BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024498
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q32KT5|CF136_BOVIN Uncharacterized protein C6orf136 homolog OS=Bos taurus PE=2 SV=1
Length = 315
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 23/184 (12%)
Query: 40 PLALSSAVTSLQIPALQDAQVKTPPGAQDNKQREKDDFYVNLGLAVRTLREDLPLLFTRD 99
P A+ Q P TP G ++ +L + LR++LP LF
Sbjct: 115 PCPCPGALIPFQAPGTAHPSPATPSGDPSMEE--------HLAVMYERLRQELPNLFLHS 166
Query: 100 LNYDIYRDDITFVDP-LNTFT-GIENYKLIFWALRFHGGILFREISLDVLRIWQPSENVI 157
+Y +Y D+ F++ LN T G Y L RF F ++ L++L++ + EN
Sbjct: 167 HDYTLYSSDVEFINEILNMRTKGRTWYILSLTLCRFLAWNYFAQLRLEILQLTRHPENWT 226
Query: 158 L-IRWNLRAVP----------RVPWEAEGQFQGSSRYKLDRNGKIYEHKVDNL--AFNFP 204
L RW L +P R E + S + L+ NG I H++D L + + P
Sbjct: 227 LQARWRLVGLPIHLLFLRFYKRDKEELYRTYDAYSTFYLNSNGLICRHRLDKLMPSHSPP 286
Query: 205 RPLK 208
P+K
Sbjct: 287 EPVK 290
>sp|Q5SQH8|CF136_HUMAN Uncharacterized protein C6orf136 OS=Homo sapiens GN=C6orf136 PE=2
SV=1
Length = 315
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 23/184 (12%)
Query: 40 PLALSSAVTSLQIPALQDAQVKTPPGAQDNKQREKDDFYVNLGLAVRTLREDLPLLFTRD 99
P A Q+P TP G ++ +L + LR++LP LF +
Sbjct: 115 PCPYPGAWIPFQVPGTAHPSPATPSGDPSMEE--------HLSVMYERLRQELPKLFLQS 166
Query: 100 LNYDIYRDDITFVDP-LNTFT-GIENYKLIFWALRFHGGILFREISLDVