999999999995599998899999999999999
Q ss_pred EEECCCCCCcccc
Q 024496 250 DFINPATCGDKTV 262 (267)
Q Consensus 250 ~vi~~~~~~~~~~ 262 (267)
.++++++ +++.
T Consensus 235 ~v~~~~~--~~~~ 245 (367)
T cd08263 235 HTVNAAK--EDAV 245 (367)
T ss_pred eEecCCc--ccHH
Confidence 9999877 5543
No 51
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=100.00 E-value=5e-31 Score=244.88 Aligned_cols=223 Identities=22% Similarity=0.193 Sum_probs=188.7
Q ss_pred ccccceeEEeec--CCCC---eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC--------CCCCCC-cccce
Q 024496 12 KVIRCKAAICRI--PGKP---LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL--------PKLPLP-VIFGH 77 (267)
Q Consensus 12 ~~~~~~a~~~~~--~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~--------~~~~~p-~~~G~ 77 (267)
.|.+|||+++.. +++| +++.++|.|.++++||+||+.++++|++|.+...+.... .....| .++||
T Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~ 83 (398)
T TIGR01751 4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS 83 (398)
T ss_pred cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence 467899999965 4543 888999999999999999999999999998876554210 000123 37999
Q ss_pred eeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccce
Q 024496 78 EAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSF 157 (267)
Q Consensus 78 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~ 157 (267)
|++|+|+++|+.++.|++||+|++.+...|+.|++|+.+.+++|..... .|.. .+.|+|
T Consensus 84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~------------------~~~g~~ 142 (398)
T TIGR01751 84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYE------------------TNFGSF 142 (398)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---cccc------------------CCCccc
Confidence 9999999999999999999999999999999999999999999965432 1211 112599
Q ss_pred eeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHH--HhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 024496 158 TEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWK--VAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD 234 (267)
Q Consensus 158 a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~--~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~ 234 (267)
++|++++..+++++|+++++++++.+.+.+.+||+++.. ..++.++++|+|+|+ |.+|++++++|+++|+ ++++++
T Consensus 143 ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~ 221 (398)
T TIGR01751 143 AEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVV 221 (398)
T ss_pred eEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEc
Confidence 999999999999999999999999999999999997654 467899999999997 9999999999999999 778888
Q ss_pred CChhhHHHHHHcCCCEEECCCC
Q 024496 235 INPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 235 ~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
+++++.+.++++|++.++|+++
T Consensus 222 ~~~~~~~~~~~~g~~~~v~~~~ 243 (398)
T TIGR01751 222 SSPEKAEYCRELGAEAVIDRND 243 (398)
T ss_pred CCHHHHHHHHHcCCCEEecCCC
Confidence 8899999999999999999865
No 52
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.98 E-value=5.4e-31 Score=238.60 Aligned_cols=212 Identities=33% Similarity=0.558 Sum_probs=187.8
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
|||++++.++. +++.+++.|.++++||+|||.++++|+.|+....+..+.. .+|.++|+|++|+|+++|+++++|++
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~--~~~~~~g~e~~G~V~~~G~~v~~~~~ 77 (337)
T cd08261 1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFA--SYPRILGHELSGEVVEVGEGVAGLKV 77 (337)
T ss_pred CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcC--CCCcccccccEEEEEEeCCCCCCCCC
Confidence 68999988865 8899999999999999999999999999999988876554 56789999999999999999999999
Q ss_pred CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496 96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI 175 (267)
Q Consensus 96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~ 175 (267)
||+|+..+..+|+.|..|+.+.+|+|..... .++... |+|++|+.++.+ ++++|+++
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~-~~~~p~~~ 134 (337)
T cd08261 78 GDRVVVDPYISCGECYACRKGRPNCCENLQV---LGVHRD-------------------GGFAEYIVVPAD-ALLVPEGL 134 (337)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCe---eeecCC-------------------CcceeEEEechh-eEECCCCC
Confidence 9999998888999999999999999954432 222222 389999999999 99999999
Q ss_pred ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA 255 (267)
Q Consensus 176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~ 255 (267)
++++++++ ..+.++++++ ...++.++++|||+|+|.+|.+++++|+.+|+ +|+++.+++++.+.++++|++++++++
T Consensus 135 ~~~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~ 211 (337)
T cd08261 135 SLDQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVG 211 (337)
T ss_pred CHHHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCc
Confidence 99999877 4778888865 77889999999999889999999999999999 899998889999999999999999988
Q ss_pred C
Q 024496 256 T 256 (267)
Q Consensus 256 ~ 256 (267)
+
T Consensus 212 ~ 212 (337)
T cd08261 212 D 212 (337)
T ss_pred c
Confidence 7
No 53
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.98 E-value=1.1e-30 Score=235.50 Aligned_cols=215 Identities=30% Similarity=0.460 Sum_probs=192.0
Q ss_pred ceeEEeecCCC----CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496 16 CKAAICRIPGK----PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE 91 (267)
Q Consensus 16 ~~a~~~~~~~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 91 (267)
||++++.+++. ++++++.+.|.++++||+||+.++++|++|++...|..+.. ..|.++|||++|+|+++|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~--~~~~~~g~e~~G~V~~vG~~v~ 78 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPP--KLPLIPGHEIVGRVEAVGPGVT 78 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCC--CCCccccccccEEEEEECCCCC
Confidence 78999998884 58888888888899999999999999999999988876543 5688999999999999999999
Q ss_pred ccCCCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496 92 EVKERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK 170 (267)
Q Consensus 92 ~~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~ 170 (267)
+|++||+|++.+. ..|+.|.+|..+.+++|....+ .|+..+| +|++|++++.+.+++
T Consensus 79 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~ 136 (329)
T cd08298 79 RFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYTVDG-------------------GYAEYMVADERFAYP 136 (329)
T ss_pred CCcCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccccCC-------------------ceEEEEEecchhEEE
Confidence 9999999987654 6799999999999999987654 3443344 899999999999999
Q ss_pred cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496 171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD 250 (267)
Q Consensus 171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~ 250 (267)
+|+++++.+++.+.+.+.+||+++ ..++++++++|+|+|+|++|++++++++..|+ +|+++++++++++.++++|++.
T Consensus 137 lp~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~ 214 (329)
T cd08298 137 IPEDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADW 214 (329)
T ss_pred CCCCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcE
Confidence 999999999999999999999976 88999999999999999999999999999998 8999999999999999999998
Q ss_pred EECCCC
Q 024496 251 FINPAT 256 (267)
Q Consensus 251 vi~~~~ 256 (267)
+++.++
T Consensus 215 ~~~~~~ 220 (329)
T cd08298 215 AGDSDD 220 (329)
T ss_pred EeccCc
Confidence 888764
No 54
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.98 E-value=6.7e-31 Score=238.56 Aligned_cols=214 Identities=31% Similarity=0.430 Sum_probs=184.5
Q ss_pred ceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
||++++..++. ++++++|.|.| +++||+||+.++++|++|+..+.|.++. ..|.++|||++|+|+++|+++..++
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~---~~~~~~g~e~~G~V~~vG~~v~~~~ 76 (345)
T cd08287 1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT---RAPAPIGHEFVGVVEEVGSEVTSVK 76 (345)
T ss_pred CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC---CCCcccccceEEEEEEeCCCCCccC
Confidence 78999998776 99999999996 8999999999999999999988877642 4578999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKIT 172 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP 172 (267)
+||+|+.....+|+.|.+|..++.++|..... .+...+| +|++|++++.. .++++|
T Consensus 77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP 134 (345)
T cd08287 77 PGDFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAFVDG-------------------GQGEYVRVPLADGTLVKVP 134 (345)
T ss_pred CCCEEEeccccCCCCChhhhCcCcccCCCCCc---ccCCCCC-------------------ceEEEEEcchhhCceEECC
Confidence 99999886678899999999999999986432 3333444 99999999975 999999
Q ss_pred CCCChhhhh-----hcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496 173 PHIPLGIAC-----LLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247 (267)
Q Consensus 173 ~~~~~~~aa-----~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G 247 (267)
+++++..+. .+.+.+.+||+++ ...++.++++|+|.|+|.+|++++++|+.+|+..++++++++++.++++++|
T Consensus 135 ~~l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g 213 (345)
T cd08287 135 GSPSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFG 213 (345)
T ss_pred CCCChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC
Confidence 999872221 2235688899975 5788999999999988999999999999999967999999998999999999
Q ss_pred CCEEECCCC
Q 024496 248 ITDFINPAT 256 (267)
Q Consensus 248 ~~~vi~~~~ 256 (267)
+++++++++
T Consensus 214 a~~v~~~~~ 222 (345)
T cd08287 214 ATDIVAERG 222 (345)
T ss_pred CceEecCCc
Confidence 999999977
No 55
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.98 E-value=7.7e-31 Score=236.13 Aligned_cols=210 Identities=28% Similarity=0.399 Sum_probs=181.1
Q ss_pred ceeEEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPG-KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
||++++..++ +.+++++.+.|.++++||+||+.++++|++|+..+.+. ... .+|.++|||++|+|+++|+++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~~--~~~~~~g~e~~G~v~~vG~~v~~~~ 77 (325)
T cd08264 1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KVK--PMPHIPGAEFAGVVEEVGDHVKGVK 77 (325)
T ss_pred CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CCC--CCCeecccceeEEEEEECCCCCCCC
Confidence 6899987766 34888888888889999999999999999999887642 222 4577899999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~ 174 (267)
+||+|+..+...|+.|.+|+.|.+++|.+... .|...+| +|++|++++.+.++++|++
T Consensus 78 ~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~ 135 (325)
T cd08264 78 KGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVVSNG-------------------GYAEYIVVPEKNLFKIPDS 135 (325)
T ss_pred CCCEEEECCCcCCCCChhhcCCCccccCccce---eeccCCC-------------------ceeeEEEcCHHHceeCCCC
Confidence 99999999989999999999999999987542 3333333 8999999999999999999
Q ss_pred CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496 175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253 (267)
Q Consensus 175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~ 253 (267)
+++++++.+.+.+.++|+++. ..+++++++|+|+|+ |++|++++++|+.+|+ +|+++.+ .+.++++|++++++
T Consensus 136 ~~~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~~----~~~~~~~g~~~~~~ 209 (325)
T cd08264 136 ISDELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSR----KDWLKEFGADEVVD 209 (325)
T ss_pred CCHHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeH----HHHHHHhCCCeeec
Confidence 999999999999999999765 488999999999997 9999999999999999 7877752 36667899988888
Q ss_pred CCC
Q 024496 254 PAT 256 (267)
Q Consensus 254 ~~~ 256 (267)
+++
T Consensus 210 ~~~ 212 (325)
T cd08264 210 YDE 212 (325)
T ss_pred chH
Confidence 754
No 56
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.98 E-value=1.1e-30 Score=239.49 Aligned_cols=219 Identities=24% Similarity=0.379 Sum_probs=182.7
Q ss_pred ccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCC-CCCCCcccceeeEEEEEEecCCC
Q 024496 12 KVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP-KLPLPVIFGHEAVGVVESVGEYV 90 (267)
Q Consensus 12 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~~~p~~~G~e~~G~V~~vG~~v 90 (267)
....++++++..+.. +++++++.|.++++||+||++++++|++|++.+.+..... ....|.++|||++|+|+++|+++
T Consensus 14 ~~~~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v 92 (364)
T PLN02702 14 VEEENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEV 92 (364)
T ss_pred cccccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCC
Confidence 344455666666655 8888999888999999999999999999999887632111 11357899999999999999999
Q ss_pred cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeeccceE
Q 024496 91 EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVV 169 (267)
Q Consensus 91 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~ 169 (267)
++|++||+|+..+..+|+.|+.|+.|.+++|++... ++.. .+ |+|++|++++...++
T Consensus 93 ~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~-------------------g~~~~y~~v~~~~~~ 150 (364)
T PLN02702 93 KHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVH-------------------GSLANQVVHPADLCF 150 (364)
T ss_pred CCCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCC-------------------CcccceEEcchHHeE
Confidence 999999999999999999999999999999986432 1111 12 489999999999999
Q ss_pred EcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 170 KITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 170 ~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
++|+++++.++++.. ++.++|+++ ...++.++++|+|+|+|++|++++++|+.+|+..++++++++++.++++++|++
T Consensus 151 ~~P~~l~~~~aa~~~-~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~ 228 (364)
T PLN02702 151 KLPENVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGAD 228 (364)
T ss_pred ECCCCCCHHHHhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC
Confidence 999999999887632 455577765 778899999999999899999999999999997788999999999999999999
Q ss_pred EEECCC
Q 024496 250 DFINPA 255 (267)
Q Consensus 250 ~vi~~~ 255 (267)
++++++
T Consensus 229 ~~~~~~ 234 (364)
T PLN02702 229 EIVLVS 234 (364)
T ss_pred EEEecC
Confidence 988754
No 57
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.98 E-value=1e-30 Score=237.17 Aligned_cols=221 Identities=29% Similarity=0.382 Sum_probs=190.9
Q ss_pred eeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCC
Q 024496 17 KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKER 96 (267)
Q Consensus 17 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 96 (267)
|+++.+..+..+++++++.|.++++||+||+.++++|++|++.+.+..... .+|.++|||++|+|+++|+++++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~--~~p~~~g~e~~G~V~~vG~~v~~~~~G 78 (337)
T cd05283 1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPT--KYPLVPGHEIVGIVVAVGSKVTKFKVG 78 (337)
T ss_pred CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCC--CCCcccCcceeeEEEEECCCCcccCCC
Confidence 578888888889999999999999999999999999999999998876443 578999999999999999999999999
Q ss_pred CEEEe-eccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496 97 DLVLP-IFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI 175 (267)
Q Consensus 97 d~V~~-~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~ 175 (267)
|+|++ .....|++|++|+.+.+++|+.....+ .|....+ ....|+|++|+.++.+.++++|+++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~g~~~~~~~v~~~~~~~lp~~~ 143 (337)
T cd05283 79 DRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NGKYPDG--------------TITQGGYADHIVVDERFVFKIPEGL 143 (337)
T ss_pred CEEEEecCCCCCCCCccccCCchhcCcchhhcc-cccccCC--------------CcCCCcceeEEEechhheEECCCCC
Confidence 99974 445689999999999999997754321 1111111 1112589999999999999999999
Q ss_pred ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA 255 (267)
Q Consensus 176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~ 255 (267)
++++++.+.+.+.+||+++ ...++.++++++|.|+|.+|++++++++.+|+ +|+++++++++.+.++++|++++++.+
T Consensus 144 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~ 221 (337)
T cd05283 144 DSAAAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATK 221 (337)
T ss_pred CHHHhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCc
Confidence 9999999999999999965 55679999999998889999999999999999 899999999999999999999999876
Q ss_pred C
Q 024496 256 T 256 (267)
Q Consensus 256 ~ 256 (267)
+
T Consensus 222 ~ 222 (337)
T cd05283 222 D 222 (337)
T ss_pred c
Confidence 5
No 58
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.98 E-value=8.1e-31 Score=244.52 Aligned_cols=208 Identities=24% Similarity=0.317 Sum_probs=169.1
Q ss_pred ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhH-hcCCC-C---CCCCCCcccceeeEEEEEEecC
Q 024496 14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFW-KSSTD-L---PKLPLPVIFGHEAVGVVESVGE 88 (267)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~-~---~~~~~p~~~G~e~~G~V~~vG~ 88 (267)
|+||++++..++. ++++++|.|.|+++||+|||.++|||++|++.+ .|... . ....+|.++|||++|+|+++|+
T Consensus 1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~ 79 (410)
T cd08238 1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK 79 (410)
T ss_pred CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence 6799999999886 999999999999999999999999999999976 45321 1 0014688999999999999999
Q ss_pred CCc-ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc-
Q 024496 89 YVE-EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT- 166 (267)
Q Consensus 89 ~v~-~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~- 166 (267)
+++ +|++||||++.+...|+.|.+|.. .|...+| +|+||++++.+
T Consensus 80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~~--------------~g~~~~G-------------------~~aey~~v~~~~ 126 (410)
T cd08238 80 KWQGKYKPGQRFVIQPALILPDGPSCPG--------------YSYTYPG-------------------GLATYHIIPNEV 126 (410)
T ss_pred CccCCCCCCCEEEEcCCcCCCCCCCCCC--------------ccccCCC-------------------cceEEEEecHHh
Confidence 998 699999999988888998887720 2222344 99999999987
Q ss_pred ---ceEEcCCCCChhhhhhcc---hhhhhHHHHH--------HHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcC--CCe
Q 024496 167 ---HVVKITPHIPLGIACLLS---CGVSTGVGAA--------WKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNR--ASK 229 (267)
Q Consensus 167 ---~~~~iP~~~~~~~aa~l~---~~~~ta~~a~--------~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g--~~~ 229 (267)
+++++|+++++++++++. +. .+++.++ .+..++++|++|+|+|+ |++|++++|+|+.+| +.+
T Consensus 127 ~~~~~~~lP~~l~~~~aal~epl~~~-~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~ 205 (410)
T cd08238 127 MEQDCLLIYEGDGYAEASLVEPLSCV-IGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSL 205 (410)
T ss_pred ccCCeEECCCCCCHHHHhhcchHHHH-HHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCce
Confidence 689999999999988652 22 2234332 24578899999999985 999999999999975 458
Q ss_pred EEEEcCChhhHHHHHHc--------CCC-EEECCCC
Q 024496 230 IIGVDINPEKFEIGKKF--------GIT-DFINPAT 256 (267)
Q Consensus 230 vi~~~~~~~~~~~~~~~--------G~~-~vi~~~~ 256 (267)
|++++++++|++.++++ |++ .++|+++
T Consensus 206 Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~ 241 (410)
T cd08238 206 LVVTDVNDERLARAQRLFPPEAASRGIELLYVNPAT 241 (410)
T ss_pred EEEEcCCHHHHHHHHHhccccccccCceEEEECCCc
Confidence 99999999999999997 776 5788754
No 59
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.98 E-value=8.5e-31 Score=242.24 Aligned_cols=217 Identities=28% Similarity=0.460 Sum_probs=183.1
Q ss_pred ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCC------CCCCCCCCcccceeeEEEEEEec
Q 024496 14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST------DLPKLPLPVIFGHEAVGVVESVG 87 (267)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~~~~~~p~~~G~e~~G~V~~vG 87 (267)
.++.+.++.. . +++++++|.|.++++||+||+.++++|++|++.+.+.. +.. ..+|.++|||++|+|+++|
T Consensus 27 ~~~~~~~~~~-~-~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~-~~~~~~~g~e~~G~V~~vG 103 (384)
T cd08265 27 TNLGSKVWRY-P-ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGL-TEFPVVIGHEFSGVVEKTG 103 (384)
T ss_pred ccceeEEEeC-C-CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcc-cCCCcccccceEEEEEEEC
Confidence 3455555553 3 49999999999999999999999999999998876421 111 1568899999999999999
Q ss_pred CCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc
Q 024496 88 EYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH 167 (267)
Q Consensus 88 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~ 167 (267)
+++++|++||+|++.+..+|+.|+.|..+.+++|..... .|+..+| +|++|+.++.+.
T Consensus 104 ~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~v~v~~~~ 161 (384)
T cd08265 104 KNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFSADG-------------------AFAEYIAVNARY 161 (384)
T ss_pred CCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeecCCC-------------------cceeeEEechHH
Confidence 999999999999999999999999999999999976442 3333344 899999999999
Q ss_pred eEEcCCC-------CChhhhhhcchhhhhHHHHHHHH-hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496 168 VVKITPH-------IPLGIACLLSCGVSTGVGAAWKV-AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK 239 (267)
Q Consensus 168 ~~~iP~~-------~~~~~aa~l~~~~~ta~~a~~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~ 239 (267)
++++|++ ++++ ++.+..++++||+++... .++++|++|+|+|+|.+|++++++|+.+|+.+|+++++++++
T Consensus 162 ~~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~ 240 (384)
T cd08265 162 AWEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEER 240 (384)
T ss_pred eEECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence 9999986 3455 445556889999987666 689999999999889999999999999999789999999999
Q ss_pred HHHHHHcCCCEEECCCC
Q 024496 240 FEIGKKFGITDFINPAT 256 (267)
Q Consensus 240 ~~~~~~~G~~~vi~~~~ 256 (267)
.++++++|+++++++++
T Consensus 241 ~~~~~~~g~~~~v~~~~ 257 (384)
T cd08265 241 RNLAKEMGADYVFNPTK 257 (384)
T ss_pred HHHHHHcCCCEEEcccc
Confidence 99999999999999875
No 60
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.98 E-value=1.1e-30 Score=236.95 Aligned_cols=217 Identities=29% Similarity=0.408 Sum_probs=186.1
Q ss_pred ceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
|||+++..++. +++++++.|.| +++||+||+.++++|+.|+....|.++. ..|.++|||++|+|+++|+++++++
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~---~~~~~~g~e~~G~V~~vG~~v~~~~ 76 (344)
T cd08284 1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPS---TPGFVLGHEFVGEVVEVGPEVRTLK 76 (344)
T ss_pred CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCC---CCCcccccceEEEEEeeCCCccccC
Confidence 68999987754 99999999998 4999999999999999999988876652 4578899999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKIT 172 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP 172 (267)
+||+|+..+.+.|+.|.+|+.+.++.|++... .|.... ....|+|++|+.++.+ .++++|
T Consensus 77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------~~~~g~~~~~~~v~~~~~~~~~~p 138 (344)
T cd08284 77 VGDRVVSPFTIACGECFYCRRGQSGRCAKGGL---FGYAGS---------------PNLDGAQAEYVRVPFADGTLLKLP 138 (344)
T ss_pred CCCEEEEcccCCCCCChHHhCcCcccCCCCcc---cccccc---------------CCCCCceeEEEEcccccCceEECC
Confidence 99999998889999999999999999976532 111000 0112489999999865 999999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
+++++++++.+.+.+.+||+++. ...+.++++|+|+|+|.+|++++++|+.+|+.+|+++++.+++.+.++++|+. ++
T Consensus 139 ~~l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~ 216 (344)
T cd08284 139 DGLSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PI 216 (344)
T ss_pred CCCCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EE
Confidence 99999999999999999999764 58899999999998899999999999999976899998889999999999975 56
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
+++.
T Consensus 217 ~~~~ 220 (344)
T cd08284 217 NFED 220 (344)
T ss_pred ecCC
Confidence 6655
No 61
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.98 E-value=1.7e-30 Score=235.61 Aligned_cols=219 Identities=30% Similarity=0.453 Sum_probs=191.2
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
||++++.+++. +.+++.+.|.+.+++|+||+.++++|+.|+....+.+... ..|.++|+|++|+|+++|++++.|++
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~--~~~~~~g~~~~G~V~~~G~~v~~~~~ 77 (343)
T cd08235 1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDL--KPPRILGHEIAGEIVEVGDGVTGFKV 77 (343)
T ss_pred CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccC--CCCcccccceEEEEEeeCCCCCCCCC
Confidence 68999988875 8999999998999999999999999999999988876422 45789999999999999999999999
Q ss_pred CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc-----eEE
Q 024496 96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH-----VVK 170 (267)
Q Consensus 96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~-----~~~ 170 (267)
||+|+..+...|+.|+.|.+++.++|..... .|...+ |+|++|++++.++ +++
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~~~~~~~~~~ 135 (343)
T cd08235 78 GDRVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNLYD-------------------GGFAEYVRVPAWAVKRGGVLK 135 (343)
T ss_pred CCEEEEccCCCCCCChHHHCcCcccCCCcce---eccCCC-------------------CcceeeEEecccccccccEEE
Confidence 9999999999999999999999999977543 233333 3999999999998 999
Q ss_pred cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496 171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD 250 (267)
Q Consensus 171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~ 250 (267)
+|+++++.+++.+ +.+.+||+++. ..++.++++|+|+|+|.+|++++++|+.+|++.|+++.+++++.+.++++|.++
T Consensus 136 lP~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~ 213 (343)
T cd08235 136 LPDNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADY 213 (343)
T ss_pred CCCCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcE
Confidence 9999999999876 68889999764 558999999999988999999999999999944899998999999999999999
Q ss_pred EECCCCCCccccc
Q 024496 251 FINPATCGDKTVS 263 (267)
Q Consensus 251 vi~~~~~~~~~~~ 263 (267)
++++++ +++.+
T Consensus 214 ~~~~~~--~~~~~ 224 (343)
T cd08235 214 TIDAAE--EDLVE 224 (343)
T ss_pred EecCCc--cCHHH
Confidence 999887 55433
No 62
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.97 E-value=3e-30 Score=232.79 Aligned_cols=214 Identities=31% Similarity=0.466 Sum_probs=190.0
Q ss_pred eeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCC
Q 024496 17 KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKER 96 (267)
Q Consensus 17 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 96 (267)
|++++.+++..+++++.|.|.+.+++|+|++.++++|++|+..+.+..... .+|.++|||++|+|+++|+++++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~--~~p~~~g~e~~G~v~~~g~~~~~~~~G 78 (330)
T cd08245 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGS--KYPLVPGHEIVGEVVEVGAGVEGRKVG 78 (330)
T ss_pred CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCC--CCCcccCccceEEEEEECCCCcccccC
Confidence 688998886669999999999999999999999999999999998876433 568899999999999999999999999
Q ss_pred CEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496 97 DLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI 175 (267)
Q Consensus 97 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~ 175 (267)
|+|++.+. ..|++|++|.++.+++|++... .++..+| +|++|+.++.++++++|+++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~ 136 (330)
T cd08245 79 DRVGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYTTQG-------------------GYAEYMVADAEYTVLLPDGL 136 (330)
T ss_pred CEEEEccccCCCCCChhhhCcCcccCcCccc---cCcccCC-------------------ccccEEEEcHHHeEECCCCC
Confidence 99987554 6799999999999999998543 3332333 89999999999999999999
Q ss_pred ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA 255 (267)
Q Consensus 176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~ 255 (267)
++.+++.+.+.+.+||+++. ..++.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++.+++..
T Consensus 137 ~~~~~~~l~~~~~ta~~~l~-~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~ 214 (330)
T cd08245 137 PLAQAAPLLCAGITVYSALR-DAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSG 214 (330)
T ss_pred CHHHhhhhhhhHHHHHHHHH-hhCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccC
Confidence 99999999989999999764 4789999999999988899999999999999 899999999999999999999998876
Q ss_pred C
Q 024496 256 T 256 (267)
Q Consensus 256 ~ 256 (267)
+
T Consensus 215 ~ 215 (330)
T cd08245 215 A 215 (330)
T ss_pred C
Confidence 5
No 63
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.97 E-value=3.1e-30 Score=232.65 Aligned_cols=217 Identities=32% Similarity=0.491 Sum_probs=193.9
Q ss_pred ceeEEeecCCCC-eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPGKP-LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~~~-~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
||++++..++++ +.+.+.+.|.+.+++|+|++.++++|+.|.....+..+... ++|.++|+|++|+|+.+|+++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~-~~~~~~g~~~~G~v~~~G~~v~~~~ 79 (338)
T cd08254 1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLT-KLPLTLGHEIAGTVVEVGAGVTNFK 79 (338)
T ss_pred CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccC-CCCEeccccccEEEEEECCCCccCC
Confidence 799999999987 67788888889999999999999999999999988765221 5678999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~ 174 (267)
+||+|+..+..+|+.|.+|..+..+.|..... .|...+ |+|++|+.++.+.++++|++
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~ 137 (338)
T cd08254 80 VGDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLGID-------------------GGFAEYIVVPARALVPVPDG 137 (338)
T ss_pred CCCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccccC-------------------CcceeeEEechHHeEECCCC
Confidence 99999999999999999999999999965432 233333 38999999999999999999
Q ss_pred CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496 175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP 254 (267)
Q Consensus 175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~ 254 (267)
+++.+++.+...+.+||+++.....+.++++|||.|+|.+|++++++|+.+|+ +|+++++++++.+.++++|.+++++.
T Consensus 138 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~ 216 (338)
T cd08254 138 VPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNS 216 (338)
T ss_pred CCHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcC
Confidence 99999999999999999987777789999999999889999999999999999 79999999999999999999999987
Q ss_pred CC
Q 024496 255 AT 256 (267)
Q Consensus 255 ~~ 256 (267)
++
T Consensus 217 ~~ 218 (338)
T cd08254 217 LD 218 (338)
T ss_pred CC
Confidence 76
No 64
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.97 E-value=3.3e-30 Score=231.58 Aligned_cols=217 Identities=27% Similarity=0.405 Sum_probs=189.3
Q ss_pred ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
|||+++...+.+ +++.+.+.|.+.+++|+|++.++++|++|+..+.|..... ...|.++|||++|+|+++|++++.|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~~ 79 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIK-LPLPHILGSDGAGVVEAVGPGVTNV 79 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCC-CCCCeecccceEEEEEEeCCCCCCC
Confidence 689998844432 7777888888899999999999999999999888765422 1467899999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|++.+...|+.|.+|..+.+++|..... .|....| ++++|+.++.+.++++|+
T Consensus 80 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~~~~~~~~~~~~p~ 137 (342)
T cd08266 80 KPGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEHVDG-------------------GYAEYVAVPARNLLPIPD 137 (342)
T ss_pred CCCCEEEEccccccccchhhccccccccccccc---cccccCc-------------------ceeEEEEechHHceeCCC
Confidence 999999999999999999999999999986432 3333333 899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++.+++.+++.+.++|+++.+...+.++++++|+|+ +.+|++++++++.+|+ +|+++++++++.+.+.++|.+.++
T Consensus 138 ~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~ 216 (342)
T cd08266 138 NLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVI 216 (342)
T ss_pred CCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEE
Confidence 99999999999899999998778889999999999988 7999999999999999 799999999999998888888888
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
+..+
T Consensus 217 ~~~~ 220 (342)
T cd08266 217 DYRK 220 (342)
T ss_pred ecCC
Confidence 7655
No 65
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.97 E-value=5.8e-30 Score=230.04 Aligned_cols=207 Identities=22% Similarity=0.396 Sum_probs=181.0
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
|||+++.+++. +++++++.|.++++||+||+.++++|++|.....|.++ .|.++|||++|+|+++|++ +++
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~-----~~~~~G~e~~G~Vv~~G~~---~~~ 71 (319)
T cd08242 1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP-----FPGVPGHEFVGIVEEGPEA---ELV 71 (319)
T ss_pred CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC-----CCCccCceEEEEEEEeCCC---CCC
Confidence 68999988764 99999999999999999999999999999999887653 5688999999999999988 789
Q ss_pred CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCC-CCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496 96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM-PRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174 (267)
Q Consensus 96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~ 174 (267)
||+|...+..+|+.|.+|..+..+.|+.... .++ ..+| +|++|++++.++++++|++
T Consensus 72 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~ 129 (319)
T cd08242 72 GKRVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG-------------------AFAEYLTLPLENLHVVPDL 129 (319)
T ss_pred CCeEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC-------------------ceEEEEEechHHeEECcCC
Confidence 9999999988999999999999999877543 333 1233 8999999999999999999
Q ss_pred CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496 175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP 254 (267)
Q Consensus 175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~ 254 (267)
++.++++.+ ..+.+++. +.+..+++++++|+|+|+|.+|++++|+|+.+|+ +|+++++++++.+.++++|++.++++
T Consensus 130 ~~~~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~ 206 (319)
T cd08242 130 VPDEQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPD 206 (319)
T ss_pred CCHHHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCc
Confidence 999888764 35556666 5577889999999999989999999999999999 69999999999999999999988887
Q ss_pred CC
Q 024496 255 AT 256 (267)
Q Consensus 255 ~~ 256 (267)
++
T Consensus 207 ~~ 208 (319)
T cd08242 207 EA 208 (319)
T ss_pred cc
Confidence 55
No 66
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.97 E-value=4.8e-30 Score=233.20 Aligned_cols=215 Identities=31% Similarity=0.490 Sum_probs=183.6
Q ss_pred eEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcC-CCCCCCCCCcccceeeEEEEEEecCCCcccCCC
Q 024496 18 AAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSS-TDLPKLPLPVIFGHEAVGVVESVGEYVEEVKER 96 (267)
Q Consensus 18 a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 96 (267)
++++.++.. +.+++.+.|.+.++||+||+.++++|+.|++.+.+. .......+|.++|+|++|+|+++|+++++|++|
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (343)
T cd05285 1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG 79 (343)
T ss_pred CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence 467788855 999999999999999999999999999999876422 111101357789999999999999999999999
Q ss_pred CEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCC
Q 024496 97 DLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIP 176 (267)
Q Consensus 97 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~ 176 (267)
|+|++.+..+|++|++|+.|.+++|++..+. .....+ |+|++|++++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------g~~~~~~~v~~~~~~~lP~~~~ 138 (343)
T cd05285 80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA--ATPPVD-------------------GTLCRYVNHPADFCHKLPDNVS 138 (343)
T ss_pred CEEEEccccCCCCChhHhCcCcccCcCcccc--ccccCC-------------------CceeeeEEecHHHcEECcCCCC
Confidence 9999989999999999999999999875331 011122 3899999999999999999999
Q ss_pred hhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496 177 LGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 177 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
+++++.+ .++++|++++ ....++++++|+|.|+|.+|++++++|+.+|++.|+++++++++.+.++++|+++++++++
T Consensus 139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~ 216 (343)
T cd05285 139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT 216 (343)
T ss_pred HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc
Confidence 9999877 4788999875 7889999999999988999999999999999955999998999999999999999999877
No 67
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.97 E-value=9.1e-30 Score=230.79 Aligned_cols=216 Identities=30% Similarity=0.473 Sum_probs=190.8
Q ss_pred ceeEEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPG-KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
|||+++..++ ..+++++++.|.+.++||+||+.++++|++|...+.+.++.+. ..|.++|||++|+|+++|++++.|+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~e~~G~V~~vG~~~~~~~ 79 (341)
T cd08297 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKP-KLPLIGGHEGAGVVVAVGPGVSGLK 79 (341)
T ss_pred CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCC-CCCccCCcccceEEEEeCCCCCCCC
Confidence 7899998877 3389999999999999999999999999999998888765331 4577899999999999999999999
Q ss_pred CCCEEEeec-cCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 95 ERDLVLPIF-HRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 95 ~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
+||+|+..+ ...|+.|.+|..+.+++|..... .|+...| ++++|+.++.+.++++|+
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~s~~~~~~~~~~~lp~ 137 (341)
T cd08297 80 VGDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYTVDG-------------------TFAEYAIADARYVTPIPD 137 (341)
T ss_pred CCCEEEEecCCCCCCCCccccCCCcccCCCccc---cccccCC-------------------cceeEEEeccccEEECCC
Confidence 999998876 57799999999999999977543 3433344 899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++.+++.+.+.+.+||+++.. .+++++++|||+|+ +.+|++++++|+.+|+ +|+++.+++++.+.++++|+++++
T Consensus 138 ~~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~ 215 (341)
T cd08297 138 GLSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFV 215 (341)
T ss_pred CCCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEE
Confidence 99999999999999999997654 58999999999987 6799999999999999 899999999999999999999999
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
++++
T Consensus 216 ~~~~ 219 (341)
T cd08297 216 DFKK 219 (341)
T ss_pred cCCC
Confidence 9877
No 68
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.97 E-value=9.3e-30 Score=230.71 Aligned_cols=205 Identities=23% Similarity=0.392 Sum_probs=177.0
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCC---------CCCCCCCcccceeeEEEEEEe
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTD---------LPKLPLPVIFGHEAVGVVESV 86 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---------~~~~~~p~~~G~e~~G~V~~v 86 (267)
|||+++..+ ++++++++.|+++++||+||+.++++|+.|++...|... .....+|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v 78 (341)
T cd08262 1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY 78 (341)
T ss_pred CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence 689999866 599999999999999999999999999999999887321 001135789999999999999
Q ss_pred cCCCcc-cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 024496 87 GEYVEE-VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI 165 (267)
Q Consensus 87 G~~v~~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~ 165 (267)
|+++++ |++||+|+..+...|+.|++|..+.. ...+ |+|++|++++.
T Consensus 79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~-------------~~~~-------------------g~~~~~~~v~~ 126 (341)
T cd08262 79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLS-------------PEAP-------------------GGYAEYMLLSE 126 (341)
T ss_pred CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCC-------------cCCC-------------------CceeeeEEech
Confidence 999987 99999999999999999999932210 0122 48999999999
Q ss_pred cceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 166 THVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 166 ~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
++++++|+++++++++ +.+++++||++ ....+++++++|||+|+|.+|.+++|+|+.+|++.++++++++++.+.+++
T Consensus 127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 204 (341)
T cd08262 127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA 204 (341)
T ss_pred HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 9999999999999887 55688899997 578899999999999889999999999999999778888889999999999
Q ss_pred cCCCEEECCCC
Q 024496 246 FGITDFINPAT 256 (267)
Q Consensus 246 ~G~~~vi~~~~ 256 (267)
+|+++++++++
T Consensus 205 ~g~~~~i~~~~ 215 (341)
T cd08262 205 MGADIVVDPAA 215 (341)
T ss_pred cCCcEEEcCCC
Confidence 99999999876
No 69
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.97 E-value=5.4e-30 Score=230.32 Aligned_cols=192 Identities=18% Similarity=0.258 Sum_probs=153.6
Q ss_pred cceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCC-hhhHHhHhcCCCCCC-CCCCcccceeeEEEEEEecCCCcc
Q 024496 15 RCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLC-HSDVTFWKSSTDLPK-LPLPVIFGHEAVGVVESVGEYVEE 92 (267)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~-~~D~~~~~g~~~~~~-~~~p~~~G~e~~G~V~~vG~~v~~ 92 (267)
+||++++..++. ++++++|.|.|+++||||||.+++|| ++|++.+.|.++... ..+|.++|||++|+|+++|+++ +
T Consensus 1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~ 78 (308)
T TIGR01202 1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G 78 (308)
T ss_pred CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence 588999998876 99999999999999999999999996 799998888764321 2579999999999999999998 6
Q ss_pred cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496 93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT 172 (267)
Q Consensus 93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP 172 (267)
|++||||++. |..|..|.. | .+ |+|+||+.+|.+.++++|
T Consensus 79 ~~vGdrV~~~----~~~c~~~~~---------------~--~~-------------------G~~aey~~v~~~~~~~ip 118 (308)
T TIGR01202 79 FRPGDRVFVP----GSNCYEDVR---------------G--LF-------------------GGASKRLVTPASRVCRLD 118 (308)
T ss_pred CCCCCEEEEe----Ccccccccc---------------c--cC-------------------CcccceEEcCHHHceeCC
Confidence 9999999873 223322210 0 12 389999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++++. +.+. ..++||+++.+ . ..++++|+|+|+|++|++++|+|+++|++.|++++.++++++.+.++ .++
T Consensus 119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i 191 (308)
T TIGR01202 119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVL 191 (308)
T ss_pred CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---ccc
Confidence 9998864 4444 57899997643 3 34688999999999999999999999997788888888887776543 445
Q ss_pred CCC
Q 024496 253 NPA 255 (267)
Q Consensus 253 ~~~ 255 (267)
|++
T Consensus 192 ~~~ 194 (308)
T TIGR01202 192 DPE 194 (308)
T ss_pred Chh
Confidence 543
No 70
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.97 E-value=6.4e-30 Score=230.66 Aligned_cols=195 Identities=23% Similarity=0.273 Sum_probs=165.9
Q ss_pred ceeEEeecCCCC-----eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCC
Q 024496 16 CKAAICRIPGKP-----LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYV 90 (267)
Q Consensus 16 ~~a~~~~~~~~~-----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v 90 (267)
||++++..++.| +++.++|.|.|+++||+||+.++++|++|++.+.|.++... .+|.++|||++|+|+++|+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~-~~p~v~G~e~~G~V~~vG~~v 79 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTK-ALPVPPGFEGSGTVVAAGGGP 79 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCC-CCCcCCCcceEEEEEEECCCc
Confidence 789999988853 78889999999999999999999999999999988765322 578999999999999999999
Q ss_pred cc-cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceE
Q 024496 91 EE-VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVV 169 (267)
Q Consensus 91 ~~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~ 169 (267)
++ |++||+|+.... .+ |+|++|+++|.++++
T Consensus 80 ~~~~~vGd~V~~~~~-----------------------------~~-------------------g~~a~~~~v~~~~~~ 111 (324)
T cd08291 80 LAQSLIGKRVAFLAG-----------------------------SY-------------------GTYAEYAVADAQQCL 111 (324)
T ss_pred cccCCCCCEEEecCC-----------------------------CC-------------------CcchheeeecHHHeE
Confidence 96 999999976321 02 389999999999999
Q ss_pred EcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEE--cCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496 170 KITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIF--GLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247 (267)
Q Consensus 170 ~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~--G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G 247 (267)
++|+++++++++.+.+...+||. +...... ++++++|+ |+|++|++++|+|+++|+ +|+++++++++++.++++|
T Consensus 112 ~iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g 188 (324)
T cd08291 112 PLPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIG 188 (324)
T ss_pred ECCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcC
Confidence 99999999999988878889976 4555555 56666665 459999999999999999 8999999999999999999
Q ss_pred CCEEECCCCCCcccccc
Q 024496 248 ITDFINPATCGDKTVSQ 264 (267)
Q Consensus 248 ~~~vi~~~~~~~~~~~~ 264 (267)
+++++++++ +++.++
T Consensus 189 ~~~~i~~~~--~~~~~~ 203 (324)
T cd08291 189 AEYVLNSSD--PDFLED 203 (324)
T ss_pred CcEEEECCC--ccHHHH
Confidence 999999887 655443
No 71
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.97 E-value=2.2e-29 Score=227.30 Aligned_cols=213 Identities=33% Similarity=0.548 Sum_probs=190.0
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
|||+++.+++. +++.+.+.|.+.++||+||+.++++|+.|+....|.++. .+|.++|+|++|+|+++|+++++|++
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~---~~p~~~g~~~~G~v~~vG~~v~~~~~ 76 (334)
T cd08234 1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA---APPLVPGHEFAGVVVAVGSKVTGFKV 76 (334)
T ss_pred CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC---CCCcccccceEEEEEEeCCCCCCCCC
Confidence 78999998875 999999999999999999999999999999998887653 36789999999999999999999999
Q ss_pred CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496 96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI 175 (267)
Q Consensus 96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~ 175 (267)
||+|+..+...|+.|.+|..+.+++|+.... .|...+| +|++|++++.++++++|+++
T Consensus 77 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~ 134 (334)
T cd08234 77 GDRVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVTRNG-------------------GFAEYVVVPAKQVYKIPDNL 134 (334)
T ss_pred CCEEEEcCCcCCCCCccccCcChhhCCCcce---eccCCCC-------------------cceeEEEecHHHcEECcCCC
Confidence 9999998888999999999999999977642 3333344 89999999999999999999
Q ss_pred ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA 255 (267)
Q Consensus 176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~ 255 (267)
++.+++.+ +.+.++++++ ...++.++++|+|+|+|.+|.+++++|+.+|++.|+++++++++.+.++++|++++++++
T Consensus 135 ~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~ 212 (334)
T cd08234 135 SFEEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPS 212 (334)
T ss_pred CHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCC
Confidence 99998776 6788898876 788999999999998899999999999999995589999999999999999999899887
Q ss_pred C
Q 024496 256 T 256 (267)
Q Consensus 256 ~ 256 (267)
+
T Consensus 213 ~ 213 (334)
T cd08234 213 R 213 (334)
T ss_pred C
Confidence 6
No 72
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.97 E-value=1.7e-29 Score=228.88 Aligned_cols=216 Identities=26% Similarity=0.454 Sum_probs=179.4
Q ss_pred EeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHh-cCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCE
Q 024496 20 ICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK-SSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDL 98 (267)
Q Consensus 20 ~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~ 98 (267)
++++.+. +++++.+.|.++++||+||+.++++|++|+.... +........+|.++|+|++|+|+++|+++++|++||+
T Consensus 2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~ 80 (339)
T cd08232 2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR 80 (339)
T ss_pred eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence 4556655 9999999999999999999999999999988763 4332111145778999999999999999999999999
Q ss_pred EEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCCh
Q 024496 99 VLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPL 177 (267)
Q Consensus 99 V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~ 177 (267)
|+..+...|++|.+|..|..+.|....+ ++.. .+. +..|+|++|++++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~---------------~~~g~~~~~v~v~~~~~~~iP~~~~~ 142 (339)
T cd08232 81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRFP---------------HVQGGFREYLVVDASQCVPLPDGLSL 142 (339)
T ss_pred EEEccCCcCCCChHHhCcCcccCccccc---eeeccccC---------------CCCCceeeEEEechHHeEECcCCCCH
Confidence 9999999999999999999999987532 1110 000 01249999999999999999999999
Q ss_pred hhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496 178 GIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 178 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
++|+. ..++.++|+++...... ++++|||.|+|.+|++++++|+.+|+.+++++++++++.++++++|+++++++++
T Consensus 143 ~~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~ 219 (339)
T cd08232 143 RRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR 219 (339)
T ss_pred HHhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc
Confidence 99876 46888999876554445 9999999988999999999999999977999999999999989999999998865
No 73
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.97 E-value=1.6e-29 Score=229.29 Aligned_cols=213 Identities=30% Similarity=0.528 Sum_probs=188.8
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE 95 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~ 95 (267)
|||+++++.+. +.+++.+.|.++++||+||+.++++|+.|+....+.+.. ..|.++|+|++|+|+.+|++++.|++
T Consensus 1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~---~~~~~~g~~~~G~V~~~g~~v~~~~~ 76 (343)
T cd08236 1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY---HPPLVLGHEFSGTVEEVGSGVDDLAV 76 (343)
T ss_pred CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCC---CCCcccCcceEEEEEEECCCCCcCCC
Confidence 78999998876 899999999999999999999999999999988776522 45788999999999999999999999
Q ss_pred CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496 96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI 175 (267)
Q Consensus 96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~ 175 (267)
||+|+..+...|+.|++|..+.+..|+.... +|...+ |+|++|+.++.++++++|+++
T Consensus 77 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lP~~~ 134 (343)
T cd08236 77 GDRVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSRRD-------------------GAFAEYVSVPARNLIKIPDHV 134 (343)
T ss_pred CCEEEEcCCCCCCCChhHHCcChhhCCCcce---EecccC-------------------CcccceEEechHHeEECcCCC
Confidence 9999999888999999999999999977532 333333 399999999999999999999
Q ss_pred ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA 255 (267)
Q Consensus 176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~ 255 (267)
++++++.+ ..+.++|+++. ...+.++++|+|+|+|.+|++++++|+.+|+..|+++++++++.+.++++|++++++++
T Consensus 135 ~~~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~ 212 (343)
T cd08236 135 DYEEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPK 212 (343)
T ss_pred CHHHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCc
Confidence 99999887 57889999764 78899999999998899999999999999995599999899999999999999999987
Q ss_pred C
Q 024496 256 T 256 (267)
Q Consensus 256 ~ 256 (267)
+
T Consensus 213 ~ 213 (343)
T cd08236 213 E 213 (343)
T ss_pred c
Confidence 6
No 74
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.97 E-value=1.6e-29 Score=229.70 Aligned_cols=216 Identities=33% Similarity=0.488 Sum_probs=182.7
Q ss_pred ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCC-CCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST-DLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
||++++..++..+.+.+.+.|.|.++||+||+.++++|+.|+..+.+.. .......|.++|||++|+|+++|++++.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 80 (341)
T cd05281 1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK 80 (341)
T ss_pred CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence 6899999888669999999999999999999999999999998765432 111114567899999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~ 174 (267)
+||+|+..+.++|+.|.+|..+.+++|..... .|.... |+|++|++++.++++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~~~~~lP~~ 138 (341)
T cd05281 81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKI---LGVDTD-------------------GCFAEYVVVPEENLWKNDKD 138 (341)
T ss_pred CCCEEEECCccCCCCChHHHCcCcccCcccce---EeccCC-------------------CcceEEEEechHHcEECcCC
Confidence 99999999999999999999999999975422 333333 48999999999999999999
Q ss_pred CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496 175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP 254 (267)
Q Consensus 175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~ 254 (267)
++++.+ .+...+.++++++. ...+++++|+|.|+|.+|++++++|+.+|+.+|++++++++|.++++++|+++++++
T Consensus 139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~ 215 (341)
T cd05281 139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINP 215 (341)
T ss_pred CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCc
Confidence 998555 45557788887654 456789999999889999999999999998678888888999999999999999987
Q ss_pred CC
Q 024496 255 AT 256 (267)
Q Consensus 255 ~~ 256 (267)
+.
T Consensus 216 ~~ 217 (341)
T cd05281 216 RE 217 (341)
T ss_pred cc
Confidence 66
No 75
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.97 E-value=2e-29 Score=226.21 Aligned_cols=217 Identities=28% Similarity=0.468 Sum_probs=184.4
Q ss_pred ceeEEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPG-KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
||++++++++ .++++++++.|.+.++||+||+.++++|++|.+...+.+... ..|.++|+|++|+|+++|++++.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~--~~p~~~G~e~~G~V~~vG~~v~~~~ 78 (306)
T cd08258 1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPV--ETPVVLGHEFSGTIVEVGPDVEGWK 78 (306)
T ss_pred CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcC--CCCeeeccceEEEEEEECCCcCcCC
Confidence 5788888655 348999999999999999999999999999999888876333 4578999999999999999999999
Q ss_pred CCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 95 ERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 95 ~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
+||+|+..+. .+|+.|++|..+..+.|+... +.|...+ |+|++|++++..+++++|+
T Consensus 79 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~~~~~~v~~~~~~~lp~ 136 (306)
T cd08258 79 VGDRVVSETTFSTCGRCPYCRRGDYNLCPHRK---GIGTQAD-------------------GGFAEYVLVPEESLHELPE 136 (306)
T ss_pred CCCEEEEccCcCCCCCCcchhCcCcccCCCCc---eeeecCC-------------------CceEEEEEcchHHeEECcC
Confidence 9999998775 679999999999999997642 1233333 3999999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE--cCChhhHHHHHHcCCCEE
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGV--DINPEKFEIGKKFGITDF 251 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~--~~~~~~~~~~~~~G~~~v 251 (267)
++++++++ +...+.++|+++.....++++++|||.|+|.+|++++++|+.+|+ +|+++ +++.++.++++++|++++
T Consensus 137 ~~~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~ 214 (306)
T cd08258 137 NLSLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV 214 (306)
T ss_pred CCCHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc
Confidence 99999887 555788999988888899999999998889999999999999999 77776 345567888889999888
Q ss_pred ECCCCCCccc
Q 024496 252 INPATCGDKT 261 (267)
Q Consensus 252 i~~~~~~~~~ 261 (267)
+++. +++
T Consensus 215 -~~~~--~~~ 221 (306)
T cd08258 215 -NGGE--EDL 221 (306)
T ss_pred -CCCc--CCH
Confidence 7766 544
No 76
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.97 E-value=8.8e-30 Score=225.86 Aligned_cols=167 Identities=22% Similarity=0.397 Sum_probs=143.2
Q ss_pred ccceeeEEEEEEecCCCc------ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCce
Q 024496 74 IFGHEAVGVVESVGEYVE------EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDV 147 (267)
Q Consensus 74 ~~G~e~~G~V~~vG~~v~------~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~ 147 (267)
++|||++|+|+++|++|+ +|++||||++.+..+|+.|++|+.|+++.|++... .|....+
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~----------- 66 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALD----------- 66 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCccccc-----------
Confidence 589999999999999999 89999999999999999999999999999987543 2221100
Q ss_pred ecccccccceeeeEEeecc-ceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcC
Q 024496 148 IHHFLNISSFTEYSVVDIT-HVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNR 226 (267)
Q Consensus 148 ~~~~~~~g~~a~y~~v~~~-~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g 226 (267)
..+...|+|+||+++|.+ +++++|+++++++++.+.+.+.|+|+++ +.....++++|||+|+|++|++++|+|+++|
T Consensus 67 -~~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G 144 (280)
T TIGR03366 67 -SGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG 144 (280)
T ss_pred -CCccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 000012499999999997 7999999999999999998999999965 5566679999999999999999999999999
Q ss_pred CCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496 227 ASKIIGVDINPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 227 ~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
+++|++++++++|+++++++|+++++++++
T Consensus 145 ~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~ 174 (280)
T TIGR03366 145 AARVVAADPSPDRRELALSFGATALAEPEV 174 (280)
T ss_pred CCEEEEECCCHHHHHHHHHcCCcEecCchh
Confidence 966999999999999999999999998754
No 77
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.97 E-value=1.6e-29 Score=217.95 Aligned_cols=201 Identities=25% Similarity=0.333 Sum_probs=175.9
Q ss_pred CCCcCccccceeEEeecCCCC---eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEE
Q 024496 7 SPKAGKVIRCKAAICRIPGKP---LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVV 83 (267)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V 83 (267)
.+++-++...|++++..+++| +++++++.|.+..++|+||.+++.|||+|+..++|.++..+ ++|.+-|+|++|.|
T Consensus 11 ssa~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP-~~PAVgGnEGv~eV 89 (354)
T KOG0025|consen 11 SSASQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRP-ELPAVGGNEGVGEV 89 (354)
T ss_pred ccccccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCC-CCCcccCCcceEEE
Confidence 334457788999999999999 67888999988788899999999999999999999999775 88999999999999
Q ss_pred EEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEe
Q 024496 84 ESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVV 163 (267)
Q Consensus 84 ~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v 163 (267)
+.+|+++++|++||.|+.... +.|+|++|.+.
T Consensus 90 v~vGs~vkgfk~Gd~VIp~~a------------------------------------------------~lGtW~t~~v~ 121 (354)
T KOG0025|consen 90 VAVGSNVKGFKPGDWVIPLSA------------------------------------------------NLGTWRTEAVF 121 (354)
T ss_pred EEecCCcCccCCCCeEeecCC------------------------------------------------CCccceeeEee
Confidence 999999999999999987543 12599999999
Q ss_pred eccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 164 DITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 164 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
+++.++++++.+++++||.+.+.-+|||+.+.+..++++||+|+-.|+ +.+|++.+|+|++.|++ .|-+.|+....+.
T Consensus 122 ~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gik-tinvVRdR~~iee 200 (354)
T KOG0025|consen 122 SESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIK-TINVVRDRPNIEE 200 (354)
T ss_pred cccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcc-eEEEeecCccHHH
Confidence 999999999999999999999999999998888889999999999998 99999999999999994 4445456544444
Q ss_pred ----HHHcCCCEEECCCCC
Q 024496 243 ----GKKFGITDFINPATC 257 (267)
Q Consensus 243 ----~~~~G~~~vi~~~~~ 257 (267)
++.+||++||...++
T Consensus 201 l~~~Lk~lGA~~ViTeeel 219 (354)
T KOG0025|consen 201 LKKQLKSLGATEVITEEEL 219 (354)
T ss_pred HHHHHHHcCCceEecHHHh
Confidence 456999999976653
No 78
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.97 E-value=4.3e-29 Score=224.11 Aligned_cols=193 Identities=24% Similarity=0.242 Sum_probs=169.1
Q ss_pred ceeEEeecCCCC---eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496 16 CKAAICRIPGKP---LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE 92 (267)
Q Consensus 16 ~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 92 (267)
|||+++.+++.+ ++++++|.|.+.++||+|||.++++|+.|+..+.|.++... .+|.++|||++|+|+++|+++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~-~~p~~~G~e~~G~V~~~G~~v~~ 79 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKP-ELPAIGGSEAVGVVDAVGEGVKG 79 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCC-CCCCCCCcceEEEEEEeCCCCCC
Confidence 689999887754 77899999999999999999999999999999988765321 56889999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496 93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT 172 (267)
Q Consensus 93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP 172 (267)
|++||+|+..+. . |+|++|+.++...++++|
T Consensus 80 ~~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~ip 110 (324)
T cd08292 80 LQVGQRVAVAPV------------------------------H-------------------GTWAEYFVAPADGLVPLP 110 (324)
T ss_pred CCCCCEEEeccC------------------------------C-------------------CcceeEEEEchHHeEECC
Confidence 999999976421 1 389999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
+++++++++.+.+.+.++|+++ ....+.+|++|||+|+ |.+|++++++|+.+|+ +++++..+.++.+.++++|++++
T Consensus 111 ~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~ 188 (324)
T cd08292 111 DGISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPV 188 (324)
T ss_pred CCCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEE
Confidence 9999999999888889999865 5688999999999987 9999999999999999 88888888888888888999999
Q ss_pred ECCCCCCcccc
Q 024496 252 INPATCGDKTV 262 (267)
Q Consensus 252 i~~~~~~~~~~ 262 (267)
+++++ +++.
T Consensus 189 ~~~~~--~~~~ 197 (324)
T cd08292 189 VSTEQ--PGWQ 197 (324)
T ss_pred EcCCC--chHH
Confidence 99876 5443
No 79
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.96 E-value=1.3e-28 Score=223.54 Aligned_cols=183 Identities=19% Similarity=0.170 Sum_probs=150.6
Q ss_pred eEEEEeecCCCC-CCeEEEEEeeeeCChhhHHhHhcCCC-CCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccC
Q 024496 28 LVIEEIEVEPPK-AWEIRIKILCTSLCHSDVTFWKSSTD-LPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHR 105 (267)
Q Consensus 28 ~~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~ 105 (267)
++++++|.|.|. ++||||||.++|||+.|......... .....+|.++|||++|+|+++|+++++|++||+|+...
T Consensus 23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-- 100 (345)
T cd08293 23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN-- 100 (345)
T ss_pred eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence 788999999874 99999999999999998643321111 00014678999999999999999999999999996420
Q ss_pred CCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhh----hh
Q 024496 106 DCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGI----AC 181 (267)
Q Consensus 106 ~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~----aa 181 (267)
++|+||++++.++++++|+++++.+ ++
T Consensus 101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a 131 (345)
T cd08293 101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG 131 (345)
T ss_pred -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence 2799999999999999999864332 44
Q ss_pred hcchhhhhHHHHHHHHhCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCCEEECCCCC
Q 024496 182 LLSCGVSTGVGAAWKVAGVEVG--STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGITDFINPATC 257 (267)
Q Consensus 182 ~l~~~~~ta~~a~~~~~~~~~g--~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~~vi~~~~~ 257 (267)
.+.+++.+||+++.+..+++++ ++|||+|+ |++|++++|+|+++|+.+|+++++++++.+.+++ +|+++++++++
T Consensus 132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~- 210 (345)
T cd08293 132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT- 210 (345)
T ss_pred hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC-
Confidence 5667899999987777788877 99999987 9999999999999998679999999999999876 99999999987
Q ss_pred Cccccc
Q 024496 258 GDKTVS 263 (267)
Q Consensus 258 ~~~~~~ 263 (267)
+++.+
T Consensus 211 -~~~~~ 215 (345)
T cd08293 211 -DNVAE 215 (345)
T ss_pred -CCHHH
Confidence 55544
No 80
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.96 E-value=1.3e-28 Score=223.48 Aligned_cols=210 Identities=30% Similarity=0.472 Sum_probs=179.3
Q ss_pred ecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCC-CCCCCCCcccceeeEEEEEEecCCCcccCCCCEEE
Q 024496 22 RIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTD-LPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVL 100 (267)
Q Consensus 22 ~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~ 100 (267)
++++.+++++++|.|.|.++||+||+.++++|+.|+..+.+... ....++|.++|+|++|+|+++|+++++|++||+|+
T Consensus 5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 84 (340)
T TIGR00692 5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS 84 (340)
T ss_pred ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence 56888899999999999999999999999999999988765421 11114577899999999999999999999999999
Q ss_pred eeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhh
Q 024496 101 PIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIA 180 (267)
Q Consensus 101 ~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~a 180 (267)
..+...|+.|..|..+..++|++..+ .|+...| +|++|++++.+.++++|++++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~~~~a 142 (340)
T TIGR00692 85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------------CFAEYAVVPAQNIWKNPKSIPPEYA 142 (340)
T ss_pred ECCcCCCCCChhhhCcChhhCcCcce---EeecCCC-------------------cceeEEEeehHHcEECcCCCChHhh
Confidence 99999999999999999999988643 2332333 8999999999999999999998665
Q ss_pred hhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496 181 CLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 181 a~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
+ +...+.++++++ .....++++|+|.|+|.+|++++++|+.+|++.|+++++++++.++++++|++.++++.+
T Consensus 143 ~-~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~ 215 (340)
T TIGR00692 143 T-IQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK 215 (340)
T ss_pred h-hcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc
Confidence 4 556888888865 345789999999888999999999999999955888988899999999999999998876
No 81
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.96 E-value=2.7e-28 Score=220.41 Aligned_cols=191 Identities=24% Similarity=0.255 Sum_probs=165.8
Q ss_pred eeEEeecC---CCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496 17 KAAICRIP---GKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE 91 (267)
Q Consensus 17 ~a~~~~~~---~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 91 (267)
||+++..+ +.+ ++++++|.|.|+++||+||++++++|+.|...+.+..+.. .+|.++|+|++|+|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~--~~~~~~g~e~~G~V~~vG~~v~ 78 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEA--GQPKILGWDAAGVVVAVGDEVT 78 (336)
T ss_pred CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCC--CCCcccceeeEEEEEEeCCCCC
Confidence 56777765 443 7788899999999999999999999999999888765443 5688999999999999999999
Q ss_pred ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496 92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI 171 (267)
Q Consensus 92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i 171 (267)
+|++||+|+.... ...+ |+|++|++++.+.++++
T Consensus 79 ~~~~Gd~V~~~~~---------------------------~~~~-------------------g~~~~~~~v~~~~~~~i 112 (336)
T TIGR02817 79 LFKPGDEVWYAGD---------------------------IDRP-------------------GSNAEFHLVDERIVGHK 112 (336)
T ss_pred CCCCCCEEEEcCC---------------------------CCCC-------------------CcccceEEEcHHHcccC
Confidence 9999999975310 0112 38999999999999999
Q ss_pred CCCCChhhhhhcchhhhhHHHHHHHHhCCCC-----CCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHH
Q 024496 172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEV-----GSTVAIFGL-GAVGLAVAEGARLN-RASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~-----g~~VlI~G~-g~vG~~a~~la~~~-g~~~vi~~~~~~~~~~~~~ 244 (267)
|+++++++++.+++.+.+||+++....++.+ +++|||+|+ |.+|++++|+|+.+ |+ +|+++.+++++.+.++
T Consensus 113 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~ 191 (336)
T TIGR02817 113 PKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVL 191 (336)
T ss_pred CCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHH
Confidence 9999999999999999999998777788877 999999986 99999999999998 99 8999998999999999
Q ss_pred HcCCCEEECCCC
Q 024496 245 KFGITDFINPAT 256 (267)
Q Consensus 245 ~~G~~~vi~~~~ 256 (267)
++|+++++++++
T Consensus 192 ~~g~~~~~~~~~ 203 (336)
T TIGR02817 192 ELGAHHVIDHSK 203 (336)
T ss_pred HcCCCEEEECCC
Confidence 999999998643
No 82
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.96 E-value=7.8e-28 Score=218.52 Aligned_cols=208 Identities=25% Similarity=0.273 Sum_probs=170.5
Q ss_pred ceeEEeecCCCC--eEEEE-eecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC------------------CCCCCCcc
Q 024496 16 CKAAICRIPGKP--LVIEE-IEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL------------------PKLPLPVI 74 (267)
Q Consensus 16 ~~a~~~~~~~~~--~~~~~-~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~------------------~~~~~p~~ 74 (267)
||++++..++.+ +.+.+ .+.|.+.+++|+|||.++++|++|++.+.|.++. ...++|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 688888876653 44443 4667788999999999999999999988775431 01256889
Q ss_pred cceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccc
Q 024496 75 FGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNI 154 (267)
Q Consensus 75 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~ 154 (267)
+|||++|+|+++|+++++|++||+|+..+...|+.|..|. .|.. .|...+
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~-----~~~~------~~~~~~------------------- 130 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPA-----DIDY------IGSERD------------------- 130 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccc-----cccc------cCCCCC-------------------
Confidence 9999999999999999999999999998888888876642 1211 121122
Q ss_pred cceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE
Q 024496 155 SSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGV 233 (267)
Q Consensus 155 g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~ 233 (267)
|+|++|+.++...++++|+++++.+++.+.+.+.++|+++ ....+.++++|||+|+ |.+|++++++|+.+|+ +++++
T Consensus 131 g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~ 208 (350)
T cd08274 131 GGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV 208 (350)
T ss_pred ccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence 3899999999999999999999999999999999999965 7788999999999998 9999999999999999 68888
Q ss_pred cCChhhHHHHHHcCCCEEECCCC
Q 024496 234 DINPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 234 ~~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
+++. +++.++++|++.+++.++
T Consensus 209 ~~~~-~~~~~~~~g~~~~~~~~~ 230 (350)
T cd08274 209 AGAA-KEEAVRALGADTVILRDA 230 (350)
T ss_pred eCch-hhHHHHhcCCeEEEeCCC
Confidence 7655 888889999987666544
No 83
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.96 E-value=8.4e-28 Score=217.75 Aligned_cols=191 Identities=27% Similarity=0.326 Sum_probs=167.3
Q ss_pred ceeEEeecCCCC---eEEEEeecCCCCC-CeEEEEEeeeeCChhhHHhHhcCCCCCCCC----CCcccceeeEEEEEEec
Q 024496 16 CKAAICRIPGKP---LVIEEIEVEPPKA-WEIRIKILCTSLCHSDVTFWKSSTDLPKLP----LPVIFGHEAVGVVESVG 87 (267)
Q Consensus 16 ~~a~~~~~~~~~---~~~~~~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~----~p~~~G~e~~G~V~~vG 87 (267)
|||+++.+++.+ +.++++|.|.|.+ +||+||+.++++|+.|+..+.|..+... . .|.++|||++|+|+++|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~-~~~~~~~~~~g~e~~G~V~~vG 79 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKP-PTTPEPPAVGGNEGVGEVVKVG 79 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCC-cccCCCCCCCCcceEEEEEEeC
Confidence 789999988876 7899999998887 9999999999999999999888764321 2 57799999999999999
Q ss_pred CCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc
Q 024496 88 EYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH 167 (267)
Q Consensus 88 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~ 167 (267)
+++..|++||+|+.... .. |+|++|+.++.+.
T Consensus 80 ~~v~~~~~Gd~V~~~~~-----------------------------~~-------------------g~~~~~~~v~~~~ 111 (341)
T cd08290 80 SGVKSLKPGDWVIPLRP-----------------------------GL-------------------GTWRTHAVVPADD 111 (341)
T ss_pred CCCCCCCCCCEEEecCC-----------------------------CC-------------------ccchheEeccHHH
Confidence 99999999999976321 01 4899999999999
Q ss_pred eEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh----hhHHH
Q 024496 168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP----EKFEI 242 (267)
Q Consensus 168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~----~~~~~ 242 (267)
++++|+++++++++.+++.+.++|+++.....+.++++|||+|+ |.+|++++++|+.+|+ +++++.++. ++.+.
T Consensus 112 ~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~ 190 (341)
T cd08290 112 LIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKER 190 (341)
T ss_pred eEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHH
Confidence 99999999999999999999999998777778999999999987 9999999999999999 777776655 67888
Q ss_pred HHHcCCCEEECCCC
Q 024496 243 GKKFGITDFINPAT 256 (267)
Q Consensus 243 ~~~~G~~~vi~~~~ 256 (267)
++++|+++++++++
T Consensus 191 ~~~~g~~~~~~~~~ 204 (341)
T cd08290 191 LKALGADHVLTEEE 204 (341)
T ss_pred HHhcCCCEEEeCcc
Confidence 88899999998876
No 84
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.96 E-value=1.3e-27 Score=215.08 Aligned_cols=187 Identities=23% Similarity=0.246 Sum_probs=157.2
Q ss_pred cceeEEeecC--CCC----eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496 15 RCKAAICRIP--GKP----LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE 88 (267)
Q Consensus 15 ~~~a~~~~~~--~~~----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~ 88 (267)
+||++++.++ +.+ +++++++.|.|+++||||||.+++||+.|..... ... ..|.++|+|++|+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~---~~~--~~p~v~G~e~~G~V~~--- 73 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSK---RLN--EGDTMIGTQVAKVIES--- 73 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhcccc---cCC--CCCcEecceEEEEEec---
Confidence 6899999883 333 7889999999999999999999999988754221 111 4688999999999995
Q ss_pred CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--
Q 024496 89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT-- 166 (267)
Q Consensus 89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~-- 166 (267)
.++.|++||+|+.. ++|++|++++.+
T Consensus 74 ~~~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~ 101 (329)
T cd08294 74 KNSKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQ 101 (329)
T ss_pred CCCCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccc
Confidence 44679999999642 168999999999
Q ss_pred -ceEEcCCCCC--h---hhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496 167 -HVVKITPHIP--L---GIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK 239 (267)
Q Consensus 167 -~~~~iP~~~~--~---~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~ 239 (267)
.++++|++++ + ..++.+++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++
T Consensus 102 ~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~ 180 (329)
T cd08294 102 PDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDK 180 (329)
T ss_pred cceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHH
Confidence 9999999987 2 2234577899999998878889999999999986 9999999999999999 89999999999
Q ss_pred HHHHHHcCCCEEECCCCCCcccccc
Q 024496 240 FEIGKKFGITDFINPATCGDKTVSQ 264 (267)
Q Consensus 240 ~~~~~~~G~~~vi~~~~~~~~~~~~ 264 (267)
.+.++++|+++++++++ +++.++
T Consensus 181 ~~~l~~~Ga~~vi~~~~--~~~~~~ 203 (329)
T cd08294 181 VAWLKELGFDAVFNYKT--VSLEEA 203 (329)
T ss_pred HHHHHHcCCCEEEeCCC--ccHHHH
Confidence 99999999999999987 665443
No 85
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.96 E-value=1e-27 Score=217.69 Aligned_cols=189 Identities=25% Similarity=0.270 Sum_probs=158.9
Q ss_pred ccceeEEeecCCC-CeEEEEeec----CCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceee--EEEEEEe
Q 024496 14 IRCKAAICRIPGK-PLVIEEIEV----EPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEA--VGVVESV 86 (267)
Q Consensus 14 ~~~~a~~~~~~~~-~~~~~~~~~----p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~--~G~V~~v 86 (267)
-.+|+++...+.. .|++++.+. |+|+++||||||++++||+.|+..+.|...... ..|+++|++. .|++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~-~~p~~~g~~~~g~~~~~~v 84 (338)
T cd08295 6 VILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLY-LPPFKPGEVITGYGVAKVV 84 (338)
T ss_pred EEEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCcccc-CCCcCCCCeEeccEEEEEE
Confidence 3567777544443 288988877 789999999999999999999998887543211 4578889754 4566668
Q ss_pred cCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec-
Q 024496 87 GEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI- 165 (267)
Q Consensus 87 G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~- 165 (267)
|+.++.|++||+|+.. |+|+||+++|.
T Consensus 85 ~~~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~ 112 (338)
T cd08295 85 DSGNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRG 112 (338)
T ss_pred ecCCCCCCCCCEEEec----------------------------------------------------CCceeEEEecch
Confidence 8888899999999531 27999999999
Q ss_pred cceEEcC-CCCChh-hhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 166 THVVKIT-PHIPLG-IACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 166 ~~~~~iP-~~~~~~-~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
..++++| +++++. +++.+.+++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.++
T Consensus 113 ~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~ 191 (338)
T cd08295 113 QDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDL 191 (338)
T ss_pred hceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 7999995 678886 788899999999998877889999999999997 9999999999999999 89999999999999
Q ss_pred HHH-cCCCEEECCCC
Q 024496 243 GKK-FGITDFINPAT 256 (267)
Q Consensus 243 ~~~-~G~~~vi~~~~ 256 (267)
+++ +|+++++++++
T Consensus 192 ~~~~lGa~~vi~~~~ 206 (338)
T cd08295 192 LKNKLGFDDAFNYKE 206 (338)
T ss_pred HHHhcCCceeEEcCC
Confidence 998 99999999764
No 86
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.96 E-value=3.3e-27 Score=212.68 Aligned_cols=191 Identities=23% Similarity=0.182 Sum_probs=169.8
Q ss_pred cceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496 15 RCKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE 92 (267)
Q Consensus 15 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 92 (267)
+||++++.+++.+ +++++++.|.++++||+||+.++++|++|+....+.++.. .+|.++|||++|+|+.+|+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~--~~~~~~g~e~~G~v~~vG~~v~~ 78 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPP--SLPSGLGTEAAGVVSKVGSGVKH 78 (327)
T ss_pred CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCC--CCCCccCcceEEEEEEeCCCCCC
Confidence 5899999887775 8889999999999999999999999999999888876543 46788999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496 93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT 172 (267)
Q Consensus 93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP 172 (267)
+++||+|+.... .. |+|++|+.++.+.++++|
T Consensus 79 ~~~Gd~V~~~~~-----------------------------~~-------------------g~~~~~v~v~~~~~~~lp 110 (327)
T PRK10754 79 IKVGDRVVYAQS-----------------------------AL-------------------GAYSSVHNVPADKAAILP 110 (327)
T ss_pred CCCCCEEEECCC-----------------------------CC-------------------cceeeEEEcCHHHceeCC
Confidence 999999964210 01 389999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
+++++++++.+.+.+.++|.++.....+.+|++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++++
T Consensus 111 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~ 189 (327)
T PRK10754 111 DAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQV 189 (327)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEE
Confidence 999999999888899999997777788999999999975 9999999999999999 88999999999999999999999
Q ss_pred ECCCC
Q 024496 252 INPAT 256 (267)
Q Consensus 252 i~~~~ 256 (267)
++.++
T Consensus 190 ~~~~~ 194 (327)
T PRK10754 190 INYRE 194 (327)
T ss_pred EcCCC
Confidence 98876
No 87
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.96 E-value=2.3e-27 Score=206.48 Aligned_cols=187 Identities=32% Similarity=0.497 Sum_probs=164.4
Q ss_pred eEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCC
Q 024496 42 EIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTC 121 (267)
Q Consensus 42 eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c 121 (267)
||+|++.++++|+.|+..+.+..+.. ..+|.++|||++|+|+++|+.++.|++||+|+..+...|+.|++|+. .|
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~ 75 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPP-PKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LC 75 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcC-CCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hC
Confidence 68999999999999999998876511 15688999999999999999999999999999999999999999997 66
Q ss_pred CCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCC
Q 024496 122 SKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVE 201 (267)
Q Consensus 122 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~ 201 (267)
+.... .+.... |+|++|+.++.+.++++|+++++++++.+++++.+||+++.....+.
T Consensus 76 ~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~ 133 (271)
T cd05188 76 PGGGI---LGEGLD-------------------GGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLK 133 (271)
T ss_pred CCCCE---eccccC-------------------CcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCC
Confidence 55543 222233 48999999999999999999999999999899999999876666679
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
++++|||+|+|.+|++++++++.+|. +|+++++++++.+.++++|+++++++.+
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~ 187 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE 187 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCc
Confidence 99999999986699999999999997 9999999999999999999999998776
No 88
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.95 E-value=1.7e-26 Score=207.67 Aligned_cols=211 Identities=26% Similarity=0.295 Sum_probs=177.4
Q ss_pred ceeEEeecCC--CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 16 CKAAICRIPG--KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 16 ~~a~~~~~~~--~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
|||++++..+ +++++++.+.|.++++||+|++.++++|++|+....|.++... ..|.++|||++|+|+++|+.+++|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~e~~G~v~~~G~~~~~~ 79 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPV-KDPLIPLSDGAGEVVAVGEGVTRF 79 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCC-CCCcccccceeEEEEEeCCCCcCC
Confidence 7899998664 3378888888888999999999999999999999887765332 467899999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|+......|+.+ ..++|.... +.|...+ |+|++|+.++.+.++++|+
T Consensus 80 ~~Gd~V~~~~~~~~~~~------~~~~~~~~~---~~~~~~~-------------------g~~~~~~~~~~~~~~~lp~ 131 (336)
T cd08276 80 KVGDRVVPTFFPNWLDG------PPTAEDEAS---ALGGPID-------------------GVLAEYVVLPEEGLVRAPD 131 (336)
T ss_pred CCCCEEEEecccccccc------ccccccccc---ccccccC-------------------ceeeeEEEecHHHeEECCC
Confidence 99999998776555443 334443211 1232223 3899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~ 253 (267)
++++.+++.+.+.+.+||+++.....+++|++|+|+|+|++|++++++++++|+ +|+++++++++.+.+.++|++++++
T Consensus 132 ~~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~ 210 (336)
T cd08276 132 HLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVIN 210 (336)
T ss_pred CCCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEc
Confidence 999999999999999999987777889999999999889999999999999999 7999999999999999999999998
Q ss_pred CCC
Q 024496 254 PAT 256 (267)
Q Consensus 254 ~~~ 256 (267)
.+.
T Consensus 211 ~~~ 213 (336)
T cd08276 211 YRT 213 (336)
T ss_pred CCc
Confidence 754
No 89
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.95 E-value=1.1e-26 Score=208.47 Aligned_cols=194 Identities=20% Similarity=0.212 Sum_probs=165.3
Q ss_pred ceeEEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 16 CKAAICRIPGK--PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 16 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
|||+++..+++ +++++++|.|.++++||+||+.++++|++|+..+.|..+... ..|.++|||++|+|+++ +++.|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~e~~G~v~~~--~~~~~ 77 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTR-NYPHTPGIDAAGTVVSS--DDPRF 77 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCC-CCCCccCcccEEEEEEe--CCCCC
Confidence 78999998886 599999999999999999999999999999999888764321 46789999999999999 45689
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|+.... ..|+..+ |+|++|++++.++++++|+
T Consensus 78 ~~Gd~V~~~~~------------------------~~g~~~~-------------------g~~~~~~~v~~~~~~~lp~ 114 (325)
T cd05280 78 REGDEVLVTGY------------------------DLGMNTD-------------------GGFAEYVRVPADWVVPLPE 114 (325)
T ss_pred CCCCEEEEccc------------------------ccCCCCC-------------------ceeEEEEEEchhhEEECCC
Confidence 99999986421 0222223 3899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHh--CCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVA--GVE-VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~--~~~-~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
++++++++.+.+.+.++|+++.... ++. .+++|+|+|+ |.+|++++++|+.+|+ +|+++++++++++.++++|++
T Consensus 115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 193 (325)
T cd05280 115 GLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGAS 193 (325)
T ss_pred CCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCc
Confidence 9999999999999999999765443 335 3579999998 9999999999999999 799999999999999999999
Q ss_pred EEECCCC
Q 024496 250 DFINPAT 256 (267)
Q Consensus 250 ~vi~~~~ 256 (267)
+++++++
T Consensus 194 ~~~~~~~ 200 (325)
T cd05280 194 EVLDRED 200 (325)
T ss_pred EEEcchh
Confidence 9998765
No 90
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.95 E-value=9.9e-27 Score=212.62 Aligned_cols=190 Identities=24% Similarity=0.276 Sum_probs=155.0
Q ss_pred ccccceeEEeec-CCC-C----eEEEEe---ecCC-CCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccce--ee
Q 024496 12 KVIRCKAAICRI-PGK-P----LVIEEI---EVEP-PKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGH--EA 79 (267)
Q Consensus 12 ~~~~~~a~~~~~-~~~-~----~~~~~~---~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~--e~ 79 (267)
...+.|.+++.+ +.+ | |++++. +.|. ++++|||||+.+++||+.|...+.+..... ..|+++|+ |+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~--~~p~~~G~~~~~ 82 (348)
T PLN03154 5 QVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSY--LPPFVPGQRIEG 82 (348)
T ss_pred ccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCC--CCCcCCCCeeEe
Confidence 344567777743 211 1 888773 5564 479999999999999999876543322221 35789998 88
Q ss_pred EEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceee
Q 024496 80 VGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTE 159 (267)
Q Consensus 80 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~ 159 (267)
+|+|..+|+++++|++||+|... |+|+|
T Consensus 83 ~G~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~ae 110 (348)
T PLN03154 83 FGVSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEE 110 (348)
T ss_pred eEEEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEE
Confidence 99999999999999999999531 27999
Q ss_pred eEEeeccc--eEE--cCCCCChh-hhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE
Q 024496 160 YSVVDITH--VVK--ITPHIPLG-IACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGV 233 (267)
Q Consensus 160 y~~v~~~~--~~~--iP~~~~~~-~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~ 233 (267)
|+.++.+. +++ +|++++++ +++.+++++.|||+++.+..++++|++|||+|+ |++|++++|+|+++|+ +|+++
T Consensus 111 y~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~ 189 (348)
T PLN03154 111 YSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGS 189 (348)
T ss_pred EEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEE
Confidence 99998753 544 58999986 688889999999998877889999999999998 9999999999999999 89999
Q ss_pred cCChhhHHHHH-HcCCCEEECCCC
Q 024496 234 DINPEKFEIGK-KFGITDFINPAT 256 (267)
Q Consensus 234 ~~~~~~~~~~~-~~G~~~vi~~~~ 256 (267)
++++++.+.++ ++|+++++|+++
T Consensus 190 ~~~~~k~~~~~~~lGa~~vi~~~~ 213 (348)
T PLN03154 190 AGSSQKVDLLKNKLGFDEAFNYKE 213 (348)
T ss_pred cCCHHHHHHHHHhcCCCEEEECCC
Confidence 99999999987 799999999875
No 91
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.95 E-value=9.4e-27 Score=210.11 Aligned_cols=168 Identities=25% Similarity=0.297 Sum_probs=147.9
Q ss_pred eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCC
Q 024496 28 LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDC 107 (267)
Q Consensus 28 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~ 107 (267)
+++.++|.|.|++|||||||.+++||+.+.. |.+... ..|.++|.|++|+|+++|+ .|++||+|+..
T Consensus 19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~--~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~----- 85 (325)
T TIGR02825 19 FELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLK--EGDTMMGQQVARVVESKNV---ALPKGTIVLAS----- 85 (325)
T ss_pred eEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCC--CCCcEecceEEEEEEeCCC---CCCCCCEEEEe-----
Confidence 8889999999999999999999999997543 433322 3578999999999999874 59999999642
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc----CCCCChhhh-hh
Q 024496 108 GECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI----TPHIPLGIA-CL 182 (267)
Q Consensus 108 ~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i----P~~~~~~~a-a~ 182 (267)
++|++|+.++.+.+.++ |++++++++ +.
T Consensus 86 -----------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~ 118 (325)
T TIGR02825 86 -----------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGT 118 (325)
T ss_pred -----------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHh
Confidence 16899999999888877 899999987 67
Q ss_pred cchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496 183 LSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 183 l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
+++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+.++++|+++++++++
T Consensus 119 l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~ 192 (325)
T TIGR02825 119 VGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKT 192 (325)
T ss_pred cccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccc
Confidence 88899999998888899999999999986 9999999999999999 8999999999999999999999999876
No 92
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.95 E-value=1.1e-26 Score=209.01 Aligned_cols=191 Identities=26% Similarity=0.260 Sum_probs=167.4
Q ss_pred cceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496 15 RCKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE 92 (267)
Q Consensus 15 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 92 (267)
+|||+++..++.. +++.+.+.|.+.++||+||+.++++|+.|.....+..+... ..|.++|||++|+|+++|++++.
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~-~~~~~~g~e~~G~v~~vG~~v~~ 79 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPP-GSSEILGLEVAGYVEDVGSDVKR 79 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCC-CCCcccceeeEEEEEEeCCCCCC
Confidence 6999999988763 66677778888999999999999999999998887654321 45678999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496 93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT 172 (267)
Q Consensus 93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP 172 (267)
+++||+|+.... + |+|++|++++.++++++|
T Consensus 80 ~~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~v~~~~~~~ip 110 (334)
T PTZ00354 80 FKEGDRVMALLP------------------------------G-------------------GGYAEYAVAHKGHVMHIP 110 (334)
T ss_pred CCCCCEEEEecC------------------------------C-------------------CceeeEEEecHHHcEeCC
Confidence 999999965311 1 389999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
+++++.+++.+.+++.+||+++.....+.++++|+|+|+ |.+|++++++|+.+|+ +++++.+++++.+.++++|++++
T Consensus 111 ~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~ 189 (334)
T PTZ00354 111 QGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIIL 189 (334)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEE
Confidence 999999999999999999998777788999999999986 9999999999999999 66778888999999999999999
Q ss_pred ECCCC
Q 024496 252 INPAT 256 (267)
Q Consensus 252 i~~~~ 256 (267)
+++..
T Consensus 190 ~~~~~ 194 (334)
T PTZ00354 190 IRYPD 194 (334)
T ss_pred EecCC
Confidence 98765
No 93
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.95 E-value=2.2e-26 Score=207.28 Aligned_cols=188 Identities=27% Similarity=0.265 Sum_probs=165.3
Q ss_pred cceeEEeecCCC----CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCC
Q 024496 15 RCKAAICRIPGK----PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYV 90 (267)
Q Consensus 15 ~~~a~~~~~~~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v 90 (267)
.|||+++.+++. ++++++++.|.+.++||+||+.++++|+.|+....|.+... ..+|.++|||++|+|+++|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~-~~~p~~~g~e~~G~v~~vG~~v 79 (329)
T cd08250 1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPG-VKPPFDCGFEGVGEVVAVGEGV 79 (329)
T ss_pred CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCC-CCCCcccCceeEEEEEEECCCC
Confidence 489999987655 48899999999999999999999999999999888866432 1578899999999999999999
Q ss_pred cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496 91 EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK 170 (267)
Q Consensus 91 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~ 170 (267)
++|++||+|+.... |+|++|+.++.+++++
T Consensus 80 ~~~~~Gd~V~~~~~--------------------------------------------------g~~~s~~~v~~~~~~~ 109 (329)
T cd08250 80 TDFKVGDAVATMSF--------------------------------------------------GAFAEYQVVPARHAVP 109 (329)
T ss_pred CCCCCCCEEEEecC--------------------------------------------------cceeEEEEechHHeEE
Confidence 99999999976321 4899999999999999
Q ss_pred cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
+|++ ..+++.+.+++.+||+++.+...+.++++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++
T Consensus 110 ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 186 (329)
T cd08250 110 VPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCD 186 (329)
T ss_pred CCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCc
Confidence 9997 34667788899999998777788999999999986 9999999999999999 799998899999999999999
Q ss_pred EEECCCC
Q 024496 250 DFINPAT 256 (267)
Q Consensus 250 ~vi~~~~ 256 (267)
++++.++
T Consensus 187 ~v~~~~~ 193 (329)
T cd08250 187 RPINYKT 193 (329)
T ss_pred eEEeCCC
Confidence 9998766
No 94
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.95 E-value=7.5e-27 Score=212.17 Aligned_cols=199 Identities=29% Similarity=0.404 Sum_probs=167.4
Q ss_pred ceeEEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 16 CKAAICRIPG-KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 16 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
|||++++.++ .++++++++.|.|+++||+||+.++++|++|+....+.. .. ..|.++|||++|+|+.+|++++.|+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~--~~~~~~g~e~~G~v~~vG~~v~~~~ 77 (339)
T cd08249 1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IP--SYPAILGCDFAGTVVEVGSGVTRFK 77 (339)
T ss_pred CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-cc--CCCceeeeeeeEEEEEeCCCcCcCC
Confidence 7899999884 338889999999999999999999999999988775543 11 3577899999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~ 174 (267)
+||+|+......|+ +...+ |+|++|++++.+.++++|++
T Consensus 78 ~Gd~V~~~~~~~~~----------------------~~~~~-------------------g~~~~~~~v~~~~~~~ip~~ 116 (339)
T cd08249 78 VGDRVAGFVHGGNP----------------------NDPRN-------------------GAFQEYVVADADLTAKIPDN 116 (339)
T ss_pred CCCEEEEEeccccC----------------------CCCCC-------------------CcccceEEechhheEECCCC
Confidence 99999876542221 01112 48999999999999999999
Q ss_pred CChhhhhhcchhhhhHHHHHHHHhCC----------CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 175 IPLGIACLLSCGVSTGVGAAWKVAGV----------EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 175 ~~~~~aa~l~~~~~ta~~a~~~~~~~----------~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++++.+++.+.++|+++.+...+ .++++|+|+|+ |.+|++++++|+.+|+ +|+++. ++++.+.+
T Consensus 117 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~ 194 (339)
T cd08249 117 ISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLV 194 (339)
T ss_pred CCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHH
Confidence 99999999999999999987655544 78999999997 8999999999999999 788877 56888999
Q ss_pred HHcCCCEEECCCCCCcccc
Q 024496 244 KKFGITDFINPATCGDKTV 262 (267)
Q Consensus 244 ~~~G~~~vi~~~~~~~~~~ 262 (267)
+++|+++++++++ +++.
T Consensus 195 ~~~g~~~v~~~~~--~~~~ 211 (339)
T cd08249 195 KSLGADAVFDYHD--PDVV 211 (339)
T ss_pred HhcCCCEEEECCC--chHH
Confidence 9999999999876 5443
No 95
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.95 E-value=3.7e-26 Score=204.89 Aligned_cols=192 Identities=21% Similarity=0.276 Sum_probs=165.3
Q ss_pred ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCC-CCCCCcccceeeEEEEEEecCCCcc
Q 024496 16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP-KLPLPVIFGHEAVGVVESVGEYVEE 92 (267)
Q Consensus 16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~~~p~~~G~e~~G~V~~vG~~v~~ 92 (267)
|||+++++++.+ +++.+.+.|.+.++||+|++.++++|+.|+....|..+.. ....|.++|||++|+|+++|+.++.
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 689999876654 6666777777889999999999999999999888765321 1256788999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496 93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT 172 (267)
Q Consensus 93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP 172 (267)
+++||+|+.... ..+ |+|++|+.++.++++++|
T Consensus 81 ~~~Gd~V~~~~~----------------------------~~~-------------------g~~~~~~~v~~~~~~~lp 113 (324)
T cd08244 81 AWLGRRVVAHTG----------------------------RAG-------------------GGYAELAVADVDSLHPVP 113 (324)
T ss_pred CCCCCEEEEccC----------------------------CCC-------------------ceeeEEEEEchHHeEeCC
Confidence 999999976421 012 489999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
+++++.+++.+.+.+.++|. +.....++++++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++++
T Consensus 114 ~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~ 191 (324)
T cd08244 114 DGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVA 191 (324)
T ss_pred CCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEE
Confidence 99999999999989999964 677888999999999986 9999999999999999 89999999999999999999999
Q ss_pred ECCCC
Q 024496 252 INPAT 256 (267)
Q Consensus 252 i~~~~ 256 (267)
+++++
T Consensus 192 ~~~~~ 196 (324)
T cd08244 192 VDYTR 196 (324)
T ss_pred EecCC
Confidence 98876
No 96
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.95 E-value=1.9e-26 Score=209.39 Aligned_cols=193 Identities=23% Similarity=0.239 Sum_probs=163.9
Q ss_pred ceeEEeecCCCC---eEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCC--------C-----CCCCCCccccee
Q 024496 16 CKAAICRIPGKP---LVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTD--------L-----PKLPLPVIFGHE 78 (267)
Q Consensus 16 ~~a~~~~~~~~~---~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~--------~-----~~~~~p~~~G~e 78 (267)
|||+++..++++ +++++++.|.| +++||+||++++++|++|+....|... . ....+|.++|||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 789998888876 88899999999 499999999999999999998877421 0 011568899999
Q ss_pred eEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccccccccee
Q 024496 79 AVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFT 158 (267)
Q Consensus 79 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a 158 (267)
++|+|+++|+.+++|++||+|+..+.. ..+ |+|+
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~---------------------------~~~-------------------g~~~ 114 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPP---------------------------WSQ-------------------GTHA 114 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCC---------------------------CCC-------------------ccce
Confidence 999999999999999999999864320 011 4899
Q ss_pred eeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCC----CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE
Q 024496 159 EYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVE----VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGV 233 (267)
Q Consensus 159 ~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~----~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~ 233 (267)
+|++++.++++++|+++++.+++.+.+.+.++|+++.+...+. +|++|+|+|+ |.+|++++++|+.+|+ +|+++
T Consensus 115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~ 193 (350)
T cd08248 115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT 193 (350)
T ss_pred eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence 9999999999999999999999999999999999876666665 4999999986 9999999999999999 78887
Q ss_pred cCChhhHHHHHHcCCCEEECCCC
Q 024496 234 DINPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 234 ~~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
.++ ++.+.++++|++++++..+
T Consensus 194 ~~~-~~~~~~~~~g~~~~~~~~~ 215 (350)
T cd08248 194 CST-DAIPLVKSLGADDVIDYNN 215 (350)
T ss_pred eCc-chHHHHHHhCCceEEECCC
Confidence 754 6788888999999998766
No 97
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.95 E-value=4.9e-26 Score=203.15 Aligned_cols=191 Identities=25% Similarity=0.324 Sum_probs=164.0
Q ss_pred ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
||++++...+.+ +++.+.+.|.+.++||+||+.++++|+.|+....+..+.. ..|.++|||++|+|+++|. ..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~--~~~~~~g~e~~G~v~~vG~--~~~ 76 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSV--KFPRVLGIEAVGEVEEAPG--GTF 76 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCC--CCCccccceeEEEEEEecC--CCC
Confidence 688888876643 6667777777899999999999999999999888876443 5688999999999999995 579
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|+.... +.+...+ |+|++|+.++..+++++|+
T Consensus 77 ~~Gd~V~~~~~------------------------~~~~~~~-------------------g~~~~~~~~~~~~~~~ip~ 113 (320)
T cd08243 77 TPGQRVATAMG------------------------GMGRTFD-------------------GSYAEYTLVPNEQVYAIDS 113 (320)
T ss_pred CCCCEEEEecC------------------------CCCCCCC-------------------cccceEEEcCHHHcEeCCC
Confidence 99999987532 0111122 3899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++++++.+.+++.+||+++.+...+.++++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|+++++
T Consensus 114 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 114 DLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVV 192 (320)
T ss_pred CCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEE
Confidence 99999999999999999998877778999999999997 9999999999999999 799999899999999999999887
Q ss_pred CC
Q 024496 253 NP 254 (267)
Q Consensus 253 ~~ 254 (267)
+.
T Consensus 193 ~~ 194 (320)
T cd08243 193 ID 194 (320)
T ss_pred ec
Confidence 54
No 98
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.95 E-value=6.6e-26 Score=203.76 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=160.9
Q ss_pred ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
|||+++..++++ +.++++|.|.|.++||+||+.++++|++|.....+..... ..+|.++|||++|+|++.| +.+|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~V~~~~--~~~~ 77 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIV-KRYPFIPGIDLAGTVVESN--DPRF 77 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCcccc-CCCCcCcccceeEEEEEcC--CCCC
Confidence 789999988774 7789999999999999999999999999987665322211 1458899999999999964 5679
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|+..+. ..|...+ |+|++|+.++.++++++|+
T Consensus 78 ~~Gd~V~~~~~------------------------~~~~~~~-------------------g~~~~~~~v~~~~~~~~p~ 114 (326)
T cd08289 78 KPGDEVIVTSY------------------------DLGVSHH-------------------GGYSEYARVPAEWVVPLPK 114 (326)
T ss_pred CCCCEEEEccc------------------------ccCCCCC-------------------CcceeEEEEcHHHeEECCC
Confidence 99999986431 0122223 4899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHH--hCC-CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKV--AGV-EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~--~~~-~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
++++++++.+++.+.+|+.++... ..+ ..+++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++
T Consensus 115 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~ 193 (326)
T cd08289 115 GLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAK 193 (326)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCC
Confidence 999999999999999998876432 233 35789999998 9999999999999999 899999999999999999999
Q ss_pred EEECCCC
Q 024496 250 DFINPAT 256 (267)
Q Consensus 250 ~vi~~~~ 256 (267)
+++++++
T Consensus 194 ~v~~~~~ 200 (326)
T cd08289 194 EVIPREE 200 (326)
T ss_pred EEEcchh
Confidence 9998765
No 99
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.95 E-value=1.3e-25 Score=201.73 Aligned_cols=193 Identities=19% Similarity=0.210 Sum_probs=161.9
Q ss_pred eeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 17 KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 17 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
||+++...+.| ++++++|.|.+.++||+||+.++++|++|+..+.|.++... ..|.++|||++|+|+. .++..|+
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~e~~G~V~~--~~~~~~~ 77 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVR-SYPMIPGIDAAGTVVS--SEDPRFR 77 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCC-CCCccceeeeEEEEEe--cCCCCCC
Confidence 67888877775 68999999999999999999999999999999888764321 4688999999999998 5667899
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~ 174 (267)
+||+|+.... +.|...+ |+|++|+.++.+.++++|++
T Consensus 78 ~Gd~V~~~~~------------------------~~~~~~~-------------------g~~~~~~~~~~~~~~~iP~~ 114 (323)
T TIGR02823 78 EGDEVIVTGY------------------------GLGVSHD-------------------GGYSQYARVPADWLVPLPEG 114 (323)
T ss_pred CCCEEEEccC------------------------CCCCCCC-------------------ccceEEEEEchhheEECCCC
Confidence 9999986431 0122222 38999999999999999999
Q ss_pred CChhhhhhcchhhhhHHHHHHHH--hCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496 175 IPLGIACLLSCGVSTGVGAAWKV--AGVEVGS-TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD 250 (267)
Q Consensus 175 ~~~~~aa~l~~~~~ta~~a~~~~--~~~~~g~-~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~ 250 (267)
+++++++.+.+.+.+++.++... ..+.+++ +|+|+|+ |.+|++++++|+.+|+ +++++.+++++.+.++++|+++
T Consensus 115 ~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~ 193 (323)
T TIGR02823 115 LSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASE 193 (323)
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcE
Confidence 99999999998999998865332 3488898 9999997 9999999999999999 7887777888889999999999
Q ss_pred EECCCC
Q 024496 251 FINPAT 256 (267)
Q Consensus 251 vi~~~~ 256 (267)
+++.++
T Consensus 194 ~~~~~~ 199 (323)
T TIGR02823 194 VIDRED 199 (323)
T ss_pred EEcccc
Confidence 998765
No 100
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.94 E-value=1.1e-25 Score=203.15 Aligned_cols=192 Identities=26% Similarity=0.283 Sum_probs=166.3
Q ss_pred ceeEEeecCCCC-----eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCC
Q 024496 16 CKAAICRIPGKP-----LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYV 90 (267)
Q Consensus 16 ~~a~~~~~~~~~-----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v 90 (267)
||++++.+++++ +..++++.|.+.+++|+|++.++++|++|++.+.+..+.. +.|.++|||++|+|+.+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~--~~~~~~g~e~~G~v~~~G~~v 78 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVP--GQPKILGWDASGVVEAVGSEV 78 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCC--CCCcccccceEEEEEEcCCCC
Confidence 689999988874 5556777788889999999999999999999887765532 567789999999999999999
Q ss_pred cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496 91 EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK 170 (267)
Q Consensus 91 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~ 170 (267)
+.|++||+|+.... ...+ |+|++|+.++.+++++
T Consensus 79 ~~~~~Gd~V~~~~~---------------------------~~~~-------------------g~~~~~~~v~~~~~~~ 112 (336)
T cd08252 79 TLFKVGDEVYYAGD---------------------------ITRP-------------------GSNAEYQLVDERIVGH 112 (336)
T ss_pred CCCCCCCEEEEcCC---------------------------CCCC-------------------ccceEEEEEchHHeee
Confidence 99999999975311 0112 3899999999999999
Q ss_pred cCCCCChhhhhhcchhhhhHHHHHHHHhCCCC-----CCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChhhHHHH
Q 024496 171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEV-----GSTVAIFGL-GAVGLAVAEGARLNR-ASKIIGVDINPEKFEIG 243 (267)
Q Consensus 171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~-----g~~VlI~G~-g~vG~~a~~la~~~g-~~~vi~~~~~~~~~~~~ 243 (267)
+|+++++++++.+++.+.++|.++.+...+.+ +++|+|+|+ |.+|++++++|+.+| + +|+++++++++.+.+
T Consensus 113 ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~ 191 (336)
T cd08252 113 KPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWV 191 (336)
T ss_pred CCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHH
Confidence 99999999999999999999998777788877 999999986 999999999999999 6 999999999999999
Q ss_pred HHcCCCEEECCCC
Q 024496 244 KKFGITDFINPAT 256 (267)
Q Consensus 244 ~~~G~~~vi~~~~ 256 (267)
+++|+++++++++
T Consensus 192 ~~~g~~~~~~~~~ 204 (336)
T cd08252 192 KELGADHVINHHQ 204 (336)
T ss_pred HhcCCcEEEeCCc
Confidence 9999999998764
No 101
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.94 E-value=1.4e-25 Score=201.46 Aligned_cols=194 Identities=14% Similarity=0.149 Sum_probs=162.5
Q ss_pred ceeEEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 16 CKAAICRIPGK--PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 16 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
|||+++.+++. .++++++|.|.|+++||+||+.++++|++|.....+.+.... ..|.++|||++|+|++ ++++++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~e~~G~V~~--~~~~~~ 77 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVR-TFPLVPGIDLAGTVVE--SSSPRF 77 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccC-CCCCccccceEEEEEe--CCCCCC
Confidence 78999998775 388999999999999999999999999999998877653221 4578899999999999 777889
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|+.... ..+...+ |+|++|++++.+.++++|+
T Consensus 78 ~~Gd~V~~~~~------------------------~~~~~~~-------------------g~~~~~~~v~~~~~~~lp~ 114 (324)
T cd08288 78 KPGDRVVLTGW------------------------GVGERHW-------------------GGYAQRARVKADWLVPLPE 114 (324)
T ss_pred CCCCEEEECCc------------------------cCCCCCC-------------------CcceeEEEEchHHeeeCCC
Confidence 99999976321 0111112 3899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHH--HHhCCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 174 HIPLGIACLLSCGVSTGVGAAW--KVAGVE-VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~--~~~~~~-~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
++++++++.+++.+.+++.++. +..+.. ++++|+|+|+ |.+|++++++|+++|+ +|++++.++++.+.++++|++
T Consensus 115 ~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~ 193 (324)
T cd08288 115 GLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGAS 193 (324)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCC
Confidence 9999999999988888887543 234455 6789999997 9999999999999999 789888899999999999999
Q ss_pred EEECCCC
Q 024496 250 DFINPAT 256 (267)
Q Consensus 250 ~vi~~~~ 256 (267)
+++++++
T Consensus 194 ~~~~~~~ 200 (324)
T cd08288 194 EIIDRAE 200 (324)
T ss_pred EEEEcch
Confidence 9998875
No 102
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.94 E-value=1.9e-25 Score=198.86 Aligned_cols=195 Identities=26% Similarity=0.323 Sum_probs=169.0
Q ss_pred ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
||++++..++.+ +++.+++.|.+.+++|+|++.++++|++|+....|..... ...|.++|||++|+|+++|+++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGL-PPLPYVPGSDGAGVVEAVGEGVDGL 79 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCC-CCCCeecccceEEEEEeeCCCCCCC
Confidence 678888776544 7788999898999999999999999999999887765432 1578899999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|+..... .+ ..+ |++++|+.++.+.++++|+
T Consensus 80 ~~Gd~v~~~~~~------------------------~~-~~~-------------------g~~~~~~~~~~~~~~~ip~ 115 (325)
T cd08253 80 KVGDRVWLTNLG------------------------WG-RRQ-------------------GTAAEYVVVPADQLVPLPD 115 (325)
T ss_pred CCCCEEEEeccc------------------------cC-CCC-------------------cceeeEEEecHHHcEeCCC
Confidence 999999875420 00 012 4899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++.+++.+.+++.++|+++....++.++++|+|+|+ +.+|++++++++.+|+ +|+++++++++.+.+.++|+++++
T Consensus 116 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~ 194 (325)
T cd08253 116 GVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVF 194 (325)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEE
Confidence 99999999999999999998777789999999999986 9999999999999998 899999999999999999999998
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
+...
T Consensus 195 ~~~~ 198 (325)
T cd08253 195 NYRA 198 (325)
T ss_pred eCCC
Confidence 8766
No 103
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.94 E-value=3.8e-25 Score=196.87 Aligned_cols=181 Identities=20% Similarity=0.246 Sum_probs=156.2
Q ss_pred ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
||++++.+.+ | +++++.+.|.++++||+||+.++++|+.|.+...+. ..|.++|||++|+|+++|+++..|
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~------~~~~~~g~e~~G~v~~~G~~v~~~ 73 (305)
T cd08270 1 MRALVVDPDA-PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER------PDGAVPGWDAAGVVERAAADGSGP 73 (305)
T ss_pred CeEEEEccCC-CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC------CCCCcccceeEEEEEEeCCCCCCC
Confidence 6888887754 3 677788889899999999999999999999876521 235789999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|+... .+ |+|++|+.++.++++++|+
T Consensus 74 ~~Gd~V~~~~------------------------------~~-------------------g~~~~~~~v~~~~~~~ip~ 104 (305)
T cd08270 74 AVGARVVGLG------------------------------AM-------------------GAWAELVAVPTGWLAVLPD 104 (305)
T ss_pred CCCCEEEEec------------------------------CC-------------------cceeeEEEEchHHeEECCC
Confidence 9999997531 11 3899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++++++.+++.+.+||+++...... ++++|+|+|+ |.+|++++++++.+|+ +|+++++++++.+.++++|++.++
T Consensus 105 ~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~ 182 (305)
T cd08270 105 GVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVV 182 (305)
T ss_pred CCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEE
Confidence 999999999999999999976554444 6999999988 9999999999999999 899999999999999999987766
Q ss_pred CC
Q 024496 253 NP 254 (267)
Q Consensus 253 ~~ 254 (267)
+.
T Consensus 183 ~~ 184 (305)
T cd08270 183 VG 184 (305)
T ss_pred ec
Confidence 43
No 104
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.94 E-value=5.9e-25 Score=200.37 Aligned_cols=195 Identities=24% Similarity=0.266 Sum_probs=160.5
Q ss_pred ceeEEeecCCCCeEEEEeecCCC---CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc-
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPP---KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE- 91 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~---~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~- 91 (267)
+|++++.++++++++++++.|.| +++||+||+.++++|++|+..+.+..... ...|.++|||++|+|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~V~~vG~~v~~ 79 (352)
T cd08247 1 YKALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHF-KVKEKGLGRDYSGVIVKVGSNVAS 79 (352)
T ss_pred CceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhccccccc-ccCCCccCceeEEEEEEeCccccc
Confidence 47899999998888888887776 89999999999999999998775432221 02377899999999999999998
Q ss_pred ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc----c
Q 024496 92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT----H 167 (267)
Q Consensus 92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~----~ 167 (267)
.|++||+|+......| ..+ |+|++|++++.. .
T Consensus 80 ~~~~Gd~V~~~~~~~~-------------------------~~~-------------------g~~~~~~~v~~~~~~~~ 115 (352)
T cd08247 80 EWKVGDEVCGIYPHPY-------------------------GGQ-------------------GTLSQYLLVDPKKDKKS 115 (352)
T ss_pred CCCCCCEEEEeecCCC-------------------------CCC-------------------ceeeEEEEEccccccce
Confidence 8999999987532110 012 489999999987 7
Q ss_pred eEEcCCCCChhhhhhcchhhhhHHHHHHHHh-CCCCCCEEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHH
Q 024496 168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVA-GVEVGSTVAIFGL-GAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGK 244 (267)
Q Consensus 168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~-~~~~g~~VlI~G~-g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~ 244 (267)
++++|+++++.+++.+++.+.++|+++.+.. .+++|++|+|+|+ +.+|++++++|+.++. ..++++.+ .++.+.++
T Consensus 116 ~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~-~~~~~~~~ 194 (352)
T cd08247 116 ITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCS-SRSAELNK 194 (352)
T ss_pred eEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEeC-hhHHHHHH
Confidence 8999999999999999999999999776656 7999999999988 7999999999998854 36777764 55566778
Q ss_pred HcCCCEEECCCC
Q 024496 245 KFGITDFINPAT 256 (267)
Q Consensus 245 ~~G~~~vi~~~~ 256 (267)
++|+++++++++
T Consensus 195 ~~g~~~~i~~~~ 206 (352)
T cd08247 195 KLGADHFIDYDA 206 (352)
T ss_pred HhCCCEEEecCC
Confidence 999999999876
No 105
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.94 E-value=3e-25 Score=198.85 Aligned_cols=178 Identities=25% Similarity=0.290 Sum_probs=158.1
Q ss_pred eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCC
Q 024496 28 LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDC 107 (267)
Q Consensus 28 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~ 107 (267)
+++++.+.|.+.+++|+||++++++|+.|...+.+...... .+|.++|||++|+|+++|++++.+++||+|+..+.
T Consensus 14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~-~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~--- 89 (323)
T cd05282 14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRP-PLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG--- 89 (323)
T ss_pred EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCC-CCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC---
Confidence 55677788888999999999999999999998877654322 56789999999999999999999999999986431
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhh
Q 024496 108 GECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGV 187 (267)
Q Consensus 108 ~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~ 187 (267)
+ |+|++|+.++...++++|+++++.+++.+.+.+
T Consensus 90 ---------------------------~-------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~ 123 (323)
T cd05282 90 ---------------------------E-------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINP 123 (323)
T ss_pred ---------------------------C-------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccH
Confidence 1 389999999999999999999999999988899
Q ss_pred hhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496 188 STGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 188 ~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
.++|+++.....+.++++|+|+|+ |.+|++++++|+.+|+ +++++.+++++.+.++++|+++++++++
T Consensus 124 ~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (323)
T cd05282 124 LTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSP 192 (323)
T ss_pred HHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccc
Confidence 999998777778899999999987 8999999999999999 8888888899999999999999999876
No 106
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.94 E-value=4.6e-25 Score=195.92 Aligned_cols=190 Identities=27% Similarity=0.332 Sum_probs=166.5
Q ss_pred ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
||++++..++.+ +++.+++.|.+.+++|+||+.++++|+.|+....+.++... .+|.++|||++|+|+++|+++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~-~~~~~~g~e~~G~v~~vg~~~~~~ 79 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPP-GASDILGLEVAGVVVAVGPGVTGW 79 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCC-CCCCcccceeEEEEEeeCCCCCCC
Confidence 789999886554 67778877778899999999999999999998877654321 567899999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|+.... + |+|++|+.++.++++++|+
T Consensus 80 ~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~ 110 (323)
T cd05276 80 KVGDRVCALLA------------------------------G-------------------GGYAEYVVVPAGQLLPVPE 110 (323)
T ss_pred CCCCEEEEecC------------------------------C-------------------CceeEEEEcCHHHhccCCC
Confidence 99999975321 1 3899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++.+++.+...+.++|+++.+...+.++++|+|+|+ |.+|++++++++.+|+ +|+++++++++.+.++++|++.++
T Consensus 111 ~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~ 189 (323)
T cd05276 111 GLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAI 189 (323)
T ss_pred CCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEE
Confidence 99999999999999999998777788999999999997 8999999999999999 799999999999999889998888
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
+...
T Consensus 190 ~~~~ 193 (323)
T cd05276 190 NYRT 193 (323)
T ss_pred eCCc
Confidence 8765
No 107
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.94 E-value=5.2e-25 Score=196.45 Aligned_cols=180 Identities=22% Similarity=0.344 Sum_probs=151.9
Q ss_pred cCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhH-hcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEe
Q 024496 23 IPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFW-KSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLP 101 (267)
Q Consensus 23 ~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 101 (267)
+++. +++++++.|.+.++||+||+.++++|+.|+..+ .+.........|.++|+|++|+|+++|+++++|++||+|+.
T Consensus 3 ~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 81 (312)
T cd08269 3 GPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAG 81 (312)
T ss_pred CCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEE
Confidence 4444 899999999999999999999999999999887 66543221135789999999999999999999999999976
Q ss_pred eccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhh
Q 024496 102 IFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIAC 181 (267)
Q Consensus 102 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa 181 (267)
... |+|++|+.++.+.++++|+++ ..++
T Consensus 82 ~~~--------------------------------------------------g~~~~~~~v~~~~~~~lP~~~--~~~~ 109 (312)
T cd08269 82 LSG--------------------------------------------------GAFAEYDLADADHAVPLPSLL--DGQA 109 (312)
T ss_pred ecC--------------------------------------------------CcceeeEEEchhheEECCCch--hhhH
Confidence 421 389999999999999999988 2333
Q ss_pred hcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496 182 LLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 182 ~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
.+..+++++++++. ..+++++++|+|+|+|.+|++++++|+.+|++.|+++.+++++.++++++|++++++.+.
T Consensus 110 ~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~ 183 (312)
T cd08269 110 FPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS 183 (312)
T ss_pred HhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC
Confidence 33367888888654 788999999999988999999999999999944999999999999999999999998765
No 108
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.93 E-value=2.1e-25 Score=203.03 Aligned_cols=186 Identities=26% Similarity=0.356 Sum_probs=151.1
Q ss_pred eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCC--CCCCcccceeeEEEEEE---ec-CCCcccCCCCEEEe
Q 024496 28 LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPK--LPLPVIFGHEAVGVVES---VG-EYVEEVKERDLVLP 101 (267)
Q Consensus 28 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~--~~~p~~~G~e~~G~V~~---vG-~~v~~~~~Gd~V~~ 101 (267)
...++.+.|.|++++++|++.++++|+.|+....|...... ..+|.+++.++.|++.. .| ..+..+..||.+..
T Consensus 20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~ 99 (347)
T KOG1198|consen 20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA 99 (347)
T ss_pred EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence 34478999999999999999999999999999998877552 13665555555555333 34 23344555655532
Q ss_pred eccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhh
Q 024496 102 IFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIAC 181 (267)
Q Consensus 102 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa 181 (267)
. .. .|+|+||+++|...++++|+++++.+|+
T Consensus 100 ~------------------------------~~-------------------~g~~aey~v~p~~~~~~~P~~l~~~~aa 130 (347)
T KOG1198|consen 100 F------------------------------LS-------------------SGGLAEYVVVPEKLLVKIPESLSFEEAA 130 (347)
T ss_pred c------------------------------cC-------------------CCceeeEEEcchhhccCCCCccChhhhh
Confidence 2 12 2499999999999999999999999999
Q ss_pred hcchhhhhHHHHHHHHh------CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496 182 LLSCGVSTGVGAAWKVA------GVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP 254 (267)
Q Consensus 182 ~l~~~~~ta~~a~~~~~------~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~ 254 (267)
.+++++.|||.+++... ++++|++|||+|+ |++|++++|+|+..++ ..+++..+++++++++++|+|+++||
T Consensus 131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy 209 (347)
T KOG1198|consen 131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDY 209 (347)
T ss_pred cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecC
Confidence 99999999999999999 9999999999976 8999999999999996 55555568999999999999999999
Q ss_pred CCCCccccccc
Q 024496 255 ATCGDKTVSQV 265 (267)
Q Consensus 255 ~~~~~~~~~~v 265 (267)
++ +++++++
T Consensus 210 ~~--~~~~e~~ 218 (347)
T KOG1198|consen 210 KD--ENVVELI 218 (347)
T ss_pred CC--HHHHHHH
Confidence 99 7776553
No 109
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=1.4e-24 Score=194.17 Aligned_cols=191 Identities=29% Similarity=0.352 Sum_probs=166.1
Q ss_pred ceeEEeecCC--CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 16 CKAAICRIPG--KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 16 ~~a~~~~~~~--~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
|||+++.+++ +.++++++|.|.+.+++|+||+.++++|++|+....+..... ..|.++|||++|+|+.+|++++.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~--~~~~~~g~e~~G~v~~~G~~~~~~ 78 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAW--SYPHVPGVDGAGVVVAVGAKVTGW 78 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCC--CCCcccccceEEEEEEeCCCCCcC
Confidence 7999999998 359999999999999999999999999999998887765432 346789999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|+.... ...+ |+|++|+.++.+.++++|+
T Consensus 79 ~~Gd~V~~~~~---------------------------~~~~-------------------~~~~s~~~~~~~~~~~ip~ 112 (325)
T cd08271 79 KVGDRVAYHAS---------------------------LARG-------------------GSFAEYTVVDARAVLPLPD 112 (325)
T ss_pred CCCCEEEeccC---------------------------CCCC-------------------ccceeEEEeCHHHeEECCC
Confidence 99999976431 0112 3899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++.+++.+.+.+.++|+++.+...+.+|++|+|+|+ |.+|++++++++.+|+ +|+++. .+++.+.+.++|++.++
T Consensus 113 ~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~ 190 (325)
T cd08271 113 SLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVI 190 (325)
T ss_pred CCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEe
Confidence 99999999999999999998777788999999999998 8999999999999999 777766 66778888889999898
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
+...
T Consensus 191 ~~~~ 194 (325)
T cd08271 191 DYND 194 (325)
T ss_pred cCCC
Confidence 8765
No 110
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=1.6e-24 Score=193.49 Aligned_cols=194 Identities=24% Similarity=0.306 Sum_probs=166.1
Q ss_pred ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
|||+++..++.+ +++++.+.|.+.+++|+|++.++++|++|+....+...... ..|.++|||++|+|+++|+++..|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~-~~~~~~g~e~~G~v~~~G~~~~~~ 79 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARP-PLPAILGCDVAGVVEAVGEGVTRF 79 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCC-CCCcccccceeEEEEEeCCCCCCC
Confidence 689999888765 77778888888999999999999999999998877654221 457889999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|+.... +.+ ... |+|++|+.++.+.++++|+
T Consensus 80 ~~Gd~V~~~~~------------------------~~~-~~~-------------------g~~~~~~~v~~~~~~~~p~ 115 (326)
T cd08272 80 RVGDEVYGCAG------------------------GLG-GLQ-------------------GSLAEYAVVDARLLALKPA 115 (326)
T ss_pred CCCCEEEEccC------------------------CcC-CCC-------------------CceeEEEEecHHHcccCCC
Confidence 99999976421 000 011 4899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++.+++.+++.+.++|+++.+...+.++++++|+|+ |.+|++++++++.+|+ +|+++.+. ++.+.++++|++.++
T Consensus 116 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~ 193 (326)
T cd08272 116 NLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPII 193 (326)
T ss_pred CCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEE
Confidence 99999999999899999998778889999999999986 9999999999999999 88888877 888888889998888
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
+...
T Consensus 194 ~~~~ 197 (326)
T cd08272 194 YYRE 197 (326)
T ss_pred ecch
Confidence 7654
No 111
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=3.3e-24 Score=192.91 Aligned_cols=187 Identities=25% Similarity=0.313 Sum_probs=162.8
Q ss_pred eeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 17 KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 17 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
||+++...+.+ +++++.+.|.|.++||+|++.++++|++|+..+.+...... .+|.++|||++|+|+.+|++++.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (331)
T cd08273 2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQP-PLPFTPGYDLVGRVDALGSGVTGFE 80 (331)
T ss_pred eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCC-CCCcccccceEEEEEEeCCCCccCC
Confidence 68888877654 78888899999999999999999999999998887764321 5688999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~ 174 (267)
+||+|..... + |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~~ 111 (331)
T cd08273 81 VGDRVAALTR------------------------------V-------------------GGNAEYINLDAKYLVPVPEG 111 (331)
T ss_pred CCCEEEEeCC------------------------------C-------------------cceeeEEEechHHeEECCCC
Confidence 9999976421 1 38999999999999999999
Q ss_pred CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496 175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253 (267)
Q Consensus 175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~ 253 (267)
+++.+++.+.+++.++|+++.+...+.++++|+|+|+ |.+|++++++|+.+|+ +|++++. +++.+.++++|++. ++
T Consensus 112 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~ 188 (331)
T cd08273 112 VDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-ID 188 (331)
T ss_pred CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-Ec
Confidence 9999999999999999998777788999999999997 9999999999999999 8888887 88888889999764 45
Q ss_pred CCC
Q 024496 254 PAT 256 (267)
Q Consensus 254 ~~~ 256 (267)
.+.
T Consensus 189 ~~~ 191 (331)
T cd08273 189 YRT 191 (331)
T ss_pred CCC
Confidence 443
No 112
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=5.4e-24 Score=189.95 Aligned_cols=195 Identities=30% Similarity=0.363 Sum_probs=166.6
Q ss_pred ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
||++++...+.+ +++.+.+.|.+.+++|+|++.++++|+.|+.+..+...... ..|.++|||++|+|+.+|+++.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~-~~~~~~g~e~~G~v~~~G~~~~~~ 79 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPP-PLPARLGYEAAGVVEAVGAGVTGF 79 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCC-CCCCCCCcceEEEEEeeCCCCCcC
Confidence 678888876543 66677777888999999999999999999988777654321 457889999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|+..+. .+...+ |++++|+.++.+.++++|+
T Consensus 80 ~~Gd~V~~~~~-------------------------~~~~~~-------------------g~~~~~~~~~~~~~~~~p~ 115 (328)
T cd08268 80 AVGDRVSVIPA-------------------------ADLGQY-------------------GTYAEYALVPAAAVVKLPD 115 (328)
T ss_pred CCCCEEEeccc-------------------------cccCCC-------------------ccceEEEEechHhcEeCCC
Confidence 99999987532 111112 3899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++.+++.+.+.+.++|+++.....+.++++|+|+|+ |.+|++++++++..|+ +++.++++.++.+.++++|++.++
T Consensus 116 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~ 194 (328)
T cd08268 116 GLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVI 194 (328)
T ss_pred CCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEE
Confidence 99999999999999999998777788999999999987 9999999999999999 889988889999999889998888
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
+.+.
T Consensus 195 ~~~~ 198 (328)
T cd08268 195 VTDE 198 (328)
T ss_pred ecCC
Confidence 8765
No 113
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.93 E-value=4.8e-24 Score=189.13 Aligned_cols=187 Identities=29% Similarity=0.333 Sum_probs=161.8
Q ss_pred eeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 17 KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 17 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
+|+.+..++.+ +.+.+.+.|.+.++||+|++.++++|+.|+....+.++. .+|.++|||++|+|+.+|+++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~---~~~~~~g~e~~G~v~~~g~~~~~~~ 77 (320)
T cd05286 1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL---PLPFVLGVEGAGVVEAVGPGVTGFK 77 (320)
T ss_pred CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC---CCCccCCcceeEEEEEECCCCCCCC
Confidence 45666655553 556677777788999999999999999999988776543 3577899999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~ 174 (267)
+||+|+... .. |+|++|+.++.+.++++|++
T Consensus 78 ~G~~V~~~~------------------------------~~-------------------g~~~~~~~~~~~~~~~~p~~ 108 (320)
T cd05286 78 VGDRVAYAG------------------------------PP-------------------GAYAEYRVVPASRLVKLPDG 108 (320)
T ss_pred CCCEEEEec------------------------------CC-------------------CceeEEEEecHHHceeCCCC
Confidence 999997632 01 38999999999999999999
Q ss_pred CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496 175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253 (267)
Q Consensus 175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~ 253 (267)
+++.+++.+.+.+.++|.++....++.++++|+|+|+ |.+|++++++++.+|+ +|+++++++++.+.++++|++++++
T Consensus 109 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~ 187 (320)
T cd05286 109 ISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVIN 187 (320)
T ss_pred CCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEe
Confidence 9999999888899999998777788999999999996 9999999999999999 8999999999999999999999988
Q ss_pred CCC
Q 024496 254 PAT 256 (267)
Q Consensus 254 ~~~ 256 (267)
..+
T Consensus 188 ~~~ 190 (320)
T cd05286 188 YRD 190 (320)
T ss_pred CCc
Confidence 765
No 114
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.92 E-value=1.6e-23 Score=185.34 Aligned_cols=193 Identities=24% Similarity=0.336 Sum_probs=162.2
Q ss_pred ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC-CCCCCCcccceeeEEEEEEecCCCcc
Q 024496 16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL-PKLPLPVIFGHEAVGVVESVGEYVEE 92 (267)
Q Consensus 16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~~~p~~~G~e~~G~V~~vG~~v~~ 92 (267)
|++++++.++.. +++++.+.|.++++||+|++.++++|+.|+..+.+.... .....|.++|||++|+|+.+|+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 678888877653 456677777789999999999999999999988776421 11145889999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496 93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT 172 (267)
Q Consensus 93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP 172 (267)
+++||+|+..+.. ..+ |+|++|+.++...++++|
T Consensus 81 ~~~G~~V~~~~~~---------------------------~~~-------------------g~~~~~~~~~~~~~~~~p 114 (309)
T cd05289 81 FKVGDEVFGMTPF---------------------------TRG-------------------GAYAEYVVVPADELALKP 114 (309)
T ss_pred CCCCCEEEEccCC---------------------------CCC-------------------CcceeEEEecHHHhccCC
Confidence 9999999865320 011 389999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
+++++..++.+.+.+.++|+++.+...+.++++|+|+|+ |.+|++++++++.+|+ +|+++..+. +.+.++++|.+++
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~ 192 (309)
T cd05289 115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEV 192 (309)
T ss_pred CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEE
Confidence 999999999988899999997766667999999999997 9999999999999999 788887766 8888888999888
Q ss_pred ECCCC
Q 024496 252 INPAT 256 (267)
Q Consensus 252 i~~~~ 256 (267)
++.+.
T Consensus 193 ~~~~~ 197 (309)
T cd05289 193 IDYTK 197 (309)
T ss_pred EeCCC
Confidence 88765
No 115
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.92 E-value=1.6e-23 Score=186.57 Aligned_cols=190 Identities=26% Similarity=0.290 Sum_probs=164.2
Q ss_pred ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496 16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV 93 (267)
Q Consensus 16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 93 (267)
||++.+..++.+ +++.+.+.|.+.+++|+|++.++++|+.|+....+.+... ..+|.++|||++|+|+.+|+.+.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~v~~vg~~~~~~ 79 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPP-PGASDILGLEVAGEVVAVGEGVSRW 79 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCC-CCCCCCccceeEEEEEEeCCCCCCC
Confidence 678888776655 5666777667889999999999999999999887765432 1457899999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496 94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP 173 (267)
Q Consensus 94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~ 173 (267)
++||+|+.... + |++++|+.++...++++|+
T Consensus 80 ~~Gd~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~ 110 (325)
T TIGR02824 80 KVGDRVCALVA------------------------------G-------------------GGYAEYVAVPAGQVLPVPE 110 (325)
T ss_pred CCCCEEEEccC------------------------------C-------------------CcceeEEEecHHHcEeCCC
Confidence 99999975311 1 3899999999999999999
Q ss_pred CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++.+++.+.+.+.++|+++.+...+.++++++|+|+ |.+|++++++++.+|+ +|+++.+++++.+.++++|++.++
T Consensus 111 ~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~ 189 (325)
T TIGR02824 111 GLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAI 189 (325)
T ss_pred CCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEE
Confidence 99999999999999999998778889999999999987 9999999999999999 889998899998888889988888
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
+...
T Consensus 190 ~~~~ 193 (325)
T TIGR02824 190 NYRE 193 (325)
T ss_pred ecCc
Confidence 7655
No 116
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.92 E-value=2e-23 Score=184.49 Aligned_cols=172 Identities=28% Similarity=0.332 Sum_probs=152.3
Q ss_pred cCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccc
Q 024496 35 VEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCK 114 (267)
Q Consensus 35 ~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~ 114 (267)
.|.+.+++|+||+.++++|+.|+....+.++.. ..+|.++|+|++|+|+++|+++++|++||+|+....
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---------- 70 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTM-PPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG---------- 70 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCC-CCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC----------
Confidence 467889999999999999999999988775432 156889999999999999999999999999976432
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHH
Q 024496 115 SSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAA 194 (267)
Q Consensus 115 ~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~ 194 (267)
..+ |+|++|+.++.+.++++|+++++.+++.+++.+.++|+++
T Consensus 71 ------------------~~~-------------------g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l 113 (303)
T cd08251 71 ------------------ESM-------------------GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF 113 (303)
T ss_pred ------------------CCC-------------------cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH
Confidence 012 3899999999999999999999999999999999999975
Q ss_pred HHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496 195 WKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 195 ~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
+...++++++|+|+++ |.+|++++++++.+|+ +|+++.+.+++.+.++++|++++++..+
T Consensus 114 -~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~ 174 (303)
T cd08251 114 -ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE 174 (303)
T ss_pred -HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCC
Confidence 6788999999999965 9999999999999999 8999998999999999999999998876
No 117
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.91 E-value=2.7e-24 Score=164.79 Aligned_cols=108 Identities=34% Similarity=0.596 Sum_probs=94.7
Q ss_pred CCeEEEEEeeeeCChhhHHhHhcC-CCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCC
Q 024496 40 AWEIRIKILCTSLCHSDVTFWKSS-TDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKS 118 (267)
Q Consensus 40 ~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~ 118 (267)
|+||||||++++||++|++.+.+. .... .+|.++|||++|+|+++|+++++|++||+|++.+...|+.|++|..+.+
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~--~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~ 78 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPP--KFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRP 78 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTS--SSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCC--CCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcc
Confidence 689999999999999999999994 3333 7899999999999999999999999999999999888999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496 119 NTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI 171 (267)
Q Consensus 119 ~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i 171 (267)
++|.+... +|+..+| +|+||+++|.++++|+
T Consensus 79 ~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 79 NLCPNPEV---LGLGLDG-------------------GFAEYVVVPARNLVPV 109 (109)
T ss_dssp GGTTTBEE---TTTSSTC-------------------SSBSEEEEEGGGEEEE
T ss_pred ccCCCCCE---eEcCCCC-------------------cccCeEEEehHHEEEC
Confidence 99977665 5666666 9999999999999985
No 118
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.91 E-value=1.1e-22 Score=180.76 Aligned_cols=189 Identities=30% Similarity=0.445 Sum_probs=161.6
Q ss_pred ceeEEeecCCCC--eEEEEeecCCCC-CCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496 16 CKAAICRIPGKP--LVIEEIEVEPPK-AWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE 92 (267)
Q Consensus 16 ~~a~~~~~~~~~--~~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~ 92 (267)
|+|+++..++.+ +++.+.+ |.+. +++|+|++.++++|++|+..+.+.+.... ..|.++|||++|.|+.+|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~ 78 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKP-PLPFVPGSEVAGVVEAVGEGVTG 78 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCC-CCCCcccceeEEEEEEeCCCCCC
Confidence 688888755443 6666777 6666 49999999999999999998877653221 34678999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496 93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT 172 (267)
Q Consensus 93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP 172 (267)
+++||+|+.... . |++++|+.++.+.++++|
T Consensus 79 ~~~G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip 109 (323)
T cd08241 79 FKVGDRVVALTG------------------------------Q-------------------GGFAEEVVVPAAAVFPLP 109 (323)
T ss_pred CCCCCEEEEecC------------------------------C-------------------ceeEEEEEcCHHHceeCC
Confidence 999999976430 1 389999999999999999
Q ss_pred CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
++++..+++.+.+.+.+||.++.....+.++++|+|+|+ |.+|++++++++.+|+ .|++++++.++.+.++++|++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~ 188 (323)
T cd08241 110 DGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHV 188 (323)
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCcee
Confidence 999999988888899999998776788999999999997 9999999999999999 79999989999999999999888
Q ss_pred ECCCC
Q 024496 252 INPAT 256 (267)
Q Consensus 252 i~~~~ 256 (267)
++..+
T Consensus 189 ~~~~~ 193 (323)
T cd08241 189 IDYRD 193 (323)
T ss_pred eecCC
Confidence 88766
No 119
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.91 E-value=9.6e-23 Score=183.44 Aligned_cols=185 Identities=22% Similarity=0.207 Sum_probs=152.3
Q ss_pred eeEEeecCC----C--CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCC-CCCCCcccceeeEEEEEEecCC
Q 024496 17 KAAICRIPG----K--PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP-KLPLPVIFGHEAVGVVESVGEY 89 (267)
Q Consensus 17 ~a~~~~~~~----~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~~~p~~~G~e~~G~V~~vG~~ 89 (267)
|++++...+ . .++++++|.|.+.+++|+||+.++++|+.|.....+..... ....+.++|+|++|+|+++|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~ 82 (329)
T cd05288 3 RQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP 82 (329)
T ss_pred cEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC
Confidence 556665433 1 28889999999999999999999999998876555432211 0023467899999999999964
Q ss_pred CcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec-cce
Q 024496 90 VEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI-THV 168 (267)
Q Consensus 90 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~-~~~ 168 (267)
+|++||+|+.. ++|++|+.++. +.+
T Consensus 83 --~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~~ 108 (329)
T cd05288 83 --DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASGL 108 (329)
T ss_pred --CCCCCCEEecc----------------------------------------------------cceEEEEEecchhhc
Confidence 79999999642 26999999999 999
Q ss_pred EEcCCCCC--hhhhhh-cchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 169 VKITPHIP--LGIACL-LSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 169 ~~iP~~~~--~~~aa~-l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
+++|++++ +..++. +.+.+.++|+++.+...+.++++|||+|+ |.+|++++++|+.+|+ +|+++++++++.+.++
T Consensus 109 ~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~ 187 (329)
T cd05288 109 RKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLV 187 (329)
T ss_pred EECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence 99999985 545555 78899999998777788999999999986 9999999999999999 8999999999999998
Q ss_pred H-cCCCEEECCCC
Q 024496 245 K-FGITDFINPAT 256 (267)
Q Consensus 245 ~-~G~~~vi~~~~ 256 (267)
+ +|+++++++++
T Consensus 188 ~~~g~~~~~~~~~ 200 (329)
T cd05288 188 EELGFDAAINYKT 200 (329)
T ss_pred hhcCCceEEecCC
Confidence 8 99999999876
No 120
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.91 E-value=1.1e-22 Score=181.29 Aligned_cols=180 Identities=24% Similarity=0.291 Sum_probs=154.6
Q ss_pred EEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCC-CCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCC
Q 024496 29 VIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP-KLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDC 107 (267)
Q Consensus 29 ~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~ 107 (267)
++++.+.|.+.++||+|++.++++|++|+..+.|.+... ....|.++|||++|+|.++|+++.+|++||+|+.....
T Consensus 15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~-- 92 (319)
T cd08267 15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP-- 92 (319)
T ss_pred ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence 677888888999999999999999999999987765310 01356789999999999999999999999999765321
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhh
Q 024496 108 GECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGV 187 (267)
Q Consensus 108 ~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~ 187 (267)
... |+|++|+.++.+.++++|+++++.+++.+.+.+
T Consensus 93 -------------------------~~~-------------------g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 128 (319)
T cd08267 93 -------------------------KGG-------------------GALAEYVVAPESGLAKKPEGVSFEEAAALPVAG 128 (319)
T ss_pred -------------------------CCC-------------------ceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence 011 389999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496 188 STGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 188 ~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
.+||+++.....+.++++|+|+|+ |.+|++++++|+.+|+ +|++++++ ++.+.++++|++++++.+.
T Consensus 129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~ 196 (319)
T cd08267 129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTT 196 (319)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC
Confidence 999998766667999999999997 9999999999999999 88888765 7888889999999988765
No 121
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.90 E-value=7.4e-23 Score=178.19 Aligned_cols=180 Identities=21% Similarity=0.250 Sum_probs=150.2
Q ss_pred eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEec--CCCcccCCCCEEEeeccC
Q 024496 28 LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG--EYVEEVKERDLVLPIFHR 105 (267)
Q Consensus 28 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG--~~v~~~~~Gd~V~~~~~~ 105 (267)
|++++++.|+|+++|||||+.+.+++|.... +....+.- -.|+-+|...+|.++... +..+.|++||.|+..
T Consensus 27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRg-rm~d~~SY--~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~--- 100 (340)
T COG2130 27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRG-RMSDAPSY--APPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV--- 100 (340)
T ss_pred ceeEeccCCCCCcCceEEEEEEeccCHHHee-cccCCccc--CCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec---
Confidence 9999999999999999999999999995332 32322221 346778888777666643 557789999999653
Q ss_pred CCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCCh--hhhhhc
Q 024496 106 DCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPL--GIACLL 183 (267)
Q Consensus 106 ~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~--~~aa~l 183 (267)
.+|++|..++.+.+.++.++.-+ .....+
T Consensus 101 -------------------------------------------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvL 131 (340)
T COG2130 101 -------------------------------------------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVL 131 (340)
T ss_pred -------------------------------------------------ccceEEEeechhhceecCCCCCCcchHHhhc
Confidence 27999999999999999865422 334457
Q ss_pred chhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCCEEECCCCCCccc
Q 024496 184 SCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGITDFINPATCGDKT 261 (267)
Q Consensus 184 ~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~~vi~~~~~~~~~ 261 (267)
.++..|||.++++..+.++|++|+|.+| |++|..+.|+||.+|+ +|+++..+++|.+.+++ +|+|.+|||++ +++
T Consensus 132 GmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~--~d~ 208 (340)
T COG2130 132 GMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA--EDF 208 (340)
T ss_pred CCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc--ccH
Confidence 7899999999999999999999999987 9999999999999999 99999999999999987 99999999999 887
Q ss_pred cccc
Q 024496 262 VSQV 265 (267)
Q Consensus 262 ~~~v 265 (267)
.+++
T Consensus 209 ~~~L 212 (340)
T COG2130 209 AQAL 212 (340)
T ss_pred HHHH
Confidence 6654
No 122
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.90 E-value=2.7e-22 Score=175.25 Aligned_cols=161 Identities=24% Similarity=0.247 Sum_probs=144.5
Q ss_pred CeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCC
Q 024496 41 WEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNT 120 (267)
Q Consensus 41 ~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 120 (267)
+||+||+.++++|++|++...+..+ .+|.++|||++|+|+++|+.++.|++||+|+....
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~~----~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~---------------- 60 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLLP----GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLAP---------------- 60 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCCC----CCCCccceeeeEEEEeecCCccCCCCCCEEEEEec----------------
Confidence 5899999999999999999887652 45789999999999999999999999999976421
Q ss_pred CCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCC
Q 024496 121 CSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGV 200 (267)
Q Consensus 121 c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~ 200 (267)
|+|++|+.++.+.++++|+++++.+++.+.+++.++|.++.+...+
T Consensus 61 ----------------------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 106 (293)
T cd05195 61 ----------------------------------GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARL 106 (293)
T ss_pred ----------------------------------CcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhcc
Confidence 3899999999999999999999999999988999999987777899
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC--CCEEECCCC
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG--ITDFINPAT 256 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G--~~~vi~~~~ 256 (267)
++|++|+|+|+ |.+|++++++++.+|+ ++++++++.++.+.++++| ++.++++++
T Consensus 107 ~~g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (293)
T cd05195 107 QKGESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRD 164 (293)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCc
Confidence 99999999975 9999999999999999 8999988889999998888 788888765
No 123
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.89 E-value=1.1e-21 Score=176.22 Aligned_cols=188 Identities=23% Similarity=0.302 Sum_probs=155.5
Q ss_pred eeEEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496 17 KAAICRIPGK--PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK 94 (267)
Q Consensus 17 ~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~ 94 (267)
|++++...+. .+++.+.+.|.+.+++|+|++.++++|+.|...+.+.+... ...|.++|||++|+|+.+|+.+++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~~ 79 (337)
T cd08275 1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSA-PKPPFVPGFECAGTVEAVGEGVKDFK 79 (337)
T ss_pred CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCC-CCCCCCCcceeEEEEEEECCCCcCCC
Confidence 4556655443 26777777778899999999999999999999887765422 14577899999999999999999999
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496 95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174 (267)
Q Consensus 95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~ 174 (267)
+||+|+.... + |+|++|+.++.+.++++|++
T Consensus 80 ~G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~~ 110 (337)
T cd08275 80 VGDRVMGLTR------------------------------F-------------------GGYAEVVNVPADQVFPLPDG 110 (337)
T ss_pred CCCEEEEecC------------------------------C-------------------CeeeeEEEecHHHeEECCCC
Confidence 9999976421 1 38999999999999999999
Q ss_pred CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhHHHHHHcCCCEEE
Q 024496 175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD-INPEKFEIGKKFGITDFI 252 (267)
Q Consensus 175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~-~~~~~~~~~~~~G~~~vi 252 (267)
+++.+++.+.+.+.++|+++.+...++++++|+|+|+ |.+|++++++|+.+ . .+.+++ ..+++.+.++++|++.++
T Consensus 111 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~-~-~~~~~~~~~~~~~~~~~~~g~~~~~ 188 (337)
T cd08275 111 MSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV-P-NVTVVGTASASKHEALKENGVTHVI 188 (337)
T ss_pred CCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc-c-CcEEEEeCCHHHHHHHHHcCCcEEe
Confidence 9999999999999999998878888999999999997 99999999999998 2 233332 235577888889999898
Q ss_pred CCCC
Q 024496 253 NPAT 256 (267)
Q Consensus 253 ~~~~ 256 (267)
+.++
T Consensus 189 ~~~~ 192 (337)
T cd08275 189 DYRT 192 (337)
T ss_pred eCCC
Confidence 8776
No 124
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.88 E-value=1e-21 Score=171.59 Aligned_cols=156 Identities=24% Similarity=0.277 Sum_probs=140.9
Q ss_pred EEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCC
Q 024496 45 IKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKF 124 (267)
Q Consensus 45 Vkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~ 124 (267)
||+.++++|++|++...+.++ .|.++|||++|+|+++|+.++.|++||+|+....
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~-----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~-------------------- 56 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP-----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP-------------------- 56 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC-----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEcC--------------------
Confidence 789999999999999877643 3578999999999999999999999999976421
Q ss_pred CCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCC
Q 024496 125 GRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGS 204 (267)
Q Consensus 125 ~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~ 204 (267)
|+|++|+.++.++++++|+++++.+++.+.+.+.++|+++.+...+.+|+
T Consensus 57 ------------------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~ 106 (288)
T smart00829 57 ------------------------------GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGE 106 (288)
T ss_pred ------------------------------CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCC
Confidence 38999999999999999999999999999999999999876778899999
Q ss_pred EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC--CEEECCCC
Q 024496 205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI--TDFINPAT 256 (267)
Q Consensus 205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~--~~vi~~~~ 256 (267)
+|+|+|+ |.+|++++++++.+|+ +|+++++++++.+.++++|+ +.++++++
T Consensus 107 ~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (288)
T smart00829 107 SVLIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRD 160 (288)
T ss_pred EEEEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCC
Confidence 9999985 9999999999999999 89999999999999999998 78888766
No 125
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.79 E-value=1.9e-18 Score=152.08 Aligned_cols=132 Identities=30% Similarity=0.398 Sum_probs=118.3
Q ss_pred CCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceec
Q 024496 70 PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIH 149 (267)
Q Consensus 70 ~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 149 (267)
++|.++|||++|+|+++|+++++|++||+|+..
T Consensus 19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~----------------------------------------------- 51 (277)
T cd08255 19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF----------------------------------------------- 51 (277)
T ss_pred cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-----------------------------------------------
Confidence 588999999999999999999999999999763
Q ss_pred ccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCe
Q 024496 150 HFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASK 229 (267)
Q Consensus 150 ~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~ 229 (267)
+.|++|++++.+.++++|+++++.+++.+ +.+.+||+++ ...++.++++++|+|+|.+|++++++|+.+|+.+
T Consensus 52 -----~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~ 124 (277)
T cd08255 52 -----GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGARE 124 (277)
T ss_pred -----CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Confidence 15899999999999999999999999888 7899999975 5788999999999988999999999999999944
Q ss_pred EEEEcCChhhHHHHHHcC-CCEEECCC
Q 024496 230 IIGVDINPEKFEIGKKFG-ITDFINPA 255 (267)
Q Consensus 230 vi~~~~~~~~~~~~~~~G-~~~vi~~~ 255 (267)
|+++++++++.+.++++| ++++++..
T Consensus 125 vi~~~~~~~~~~~~~~~g~~~~~~~~~ 151 (277)
T cd08255 125 VVGVDPDAARRELAEALGPADPVAADT 151 (277)
T ss_pred EEEECCCHHHHHHHHHcCCCccccccc
Confidence 999999999999989999 66666553
No 126
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.76 E-value=5.6e-17 Score=141.22 Aligned_cols=170 Identities=26% Similarity=0.261 Sum_probs=131.1
Q ss_pred EEeecC-CCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccce----eeEEEEEEecCCCcccCCCCEEEeeccC
Q 024496 31 EEIEVE-PPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGH----EAVGVVESVGEYVEEVKERDLVLPIFHR 105 (267)
Q Consensus 31 ~~~~~p-~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~----e~~G~V~~vG~~v~~~~~Gd~V~~~~~~ 105 (267)
.+++.+ .+++++||||.++-+..|..--.+....+... -.|+.+|. .++|+|++ +..++|++||.|....
T Consensus 27 ~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y-~~~~~~G~pi~g~GV~kVi~--S~~~~~~~GD~v~g~~-- 101 (343)
T KOG1196|consen 27 TTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDY-APPYEPGKPIDGFGVAKVID--SGHPNYKKGDLVWGIV-- 101 (343)
T ss_pred eeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccc-cCcccCCcEecCCceEEEEe--cCCCCCCcCceEEEec--
Confidence 445544 45889999999999999885433322222110 12344443 67888888 4667899999995431
Q ss_pred CCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc--eEEcC--CCCChhhhh
Q 024496 106 DCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH--VVKIT--PHIPLGIAC 181 (267)
Q Consensus 106 ~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~--~~~iP--~~~~~~~aa 181 (267)
+|.||.+++.+. .++|+ .++++....
T Consensus 102 --------------------------------------------------gWeeysii~~~~~~~~ki~~~~~~pLs~yl 131 (343)
T KOG1196|consen 102 --------------------------------------------------GWEEYSVITPNDLEHFKIQHPTDVPLSYYL 131 (343)
T ss_pred --------------------------------------------------cceEEEEecCcchhcccCCCCCccCHhhhh
Confidence 799999997653 44444 455655533
Q ss_pred -hcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCCEEECCCC
Q 024496 182 -LLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGITDFINPAT 256 (267)
Q Consensus 182 -~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~~~vi~~~~ 256 (267)
++.++..|||.++++....++|++|+|.|| |++|+++.|+|+.+|+ +|+++..++||..+++ +||+|..+||++
T Consensus 132 g~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~ 208 (343)
T KOG1196|consen 132 GLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE 208 (343)
T ss_pred hccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccC
Confidence 577899999999999999999999999987 9999999999999999 9999999999999997 579999999999
No 127
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.57 E-value=5.8e-15 Score=146.00 Aligned_cols=162 Identities=17% Similarity=0.097 Sum_probs=138.3
Q ss_pred CCCeEEEEEeeeeCChhhHHhHhcCCCCCCC-----CCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCccc
Q 024496 39 KAWEIRIKILCTSLCHSDVTFWKSSTDLPKL-----PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDC 113 (267)
Q Consensus 39 ~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~-----~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c 113 (267)
+++.=+--|.|+.||..|+.+..|..+.+.. +.-..+|-||+|+ .+-|.||.....
T Consensus 1443 ~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRvM~mvp--------- 1503 (2376)
T KOG1202|consen 1443 CPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRVMGMVP--------- 1503 (2376)
T ss_pred CCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEEEEeee---------
Confidence 5666688899999999999999998876631 2236899999997 567999965422
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHH
Q 024496 114 KSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGA 193 (267)
Q Consensus 114 ~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a 193 (267)
.- ++++.+.++.+++|.+|.+...++|+..+|.|+|+|+|
T Consensus 1504 ---------------------Ak-------------------sLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYA 1543 (2376)
T KOG1202|consen 1504 ---------------------AK-------------------SLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYA 1543 (2376)
T ss_pred ---------------------hh-------------------hhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhh
Confidence 11 78999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCCEEECCCCCCcccc
Q 024496 194 AWKVAGVEVGSTVAIF-GLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK----FGITDFINPATCGDKTV 262 (267)
Q Consensus 194 ~~~~~~~~~g~~VlI~-G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~~ 262 (267)
+..+...++|++|||+ |+|++|++||.+|.+.|+ +|+-+..++||++.+++ +-..++-|+++ .+|-
T Consensus 1544 LVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRd--tsFE 1614 (2376)
T KOG1202|consen 1544 LVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANSRD--TSFE 1614 (2376)
T ss_pred hhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhchhhhhhccccccc--ccHH
Confidence 9999999999999999 569999999999999999 99999999999998863 45677788877 6553
No 128
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=98.27 E-value=1.1e-06 Score=68.50 Aligned_cols=50 Identities=34% Similarity=0.481 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCCCCccccccc
Q 024496 213 AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKTVSQV 265 (267)
Q Consensus 213 ~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~v 265 (267)
++|++++|+|+++|+ +|++++++++|++.++++|+++++|+++ +++.+++
T Consensus 1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~--~~~~~~i 50 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD--DDFVEQI 50 (130)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT--SSHHHHH
T ss_pred ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc--ccccccc
Confidence 589999999999996 9999999999999999999999999999 7665554
No 129
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.17 E-value=9.4e-06 Score=77.69 Aligned_cols=56 Identities=23% Similarity=0.233 Sum_probs=51.2
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE-ECCCC
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF-INPAT 256 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v-i~~~~ 256 (267)
..++++|+|+|+|.+|+++++.|+.+|+ +|+++|++++++++++++|++.+ +|..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e 218 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEE 218 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEecccc
Confidence 5689999999999999999999999999 89999999999999999999854 67644
No 130
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.92 E-value=3.6e-07 Score=85.76 Aligned_cols=133 Identities=20% Similarity=0.208 Sum_probs=90.9
Q ss_pred ccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccccc
Q 024496 74 IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLN 153 (267)
Q Consensus 74 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~ 153 (267)
.-|.|+++.+.+|+++.++ +|++.+.+ ||.|.+| ++.|.+... .|...++
T Consensus 89 ~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~l~~----------------- 138 (417)
T TIGR01035 89 LTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKVLER----------------- 138 (417)
T ss_pred cCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHHHHH-----------------
Confidence 4688999999999988766 67777777 8999999 445544443 3333333
Q ss_pred ccceeeeEEeeccceEE---c-CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCe
Q 024496 154 ISSFTEYSVVDITHVVK---I-TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASK 229 (267)
Q Consensus 154 ~g~~a~y~~v~~~~~~~---i-P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~ 229 (267)
.|++++.++. .+.. | +..++...++ ..-..+..+..++++|+|+|+|.+|.++++.++..|+.+
T Consensus 139 --lf~~a~~~~k-~vr~~t~i~~~~vSv~~~A---------v~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~ 206 (417)
T TIGR01035 139 --LFQKAFSVGK-RVRTETDISAGAVSISSAA---------VELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGK 206 (417)
T ss_pred --HHHHHHHHhh-hhhhhcCCCCCCcCHHHHH---------HHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCE
Confidence 7888888765 3322 2 2222222221 111233445577899999999999999999999999779
Q ss_pred EEEEcCChhhHH-HHHHcCC
Q 024496 230 IIGVDINPEKFE-IGKKFGI 248 (267)
Q Consensus 230 vi~~~~~~~~~~-~~~~~G~ 248 (267)
|++++++.++.+ +++++|.
T Consensus 207 V~v~~rs~~ra~~la~~~g~ 226 (417)
T TIGR01035 207 ILIANRTYERAEDLAKELGG 226 (417)
T ss_pred EEEEeCCHHHHHHHHHHcCC
Confidence 999999988755 4555654
No 131
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.52 E-value=0.00037 Score=65.21 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=50.2
Q ss_pred HHHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496 192 GAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD 250 (267)
Q Consensus 192 ~a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~ 250 (267)
.++.+..+ ..+|++|+|+|.|.+|+.+++.++.+|+ +|+++++++.|++.++++|++.
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~ 248 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEV 248 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEE
Confidence 44555444 4789999999999999999999999999 8999999999999999999853
No 132
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.50 E-value=2.4e-06 Score=80.39 Aligned_cols=135 Identities=21% Similarity=0.188 Sum_probs=82.0
Q ss_pred ccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccccc
Q 024496 74 IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLN 153 (267)
Q Consensus 74 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~ 153 (267)
.-|||+++.+.+|+++.++ +|++-+.+ ||.|.. .++.|.+.+. .|...+
T Consensus 91 ~~g~ea~~hl~~V~~GldS-----~V~GE~qI-lgQvk~----a~~~a~~~g~---~g~~l~------------------ 139 (423)
T PRK00045 91 HEGEEAVRHLFRVASGLDS-----MVLGEPQI-LGQVKD----AYALAQEAGT---VGTILN------------------ 139 (423)
T ss_pred cCCHHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHH----HHHHHHHcCC---chHHHH------------------
Confidence 4599999999999999877 44444443 444441 1222322221 111111
Q ss_pred ccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHh---CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeE
Q 024496 154 ISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVA---GVEVGSTVAIFGLGAVGLAVAEGARLNRASKI 230 (267)
Q Consensus 154 ~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~---~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~v 230 (267)
+.|++.+.+ |+.+..+.+.. ..+.+.++.++.... +..++++|+|+|+|.+|.+++..++..|+.+|
T Consensus 140 -~lf~~a~~~--------~k~v~~~t~i~-~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V 209 (423)
T PRK00045 140 -RLFQKAFSV--------AKRVRTETGIG-AGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKI 209 (423)
T ss_pred -HHHHHHHHH--------HhhHhhhcCCC-CCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeE
Confidence 245554444 33333222222 224455555543222 23678999999999999999999999998899
Q ss_pred EEEcCChhhHH-HHHHcCCC
Q 024496 231 IGVDINPEKFE-IGKKFGIT 249 (267)
Q Consensus 231 i~~~~~~~~~~-~~~~~G~~ 249 (267)
++++++.++.+ +++++|.+
T Consensus 210 ~v~~r~~~ra~~la~~~g~~ 229 (423)
T PRK00045 210 TVANRTLERAEELAEEFGGE 229 (423)
T ss_pred EEEeCCHHHHHHHHHHcCCc
Confidence 99999988865 55666653
No 133
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.29 E-value=0.0004 Score=62.76 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=64.8
Q ss_pred ceEEcCCCCChhhhhhcchhhhhHHHHHHHHhC---CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH-HH
Q 024496 167 HVVKITPHIPLGIACLLSCGVSTGVGAAWKVAG---VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKF-EI 242 (267)
Q Consensus 167 ~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~---~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~-~~ 242 (267)
..+++|+.+..+.++... +.+.++.++..... .-++.+|+|+|+|.+|.++++.++..|..+|+++++++++. ++
T Consensus 140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l 218 (311)
T cd05213 140 KAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEEL 218 (311)
T ss_pred HHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 456778888888887765 66677765432222 24789999999999999999999988887999999998876 55
Q ss_pred HHHcCCCEEEC
Q 024496 243 GKKFGITDFIN 253 (267)
Q Consensus 243 ~~~~G~~~vi~ 253 (267)
++++|.. +++
T Consensus 219 a~~~g~~-~~~ 228 (311)
T cd05213 219 AKELGGN-AVP 228 (311)
T ss_pred HHHcCCe-EEe
Confidence 6678873 444
No 134
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.14 E-value=0.0015 Score=62.76 Aligned_cols=50 Identities=26% Similarity=0.268 Sum_probs=46.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
.++++|+|+|+|.+|++++++++.+|+ .|++++++.++++.++++|++.+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v 211 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFL 211 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEE
Confidence 467899999999999999999999999 79999999999999999998763
No 135
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.91 E-value=0.0061 Score=53.25 Aligned_cols=83 Identities=23% Similarity=0.291 Sum_probs=56.3
Q ss_pred ceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 024496 156 SFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI 235 (267)
Q Consensus 156 ~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~ 235 (267)
+|.+|.. +...++.+++++++..+..-. ... ....+. ....++++||-+|+|. |.+++.+++ .|+.+|+++|.
T Consensus 78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~t-t~~-~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDi 150 (250)
T PRK00517 78 SWEDPPD-PDEINIELDPGMAFGTGTHPT-TRL-CLEALE--KLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDI 150 (250)
T ss_pred CCcCCCC-CCeEEEEECCCCccCCCCCHH-HHH-HHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEEC
Confidence 3555544 667788899888887654322 111 122121 2257899999999987 877776655 67767999999
Q ss_pred ChhhHHHHHH
Q 024496 236 NPEKFEIGKK 245 (267)
Q Consensus 236 ~~~~~~~~~~ 245 (267)
++..++.+++
T Consensus 151 s~~~l~~A~~ 160 (250)
T PRK00517 151 DPQAVEAARE 160 (250)
T ss_pred CHHHHHHHHH
Confidence 9988887754
No 136
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.89 E-value=0.0029 Score=61.80 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=46.1
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC---------------------hhhHHHHHHcCCCEEECC
Q 024496 199 GVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN---------------------PEKFEIGKKFGITDFINP 254 (267)
Q Consensus 199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~---------------------~~~~~~~~~~G~~~vi~~ 254 (267)
....|++|+|+|+|++|+++++.++.+|+ +|++++.. ..+++.++++|++..++.
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~ 208 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGV 208 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 46789999999999999999999999999 78888742 356677888998877764
No 137
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.78 E-value=0.0053 Score=48.49 Aligned_cols=48 Identities=31% Similarity=0.340 Sum_probs=42.2
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc
Q 024496 199 GVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KF 246 (267)
Q Consensus 199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~ 246 (267)
+--++.+++|+|+|+.|.+++..+...|+++|+++.|+.+|.+.+. ++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 3457899999999999999999999999988999999999887765 45
No 138
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.70 E-value=0.012 Score=52.74 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=42.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
.+++|+|+|.|.+|++++..++.+|+ +|+++++++++.+.++++|+.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~ 197 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLS 197 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCe
Confidence 68999999999999999999999999 999999998888777777754
No 139
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.66 E-value=0.0075 Score=56.76 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=46.7
Q ss_pred HHHHHHHHhCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 190 GVGAAWKVAGVE-VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 190 a~~a~~~~~~~~-~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
.|.++.+..++. .|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|++
T Consensus 198 ~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~ 257 (425)
T PRK05476 198 LLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR 257 (425)
T ss_pred hHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE
Confidence 344444443544 89999999999999999999999999 899999988887665555543
No 140
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.56 E-value=0.0097 Score=55.69 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=46.2
Q ss_pred HHHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496 192 GAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248 (267)
Q Consensus 192 ~a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~ 248 (267)
.++.+..+ ...|++|+|+|.|.+|+..++.++.+|+ +|+++++++.+...+...|+
T Consensus 183 ~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~ 239 (406)
T TIGR00936 183 DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGF 239 (406)
T ss_pred HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCC
Confidence 33444444 4789999999999999999999999999 89999988888776666676
No 141
>PLN02494 adenosylhomocysteinase
Probab=96.18 E-value=0.022 Score=54.17 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=46.4
Q ss_pred HHHHHHHhCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 191 VGAAWKVAGV-EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 191 ~~a~~~~~~~-~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
+.++.+..++ -.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+.
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~ 299 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQ 299 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCe
Confidence 3445555554 679999999999999999999999999 899999888776666555553
No 142
>PRK04148 hypothetical protein; Provisional
Probab=95.85 E-value=0.041 Score=43.51 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=42.2
Q ss_pred hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496 198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253 (267)
Q Consensus 198 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~ 253 (267)
....++.+++++|.| .|...+..+..+|. .|+++|.+++..+.+++.+.+.+.+
T Consensus 12 ~~~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~d 65 (134)
T PRK04148 12 YEKGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVD 65 (134)
T ss_pred cccccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEEC
Confidence 334567899999999 88755555556798 9999999999999999888765543
No 143
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.85 E-value=0.026 Score=46.20 Aligned_cols=48 Identities=27% Similarity=0.302 Sum_probs=40.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
..+|+|+|+|.+|+.|+.+++.+|+ ++++.+...++++.....++..+
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i 67 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFI 67 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEES
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceE
Confidence 3789999999999999999999999 99999999998888888776544
No 144
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.63 E-value=0.038 Score=53.06 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=43.2
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 199 GVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
.+.++++|+|+|.|..|++++.+++..|+ +|+++|..+++.+.++++|+.
T Consensus 8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~ 57 (488)
T PRK03369 8 PLLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVA 57 (488)
T ss_pred cccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCE
Confidence 35678999999999999999999999999 999999887777667777874
No 145
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.58 E-value=0.073 Score=47.51 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=39.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
..+++|+|+|+|+.|.+++..+..+|+.+|++++|+.+|.+.+.
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la 168 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA 168 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 45689999999999999999999999989999999998877663
No 146
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.51 E-value=0.088 Score=47.07 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=39.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~ 248 (267)
.|++++|+|.|.+|.+.+..++.+|+ +|+++++++++.+.+.++|.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~ 195 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGL 195 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCC
Confidence 57899999999999999999999999 99999999887766655554
No 147
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.50 E-value=0.084 Score=46.85 Aligned_cols=47 Identities=23% Similarity=0.042 Sum_probs=40.1
Q ss_pred hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 198 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
.+...+++++|+|+|+.+.+++..+..+|+.+|+++.|+.++.+.+.
T Consensus 117 ~~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la 163 (272)
T PRK12550 117 YQVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA 163 (272)
T ss_pred cCCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 34555679999999999999999998999988999999998887664
No 148
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.20 E-value=0.063 Score=49.76 Aligned_cols=46 Identities=30% Similarity=0.307 Sum_probs=38.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGI 248 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~ 248 (267)
++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+. .+|.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~ 212 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG 212 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc
Confidence 44669999999999999999999999 8999999988877664 3443
No 149
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.17 E-value=0.17 Score=48.29 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=42.9
Q ss_pred HHHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496 192 GAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248 (267)
Q Consensus 192 ~a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~ 248 (267)
.++.+..+ .-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~ 298 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGY 298 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCc
Confidence 33444433 4579999999999999999999999999 89999887766644444454
No 150
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.16 E-value=0.061 Score=47.30 Aligned_cols=48 Identities=33% Similarity=0.512 Sum_probs=40.6
Q ss_pred HhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChhhHHHHHH
Q 024496 197 VAGVEVGSTVAIFGLGAVGLAVAEGARLNRAS-KIIGVDINPEKFEIGKK 245 (267)
Q Consensus 197 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-~vi~~~~~~~~~~~~~~ 245 (267)
...++++++||.+|+|. |..+.++++..+.. +|+++|.+++.++.+++
T Consensus 72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~ 120 (272)
T PRK11873 72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARA 120 (272)
T ss_pred hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence 35688999999999987 88888888877763 79999999999988875
No 151
>PRK08017 oxidoreductase; Provisional
Probab=95.15 E-value=0.078 Score=45.58 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=40.1
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
++++|.|+ |.+|...++.+...|+ +|++++++.++++.++++++..+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~ 50 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGI 50 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEE
Confidence 57999998 9999999999998898 89999999988887777776443
No 152
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.12 E-value=0.099 Score=46.65 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=38.3
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
..+++++|+|+|+.+.+++..+...|+++++++.|+.+|.+.+.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La 168 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence 45789999999999999888888899989999999998877664
No 153
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.08 E-value=0.092 Score=44.34 Aligned_cols=54 Identities=41% Similarity=0.529 Sum_probs=44.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCCEEECCC
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGITDFINPA 255 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~~vi~~~ 255 (267)
--.|.+|+|+|.|.+|..+++.+...|+ +|+++++++++.+.+++ +|+. .++..
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~-~v~~~ 79 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT-VVAPE 79 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE-EEcch
Confidence 4467899999999999999999999999 99999999988777654 4753 44443
No 154
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.98 E-value=0.072 Score=47.47 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=38.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
++++++|+|+|+.+.+++..+..+|+.+|+++.|+.+|.+.+.
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La 166 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV 166 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 5789999999999999999998999989999999988877664
No 155
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.90 E-value=0.081 Score=47.20 Aligned_cols=46 Identities=28% Similarity=0.208 Sum_probs=40.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
..++++++|+|+|+.+.+++.-+...|+.+|.++.|+.+|.+.+.+
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD 168 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 3468999999999999999999999998899999999999877753
No 156
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.84 E-value=0.073 Score=46.74 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=39.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
.+++|+|.|+ |++|...++.+...|+ +|+++++++++++.+.+.+..
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~ 50 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLE 50 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCce
Confidence 3578999998 9999999888888899 999999999888777666654
No 157
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.78 E-value=0.16 Score=44.98 Aligned_cols=44 Identities=23% Similarity=0.103 Sum_probs=38.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
..+++++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+.
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~ 164 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELA 164 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 46788999999999999999999999779999999998876654
No 158
>PRK08324 short chain dehydrogenase; Validated
Probab=94.69 E-value=0.068 Score=53.45 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=54.5
Q ss_pred ceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 024496 156 SFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD 234 (267)
Q Consensus 156 ~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~ 234 (267)
++.+|..++...++.+ +..+.+++...... .....+|+++||.|+ |++|.+.++.+...|+ +|++++
T Consensus 386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~~----------~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~ 453 (681)
T PRK08324 386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRMP----------KPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD 453 (681)
T ss_pred hcCCccCCChhhhcce-eeehhhhhhhhcCC----------CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence 5667777777666666 44555555321100 122346899999986 9999999999999999 899999
Q ss_pred CChhhHHHHH
Q 024496 235 INPEKFEIGK 244 (267)
Q Consensus 235 ~~~~~~~~~~ 244 (267)
++.++.+.+.
T Consensus 454 r~~~~~~~~~ 463 (681)
T PRK08324 454 LDEEAAEAAA 463 (681)
T ss_pred CCHHHHHHHH
Confidence 9988766543
No 159
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.63 E-value=0.11 Score=44.22 Aligned_cols=41 Identities=32% Similarity=0.267 Sum_probs=36.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
++++|+|.|+ |.+|..+++.+...|+ +|+++++++++.+.+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRM 45 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4689999987 8999999999999999 999999988877665
No 160
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.56 E-value=0.11 Score=42.85 Aligned_cols=46 Identities=37% Similarity=0.538 Sum_probs=37.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G 247 (267)
-.|++|.|+|.|.+|...++.++.+|+ +|++.++.........+.+
T Consensus 34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~ 79 (178)
T PF02826_consen 34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFG 79 (178)
T ss_dssp STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTT
T ss_pred cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccc
Confidence 468999999999999999999999999 9999998887655333333
No 161
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.18 E-value=0.16 Score=48.49 Aligned_cols=52 Identities=31% Similarity=0.423 Sum_probs=41.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh---------------------hhHHHHHHcCCCEEECC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP---------------------EKFEIGKKFGITDFINP 254 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~---------------------~~~~~~~~~G~~~vi~~ 254 (267)
.+++|+|+|+|+.|+.++..++..|. +|++++..+ ...++++++|++..++.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 57899999999999999999999999 788887653 24566778898755554
No 162
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.17 E-value=0.13 Score=44.97 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=36.8
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
+++||.|+ |++|...++.+...|+ +|++++++.++.+.+.+.+..
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~ 47 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFT 47 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe
Confidence 47899987 9999999998888899 999999988777766555543
No 163
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=94.11 E-value=0.17 Score=44.61 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=38.5
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
...+.+++|.|| +++|...+..+-..|. +++.+.|+++|++.+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la 47 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALA 47 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHH
Confidence 456789999998 8999988887777899 9999999999998875
No 164
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.10 E-value=0.24 Score=44.23 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=32.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
..+++++|+|+|++|.+++..+...|+++|+++.|+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4578899999999999988888888997799999885
No 165
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.94 E-value=0.24 Score=44.28 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.++++++|+|+|+.+.+++..+...|+.++.++.|++
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 3667999999999998877766678998999999984
No 166
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=93.94 E-value=0.18 Score=43.80 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=40.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG 247 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G 247 (267)
+++.++|.|+ +++|.+.++.....|+ +|+.+.|..++++.+. +++
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~ 51 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIG 51 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhc
Confidence 4577899998 8999999999999999 9999999999998876 577
No 167
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.89 E-value=0.38 Score=40.08 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=35.3
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
.++.+++|+|+ |.+|...+..+...|+ +|+++.|+.++.+.+.
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~ 69 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAA 69 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence 36789999997 9999988888877887 9999999988766543
No 168
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.86 E-value=0.5 Score=38.82 Aligned_cols=71 Identities=14% Similarity=0.082 Sum_probs=46.7
Q ss_pred hhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCH-HHHHHHHHHHHcCCCeEEEEcCChhhHHH-HHHcCCCEEECC
Q 024496 181 CLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGA-VGLAVAEGARLNRASKIIGVDINPEKFEI-GKKFGITDFINP 254 (267)
Q Consensus 181 a~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~-vG~~a~~la~~~g~~~vi~~~~~~~~~~~-~~~~G~~~vi~~ 254 (267)
...+|....+...+.....--.+.+|+|+|+|. +|..++.++...|+ +|.++.++.+.+.. +. .+|-||..
T Consensus 22 ~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~l~~~l~--~aDiVIsa 94 (168)
T cd01080 22 GFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKNLKEHTK--QADIVIVA 94 (168)
T ss_pred CccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchhHHHHHh--hCCEEEEc
Confidence 444544444444333334457899999999985 69989999998999 78888877644432 32 34555544
No 169
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.85 E-value=0.47 Score=37.65 Aligned_cols=52 Identities=35% Similarity=0.354 Sum_probs=39.5
Q ss_pred HhCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCC
Q 024496 197 VAGV-EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFGI 248 (267)
Q Consensus 197 ~~~~-~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G~ 248 (267)
..++ ..+.+++|+|+|.+|...+..+...|..+|++++++.++.+.+ ++++.
T Consensus 12 ~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~ 65 (155)
T cd01065 12 EAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE 65 (155)
T ss_pred hhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 3443 5578999999999999988888877655899999998877654 34443
No 170
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.84 E-value=0.2 Score=43.08 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=36.0
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.++++|+|+|+ |.+|...+..+...|+ +|+++++++++++.+
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~ 49 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKEL 49 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 45789999987 9999999998888899 899999988876544
No 171
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=93.79 E-value=0.19 Score=42.74 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=38.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
-|.+|||.|+ +++|++.++-...+|- +||+++|++++++.++.
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~ 47 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKA 47 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHh
Confidence 3678999975 8999998888888898 99999999999999876
No 172
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.54 E-value=0.23 Score=44.17 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=37.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG 247 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G 247 (267)
+++++||.|+ |++|.+.++.+...|+ +|+++++++++++.+. +++
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~ 54 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELG 54 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc
Confidence 5789999987 8999999999988999 8999999988776543 444
No 173
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.52 E-value=0.24 Score=37.33 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=39.5
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496 206 VAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
|+|.|.|.+|...++.++..+. +|++++.++++.+.+++.|.. ++..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~-~i~gd~ 49 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE-VIYGDA 49 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE-EEES-T
T ss_pred eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc-cccccc
Confidence 6788999999999999998665 999999999999999998854 544433
No 174
>PRK07814 short chain dehydrogenase; Provisional
Probab=93.51 E-value=0.24 Score=43.05 Aligned_cols=41 Identities=12% Similarity=0.094 Sum_probs=35.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++||.|+ |.+|...++.+...|+ +|+++++++++.+.+
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~ 50 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEV 50 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 5789999987 8999999998888999 999999988766544
No 175
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.51 E-value=0.23 Score=42.34 Aligned_cols=41 Identities=22% Similarity=0.260 Sum_probs=34.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
++.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~ 45 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERV 45 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4678999997 9999998888888899 799999998776554
No 176
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=93.42 E-value=0.094 Score=28.34 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=15.9
Q ss_pred ceeEEeecCCCCeEEEEeecCCC
Q 024496 16 CKAAICRIPGKPLVIEEIEVEPP 38 (267)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~p~~ 38 (267)
|||++++++++ .+++++|.|.+
T Consensus 1 MkAv~y~G~~~-v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKD-VRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEEETTE-EEEEEE----S
T ss_pred CcceEEeCCCc-eEEEECCCccc
Confidence 89999999999 99999998865
No 177
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.41 E-value=0.25 Score=42.57 Aligned_cols=45 Identities=29% Similarity=0.403 Sum_probs=36.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFG 247 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G 247 (267)
++++|+|.|+ |.+|...++.+...|+ +|+++++++++.+.. .+++
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~ 52 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVG 52 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcC
Confidence 5789999998 9999999998888898 899999888766544 3344
No 178
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.34 E-value=0.25 Score=43.06 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=35.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++||.|+ +++|.+.++.+...|+ +|+++++++++++.+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~ 48 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKA 48 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 5788999987 8999999998888999 899999988776554
No 179
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=93.32 E-value=0.26 Score=42.63 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=35.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
++++++|.|+ +++|...+..+...|+ +|+++++++++.+.+.
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~ 47 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLR 47 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 5789999987 8999999888888899 8999999887776654
No 180
>PRK07060 short chain dehydrogenase; Provisional
Probab=93.31 E-value=0.33 Score=41.28 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=37.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGI 248 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~ 248 (267)
++++++|.|+ |.+|...++.+...|+ +|++++++.++.+.+.+ .+.
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~ 55 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGC 55 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence 5689999997 8999999999998999 89999998877765543 344
No 181
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.30 E-value=0.23 Score=49.51 Aligned_cols=35 Identities=34% Similarity=0.427 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.+++|+|+|+|+.|++++..+..+|+ +|+++++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 57899999999999999999999999 788887653
No 182
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.28 E-value=0.32 Score=41.89 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=37.9
Q ss_pred hCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 198 AGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 198 ~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
....++.++||.|+ |.+|...+..+...|+ +|++++++++..+.+.
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~ 52 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATA 52 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 34467899999988 9999999999888999 8999999877666544
No 183
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.26 E-value=0.25 Score=49.10 Aligned_cols=52 Identities=29% Similarity=0.338 Sum_probs=42.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh---------------------hHHHHHHcCCCEEECC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE---------------------KFEIGKKFGITDFINP 254 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~---------------------~~~~~~~~G~~~vi~~ 254 (267)
.+++|+|+|+|+.|+.++..++.+|. +|.++++.+. +.++++++|++..++.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 48999999999999999999999999 7888876652 4566778888765554
No 184
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=93.26 E-value=1.5 Score=39.74 Aligned_cols=96 Identities=10% Similarity=0.069 Sum_probs=61.0
Q ss_pred ceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHh---CCCCCCEEEEEcC-CHHHHHHHHHHH-HcCCCeE
Q 024496 156 SFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVA---GVEVGSTVAIFGL-GAVGLAVAEGAR-LNRASKI 230 (267)
Q Consensus 156 ~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~---~~~~g~~VlI~G~-g~vG~~a~~la~-~~g~~~v 230 (267)
.|-+|.++..+..+. .+.+..++++-+ .+.|.|- +.+-. +.-..+.|+|..| +-.++..+.+++ ..+.-++
T Consensus 90 ~YN~Y~r~~~d~~y~--~~~e~~~~LlrP-Lf~Tsfl-l~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~ 165 (314)
T PF11017_consen 90 IYNQYLRVSADPAYD--PEREDWQMLLRP-LFITSFL-LDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKV 165 (314)
T ss_pred hhhceeecCCCcccC--cchhHHHHHHHH-HHHHHHH-HHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceE
Confidence 466777776555442 122233344444 6677776 43332 2444567777776 788888888877 4555589
Q ss_pred EEEcCChhhHHHHHHcC-CCEEECCCC
Q 024496 231 IGVDINPEKFEIGKKFG-ITDFINPAT 256 (267)
Q Consensus 231 i~~~~~~~~~~~~~~~G-~~~vi~~~~ 256 (267)
|++.+ +......+.+| .|+|+.|++
T Consensus 166 vglTS-~~N~~Fve~lg~Yd~V~~Yd~ 191 (314)
T PF11017_consen 166 VGLTS-ARNVAFVESLGCYDEVLTYDD 191 (314)
T ss_pred EEEec-CcchhhhhccCCceEEeehhh
Confidence 99985 44555788899 489999988
No 185
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.24 E-value=0.72 Score=37.68 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=39.0
Q ss_pred HHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 194 AWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 194 ~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
+.+..+ .-.|++++|+|=|.+|...++.++.+|+ +|++++.++-+.-++..-|++
T Consensus 13 i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~ 68 (162)
T PF00670_consen 13 IMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE 68 (162)
T ss_dssp HHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E
T ss_pred HHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE
Confidence 444444 5689999999999999999999999999 999999999777666555543
No 186
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.23 E-value=0.48 Score=40.82 Aligned_cols=37 Identities=30% Similarity=0.292 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRAS--KIIGVDIN 236 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~--~vi~~~~~ 236 (267)
--++++|+|+|+|..|.+++..+...|+. ++++++++
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 35678999999999999999988888998 89999998
No 187
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.22 E-value=0.28 Score=42.17 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=34.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
+++++||.|+ |.+|...++.+...|+ +|+++++++++.+.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~ 49 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAA 49 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 5789999987 9999999888888899 89999998776544
No 188
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.17 E-value=0.3 Score=41.66 Aligned_cols=41 Identities=32% Similarity=0.338 Sum_probs=34.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++||.|+ |++|...++.+...|+ +|+++++++++.+..
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~ 45 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEA 45 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 5789999987 9999999998888898 899999887665443
No 189
>PRK06182 short chain dehydrogenase; Validated
Probab=93.17 E-value=0.36 Score=42.08 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=37.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~ 248 (267)
++++++|.|+ |.+|...++.+...|+ +|+++++++++++.+.+.+.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~ 48 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGV 48 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCC
Confidence 4678999997 8999999998888899 99999998887765544443
No 190
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.13 E-value=0.3 Score=42.06 Aligned_cols=41 Identities=20% Similarity=0.097 Sum_probs=35.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.++++||.|+ +++|.+.+..+...|+ +|++++++.++.+.+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 49 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKL 49 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence 5789999987 8999999988888999 899999988776554
No 191
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.05 E-value=0.53 Score=44.32 Aligned_cols=50 Identities=18% Similarity=0.111 Sum_probs=41.3
Q ss_pred hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496 198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG 247 (267)
Q Consensus 198 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G 247 (267)
.+--.+.+|+|+|+|.+|.+++..+...|+.+++++.|+.++.+.+. +++
T Consensus 176 ~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~ 226 (414)
T PRK13940 176 LDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR 226 (414)
T ss_pred hcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc
Confidence 34456789999999999999999999999889999999988766554 454
No 192
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.05 E-value=0.3 Score=41.37 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=34.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+.+++|+|+ |.+|...++.+...|+ +|+++++++++.+.+
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEA 46 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHH
Confidence 4688999987 9999998888888899 899999988766544
No 193
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=93.02 E-value=0.3 Score=42.33 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=35.9
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
++++++|.|+ |++|...++.+...|+ +|++++++.++.+.+++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEA 47 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh
Confidence 4789999987 8999999988888899 89999998877666544
No 194
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.91 E-value=0.32 Score=43.26 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=34.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+++++|.|+ |++|.+.++.+...|+ +|++++++.++++.+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~ 80 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAV 80 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 4578999987 9999998888888898 999999998776554
No 195
>PLN02780 ketoreductase/ oxidoreductase
Probab=92.90 E-value=0.27 Score=44.45 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=35.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.|++++|.|+ +++|.+.+..+...|+ +|+++++++++++.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~ 93 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDV 93 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHH
Confidence 5889999998 8999988877777899 899999999887655
No 196
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.90 E-value=0.27 Score=48.06 Aligned_cols=47 Identities=13% Similarity=-0.009 Sum_probs=39.7
Q ss_pred HHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 196 KVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 196 ~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
...+.+.|++|||+|+ |.+|...+..+...|+ +|++++|+.++.+.+
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l 120 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESL 120 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 3456778999999998 9999999988888898 899999998877544
No 197
>PRK07831 short chain dehydrogenase; Provisional
Probab=92.90 E-value=0.32 Score=42.05 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=35.7
Q ss_pred CCCCCEEEEEcC-C-HHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 200 VEVGSTVAIFGL-G-AVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 200 ~~~g~~VlI~G~-g-~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+.++++++|.|+ | ++|.+.++.+...|+ +|++++++.++++..
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~ 58 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGET 58 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 456789999987 6 799999999999999 899998888766544
No 198
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.84 E-value=0.35 Score=40.07 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=31.5
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+|.|+|+|.+|...+.++-..|. +|..++.+++.++..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~ 38 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERA 38 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhh
Confidence 58899999999998888888899 999999999877654
No 199
>PRK06139 short chain dehydrogenase; Provisional
Probab=92.81 E-value=0.3 Score=44.37 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=35.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+++++|.|+ +++|.+.++.+...|+ +|+++++++++++.+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~ 47 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAV 47 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 5688999998 8999999998888999 899999998887644
No 200
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.77 E-value=0.35 Score=41.51 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=35.1
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
-++++++|.|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 45 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEV 45 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 35788999987 8999998888888999 899999888765544
No 201
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.75 E-value=0.36 Score=41.99 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=34.6
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
.+++++||.|+ |.+|...++.+...|+ +|+++++++++.+.
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~ 48 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDA 48 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 35789999987 8999999988888999 89999988776543
No 202
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.73 E-value=0.62 Score=41.08 Aligned_cols=43 Identities=23% Similarity=0.132 Sum_probs=35.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
..++++++|+|+|++|.+.+..+...|+ +|+++++++++.+.+
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~l 156 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEEL 156 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 3557899999999999998888888898 999999998776554
No 203
>PRK12828 short chain dehydrogenase; Provisional
Probab=92.73 E-value=0.33 Score=40.88 Aligned_cols=38 Identities=26% Similarity=0.276 Sum_probs=32.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKF 240 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~ 240 (267)
+++++||+|+ |.+|...++.+...|+ +|++++++.++.
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~ 44 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPL 44 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhH
Confidence 4789999987 9999999988888899 899999876553
No 204
>PRK07062 short chain dehydrogenase; Provisional
Probab=92.70 E-value=0.35 Score=41.84 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=34.9
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+++++|.|+ +++|.+.++.+...|+ +|+++++++++++.+
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 48 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASA 48 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 5788999987 8999999988888899 899999988776544
No 205
>PRK06500 short chain dehydrogenase; Provisional
Probab=92.64 E-value=0.38 Score=40.96 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=36.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFGI 248 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G~ 248 (267)
++++++|.|+ |.+|...++.+...|+ +|+++++++++.+.+ +++|.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~ 52 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGE 52 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCC
Confidence 4678999987 9999999998888999 899999887665543 33443
No 206
>PRK07035 short chain dehydrogenase; Provisional
Probab=92.60 E-value=0.4 Score=41.13 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=34.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
++++++|.|+ |.+|.+.++.+...|+ +|+.++++.++.+.+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~ 48 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAV 48 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4678999987 8999999998888899 999999887665443
No 207
>PRK06180 short chain dehydrogenase; Provisional
Probab=92.58 E-value=0.41 Score=41.92 Aligned_cols=43 Identities=19% Similarity=0.114 Sum_probs=36.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
.++++||.|+ |.+|.+.++.+...|+ +|+++++++++++.+.+
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEA 46 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHh
Confidence 3578999987 9999999988888899 89999998887766554
No 208
>PRK08703 short chain dehydrogenase; Provisional
Probab=92.58 E-value=0.37 Score=41.01 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=34.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
++++++|.|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~ 46 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKV 46 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHH
Confidence 4679999987 9999998888888899 899999988766544
No 209
>PRK07063 short chain dehydrogenase; Provisional
Probab=92.57 E-value=0.39 Score=41.46 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+++++|.|+ +++|...+..+...|+ +|+++++++++.+.+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~ 47 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERA 47 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4688999987 8999999988888899 899999888766554
No 210
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=92.51 E-value=0.41 Score=41.27 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=34.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++||.|+ |.+|...++.+...|+ +|++++++.++++.+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 52 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEA 52 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 5789999987 9999998888888899 899999988776544
No 211
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.48 E-value=0.4 Score=41.72 Aligned_cols=41 Identities=27% Similarity=0.231 Sum_probs=34.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+.+++|.|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~ 45 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKET 45 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 3678999997 8999998888888899 899999988877654
No 212
>PRK09072 short chain dehydrogenase; Provisional
Probab=92.48 E-value=0.4 Score=41.48 Aligned_cols=42 Identities=31% Similarity=0.370 Sum_probs=35.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
++.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~ 46 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALA 46 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence 4678999987 9999998888888898 8999999887765543
No 213
>PRK08265 short chain dehydrogenase; Provisional
Probab=92.34 E-value=0.43 Score=41.39 Aligned_cols=45 Identities=24% Similarity=0.289 Sum_probs=36.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFG 247 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G 247 (267)
++++++|.|+ +.+|...+..+...|+ +|++++++.++.+.+ ++++
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~ 51 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG 51 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC
Confidence 5689999987 8999999988888999 999999988765544 3344
No 214
>PRK09291 short chain dehydrogenase; Provisional
Probab=92.32 E-value=0.43 Score=40.92 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=33.1
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
++++||.|+ |.+|...++.+...|+ +|++++++.++.+.+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~ 42 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTAL 42 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 457999987 9999999999988998 899998877655443
No 215
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.31 E-value=0.43 Score=39.59 Aligned_cols=49 Identities=20% Similarity=0.176 Sum_probs=40.7
Q ss_pred CCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 202 VGSTVAIFGLG-AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 202 ~g~~VlI~G~g-~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
.|..|++.|+| ++|...++-+...|+ +||++.|+++.+..+.+.-..+|
T Consensus 6 aG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV~e~p~~I 55 (245)
T KOG1207|consen 6 AGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLVKETPSLI 55 (245)
T ss_pred cceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHHhhCCcce
Confidence 67889999985 999999988888999 99999999998888766544333
No 216
>PRK06194 hypothetical protein; Provisional
Probab=92.28 E-value=0.42 Score=41.86 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=33.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.++++||.|+ |++|...+..+...|+ +|++++++.++++..
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 46 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRA 46 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence 4678999987 9999998888888899 899999887665443
No 217
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.25 E-value=0.44 Score=40.92 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=34.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+++++|.|+ +++|...+..+...|+ +|+++++++++.+.+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~ 46 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQL 46 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4678999987 8999998888888899 899999988776554
No 218
>PRK05854 short chain dehydrogenase; Provisional
Probab=92.25 E-value=0.43 Score=42.86 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=34.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+++++|.|+ +++|.+.+..+...|+ +|++++|+.++.+.+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~ 54 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAA 54 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4789999987 8999998888877898 999999988766543
No 219
>PRK07677 short chain dehydrogenase; Provisional
Probab=92.24 E-value=0.43 Score=41.03 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=33.7
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++|.|+ +++|...++.+...|+ +|++++++.++.+.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~ 41 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEA 41 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 468999987 8999999998888999 899999888766544
No 220
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=92.19 E-value=0.62 Score=43.42 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=45.3
Q ss_pred hhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496 188 STGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF 246 (267)
Q Consensus 188 ~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~ 246 (267)
...+..+.+..+++++++||-+|+| .|..+..+++..|+ +|++++.+++.++.+++.
T Consensus 153 ~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~ 209 (383)
T PRK11705 153 EAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQER 209 (383)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH
Confidence 3444445677889999999999984 45667788888888 999999999999888763
No 221
>PRK06125 short chain dehydrogenase; Provisional
Probab=92.19 E-value=0.46 Score=41.02 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=34.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
++++++|.|+ +++|...++.+...|+ +|+++++++++.+.+
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 47 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEAL 47 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 4789999987 8999998888888899 999999988776553
No 222
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.19 E-value=0.35 Score=45.06 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=38.5
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G 247 (267)
.+|||+|+|.+|+.+++.+-..+-.+|++.+|+.++...+.+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~ 45 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI 45 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc
Confidence 47999999999999999988788569999999999999887653
No 223
>PRK06841 short chain dehydrogenase; Provisional
Probab=92.16 E-value=0.57 Score=40.14 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=34.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
+++++||.|+ |.+|...++.+...|+ +|++++++++..+...+
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~ 57 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQ 57 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 4789999997 9999998888888899 89999988765554444
No 224
>PRK06172 short chain dehydrogenase; Provisional
Probab=92.14 E-value=0.47 Score=40.70 Aligned_cols=40 Identities=23% Similarity=0.181 Sum_probs=33.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
++++++|.|+ |.+|...+..+...|+ +|+++++++++.+.
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~ 46 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEE 46 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 4689999987 8999998888877898 89999998766543
No 225
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=92.13 E-value=0.47 Score=40.56 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=35.8
Q ss_pred CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 199 GVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 199 ~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
...++++++|.|+ |.+|...++.+...|+ +|++++++.++.+.+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~ 52 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAV 52 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Confidence 3557889999987 9999998888888899 999999987665443
No 226
>PRK07454 short chain dehydrogenase; Provisional
Probab=92.13 E-value=0.54 Score=39.98 Aligned_cols=42 Identities=17% Similarity=0.050 Sum_probs=34.9
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
...++++|.|+ |.+|...+..+...|. +|+++++++++.+.+
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEAL 46 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 35678999987 9999999988888899 899999988766544
No 227
>PRK06101 short chain dehydrogenase; Provisional
Probab=92.11 E-value=0.44 Score=40.69 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=34.7
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496 204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF 246 (267)
Q Consensus 204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~ 246 (267)
.+++|.|+ |++|...+..+...|+ +|+++++++++++.+.+.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~ 44 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQ 44 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh
Confidence 46899987 9999988877777899 899999998887766543
No 228
>PRK06196 oxidoreductase; Provisional
Probab=92.10 E-value=0.45 Score=42.61 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=34.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+++|+|.|+ |++|...+..+...|+ +|++++++.++.+.+
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~ 66 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREA 66 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 5688999997 8999998888888899 899999988766543
No 229
>PRK09186 flagellin modification protein A; Provisional
Probab=92.03 E-value=0.48 Score=40.59 Aligned_cols=41 Identities=27% Similarity=0.358 Sum_probs=34.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++||.|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~ 44 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNEL 44 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHH
Confidence 5789999987 8999998888888899 899998888776544
No 230
>PRK12939 short chain dehydrogenase; Provisional
Probab=92.01 E-value=0.51 Score=40.14 Aligned_cols=42 Identities=19% Similarity=0.049 Sum_probs=34.6
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.++++++|+|+ |.+|...+..+...|+ +|+++++++++.+..
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~ 47 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEAREL 47 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 35788999987 9999999988888899 888888887765543
No 231
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.96 E-value=0.51 Score=40.55 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=34.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++||.|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~ 47 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAV 47 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHH
Confidence 4789999998 9999998888888899 889999888655443
No 232
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.89 E-value=0.53 Score=40.28 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=34.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++||.|+ |.+|...+..+...|+ +|+++++++++.+..
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~ 44 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAA 44 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 4678999987 9999998888888899 899999988766544
No 233
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=91.79 E-value=0.56 Score=40.29 Aligned_cols=41 Identities=32% Similarity=0.444 Sum_probs=34.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.++++||.|+ |++|.+.+..+...|+ +|++++++.++.+.+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~ 49 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELA 49 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH
Confidence 4778999987 8999998888888898 999999887765443
No 234
>PRK05875 short chain dehydrogenase; Provisional
Probab=91.75 E-value=0.55 Score=40.89 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=34.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
+++++||.|+ |.+|...++.+...|+ +|+++++++++.+.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~ 46 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAA 46 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence 4689999997 8999999999988999 89999988766543
No 235
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=91.74 E-value=1.3 Score=39.52 Aligned_cols=44 Identities=27% Similarity=0.422 Sum_probs=35.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
..++++||-+|+|. |.+++.+++ .|+.+|+++|.++..++.+++
T Consensus 157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~ 200 (288)
T TIGR00406 157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARK 200 (288)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence 56789999999877 777777666 577799999999988777754
No 236
>PRK09242 tropinone reductase; Provisional
Probab=91.73 E-value=0.57 Score=40.32 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=34.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.++++||.|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~ 49 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQA 49 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 4789999987 8999999988888899 899999888776544
No 237
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.71 E-value=0.44 Score=37.73 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=34.7
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 206 VAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
|+|+|+|.+|...+..++..|. +|..+.+.+ +.+.+++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~ 42 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLT 42 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEE
Confidence 6899999999988877777888 899999877 77777776653
No 238
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=91.70 E-value=0.47 Score=38.57 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=32.6
Q ss_pred EEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 206 VAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 206 VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
|+|+|+ |.+|...++.+...|. +|+++.|++++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc
Confidence 789998 9999999999999997 99999999988764
No 239
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.68 E-value=0.69 Score=44.14 Aligned_cols=51 Identities=27% Similarity=0.261 Sum_probs=38.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh-----hHHHHHHcCCCEEE
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE-----KFEIGKKFGITDFI 252 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~-----~~~~~~~~G~~~vi 252 (267)
..+++|+|+|+|.+|+.++.+++..|+ +|.+++..+. ..+.+++.|..-..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~ 69 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRL 69 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEE
Confidence 356799999999999999999999999 8888885542 23445667765443
No 240
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.67 E-value=0.55 Score=42.66 Aligned_cols=41 Identities=27% Similarity=0.202 Sum_probs=34.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+++|+|.|+ |++|...++.+...|+ +|+++++++++++.+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~ 48 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEAL 48 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 4678999987 8999999988888999 899999988776544
No 241
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.65 E-value=0.59 Score=40.12 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=33.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
++++++|.|+ |.+|...+..+...|+ +|+++++++++++.
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~ 50 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEA 50 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 5789999987 8999998888777899 89999998766544
No 242
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=91.60 E-value=0.56 Score=42.11 Aligned_cols=41 Identities=29% Similarity=0.213 Sum_probs=34.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+++++|.|+ |++|...+..+...|+ +|++++++.++.+.+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~ 46 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAA 46 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 4678999987 9999998888887898 899999988776544
No 243
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=91.58 E-value=0.59 Score=40.22 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=35.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
.++++||.|+ |.+|...+..+...|+ +|++++++.++.+.+.
T Consensus 5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~ 47 (257)
T PRK07067 5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAA 47 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence 3678999987 9999998888888899 8999999888766544
No 244
>PRK08177 short chain dehydrogenase; Provisional
Probab=91.52 E-value=0.6 Score=39.41 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=34.2
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496 204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF 246 (267)
Q Consensus 204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~ 246 (267)
++++|.|+ |.+|...+..+...|+ +|+++++++++.+.++++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~ 44 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQAL 44 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhc
Confidence 46899987 9999998888888899 999999988776655544
No 245
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=91.46 E-value=0.67 Score=38.75 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=39.9
Q ss_pred HHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHH
Q 024496 196 KVAGVEVGSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGK 244 (267)
Q Consensus 196 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~ 244 (267)
...++.++++||-+|+|. |..++.+++..+. .+|++++.+++.++.++
T Consensus 34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~ 82 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTR 82 (198)
T ss_pred HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 456789999999999987 8888899887643 48999999998888664
No 246
>PRK06181 short chain dehydrogenase; Provisional
Probab=91.40 E-value=0.61 Score=40.23 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=32.6
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
+.++||.|+ |.+|...++.+...|+ +|+++++++++.+.
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~ 40 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLAS 40 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 357999987 9999999988888898 89999998766543
No 247
>PRK06138 short chain dehydrogenase; Provisional
Probab=91.38 E-value=0.63 Score=39.71 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
++++++|.|+ |.+|...++.+...|+ +|++++++.++.+..
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~ 45 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERV 45 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHH
Confidence 4678999987 9999998887777898 899998887665443
No 248
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=91.37 E-value=0.58 Score=39.94 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=34.0
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
++++||.|+ |.+|...+..+...|+ +|+++++++++.+.+.
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~ 42 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAA 42 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 357999997 9999999888888899 8999999887665543
No 249
>PRK07774 short chain dehydrogenase; Provisional
Probab=91.33 E-value=0.68 Score=39.51 Aligned_cols=40 Identities=30% Similarity=0.347 Sum_probs=33.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
.+++++|.|+ |.+|...+..+...|+ +|+++++++++.+.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~ 45 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAER 45 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 5678999987 9999998888888898 89999988765543
No 250
>PRK06197 short chain dehydrogenase; Provisional
Probab=91.33 E-value=0.55 Score=41.79 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=33.7
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
..+++|+|.|+ |++|...+..+...|+ +|++++++.++.+.
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~ 55 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKA 55 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 36789999987 9999998888777898 89889888776543
No 251
>PRK08628 short chain dehydrogenase; Provisional
Probab=91.28 E-value=0.54 Score=40.42 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=33.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++||+|+ |.+|...+..+...|+ +|+++++++++.+..
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~ 47 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFA 47 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHH
Confidence 4678999987 8999998888888899 788888887765443
No 252
>PRK05876 short chain dehydrogenase; Provisional
Probab=91.28 E-value=0.64 Score=40.82 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=34.6
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
-+++++||.|+ |++|.+.+..+...|+ +|+++++++++++.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~ 46 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQA 46 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 35788999987 8999998888888899 888888887666543
No 253
>PRK08643 acetoin reductase; Validated
Probab=91.28 E-value=0.63 Score=39.95 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=33.1
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++|.|+ |.+|...++.+...|+ +|++++++.++.+.+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~ 42 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAA 42 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 568899987 8999999888888899 899999887665443
No 254
>PLN00203 glutamyl-tRNA reductase
Probab=91.27 E-value=0.68 Score=44.91 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=38.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
.+.+|+|+|+|.+|.+++..+...|+.+|+++.++.++.+.+.+
T Consensus 265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~ 308 (519)
T PLN00203 265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE 308 (519)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence 37899999999999999999999998889999999988776653
No 255
>PRK08264 short chain dehydrogenase; Validated
Probab=91.26 E-value=0.48 Score=40.14 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=33.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE 241 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~ 241 (267)
.+++++|+|+ |.+|...+..+...|+++|++++++.++.+
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~ 45 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVT 45 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhh
Confidence 4678999987 999999999888889878898988876654
No 256
>PRK05717 oxidoreductase; Validated
Probab=91.26 E-value=0.68 Score=39.84 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=32.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
++++++|.|+ |.+|...+..+...|+ +|++++++.++.+.
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~ 49 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSK 49 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence 4678999987 9999998888888898 89999877665444
No 257
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=91.21 E-value=0.62 Score=39.59 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=32.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE 241 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~ 241 (267)
.+.+|||.|+ |.+|...+..+...|+ +|++++++.++..
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~ 44 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAA 44 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 4678999987 9999998888888898 8999998865543
No 258
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=91.15 E-value=1.4 Score=41.34 Aligned_cols=54 Identities=26% Similarity=0.247 Sum_probs=44.8
Q ss_pred HHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCC
Q 024496 195 WKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFGI 248 (267)
Q Consensus 195 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G~ 248 (267)
.+..+--.+.++||+|+|-+|.+++..+...|..+|++.-|+.+|.+.+ +++|+
T Consensus 170 ~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~ 224 (414)
T COG0373 170 KRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA 224 (414)
T ss_pred HHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC
Confidence 3344445789999999999999999999999998999999999888765 56883
No 259
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=91.07 E-value=0.74 Score=39.19 Aligned_cols=41 Identities=27% Similarity=0.217 Sum_probs=34.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++||.|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~ 43 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKV 43 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence 4688999987 9999999988888898 899998887765543
No 260
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=91.05 E-value=0.74 Score=38.87 Aligned_cols=40 Identities=30% Similarity=0.321 Sum_probs=33.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
++++|||+|+ |.+|...+..+...|. +|+++++++++.+.
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~ 44 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEA 44 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHH
Confidence 3578999998 9999999988888899 79999998876544
No 261
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.99 E-value=0.62 Score=45.50 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=42.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi 252 (267)
++++|.|.|.+|...++.++..|. +++++|.++++.+.+++.|...+.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~ 465 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVL 465 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEE
Confidence 678999999999999999999998 999999999999999988865443
No 262
>PRK08267 short chain dehydrogenase; Provisional
Probab=90.98 E-value=0.67 Score=39.94 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=34.1
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
+++||.|+ |.+|...+..+...|+ +|++++++.++++.+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~ 42 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALA 42 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH
Confidence 47899987 9999999988888898 9999999888776654
No 263
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=90.95 E-value=0.64 Score=36.98 Aligned_cols=40 Identities=25% Similarity=0.174 Sum_probs=30.8
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC--hhhHHHH
Q 024496 204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN--PEKFEIG 243 (267)
Q Consensus 204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~--~~~~~~~ 243 (267)
++++|+|+ +++|...++.+...|..+|+.+.++ .++.+.+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l 43 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQEL 43 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccc
Confidence 46899987 8999998877777777788999988 4444433
No 264
>PRK08226 short chain dehydrogenase; Provisional
Probab=90.95 E-value=0.7 Score=39.86 Aligned_cols=41 Identities=29% Similarity=0.380 Sum_probs=33.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
++++++|+|+ |.+|...+..+...|+ +|++++++++..+..
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~ 46 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLA 46 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence 5688999987 8999999988888899 899998887544333
No 265
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=90.93 E-value=0.74 Score=40.15 Aligned_cols=40 Identities=35% Similarity=0.333 Sum_probs=33.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
++++++|.|+ |++|.+.+..+...|+ +|++++++.++.+.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~ 49 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEA 49 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 5788999987 8999999988888899 89999988765543
No 266
>PRK12742 oxidoreductase; Provisional
Probab=90.90 E-value=0.78 Score=38.76 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=34.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH-HHcCCC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFEIG-KKFGIT 249 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~~-~~~G~~ 249 (267)
++++|||.|+ |.+|...++.+...|+ +|+.+.+ ++++.+.+ .+++..
T Consensus 5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~ 54 (237)
T PRK12742 5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGAT 54 (237)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCe
Confidence 4789999987 9999999998888999 7777644 44444443 445543
No 267
>PRK07904 short chain dehydrogenase; Provisional
Probab=90.85 E-value=0.72 Score=39.93 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChhh
Q 024496 200 VEVGSTVAIFGL-GAVGLAVAEGARLNR-ASKIIGVDINPEK 239 (267)
Q Consensus 200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g-~~~vi~~~~~~~~ 239 (267)
+..+++|||.|+ |++|.+.++-+...| + +|+++++++++
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~ 45 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDP 45 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcch
Confidence 567789999987 899999887766664 6 99999888765
No 268
>PRK07024 short chain dehydrogenase; Provisional
Probab=90.83 E-value=0.79 Score=39.51 Aligned_cols=40 Identities=20% Similarity=0.103 Sum_probs=33.5
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+.+|+|.|+ |++|...+..+...|+ +|++++++.++++..
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~ 42 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAF 42 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 468999987 9999998888888899 899999988776554
No 269
>PRK06914 short chain dehydrogenase; Provisional
Probab=90.82 E-value=0.76 Score=40.07 Aligned_cols=41 Identities=22% Similarity=0.124 Sum_probs=33.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.++++||.|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 43 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENL 43 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence 3568999987 9999999988888899 899998887766544
No 270
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=90.66 E-value=0.78 Score=39.32 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=33.1
Q ss_pred EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
+++|.|+ |.+|.+.+..+...|+ +|+++++++++++.+.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELK 41 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence 6899987 9999999988888899 8999999887766553
No 271
>PRK08862 short chain dehydrogenase; Provisional
Probab=90.60 E-value=0.84 Score=38.98 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=34.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
++++++|.|+ +++|.+.+.-+...|+ +|+++++++++++.+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~ 45 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDT 45 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence 4688999987 7999998877777899 899999988876554
No 272
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=90.54 E-value=0.94 Score=37.00 Aligned_cols=47 Identities=28% Similarity=0.287 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh-hhHHHHHHcCCC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP-EKFEIGKKFGIT 249 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~-~~~~~~~~~G~~ 249 (267)
++++|.|+|-|.-|.+.++-+|..|. +|++-.+.. ...+.+++-|+.
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~-~V~Vglr~~s~s~~~A~~~Gf~ 50 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGV-NVIVGLREGSASWEKAKADGFE 50 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC--EEEEEE-TTCHHHHHHHHTT-E
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCC-CEEEEecCCCcCHHHHHHCCCe
Confidence 57899999999999999999999999 666554444 488888888875
No 273
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.51 E-value=0.77 Score=41.19 Aligned_cols=45 Identities=27% Similarity=0.503 Sum_probs=39.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCC
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGKKFGI 248 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~~G~ 248 (267)
.+|.|+|.|.+|.+.+..++..|. .+|+++++++++.+.+++.|.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~ 52 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL 52 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC
Confidence 679999999999998888887774 489999999999888888885
No 274
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=90.45 E-value=0.8 Score=39.40 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=31.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK 239 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~ 239 (267)
+++++||.|+ |++|.+.++.+...|+ +|+++++++..
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~ 44 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELV 44 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHH
Confidence 4678999987 8999998888888899 89999887543
No 275
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.42 E-value=0.75 Score=44.74 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
.+++++|+|+|++|.+++..+...|+ +|+++.++.++.+.+.
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la 419 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELA 419 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence 46789999999999999999989999 9999999888776654
No 276
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=90.42 E-value=0.87 Score=39.16 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=32.7
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
++++||.|+ |.+|...+..+...|+ +|+.++++.++.+.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~ 42 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANV 42 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 468999987 8999998888888898 899999887655443
No 277
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.33 E-value=0.96 Score=38.36 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=33.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
.+.+++|.|+ |.+|...+..+...|+ +|++++++.++.+.
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~ 46 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKA 46 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 4578999987 8999998888888899 89999998766544
No 278
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=90.30 E-value=0.93 Score=33.57 Aligned_cols=42 Identities=38% Similarity=0.608 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHHHHHH
Q 024496 202 VGSTVAIFGLGAVGLAVAEGAR-LNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~-~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
|+.+||-+|+|. |..+..+++ ..++ +|++++.+++-++.+++
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~ 43 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARE 43 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHH
Confidence 678999998754 566666777 4677 99999999998888764
No 279
>PLN02253 xanthoxin dehydrogenase
Probab=90.26 E-value=0.92 Score=39.58 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=32.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
.++++||.|+ |.+|.+.+..+...|+ +|++++++.++.+.
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~ 57 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQN 57 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 4678999987 8999998887777898 89999887665443
No 280
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.18 E-value=0.77 Score=43.60 Aligned_cols=47 Identities=43% Similarity=0.564 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
.+++|+|+|.|..|++++.+++.+|+ .|.+.|........+.+.|+.
T Consensus 8 ~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D~~~~~~~~l~~~g~~ 54 (460)
T PRK01390 8 AGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDNPASRAKAAAAGIT 54 (460)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCC-EEEEECCChhhHHHHHhcCcc
Confidence 46789999999999999999999999 999999775544445555654
No 281
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.16 E-value=0.22 Score=47.08 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=43.7
Q ss_pred HhCCCCCCEEE----EEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC-EEECCCC
Q 024496 197 VAGVEVGSTVA----IFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT-DFINPAT 256 (267)
Q Consensus 197 ~~~~~~g~~Vl----I~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~-~vi~~~~ 256 (267)
..++++|+++| |+|+ |++|.+++++++..|+ +|+++.+.+.+....+..+.+ .++|.+.
T Consensus 28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~ 92 (450)
T PRK08261 28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATG 92 (450)
T ss_pred ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCC
Confidence 45677888887 7765 9999999999999999 899887666544444445555 4666665
No 282
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=90.12 E-value=1.4 Score=37.48 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=30.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.++++||.|+ |.+|...+..+...|+ +|+++++++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~ 39 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSE 39 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCch
Confidence 5789999997 8999998888888899 899888765
No 283
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.09 E-value=1.9 Score=36.88 Aligned_cols=48 Identities=27% Similarity=0.300 Sum_probs=39.1
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh----------hhHHHHHHcC
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP----------EKFEIGKKFG 247 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~----------~~~~~~~~~G 247 (267)
--.|.+|+|.|-|.+|..+++++..+|+..|.++|.+. +.++..++.+
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~ 77 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALG 77 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhC
Confidence 34688999999999999999999999996666778777 6666665554
No 284
>PRK07074 short chain dehydrogenase; Provisional
Probab=90.07 E-value=1 Score=38.69 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=33.0
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++|.|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~ 42 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAF 42 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 468999987 8999998887777898 899999988776544
No 285
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=90.07 E-value=0.67 Score=42.94 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=38.8
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh--------------hhHHHHHHcCC-CEEEC
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP--------------EKFEIGKKFGI-TDFIN 253 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~--------------~~~~~~~~~G~-~~vi~ 253 (267)
..|+|+|+|++|++++.+++..|. +|.++++.+ ..++.++++|. +.+..
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~-~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~ 66 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGL-DVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEA 66 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhh
Confidence 468999999999999999999998 888888762 24566677887 55543
No 286
>PRK08589 short chain dehydrogenase; Validated
Probab=90.03 E-value=0.96 Score=39.46 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=30.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
+++++||.|+ +++|.+.+..+...|+ +|+++++++
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~ 40 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAE 40 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcH
Confidence 5789999987 8999998888888899 899998883
No 287
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=90.02 E-value=0.93 Score=39.04 Aligned_cols=34 Identities=21% Similarity=0.122 Sum_probs=29.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
.++++||.|+ +.+|.+.++.+...|+ +|++++++
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~ 48 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG 48 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5789999987 8999999988888899 88888776
No 288
>PRK06198 short chain dehydrogenase; Provisional
Probab=89.99 E-value=1.1 Score=38.46 Aligned_cols=41 Identities=24% Similarity=0.188 Sum_probs=34.0
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE 241 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~ 241 (267)
-.+++++|.|+ |.+|...++.+...|++.|++++++.++.+
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~ 45 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGE 45 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHH
Confidence 45788999997 899999999988899944999998876554
No 289
>PRK07102 short chain dehydrogenase; Provisional
Probab=89.99 E-value=0.93 Score=38.61 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=32.6
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
++++|.|+ |++|...+..+...|+ +|+++++++++.+..
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~ 41 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERL 41 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHH
Confidence 47899987 9999998888888898 899999988766543
No 290
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=89.94 E-value=0.76 Score=39.50 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=37.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH--HcCCC
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK--KFGIT 249 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~--~~G~~ 249 (267)
+++|+|+|.+|...++.+...|. .|++++.++++.+... +++..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~ 47 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTH 47 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcceE
Confidence 68899999999999999999999 9999999999987733 35544
No 291
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.92 E-value=1.1 Score=42.77 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=38.8
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH-HHHcCCCE
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI-GKKFGITD 250 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~-~~~~G~~~ 250 (267)
-.+++|+|+|.|..|++++.+++..|+ .|.+.|++..+... +.++|...
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~l~~~gi~~ 62 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNETARHKLIEVTGVAD 62 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCChHHHHHHHHhcCcEE
Confidence 345689999999999999999999999 99999987655433 35567643
No 292
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.90 E-value=0.83 Score=32.15 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=27.9
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
+|+|+|+|.+|+-.+..+..+|. +|..+.+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccc
Confidence 58899999999999999999998 888887655
No 293
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.90 E-value=1 Score=42.39 Aligned_cols=47 Identities=23% Similarity=0.158 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh----hHHHHHHcCCC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE----KFEIGKKFGIT 249 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~----~~~~~~~~G~~ 249 (267)
.+++++|+|.|.+|++++.++...|+ +|++.+.+.+ ..+.+.+.|..
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~~~~~~~l~~~g~~ 54 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSENPEAQELLEEGIK 54 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccchhHHHHHHhcCCE
Confidence 46789999998899999999999999 8999986542 22334555654
No 294
>PRK08251 short chain dehydrogenase; Provisional
Probab=89.88 E-value=1 Score=38.31 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=32.5
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++|.|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~ 42 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEEL 42 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 467999987 9999988877777888 899988888776544
No 295
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=89.79 E-value=1.1 Score=38.53 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=33.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+++|||.|+ +.+|...+..+...|+ ++++++++.++.+.+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~ 51 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHV 51 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 4789999987 8999998888888899 888888877665443
No 296
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.75 E-value=0.94 Score=44.93 Aligned_cols=48 Identities=29% Similarity=0.430 Sum_probs=42.8
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
.++|+|.|.|.+|+..++.++..|. +++++|.++++.+.+++.|...+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~ 447 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVF 447 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEE
Confidence 3579999999999999999999998 89999999999999999887533
No 297
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.74 E-value=1 Score=39.95 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=35.6
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~ 248 (267)
+|+|+|+|.+|.+.+..+...|. +|..+++++++.+.+++.|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~ 44 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGL 44 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCC
Confidence 68999999999988777777787 89999988888777776664
No 298
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.64 E-value=2.2 Score=36.28 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=48.8
Q ss_pred hhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH----HHHcCCCEE
Q 024496 178 GIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI----GKKFGITDF 251 (267)
Q Consensus 178 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~----~~~~G~~~v 251 (267)
.....+.-+...|. +.....++++++||=+|.| .|..++.+|+..+ +|+.+++.++-.+. ++++|.+.|
T Consensus 50 ~~gqtis~P~~vA~--m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV 122 (209)
T COG2518 50 GCGQTISAPHMVAR--MLQLLELKPGDRVLEIGTG-SGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENV 122 (209)
T ss_pred CCCceecCcHHHHH--HHHHhCCCCCCeEEEECCC-chHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCce
Confidence 33334444444443 4677899999999999874 4888999999876 89999998874444 456787433
No 299
>PRK07832 short chain dehydrogenase; Provisional
Probab=89.61 E-value=1 Score=39.16 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=31.5
Q ss_pred EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++|+|+ |++|...++.+...|+ +|+++++++++++..
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~ 40 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQT 40 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 6899987 8999999888888898 888898887765443
No 300
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.57 E-value=1 Score=40.07 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=33.9
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+|.|+|+|.+|...+..+...|. +|+++++++++++.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~ 42 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNA 42 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHH
Confidence 579999999999998888888898 899999999887643
No 301
>PRK06953 short chain dehydrogenase; Provisional
Probab=89.44 E-value=1.2 Score=37.50 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=35.2
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496 204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248 (267)
Q Consensus 204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~ 248 (267)
++++|+|+ |.+|...++.+...|+ +|+++++++++.+.++..+.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~ 46 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGA 46 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccc
Confidence 46889987 9999998887777898 89999998887776665553
No 302
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.40 E-value=0.86 Score=37.97 Aligned_cols=40 Identities=40% Similarity=0.617 Sum_probs=31.5
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
+|.|+|.|-+|+-.+..+-..|. +|+++|.++++.+.+.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNN 41 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHT
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhh
Confidence 68899999999888777777898 99999999999988754
No 303
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=89.26 E-value=1.2 Score=38.49 Aligned_cols=41 Identities=32% Similarity=0.370 Sum_probs=33.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+++++|.|+ +.+|...+..+...|+ +|+++++++++.+.+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~ 50 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKG 50 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 5678999987 8999988887778899 788888888766543
No 304
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.24 E-value=1 Score=39.46 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=30.0
Q ss_pred CCCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 202 VGSTVAIFGLG---AVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 202 ~g~~VlI~G~g---~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
+++++||.|++ ++|.+.++.+...|+ +|++++++++
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~ 44 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEA 44 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchH
Confidence 57889999974 899998888888999 8888887653
No 305
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=89.19 E-value=1.8 Score=32.45 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=38.5
Q ss_pred HHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 195 WKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 195 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
.....+.++++|+-+|+|. |..+..+++..+..+|+++|.++...+.++
T Consensus 12 ~~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~ 60 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIE 60 (124)
T ss_pred HHHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence 3445677788999999866 788888888765459999999998887764
No 306
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.12 E-value=1.1 Score=39.86 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=34.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
++|.|+|+|.+|...++.+...|. +|++.++++++++.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~ 41 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQ 41 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Confidence 479999999999998888877898 8999999998877753
No 307
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=89.12 E-value=0.8 Score=40.62 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=34.1
Q ss_pred HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
+.+.+++++|++||-+|+| -|-.+..+|+..|+ +|.+++.+++..+.++
T Consensus 54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~ 102 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYAR 102 (273)
T ss_dssp HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHH
Confidence 5678899999999999986 45566678887799 9999999998887764
No 308
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=89.10 E-value=1.1 Score=38.58 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=31.6
Q ss_pred EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
++||.|+ +++|.+.+..+...|+ +|+++++++++++.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~ 40 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKA 40 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 6899987 8999998888888899 899999988765443
No 309
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.01 E-value=1.1 Score=44.29 Aligned_cols=47 Identities=19% Similarity=0.370 Sum_probs=42.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
++|+|.|.|.+|+..++.++..|. .++++|.++++.+.+++.|...+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~ 447 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVY 447 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEE
Confidence 578999999999999999998899 99999999999999999886543
No 310
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.97 E-value=1.1 Score=38.79 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=30.0
Q ss_pred CCCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496 202 VGSTVAIFGLG---AVGLAVAEGARLNRASKIIGVDINPEK 239 (267)
Q Consensus 202 ~g~~VlI~G~g---~vG~~a~~la~~~g~~~vi~~~~~~~~ 239 (267)
+++++||.|++ ++|.+.++.+...|+ +|++++++++.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~ 48 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKA 48 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhh
Confidence 57889999863 899998888888899 88888887543
No 311
>PRK06482 short chain dehydrogenase; Provisional
Probab=88.89 E-value=1.3 Score=38.51 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=33.2
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
+++||.|+ |.+|...+..+...|. +|+++.+++++++.++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~ 43 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLK 43 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 57999987 9999998888877898 8999999887766554
No 312
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=88.83 E-value=2.6 Score=39.40 Aligned_cols=58 Identities=28% Similarity=0.209 Sum_probs=41.6
Q ss_pred hhhhhcchhhhhHHHHHHHHhCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 178 GIACLLSCGVSTGVGAAWKVAGV-EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 178 ~~aa~l~~~~~ta~~a~~~~~~~-~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
.+|....+.+++- .+....+. -+|.+|.|.|.|.+|..+++.+..+|+ +|++++-+..
T Consensus 183 ~~aTg~Gv~~~~~--~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g 241 (411)
T COG0334 183 SEATGYGVFYAIR--EALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG 241 (411)
T ss_pred CcccceehHHHHH--HHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence 3444445444333 23444554 599999999999999999999998899 7777765554
No 313
>CHL00194 ycf39 Ycf39; Provisional
Probab=88.79 E-value=1.3 Score=39.70 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=31.5
Q ss_pred EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+|+|+|+ |.+|...+..+...|. +|.+++|+.++...+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l 40 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFL 40 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhH
Confidence 6999997 9999999988888898 899998886654433
No 314
>PRK08263 short chain dehydrogenase; Provisional
Probab=88.78 E-value=1.3 Score=38.52 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=33.7
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
+++|||.|+ |.+|...+..+...|+ +|+++++++++++.+.
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~ 44 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLA 44 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence 468999987 9999998888877898 8999999887765544
No 315
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=88.71 E-value=2.7 Score=35.07 Aligned_cols=61 Identities=18% Similarity=0.320 Sum_probs=43.3
Q ss_pred HHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCC--EEECCCC
Q 024496 195 WKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK----KFGIT--DFINPAT 256 (267)
Q Consensus 195 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~----~~G~~--~vi~~~~ 256 (267)
+....+++|+.++=+|+|. |..++++++..-..+||+++++++++++.+ +||.+ +++..+.
T Consensus 27 ls~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A 93 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA 93 (187)
T ss_pred HHhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc
Confidence 3456789999877777742 555668886555559999999999998875 58876 4444444
No 316
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=88.65 E-value=1.5 Score=37.05 Aligned_cols=41 Identities=22% Similarity=0.179 Sum_probs=33.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
++.++||.|+ |.+|...+..+...|+ .|+..+++.++++.+
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~ 46 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEAL 46 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence 4679999987 9999998888888898 888888877766554
No 317
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=88.64 E-value=1.4 Score=39.06 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=36.2
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
-.|+.+||.|+ .++|.+.+..+-..|+ +|+++++++++.+..+
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~ 49 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETA 49 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 46788899987 7999998888888999 9999999998876653
No 318
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.59 E-value=1.5 Score=35.31 Aligned_cols=41 Identities=22% Similarity=0.172 Sum_probs=36.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF 246 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~ 246 (267)
+|.|+|+|..|.+.+..+...|. +|....++++..+.+++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~ 41 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINET 41 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHh
Confidence 58899999999999999999997 999999999888877653
No 319
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=88.57 E-value=2.2 Score=40.63 Aligned_cols=36 Identities=28% Similarity=0.224 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEE-EEcCC
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKII-GVDIN 236 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi-~~~~~ 236 (267)
--+|.+|+|.|.|.||..+++.+..+|+ +|+ +.|.+
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~Ga-kVVavSD~~ 270 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGA-KVLTMSDSD 270 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEcCC
Confidence 3478999999999999999999999999 777 56666
No 320
>PRK06484 short chain dehydrogenase; Validated
Probab=88.54 E-value=1.3 Score=42.45 Aligned_cols=47 Identities=26% Similarity=0.243 Sum_probs=38.3
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCC
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGI 248 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~ 248 (267)
..++++||.|+ +++|.+.++.+...|+ +|+++++++++++.+.+ ++.
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~ 315 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGD 315 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence 35788999987 8999998888888899 99999998887776653 443
No 321
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=88.51 E-value=1.4 Score=44.07 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
..+++|+|+|+|+.|+.++..+..+|. +|++++.++
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~ 226 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE 226 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 357899999999999999999999999 788887654
No 322
>PRK07856 short chain dehydrogenase; Provisional
Probab=88.50 E-value=1 Score=38.61 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=31.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK 239 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~ 239 (267)
.+++++|.|+ |++|...++.+...|+ +|++++++.++
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~ 42 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE 42 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh
Confidence 5789999987 8999998888888898 88888887643
No 323
>PRK13984 putative oxidoreductase; Provisional
Probab=88.49 E-value=1.5 Score=43.19 Aligned_cols=36 Identities=22% Similarity=0.137 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
.+.+++|+|+|+|+.|++++..++.+|. +|.++++.
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~ 315 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESL 315 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 4578899999999999999999999999 78888654
No 324
>PRK05884 short chain dehydrogenase; Provisional
Probab=88.38 E-value=1.4 Score=37.42 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=32.0
Q ss_pred EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++|.|+ |.+|.+.++.+...|+ +|+++++++++++.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~ 40 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVA 40 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 5889987 8999998888888898 899999888776654
No 325
>PRK06940 short chain dehydrogenase; Provisional
Probab=88.37 E-value=1.4 Score=38.64 Aligned_cols=39 Identities=28% Similarity=0.461 Sum_probs=30.6
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
++.++|.|+|++|.+.+..+. .|+ +|+++++++++++.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~ 40 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAA 40 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHH
Confidence 356788898999999888774 788 899999987766543
No 326
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.24 E-value=1.4 Score=38.93 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=37.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~ 248 (267)
+|.|+|.|.+|...+..++..|. +|+++++++++.+.+.+.|.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~ 44 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGL 44 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC
Confidence 68899999999888887777787 89999999999988887774
No 327
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=88.17 E-value=0.8 Score=40.83 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=27.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
.|+|+|+|+.|++++.++...|. +|.++++.+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~-~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGI-DVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhccc-ccccchhccc
Confidence 58999999999999999999999 8999987653
No 328
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.16 E-value=1.5 Score=39.00 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=33.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
.+|.|+|+|.+|...+..+...|. +|++.++++++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAK 43 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHH
Confidence 479999999999988888777788 8999999988766553
No 329
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.09 E-value=1.6 Score=36.84 Aligned_cols=40 Identities=33% Similarity=0.375 Sum_probs=31.7
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChhhHHHH
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGV-DINPEKFEIG 243 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~-~~~~~~~~~~ 243 (267)
++++||.|+ |.+|...+..+...|+ +|+++ +++.++.+.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~ 46 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQEL 46 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence 468999987 9999998887777898 78887 8877665443
No 330
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=88.08 E-value=3.3 Score=37.27 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=46.3
Q ss_pred HHHhCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEE--cCChhhHHHHHHcCCCEEECCCC
Q 024496 195 WKVAGVEVGSTVAIFG-LGAVGLAVAEGARLNRASKIIGV--DINPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 195 ~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~~vi~~--~~~~~~~~~~~~~G~~~vi~~~~ 256 (267)
.....+++|++| |=+ +|..|.+.+.+++.+|++-+++. .-+.+|+++++.+|+.-++.+..
T Consensus 54 e~~G~l~pG~tI-VE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~ 117 (300)
T COG0031 54 EKRGLLKPGGTI-VEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGA 117 (300)
T ss_pred HHcCCCCCCCEE-EEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCC
Confidence 445669999953 445 58999999999999999544444 34568999999999998877664
No 331
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.08 E-value=1.5 Score=37.85 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=33.1
Q ss_pred CCCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496 202 VGSTVAIFGLG---AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF 246 (267)
Q Consensus 202 ~g~~VlI~G~g---~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~ 246 (267)
.+++++|.|++ ++|.+.++.+...|+ +|++++++++..+.++++
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~ 52 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKL 52 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhh
Confidence 57889999874 899998888878899 899888875434444443
No 332
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=88.05 E-value=3.2 Score=29.93 Aligned_cols=44 Identities=27% Similarity=0.442 Sum_probs=35.0
Q ss_pred EEEEEcCCHHHHHHHHHHHHcC---CCeEE-EEcCChhhHHHHH-HcCCC
Q 024496 205 TVAIFGLGAVGLAVAEGARLNR---ASKII-GVDINPEKFEIGK-KFGIT 249 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g---~~~vi-~~~~~~~~~~~~~-~~G~~ 249 (267)
+|.|+|.|.+|.+.+.-+...| . +|+ ++.+++++.+.++ +++..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~ 49 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQ 49 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhccc
Confidence 5788899999999888888888 5 777 4499999988874 56644
No 333
>PRK07806 short chain dehydrogenase; Provisional
Probab=88.00 E-value=1.5 Score=37.26 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=29.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
+++++||.|+ |.+|...+..+...|+ +|+++.++.
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~ 40 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQK 40 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 4678999997 9999999888888898 888887764
No 334
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=87.93 E-value=1.4 Score=37.93 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=32.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
...+|||+|+ |.+|...+..+...|. +|+++.|+.++...
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~ 56 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKT 56 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHH
Confidence 4578999997 9999999888887888 88888887766543
No 335
>PRK07775 short chain dehydrogenase; Provisional
Probab=87.91 E-value=1.7 Score=37.88 Aligned_cols=40 Identities=18% Similarity=0.018 Sum_probs=32.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
+..+++|.|+ |.+|...+..+...|+ +|++++++.++.+.
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~ 49 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEE 49 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 4468999987 9999999988888899 88888887765543
No 336
>PRK06523 short chain dehydrogenase; Provisional
Probab=87.87 E-value=1.1 Score=38.60 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=30.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
+++++||.|+ |++|...++.+...|+ +|++++++.
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~ 43 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR 43 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence 5789999987 8999998888888899 888888764
No 337
>PRK06720 hypothetical protein; Provisional
Probab=87.81 E-value=2.1 Score=35.04 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=31.9
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE 241 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~ 241 (267)
.++.++|.|+ +++|...+..+...|+ +|++++++.+..+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~ 54 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ 54 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 5778999987 7899998887777898 8999998876553
No 338
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=87.78 E-value=1.6 Score=39.59 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=33.2
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496 200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE 241 (267)
Q Consensus 200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~ 241 (267)
-..+.+|||.|+ |.+|...++.+...|. +|++++++.++.+
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~ 48 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLRDPAKSL 48 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChHHHH
Confidence 356779999987 9999999998888898 8888877765443
No 339
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=87.67 E-value=1.2 Score=38.95 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=33.6
Q ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 199 GVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
...+-.+++|+|+|.++...+++|+.+|+ +|.++|..++
T Consensus 96 ~~~p~~~L~IfGaG~va~~la~la~~lGf-~V~v~D~R~~ 134 (246)
T TIGR02964 96 EAPPAPHVVLFGAGHVGRALVRALAPLPC-RVTWVDSREA 134 (246)
T ss_pred ccCCCCEEEEECCcHHHHHHHHHHhcCCC-EEEEEeCCcc
Confidence 35677899999999999999999999999 8888875543
No 340
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=87.62 E-value=0.69 Score=34.55 Aligned_cols=35 Identities=23% Similarity=0.142 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.+.+|||+|+|.+|..-++.+...|+ +|.++..+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence 57899999999999999999999998 888888664
No 341
>PRK08303 short chain dehydrogenase; Provisional
Probab=87.60 E-value=1.5 Score=39.21 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=29.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
.+++++|.|+ +++|.+.++.+...|+ +|++++++
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 5789999987 8999999988888999 88888876
No 342
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=87.57 E-value=1.9 Score=37.26 Aligned_cols=40 Identities=23% Similarity=0.128 Sum_probs=30.8
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhHH
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD-INPEKFE 241 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~-~~~~~~~ 241 (267)
-+++++||.|+ +++|.+.+..+...|+ +|+.+. +++++.+
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~ 47 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEAN 47 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHH
Confidence 35789999987 8999998888888999 777764 4454443
No 343
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=87.56 E-value=0.87 Score=42.83 Aligned_cols=48 Identities=27% Similarity=0.225 Sum_probs=31.3
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc--CCCEEEC
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF--GITDFIN 253 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~--G~~~vi~ 253 (267)
.|+|+|+|+.|++++..|...|+ +|++++++++--+.+.-. |-.-+-|
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~-~V~vlE~~~~~gkKil~tG~GrCN~tn 51 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGA-RVLVLERNKRVGKKILITGNGRCNLTN 51 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSS-HHHHHCGGGT-EEEE
T ss_pred cEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCcccccceeecCCCCccccc
Confidence 37899999999999999988999 999999987655555443 3344444
No 344
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=87.54 E-value=2.2 Score=40.75 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
..+.+|+|+|+|+.|+.++..+...|. +|+++++.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 457899999999999999999999999 78888754
No 345
>PRK06398 aldose dehydrogenase; Validated
Probab=87.54 E-value=1.1 Score=38.70 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=29.6
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.++++||.|+ +++|.+.+..+...|+ +|+++++++
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~ 40 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKE 40 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCc
Confidence 4689999987 8999999988888898 888877654
No 346
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=87.42 E-value=2 Score=34.68 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=37.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
.+|.++|.|.+|...+.-+...|+ +|.+.++++++.+.+.+.|+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~ 46 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAE 46 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhh
Confidence 368899999999988888888899 999999999999998887754
No 347
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=87.35 E-value=1.6 Score=41.02 Aligned_cols=39 Identities=31% Similarity=0.495 Sum_probs=32.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE 241 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~ 241 (267)
.+++++|.|+ |++|.+.+..+...|+ +|+++++++++++
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~ 216 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKIT 216 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 4789999987 9999998888888899 8998888776654
No 348
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.33 E-value=4 Score=36.42 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=42.3
Q ss_pred HHHhC-CCCCCEEEEEcCCH-HHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496 195 WKVAG-VEVGSTVAIFGLGA-VGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA 255 (267)
Q Consensus 195 ~~~~~-~~~g~~VlI~G~g~-vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~ 255 (267)
++..+ --.|++|+|+|.|. +|...+.++...|+ +|.++.+....+.... ..+|-+|+..
T Consensus 150 L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~~L~~~~-~~aDIvI~At 210 (283)
T PRK14192 150 LKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQNLPELV-KQADIIVGAV 210 (283)
T ss_pred HHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCchhHHHHh-ccCCEEEEcc
Confidence 33444 46789999999976 99999999999999 8888876433222211 3678777765
No 349
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=87.33 E-value=2.7 Score=36.16 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=29.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
+++++||.|+ +++|.+.++.+...|+ +|++++++.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~ 42 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAE 42 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCch
Confidence 5789999987 8999999988888999 888887654
No 350
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=87.29 E-value=1.7 Score=39.59 Aligned_cols=48 Identities=29% Similarity=0.372 Sum_probs=39.0
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~ 248 (267)
.-.|++|.|+|-|.+|.+.++.++..|. +|++.++.....+.+.+.|+
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~ 60 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGF 60 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCC
Confidence 4578999999999999999999999999 88777665555556666666
No 351
>PRK06484 short chain dehydrogenase; Validated
Probab=87.29 E-value=1.6 Score=41.91 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=36.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG 247 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G 247 (267)
.++++||.|+ +++|.+.++.+...|+ +|++++++.++++.+. ++|
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~ 50 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLG 50 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC
Confidence 5788999987 8999999998888999 9999998888765543 454
No 352
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.22 E-value=1.7 Score=37.73 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=28.7
Q ss_pred CCCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 201 EVGSTVAIFGL-G--AVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 201 ~~g~~VlI~G~-g--~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
-.++.++|.|+ + ++|.+.++.+...|+ +|+.+++++
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~ 44 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSE 44 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCch
Confidence 35788999987 4 799998877777899 888888764
No 353
>PRK12367 short chain dehydrogenase; Provisional
Probab=87.19 E-value=2 Score=37.20 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=30.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.+++++|.|+ |++|.+.++.+...|+ +|+++++++
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~ 48 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK 48 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence 3678999987 8999998888888899 898888775
No 354
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=87.14 E-value=3.3 Score=29.61 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI 235 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~ 235 (267)
-++++++|+|.|.+|...++.+...+..++.+.++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46789999999999999999999886658888876
No 355
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=87.14 E-value=5.3 Score=35.97 Aligned_cols=46 Identities=33% Similarity=0.530 Sum_probs=34.2
Q ss_pred hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 198 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
.-++++++||=+|.| .|.+++..++ +|+.+|+++|..+-..+.+++
T Consensus 158 ~~~~~g~~vlDvGcG-SGILaIAa~k-LGA~~v~g~DiDp~AV~aa~e 203 (300)
T COG2264 158 KLLKKGKTVLDVGCG-SGILAIAAAK-LGAKKVVGVDIDPQAVEAARE 203 (300)
T ss_pred HhhcCCCEEEEecCC-hhHHHHHHHH-cCCceEEEecCCHHHHHHHHH
Confidence 346688898877764 3666666666 699899999999977766654
No 356
>PRK07791 short chain dehydrogenase; Provisional
Probab=87.13 E-value=2.1 Score=37.80 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=30.0
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
..+++++||.|+ +++|.+.++.+...|+ +|++++++.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~ 40 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGV 40 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCc
Confidence 346789999987 8999998888777899 888877654
No 357
>PRK07574 formate dehydrogenase; Provisional
Probab=87.13 E-value=1.6 Score=40.66 Aligned_cols=45 Identities=31% Similarity=0.380 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G 247 (267)
.|++|.|+|.|.+|...++.++.+|. +|++.+++....+..+++|
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g 235 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELG 235 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcC
Confidence 56899999999999999999999999 9999998763333333444
No 358
>PRK06179 short chain dehydrogenase; Provisional
Probab=87.11 E-value=1.3 Score=38.40 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=31.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKF 240 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~ 240 (267)
.+++++|.|+ |.+|...+..+...|+ +|++++++.++.
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~ 41 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARA 41 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhc
Confidence 3568999987 9999998888888898 899998876544
No 359
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=87.08 E-value=0.63 Score=36.84 Aligned_cols=32 Identities=41% Similarity=0.488 Sum_probs=26.5
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 206 VAIFGLGAVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
++|+|+|.++.+.+++++.+|+ +|.+++..++
T Consensus 1 L~I~GaG~va~al~~la~~lg~-~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGF-RVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTE-EEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCC-EEEEEcCCcc
Confidence 4678999999999999999999 8888876655
No 360
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.04 E-value=1.8 Score=36.79 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=30.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEE-EcCChhhHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIG-VDINPEKFE 241 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~-~~~~~~~~~ 241 (267)
++++++|.|+ |.+|...+..+...|+ +|++ ..++.++.+
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~ 43 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAE 43 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHH
Confidence 4678999987 8999999988888898 6655 466665543
No 361
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=87.03 E-value=1.6 Score=38.77 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=33.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~ 248 (267)
+|+|+|+|.+|.+.+..+...|. +|..+++ +++.+.+++.|.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g~ 43 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERGL 43 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCCe
Confidence 68999999999987777766787 8888888 777777776553
No 362
>PRK06753 hypothetical protein; Provisional
Probab=87.00 E-value=0.98 Score=41.23 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=27.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
+|+|+|+|+.|++++..++..|. +|.++++.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGH-EVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 68999999999999988888899 788887654
No 363
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=86.97 E-value=1.7 Score=41.31 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=38.6
Q ss_pred CCCCCCEEEEEcCCHHHHH-HHHHHHHcCCCeEEEEcCChh-hHHHHHHcCCC
Q 024496 199 GVEVGSTVAIFGLGAVGLA-VAEGARLNRASKIIGVDINPE-KFEIGKKFGIT 249 (267)
Q Consensus 199 ~~~~g~~VlI~G~g~vG~~-a~~la~~~g~~~vi~~~~~~~-~~~~~~~~G~~ 249 (267)
+..++++|+|+|.|..|++ ++.+++..|+ +|.+.|.... ..+.+++.|..
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~~~~~~l~~~gi~ 54 (461)
T PRK00421 3 ELRRIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKESAVTQRLLELGAI 54 (461)
T ss_pred CcCCCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCChHHHHHHHCCCE
Confidence 4566789999999999999 5999999999 9999996543 23335555654
No 364
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=86.89 E-value=2.1 Score=41.11 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=30.0
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
..+++|+|+|+|+.|+.++..++..|. +|.+++..
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~ 175 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERE 175 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecC
Confidence 356899999999999999999999998 78877644
No 365
>PLN02686 cinnamoyl-CoA reductase
Probab=86.88 E-value=1.8 Score=39.78 Aligned_cols=45 Identities=16% Similarity=0.026 Sum_probs=34.9
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
...+++|||.|+ |.+|...+..+...|+ +|+++.++.++.+.+++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~~~~l~~ 95 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQEDKEKLRE 95 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 455789999987 9999999998888899 88877666655544433
No 366
>PLN03139 formate dehydrogenase; Provisional
Probab=86.81 E-value=1.6 Score=40.78 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~ 248 (267)
.|++|.|+|.|.+|...++.++.+|. +|++.+++....+...+.|+
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~ 243 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGA 243 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCc
Confidence 67899999999999999999999999 89999887544444444453
No 367
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=86.76 E-value=1.6 Score=38.98 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=30.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK 239 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~ 239 (267)
.|++|||.|+ |.+|...+..+...|. +|+++.++.++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~ 41 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGY-TVKATVRDLTD 41 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCCcc
Confidence 4789999987 9999998888888898 88877766554
No 368
>PRK05650 short chain dehydrogenase; Provisional
Probab=86.74 E-value=1.9 Score=37.34 Aligned_cols=37 Identities=27% Similarity=0.187 Sum_probs=30.8
Q ss_pred EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
+|+|.|+ |.+|...+..+...|+ +|++++++.++.+.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~ 39 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEE 39 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 6899987 9999998888877899 89998888776553
No 369
>PRK06114 short chain dehydrogenase; Provisional
Probab=86.72 E-value=2.9 Score=35.87 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=30.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
+++++||.|+ +++|.+.++.+...|+ +|++++++.
T Consensus 7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~ 42 (254)
T PRK06114 7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRT 42 (254)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 5778999987 8999999998888999 888888764
No 370
>PRK09135 pteridine reductase; Provisional
Probab=86.65 E-value=2.4 Score=35.90 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=29.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
.++++||.|+ |.+|...+..+...|+ +|+++++.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~ 39 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHR 39 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4578999997 9999998888888899 88888875
No 371
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=86.60 E-value=1.4 Score=40.75 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=27.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.|+|+|+|++|++++..+...|. +|.++++.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGL-EVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 58999999999998877777898 899888654
No 372
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=86.60 E-value=1.4 Score=38.11 Aligned_cols=44 Identities=25% Similarity=0.291 Sum_probs=38.3
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
..+=..|.|+|+|..|...+|++...|. .|..++.+++.+..++
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~-~V~l~d~~~~aL~~A~ 51 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGL-NVWLVDANEDALSRAT 51 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCC-ceEEecCCHHHHHHHH
Confidence 3444679999999999999999999999 9999999998887764
No 373
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=86.58 E-value=3.5 Score=39.58 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
.+.+++|+|+|++|.+++..+...|+ ++++++++.++.+.+.
T Consensus 331 ~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~~la 372 (477)
T PRK09310 331 NNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAEALA 372 (477)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 56789999999999999998888999 8999999888776553
No 374
>PLN02928 oxidoreductase family protein
Probab=86.52 E-value=1.4 Score=40.40 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
-.|++|.|+|.|.+|...++.++.+|. +|++++++.
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~ 192 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW 192 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC
Confidence 357899999999999999999999999 999998763
No 375
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.49 E-value=2.1 Score=38.96 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=33.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
++|.|+|+|.+|...++.+...|. +|.+.+++++.++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~ 45 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAA 45 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHH
Confidence 579999999999998888888899 99999998876554
No 376
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.43 E-value=2 Score=40.40 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=38.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCC
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGIT 249 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~ 249 (267)
+|+|+|+|.+|...++.+...|. .|+++++++++.+.+++ +|..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~~~~~ 46 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDRLDVR 46 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcCEE
Confidence 68999999999999999998898 89999999998888765 6644
No 377
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=86.38 E-value=3.6 Score=34.84 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.|++|||+|+|.+|..-+..+...|+ +|.+++.+.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCC
Confidence 47899999999999999999999999 888886543
No 378
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=86.33 E-value=1.9 Score=34.94 Aligned_cols=44 Identities=25% Similarity=0.232 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G 247 (267)
-.|.+|+|+|+|.+|.--++.+...|+ +|.+++ ++..+.+++++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~ 54 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELP 54 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhcc
Confidence 367899999999999988888877899 777774 33334444444
No 379
>PRK06847 hypothetical protein; Provisional
Probab=86.32 E-value=1.2 Score=40.71 Aligned_cols=34 Identities=32% Similarity=0.330 Sum_probs=29.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
..+|+|+|+|+.|++++..++..|. +|.++++.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~-~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGI-AVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 4579999999999999999988899 888887654
No 380
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=86.31 E-value=2.2 Score=38.27 Aligned_cols=40 Identities=25% Similarity=0.145 Sum_probs=32.7
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChhhHHHH
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNR-ASKIIGVDINPEKFEIG 243 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g-~~~vi~~~~~~~~~~~~ 243 (267)
+++++|.|+ +++|.+.+..+...| + +|+++++++++.+.+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~-~V~l~~r~~~~~~~~ 44 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW-HVIMACRDFLKAEQA 44 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHH
Confidence 568999988 899999888777789 6 899999888776544
No 381
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.31 E-value=2.5 Score=40.18 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=37.4
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh-----hHHHHHHcCCC
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE-----KFEIGKKFGIT 249 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~-----~~~~~~~~G~~ 249 (267)
..+++|+|+|.|..|++++.+++..|+ .|.+.|.++. ..+.+++.|..
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~~~~~l~~~gi~ 64 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEELGEVSNELKELGVK 64 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCccchHHHHHHHhCCCE
Confidence 346799999999999999999999999 9999997642 12335556654
No 382
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.31 E-value=2.2 Score=37.94 Aligned_cols=39 Identities=23% Similarity=0.465 Sum_probs=33.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+|.|+|+|.+|...+..+...|. +|++.++++++++.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~ 43 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAG 43 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 579999999999988888887888 999999998877664
No 383
>PRK14967 putative methyltransferase; Provisional
Probab=86.29 E-value=2.9 Score=35.56 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=37.7
Q ss_pred HHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 196 KVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 196 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
....++++++||-+|+|. |..++.+++. ++.+|++++.+++.++.+++
T Consensus 30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~ 77 (223)
T PRK14967 30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARL 77 (223)
T ss_pred HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence 345678899999999986 8888888875 55699999999988876543
No 384
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=86.23 E-value=2.6 Score=37.91 Aligned_cols=44 Identities=30% Similarity=0.499 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
..+|++||=+|.| .|.+++..++ +|+++|+++|.++...+.+++
T Consensus 159 ~~~g~~vLDvG~G-SGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~ 202 (295)
T PF06325_consen 159 VKPGKRVLDVGCG-SGILAIAAAK-LGAKKVVAIDIDPLAVEAARE 202 (295)
T ss_dssp SSTTSEEEEES-T-TSHHHHHHHH-TTBSEEEEEESSCHHHHHHHH
T ss_pred ccCCCEEEEeCCc-HHHHHHHHHH-cCCCeEEEecCCHHHHHHHHH
Confidence 7788898877753 2444444455 599899999999987777654
No 385
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.23 E-value=2.1 Score=38.27 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=34.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
.+|.|+|+|.+|...+..+...|. +|+++++++++++.+++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~ 45 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARG 45 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHH
Confidence 579999999999988887777888 89999999888776543
No 386
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=86.11 E-value=2.5 Score=37.93 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=32.9
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
.+|+|+|+|++|...+..+...|. .|..+++..++++.+++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~ 43 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ 43 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh
Confidence 469999999999876666666787 88889988777777764
No 387
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=86.09 E-value=2.4 Score=36.20 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=30.8
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
++++|.|+ |.+|...+..+...|+ +|+.++++.++.+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~ 39 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAKE 39 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 36899987 9999998888888899 89888887765543
No 388
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.03 E-value=2.2 Score=37.37 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=29.9
Q ss_pred CCCCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 200 VEVGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 200 ~~~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.-.++++||.|+ +++|.+.+..+...|+ +|+++.+++
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~ 46 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGD 46 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCch
Confidence 446789999986 5899998888888999 888887663
No 389
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=86.00 E-value=1.7 Score=39.45 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=31.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK 239 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~ 239 (267)
++++|||.|+ |.+|...+..+...|. +|+++++....
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~ 40 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPT 40 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCcc
Confidence 4689999987 9999999998888898 88888876643
No 390
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=85.83 E-value=1.5 Score=30.07 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=24.9
Q ss_pred EEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 208 IFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 208 I~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
|+|+|..|++++..++..|. +|.+++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecCc
Confidence 67999999999999998899 999998765
No 391
>PLN02583 cinnamoyl-CoA reductase
Probab=85.79 E-value=2.1 Score=37.95 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=29.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
++++|||.|+ |.+|...+..+...|. +|+++.++
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~-~V~~~~R~ 39 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGY-TVHAAVQK 39 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEEcC
Confidence 4578999997 9999999998888999 88888774
No 392
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=85.78 E-value=2.7 Score=36.18 Aligned_cols=35 Identities=26% Similarity=0.170 Sum_probs=28.8
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
-++++++|.|+ |.+|...++.+...|+ +++++.++
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~ 40 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRS 40 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35789999987 8999999998888998 77766653
No 393
>PRK07577 short chain dehydrogenase; Provisional
Probab=85.74 E-value=1.6 Score=36.76 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=29.3
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.+++++|.|+ |.+|...+..+...|. +|++++++.
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~ 37 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSA 37 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 3578999987 9999998888888898 888887754
No 394
>PRK06483 dihydromonapterin reductase; Provisional
Probab=85.73 E-value=2.4 Score=35.84 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=30.0
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK 239 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~ 239 (267)
++++||.|+ +++|...++.+...|+ +|++++++++.
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~ 38 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYP 38 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchh
Confidence 467999987 8999999988888899 88888887643
No 395
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.69 E-value=2.2 Score=37.48 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=29.3
Q ss_pred CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.++++||.|+ +++|.+.++.+...|+ +|+++++++
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~ 41 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNE 41 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCH
Confidence 4788999986 4899998888888899 888888875
No 396
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.69 E-value=2.2 Score=38.26 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=33.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+|.|+|+|.+|...+..+...|. +|++.++++++.+.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~~~~~~~ 41 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADPAAAAAA 41 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCHHHHHHH
Confidence 369999999999988888888898 999999998776653
No 397
>PRK08163 salicylate hydroxylase; Provisional
Probab=85.63 E-value=1.3 Score=40.74 Aligned_cols=34 Identities=26% Similarity=0.196 Sum_probs=29.2
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
..+|+|+|+|+.|++++..++..|. +|.++++.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~-~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGI-KVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC-cEEEEeeCc
Confidence 3579999999999999988888999 888887654
No 398
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=85.57 E-value=2.2 Score=38.34 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=41.6
Q ss_pred CCCCEEEEEcC-CHHHHH-HHHHHHHcCCCeEEEEcCChhhHHHHHH-----cCC---CEEECCCC
Q 024496 201 EVGSTVAIFGL-GAVGLA-VAEGARLNRASKIIGVDINPEKFEIGKK-----FGI---TDFINPAT 256 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~-a~~la~~~g~~~vi~~~~~~~~~~~~~~-----~G~---~~vi~~~~ 256 (267)
+-|+|..|.|+ .++|.+ |-++|+ .|. +|+.+.|+++|++..++ .++ ..++|+.+
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~ 110 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTK 110 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCC
Confidence 45789999998 699977 666777 899 89999999999988742 342 34577766
No 399
>PRK14982 acyl-ACP reductase; Provisional
Probab=85.51 E-value=2.5 Score=38.78 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=36.1
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCChhhHHHHH
Q 024496 200 VEVGSTVAIFGL-GAVGLAVAEGARL-NRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 200 ~~~g~~VlI~G~-g~vG~~a~~la~~-~g~~~vi~~~~~~~~~~~~~ 244 (267)
.-.+++|+|+|+ |.+|...+..+.. .+..+++.+.++.+++..+.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La 198 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ 198 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence 456789999998 8999988877764 47779999999887776653
No 400
>PRK07045 putative monooxygenase; Reviewed
Probab=85.50 E-value=1.3 Score=40.83 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=28.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
-+|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~-~v~v~E~~~ 38 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGH-SVTVVERAA 38 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCC-cEEEEeCCC
Confidence 369999999999999888888899 888887555
No 401
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.47 E-value=2.4 Score=38.39 Aligned_cols=44 Identities=23% Similarity=0.226 Sum_probs=36.2
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
...+.+++|.|+ .++|...+.-+-..|+ +|+..+|+.++.+.++
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~ 76 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAK 76 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHH
Confidence 345578888898 8999999998888997 9999999986666553
No 402
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=85.39 E-value=1.1 Score=36.84 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=23.6
Q ss_pred EEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 207 AIFGLGAVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 207 lI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
+|+|+|+.|++++..++..|...+++++++.+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~ 32 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDR 32 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence 58899999999999999999954999997743
No 403
>PLN02778 3,5-epimerase/4-reductase
Probab=85.27 E-value=3.2 Score=36.99 Aligned_cols=54 Identities=15% Similarity=-0.006 Sum_probs=37.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH----HHHHcCCCEEECCCC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE----IGKKFGITDFINPAT 256 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~----~~~~~G~~~vi~~~~ 256 (267)
...+|||+|+ |.+|...++.+...|. +|+.........+ .+++.+.|.||+-..
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~-~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa 66 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGI-DFHYGSGRLENRASLEADIDAVKPTHVFNAAG 66 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC-EEEEecCccCCHHHHHHHHHhcCCCEEEECCc
Confidence 3468999987 9999999999988898 7765433222222 233567898886543
No 404
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=85.26 E-value=2.1 Score=37.96 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=36.5
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~ 44 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGAV 44 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCc
Confidence 37889999999987777777888 899999999998887776653
No 405
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=85.24 E-value=5.4 Score=35.58 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496 190 GVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245 (267)
Q Consensus 190 a~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~ 245 (267)
++..+....++++|++||=+|+|- |.+++.+|+..|. +|++++-+++..+.+++
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~ 113 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEK 113 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHH
Confidence 344467889999999999998753 4556677887788 99999999988777654
No 406
>PRK13243 glyoxylate reductase; Reviewed
Probab=85.23 E-value=2.5 Score=38.62 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK 239 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~ 239 (267)
.|++|.|+|.|.+|...++.++..|. +|++.+++.+.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~ 185 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP 185 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence 57899999999999999999999999 89999987543
No 407
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=85.05 E-value=2.7 Score=37.35 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=33.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
++|.|+|+|.+|...++.+...|. +|++.++++++++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~ 42 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSR 42 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHH
Confidence 579999999999998888888898 99999999988753
No 408
>PRK07236 hypothetical protein; Provisional
Probab=85.02 E-value=1.5 Score=40.40 Aligned_cols=34 Identities=21% Similarity=0.145 Sum_probs=29.1
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
..+|+|+|+|..|++++..+...|. +|.++++.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGW-DVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence 4679999999999998888888898 888887654
No 409
>PRK07190 hypothetical protein; Provisional
Probab=85.00 E-value=1.3 Score=42.50 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=28.0
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
-.|+|+|+|++|++++..+...|. +|.++++.+
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi-~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGL-NTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC-CEEEEeCCC
Confidence 369999999999998888888899 788887664
No 410
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.00 E-value=6 Score=35.38 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=39.8
Q ss_pred hcchhhhhHHHHHHHHhC-CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 182 LLSCGVSTGVGAAWKVAG-VEVGSTVAIFGLG-AVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 182 ~l~~~~~ta~~a~~~~~~-~~~g~~VlI~G~g-~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
.++|.....+. +++..+ --.|++|+|+|.| .+|...+.++...|+ +|.++.+...
T Consensus 137 ~~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~ 193 (286)
T PRK14175 137 FVPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSK 193 (286)
T ss_pred CCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCch
Confidence 45655444444 445555 4578999999986 599999999999999 8877765443
No 411
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.97 E-value=2.7 Score=37.44 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=33.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI 242 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~ 242 (267)
.+|.|+|+|.+|...++.+...|. .|+..+++++.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~ 43 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATA 43 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHH
Confidence 479999999999888887777899 99999999998776
No 412
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=84.96 E-value=1.9 Score=36.33 Aligned_cols=35 Identities=29% Similarity=0.271 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
.+.+|+|+|+|++|...+..+..+|..++.++|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 45789999999999999999999999999999876
No 413
>PLN02650 dihydroflavonol-4-reductase
Probab=84.91 E-value=2.1 Score=38.85 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=31.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE 241 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~ 241 (267)
..++|||.|+ |.+|...+..+...|. +|++++++.++.+
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r~~~~~~ 43 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY-TVRATVRDPANVK 43 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEcCcchhH
Confidence 4568999987 9999999988888898 8888877765543
No 414
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=84.87 E-value=1.4 Score=42.03 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=29.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
..+|+|+|+|+.|++++..++..|. +|+++.++.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~~ 43 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGH-TVVVFEREK 43 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecCC
Confidence 4789999999999999999999998 888887654
No 415
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.87 E-value=1.9 Score=37.50 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=30.7
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
+.+|+|.|+|++|..++..+..+|..++.++|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 47899999999999999999999999999887543
No 416
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=84.86 E-value=2 Score=38.35 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=30.9
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKF 240 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~ 240 (267)
.+++|||.|+ |.+|...+..+...|+ +|+++.++.++.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~ 42 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY-TINATVRDPKDR 42 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCCcch
Confidence 4689999987 9999999988888898 888776665543
No 417
>PRK06475 salicylate hydroxylase; Provisional
Probab=84.82 E-value=1.3 Score=41.11 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=28.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
++|+|+|+|+.|++++.+++..|. +|.++++.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~-~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGW-AVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 579999999999999888888898 788887554
No 418
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=84.81 E-value=2.5 Score=42.40 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=34.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.++++||.|+ |++|.+.++.+...|+ +|++++++.++.+.+
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~ 454 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAV 454 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence 4688999987 9999998888888899 999999988766544
No 419
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=84.79 E-value=4.4 Score=36.98 Aligned_cols=61 Identities=23% Similarity=0.168 Sum_probs=48.0
Q ss_pred HHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC---ChhhHHHHHHcCCCEEECCCC
Q 024496 195 WKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI---NPEKFEIGKKFGITDFINPAT 256 (267)
Q Consensus 195 ~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~---~~~~~~~~~~~G~~~vi~~~~ 256 (267)
.....+.+|.++||-.. |..|.+.+.++...|+ ++|++-. +.||...++.||+.-|.....
T Consensus 95 e~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a 159 (362)
T KOG1252|consen 95 EKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEIILTPPA 159 (362)
T ss_pred HHcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEEecChH
Confidence 34557999999999975 8888888999999999 7777643 347888889999987765433
No 420
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.74 E-value=2.4 Score=36.47 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=37.7
Q ss_pred CCCEEEEEcC--CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC
Q 024496 202 VGSTVAIFGL--GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGI 248 (267)
Q Consensus 202 ~g~~VlI~G~--g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~ 248 (267)
..+.|||.|+ |++|.+.+.-....|+ .|+++.|.-++...+. ++|.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl 54 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGL 54 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCC
Confidence 3467899974 9999987777777899 9999999999888776 6774
No 421
>PRK06924 short chain dehydrogenase; Provisional
Probab=84.65 E-value=2.6 Score=35.92 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=30.0
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh-hhHHH
Q 024496 204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP-EKFEI 242 (267)
Q Consensus 204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~-~~~~~ 242 (267)
+++||+|+ |.+|...++.+...|+ +|+++++++ ++++.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~-~V~~~~r~~~~~~~~ 41 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT-HVISISRTENKELTK 41 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC-EEEEEeCCchHHHHH
Confidence 47899987 9999998888877899 899888876 34333
No 422
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=84.64 E-value=1.5 Score=38.06 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=28.0
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
.|+|+|+|+.|++++..++..|. +|.++++...
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 38999999999998888888899 8999987653
No 423
>PRK07340 ornithine cyclodeaminase; Validated
Probab=84.60 E-value=6 Score=35.60 Aligned_cols=45 Identities=9% Similarity=-0.096 Sum_probs=37.0
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHHHHH
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGAR-LNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~-~~g~~~vi~~~~~~~~~~~~~ 244 (267)
-....+++|+|+|..|.+.+..+. ..+.++|.+.++++++.+.+.
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a 167 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFC 167 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 345678999999999999888886 468889999999998876653
No 424
>PRK06184 hypothetical protein; Provisional
Probab=84.52 E-value=1.4 Score=42.39 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=28.4
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
-.|+|+|+|+.|++++.++...|. +|.++++.+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi-~v~viE~~~ 36 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGV-SFRLIEKAP 36 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 469999999999999988888899 888887653
No 425
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=84.51 E-value=1.9 Score=37.22 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=29.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
.++++||.|+ |.+|.+.+..+...|+ +|+.++++.+
T Consensus 8 ~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~ 44 (266)
T PRK06171 8 QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGG 44 (266)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence 4678999987 8999999988888898 8887776543
No 426
>PRK08328 hypothetical protein; Provisional
Probab=84.47 E-value=2 Score=37.08 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.+.+|+|+|+|++|..++..+-..|..++.++|...
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 457899999999999999999999999999997543
No 427
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=84.45 E-value=2.5 Score=39.22 Aligned_cols=32 Identities=34% Similarity=0.435 Sum_probs=26.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
..|+|.|+|++|++++..+...|. +|.++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~-~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDL-RIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 359999999999997777777898 88888864
No 428
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=84.41 E-value=2.3 Score=33.13 Aligned_cols=34 Identities=35% Similarity=0.397 Sum_probs=28.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
..+|+|+|+|++|...+..+-..|..++..+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999998888888899999999754
No 429
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=84.40 E-value=3.5 Score=37.49 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=42.6
Q ss_pred HHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHH----HcCCCE
Q 024496 195 WKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGK----KFGITD 250 (267)
Q Consensus 195 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~----~~G~~~ 250 (267)
.+...++++++||.+|+| .|..++.+++..+. ..|++++.+++.++.++ +.|.+.
T Consensus 73 l~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n 132 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN 132 (322)
T ss_pred HHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence 455678899999999997 58889999997764 37999999998766654 366653
No 430
>PRK12747 short chain dehydrogenase; Provisional
Probab=84.24 E-value=3.4 Score=35.27 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=29.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD-INPEKF 240 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~-~~~~~~ 240 (267)
.+++++|.|+ +++|.+.++.+...|+ +|+++. +..++.
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~ 42 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEA 42 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHH
Confidence 4688999987 8999999998888899 777653 444443
No 431
>PRK12831 putative oxidoreductase; Provisional
Probab=84.21 E-value=1.9 Score=41.12 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=30.3
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI 235 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~ 235 (267)
...+.+|+|+|+|+.|+.++..++..|. +|++++.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~ 171 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEA 171 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEec
Confidence 4568899999999999999999998999 7887764
No 432
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.20 E-value=3.9 Score=38.56 Aligned_cols=35 Identities=34% Similarity=0.390 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.+++|+|+|+|.+|+.++..+...|+ .|.+++++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 46899999999999999999999999 899998864
No 433
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=84.16 E-value=2.5 Score=38.51 Aligned_cols=37 Identities=38% Similarity=0.363 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK 239 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~ 239 (267)
.|.+|.|+|.|.+|...+..++..|. +|++.+++++.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~ 181 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNK 181 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhH
Confidence 56789999999999999999999999 99999987654
No 434
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=84.14 E-value=2.2 Score=37.97 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=30.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK 239 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~ 239 (267)
.+.+|||.|+ |.+|...+..+...|. +|++++++.++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~~~~ 40 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRDPND 40 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcCCCc
Confidence 3678999987 9999999988888899 88888776543
No 435
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=84.10 E-value=2.3 Score=40.02 Aligned_cols=30 Identities=37% Similarity=0.471 Sum_probs=24.2
Q ss_pred EEEEEcCCHHHHHHHHHHHH----cCCCeEEEEcC
Q 024496 205 TVAIFGLGAVGLAVAEGARL----NRASKIIGVDI 235 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~----~g~~~vi~~~~ 235 (267)
.|+|+|+|++|++++..+.. .|. +|.++++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~-~v~viE~ 35 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDL-KVLLLDA 35 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCC-eEEEEeC
Confidence 38999999999887665554 688 8888887
No 436
>PRK12746 short chain dehydrogenase; Provisional
Probab=84.06 E-value=3 Score=35.57 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=30.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEE-EcCChhhHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIG-VDINPEKFE 241 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~-~~~~~~~~~ 241 (267)
.+.+++|.|+ |.+|...+..+...|+ +|++ ..++.++.+
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~~ 45 (254)
T PRK12746 5 DGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAAD 45 (254)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHH
Confidence 4678999987 9999999988888898 6665 466665543
No 437
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=84.06 E-value=3.3 Score=35.09 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=36.0
Q ss_pred EEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh--hHHHHHHcCCCEE
Q 024496 206 VAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE--KFEIGKKFGITDF 251 (267)
Q Consensus 206 VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~--~~~~~~~~G~~~v 251 (267)
|+|+|+ |.+|...++.+...+. +|.++.|+.. ..+.+++.|+..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv 48 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVV 48 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEe
Confidence 789998 9999999999998887 8888888753 4556677888644
No 438
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=84.01 E-value=1.5 Score=39.58 Aligned_cols=46 Identities=26% Similarity=0.285 Sum_probs=39.9
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCC
Q 024496 203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGIT 249 (267)
Q Consensus 203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~ 249 (267)
..+|.|+|.|.+|.-++.+|.-+|+ +|.+++.+.+|++.+.+ ++-+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~r 214 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGR 214 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCce
Confidence 3467888999999999999999999 99999999999999876 4543
No 439
>PRK12743 oxidoreductase; Provisional
Probab=84.01 E-value=3.2 Score=35.64 Aligned_cols=37 Identities=14% Similarity=-0.089 Sum_probs=28.9
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhH
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD-INPEKF 240 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~-~~~~~~ 240 (267)
++++||.|+ +.+|...++.+...|+ +|+++. ++.++.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~ 40 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGA 40 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHH
Confidence 468999987 8999999998888999 777664 454443
No 440
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=83.97 E-value=2.7 Score=38.23 Aligned_cols=37 Identities=35% Similarity=0.469 Sum_probs=33.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
-.|+++.|+|.|.+|++.+..++..|. +|+..++.+.
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~ 180 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN 180 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC
Confidence 358899999999999999999998888 9999988764
No 441
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.95 E-value=4.1 Score=34.90 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFEIGK 244 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~~~ 244 (267)
.+++++|.|+ |++|.+.++.+...|+ +|+++.+ +++..+.++
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~ 49 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELR 49 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHH
Confidence 4688999987 9999998888888898 7776644 333333333
No 442
>PRK08278 short chain dehydrogenase; Provisional
Probab=83.95 E-value=2.1 Score=37.34 Aligned_cols=36 Identities=33% Similarity=0.380 Sum_probs=30.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
++++++|.|+ |++|...+..+...|+ +|++++++.+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~ 41 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAE 41 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccc
Confidence 5678999987 8999998888888899 8998887654
No 443
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.91 E-value=2.5 Score=36.65 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=27.9
Q ss_pred CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 202 VGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 202 ~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
.+++++|.|+ +++|.+.+..+...|+ +|++++++
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~ 42 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAG 42 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCc
Confidence 4788999986 5999998888888899 88888654
No 444
>PRK06141 ornithine cyclodeaminase; Validated
Probab=83.88 E-value=4.9 Score=36.27 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=35.9
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHHHHH
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGAR-LNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~-~~g~~~vi~~~~~~~~~~~~~ 244 (267)
-....+|+|+|+|..|.+.+.... ..+.++|.+.++++++.+.+.
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a 167 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALA 167 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 356788999999999998876444 467779999999998876654
No 445
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.85 E-value=2.6 Score=37.62 Aligned_cols=41 Identities=27% Similarity=0.277 Sum_probs=30.1
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.++.|+|.|| +++|.+.+.-.-.+|+ +++.+.+..++++.+
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v 52 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERV 52 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHH
Confidence 5788999998 7999875555555799 666666667666665
No 446
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=83.78 E-value=1.6 Score=42.52 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=26.3
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
++|+|+|||+.|++++..++..|. .+++.++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~-~~~~fE~~~ 34 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGL-EVTCFEKSD 34 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT--EEEEEESSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-CCeEEecCC
Confidence 689999999999999999999999 888887665
No 447
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=83.75 E-value=2.7 Score=35.53 Aligned_cols=34 Identities=24% Similarity=0.116 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
.+++|||+|+|.+|...+..+...|+ +|.++..+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 57899999999999998888888898 88888654
No 448
>PRK08244 hypothetical protein; Provisional
Probab=83.75 E-value=1.5 Score=41.91 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=27.6
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.|+|+|+|++|++++..+...|. +|.++++.+
T Consensus 4 dVlIVGaGpaGl~lA~~L~~~G~-~v~viEr~~ 35 (493)
T PRK08244 4 EVIIIGGGPVGLMLASELALAGV-KTCVIERLK 35 (493)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 58999999999998888888899 888887654
No 449
>PRK07201 short chain dehydrogenase; Provisional
Probab=83.74 E-value=3 Score=41.24 Aligned_cols=40 Identities=28% Similarity=0.225 Sum_probs=33.7
Q ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++++|.|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 411 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALDEL 411 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 678999987 8999998888888899 999999988776543
No 450
>PRK05855 short chain dehydrogenase; Validated
Probab=83.71 E-value=3.1 Score=40.03 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=34.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
.+.++||+|+ |++|...++.+...|+ +|++++++.++++.+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~ 355 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERT 355 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4578999987 9999998888888899 799999988776543
No 451
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=83.68 E-value=3.6 Score=34.67 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=27.9
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-Chhh
Q 024496 204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEK 239 (267)
Q Consensus 204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~ 239 (267)
+++||+|+ |.+|...+..+...|+ +++++.+ ++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~ 37 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGY-RVAANCGPNEER 37 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHH
Confidence 46899987 9999998888888899 7877766 4443
No 452
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=83.67 E-value=3.2 Score=37.61 Aligned_cols=47 Identities=28% Similarity=0.324 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEE-EcCChhhHHHHHHcCCC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIG-VDINPEKFEIGKKFGIT 249 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~-~~~~~~~~~~~~~~G~~ 249 (267)
++++|.|+|.|.+|.+.+.-++..|. ++++ ..++.++.+.+.+.|+.
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~-~Viv~~~~~~~~~~~a~~~Gv~ 49 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGL-NVIVGLRKGGASWKKATEDGFK 49 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCC-eEEEEECcChhhHHHHHHCCCE
Confidence 47889999999999999999999998 5554 55555566666677764
No 453
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.66 E-value=4 Score=38.38 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=39.1
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF 246 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~ 246 (267)
....+++|+|.|.+|...++.+...|. .+++++.++++.+.+++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEE 273 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence 346789999999999999999888888 899999999988887764
No 454
>PRK05599 hypothetical protein; Provisional
Probab=83.64 E-value=3.2 Score=35.55 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=29.3
Q ss_pred EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
+++|.|+ +++|.+.+.... .|. +|+++++++++++.+
T Consensus 2 ~vlItGas~GIG~aia~~l~-~g~-~Vil~~r~~~~~~~~ 39 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC-HGE-DVVLAARRPEAAQGL 39 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh-CCC-EEEEEeCCHHHHHHH
Confidence 5889987 899998777655 487 899999988877654
No 455
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.60 E-value=2.5 Score=40.21 Aligned_cols=37 Identities=27% Similarity=0.456 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK 239 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~ 239 (267)
..+++|+|+|.|..|.+++.+++ .|+ +|+++|..++.
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~-~g~-~v~v~D~~~~~ 40 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQ-NKY-DVIVYDDLKAN 40 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHh-CCC-EEEEECCCCCc
Confidence 45789999999999999999999 598 99999965443
No 456
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=83.59 E-value=2.4 Score=38.48 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
+-+.++|||.|+ |.+|...+..+...|. +|+++++..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~ 49 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFS 49 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 345579999987 9999999999988898 899998743
No 457
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=83.49 E-value=1.5 Score=40.64 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=27.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
-.|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 51 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQP 51 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCC
Confidence 469999999999998888888898 888887544
No 458
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=83.45 E-value=1.7 Score=39.68 Aligned_cols=31 Identities=35% Similarity=0.469 Sum_probs=27.3
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 206 VAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGL-KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCC-EEEEEeCCC
Confidence 8899999999998888888898 899887775
No 459
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.37 E-value=3.2 Score=36.14 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=28.3
Q ss_pred CCCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGLG---AVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~g---~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.+++++|.|++ ++|.+.+..+...|+ +|+.++++.
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~ 42 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND 42 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecch
Confidence 57889999873 799988887777899 888887763
No 460
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.36 E-value=3.5 Score=35.04 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=29.0
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhHH
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD-INPEKFE 241 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~-~~~~~~~ 241 (267)
.++++||.|+ |.+|...+..+...|+ +|+++. +.+++.+
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~-~vv~~~~~~~~~~~ 44 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGA-RVVVNYHQSEDAAE 44 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-eEEEEcCCCHHHHH
Confidence 3578999987 9999999888888898 776654 3444433
No 461
>PRK08013 oxidoreductase; Provisional
Probab=83.34 E-value=1.7 Score=40.37 Aligned_cols=33 Identities=33% Similarity=0.365 Sum_probs=27.8
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
.|+|+|+|++|++++..+...|. +|.++++.++
T Consensus 5 dV~IvGaGpaGl~~A~~La~~G~-~v~viE~~~~ 37 (400)
T PRK08013 5 DVVIAGGGMVGLAVACGLQGSGL-RVAVLEQRVP 37 (400)
T ss_pred CEEEECcCHHHHHHHHHHhhCCC-EEEEEeCCCC
Confidence 58999999999998888777898 8998886543
No 462
>PRK08219 short chain dehydrogenase; Provisional
Probab=83.16 E-value=3.3 Score=34.54 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=30.7
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
+++||.|+ |.+|...+..+... . +|++++++.++.+.+.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~ 43 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELA 43 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHH
Confidence 57999987 99999888777666 5 8999999887755443
No 463
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.13 E-value=3.7 Score=35.55 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=28.5
Q ss_pred CCCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 201 EVGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 201 ~~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
-++++++|.|+ +++|.+.+..+...|+ +|+++.+.+
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~ 42 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVD 42 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcH
Confidence 35788999984 5899998888888899 888876553
No 464
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.11 E-value=3.4 Score=36.46 Aligned_cols=37 Identities=19% Similarity=0.418 Sum_probs=32.7
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFE 241 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~ 241 (267)
.+|.|+|+|.+|...+..+...|. +|+++++++++++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~ 40 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVD 40 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHH
Confidence 469999999999998888888898 8999999998875
No 465
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.06 E-value=4.3 Score=34.09 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=26.4
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI 235 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~ 235 (267)
+.++|||.|+ |.+|...+..+...|. +|+++.+
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~~ 38 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA-DVVVHYR 38 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 4568999987 9999999998888899 6555433
No 466
>PRK07069 short chain dehydrogenase; Validated
Probab=83.05 E-value=2.9 Score=35.50 Aligned_cols=37 Identities=30% Similarity=0.334 Sum_probs=29.4
Q ss_pred EEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-hhhHHHH
Q 024496 206 VAIFGL-GAVGLAVAEGARLNRASKIIGVDIN-PEKFEIG 243 (267)
Q Consensus 206 VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~-~~~~~~~ 243 (267)
++|.|+ |.+|...++.+...|+ +|++++++ .++++.+
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~ 40 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGA-KVFLTDINDAAGLDAF 40 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcchHHHHH
Confidence 788987 8999998888888899 89999887 5554443
No 467
>PRK07538 hypothetical protein; Provisional
Probab=83.05 E-value=1.8 Score=40.36 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=27.9
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
+|+|+|+|+.|++++..++..|. +|.++++.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGI-EVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-cEEEEEcCC
Confidence 58999999999999988888899 788887665
No 468
>PRK07985 oxidoreductase; Provisional
Probab=83.02 E-value=3.3 Score=36.66 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=29.1
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
-+++++||.|+ +++|.+.++.+...|+ +|+++++.
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~ 82 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLP 82 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCC
Confidence 36679999987 8999998888888899 88887653
No 469
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.01 E-value=3.5 Score=37.21 Aligned_cols=42 Identities=26% Similarity=0.103 Sum_probs=35.6
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF 246 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~ 246 (267)
.+|.|+|+|.+|.+.+..+...|. +|.+.++++++.+.+.+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~ 46 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAE 46 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh
Confidence 479999999999998888887888 899999988887776654
No 470
>PRK08618 ornithine cyclodeaminase; Validated
Probab=83.01 E-value=7.1 Score=35.39 Aligned_cols=45 Identities=16% Similarity=0.069 Sum_probs=35.7
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHH-HHcCCCeEEEEcCChhhHHHHH
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGA-RLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la-~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
-+..++++|+|+|..|.+.+..+ ...++++|.+.++++++.+.+.
T Consensus 124 ~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~ 169 (325)
T PRK08618 124 REDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFA 169 (325)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHH
Confidence 34567899999999998777554 4678889999999998876653
No 471
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=82.95 E-value=2.5 Score=38.13 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.|++|.|+|-|.+|...+++++..|. +|++.++..
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~ 178 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSG 178 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCc
Confidence 68899999999999999999999999 999998753
No 472
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=82.87 E-value=3 Score=38.36 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=27.2
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
-.|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGF-SVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 468999999999998877777788 888887653
No 473
>PRK12937 short chain dehydrogenase; Provisional
Probab=82.82 E-value=3.7 Score=34.66 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=27.8
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
++.+++|+|+ |.+|...+..+...|+ +++++.++
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~ 38 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAG 38 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence 5678999987 9999999998888899 66665543
No 474
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=82.82 E-value=2.8 Score=34.29 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=27.5
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
+|+|+|+|+.|+.++.-+...+. ++++++.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~-~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA-KVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCC-eEEEEeccc
Confidence 58999999999999999998899 888886544
No 475
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=82.79 E-value=2.8 Score=37.72 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=31.7
Q ss_pred CCCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496 201 EVGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243 (267)
Q Consensus 201 ~~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~ 243 (267)
-.|+++||.|+ .++|.+.++.+...|+ +|++ .+..++++..
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga-~Vv~-~~~~~~l~~~ 50 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAGA-EILV-GTWVPALNIF 50 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEE-EeCcchhhHH
Confidence 35889999988 7999999999988999 7777 4555554443
No 476
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=82.53 E-value=3.2 Score=35.65 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=38.4
Q ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496 204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251 (267)
Q Consensus 204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v 251 (267)
.+|||.|+ |.+|...+..+...|. +|.+..|++++..... .+.+.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~-~v~~~~r~~~~~~~~~-~~v~~~ 47 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH-EVRAAVRNPEAAAALA-GGVEVV 47 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC-EEEEEEeCHHHHHhhc-CCcEEE
Confidence 36899988 9999999999998888 9999999998888877 555443
No 477
>PLN02256 arogenate dehydrogenase
Probab=82.53 E-value=5.4 Score=35.93 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=40.7
Q ss_pred HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496 194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
++....-....+|.|+|.|.+|.+.+..++..|. +|+++++++. .+.+.++|+.
T Consensus 27 ~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv~ 80 (304)
T PLN02256 27 LQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGVS 80 (304)
T ss_pred HhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCCe
Confidence 3455555567789999999999988888887787 8999988764 3555667763
No 478
>PRK05868 hypothetical protein; Validated
Probab=82.45 E-value=2.1 Score=39.41 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=27.5
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.+|+|.|+|+.|++++..+...|. +|.++++.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~-~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGY-SVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Confidence 369999999999998888887898 788887554
No 479
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=82.39 E-value=2 Score=40.07 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=28.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
+|+|+|+|+.|.+++..+...|. +|.++++...
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~-~V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGI-QTFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCC-cEEEEecCCC
Confidence 58999999999999888888899 8999987643
No 480
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=82.35 E-value=4.1 Score=36.45 Aligned_cols=42 Identities=21% Similarity=0.150 Sum_probs=35.4
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G 247 (267)
+|.|+|+|.+|...+..+...|. .|.++++++++.+.+++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~ 44 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADR 44 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcC
Confidence 68999999999988887777788 8999999988888776654
No 481
>PRK09126 hypothetical protein; Provisional
Probab=82.33 E-value=1.9 Score=39.67 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=28.1
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
-.|+|+|+|+.|++++..+...|. +|+++++.+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~-~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGL-KVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence 358999999999998888888899 888887654
No 482
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.32 E-value=3.1 Score=36.26 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
...+|+|+|+|++|..++..+-..|..++.++|..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45789999999999999999999999998888654
No 483
>PRK08507 prephenate dehydrogenase; Validated
Probab=82.20 E-value=4.7 Score=35.47 Aligned_cols=45 Identities=24% Similarity=0.415 Sum_probs=36.9
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCCC
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGKKFGIT 249 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~~G~~ 249 (267)
+|.|+|.|.+|.+.+..++..|. .+|++.++++++.+.+.+.|..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~ 47 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLV 47 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCC
Confidence 58899999999987777777775 3788899999998888888863
No 484
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=82.16 E-value=2.1 Score=39.74 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=28.4
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
..|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCC-CEEEEECCC
Confidence 468999999999998888888899 888887665
No 485
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=82.08 E-value=4.3 Score=36.02 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=36.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~ 248 (267)
+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~ 46 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGA 46 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence 68999999999887777777787 89999999988888777665
No 486
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=82.05 E-value=5.1 Score=35.21 Aligned_cols=34 Identities=32% Similarity=0.273 Sum_probs=29.8
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVD 234 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~ 234 (267)
--+|.+|+|.|-|.+|+.+++++..+|+ +|+++.
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~Ga-kvvaVs 68 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGA-KVVTLS 68 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence 3468899999999999999999999999 888653
No 487
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=82.04 E-value=4.5 Score=35.20 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=35.4
Q ss_pred EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh------hhHHH-HHHcCCCEEECCC
Q 024496 205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP------EKFEI-GKKFGITDFINPA 255 (267)
Q Consensus 205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~------~~~~~-~~~~G~~~vi~~~ 255 (267)
+|||+|+ |.+|...+..+...|. +|+++++.. +.++. +.+...|.|++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~~a 58 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTSSQLDLTDPEALERLLRAIRPDAVVNTA 58 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCCcccCCCCHHHHHHHHHhCCCCEEEECC
Confidence 4899987 9999999999988898 888887742 22222 2233458887654
No 488
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.96 E-value=3.4 Score=38.33 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
.+.+|+|+|+|++|..++..+...|..++.++|..
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56789999999999999999999999999999876
No 489
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=81.95 E-value=2.8 Score=38.12 Aligned_cols=32 Identities=47% Similarity=0.667 Sum_probs=31.0
Q ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 024496 203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI 235 (267)
Q Consensus 203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~ 235 (267)
|++|.|+|.|.+|...++.++.+|. +|++.++
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDP 173 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEECC
Confidence 7899999999999999999999999 9999998
No 490
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=81.90 E-value=2.7 Score=38.77 Aligned_cols=34 Identities=32% Similarity=0.386 Sum_probs=30.5
Q ss_pred CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
.+|.|+|+|.+|.|.++.++.+|. ++++++.+++
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~-~v~vLdp~~~ 35 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGI-KVIVLDPDAD 35 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCC-EEEEecCCCC
Confidence 579999999999999999999999 9999986553
No 491
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=81.89 E-value=6.1 Score=29.46 Aligned_cols=61 Identities=28% Similarity=0.310 Sum_probs=46.2
Q ss_pred HHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496 194 AWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGKKFGITDFINP 254 (267)
Q Consensus 194 ~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~~G~~~vi~~ 254 (267)
.++.+++..-+.+++.-. -..-+.++..++.++. .++++...+++..+.++++|+++++.+
T Consensus 54 ~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 54 VLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp HHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred HHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 456778887788888743 5666777788886543 489998888999999999999999863
No 492
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=81.84 E-value=4.6 Score=33.93 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=28.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE 238 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~ 238 (267)
++++++|.|+ |.+|...+..+...|+ +|+++.++.+
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~ 40 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSE 40 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCch
Confidence 4578999987 9999999999888899 7766655443
No 493
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=81.78 E-value=3.2 Score=37.24 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=31.4
Q ss_pred EEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496 206 VAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244 (267)
Q Consensus 206 VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~ 244 (267)
|||.|+ |.+|...+.-+...+.++++++++++.++-.++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~ 40 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELE 40 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHH
Confidence 789987 999998887777778889999999998876664
No 494
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=81.78 E-value=3.2 Score=35.02 Aligned_cols=35 Identities=40% Similarity=0.459 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
...+|+|.|+|++|...++.+-..|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 44789999999999999988888999889999877
No 495
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=81.77 E-value=4.5 Score=34.67 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=29.2
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
.+++++|.|+ |++|.+.++.+...|+ +|+.+++..
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~ 44 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVE 44 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcc
Confidence 4688999987 8999999998888899 888876543
No 496
>PRK06128 oxidoreductase; Provisional
Probab=81.70 E-value=3.4 Score=36.64 Aligned_cols=35 Identities=23% Similarity=0.123 Sum_probs=28.6
Q ss_pred CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
-.++++||.|+ |++|.+.+..+...|+ +|+++.+.
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~ 88 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGA-DIALNYLP 88 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 35789999987 9999998888888899 77776543
No 497
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=81.68 E-value=2.4 Score=37.19 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=29.4
Q ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496 200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237 (267)
Q Consensus 200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~ 237 (267)
....-.|+|+|+|+.|++++..+...|. +|+++++..
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~ 58 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKL 58 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Confidence 3334569999999999998888887899 888887653
No 498
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.66 E-value=5.1 Score=37.88 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=34.9
Q ss_pred EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh-hH----HHHHHcCCCE
Q 024496 205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE-KF----EIGKKFGITD 250 (267)
Q Consensus 205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~-~~----~~~~~~G~~~ 250 (267)
+|+|+|.|+.|++++.++...|+ .|.+.|+... +. +.+++.|..-
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~~~~~~~~~l~~~gi~~ 51 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSPELLERQQELEQEGITV 51 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCchhhHHHHHHHHHcCCEE
Confidence 58999999999999999999999 9999997542 12 2345567543
No 499
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=81.65 E-value=2.3 Score=44.35 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
..|++|+|+|+|+.|++++..+...|. +|.++++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~ 338 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAF 338 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeC
Confidence 358999999999999999999999999 88888754
No 500
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.65 E-value=3.7 Score=38.66 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=29.7
Q ss_pred CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496 202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN 236 (267)
Q Consensus 202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~ 236 (267)
+++++||.|+ |++|...++.+...|+ +|+++++.
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~ 243 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVP 243 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5789999987 9999999998888999 88888774
Done!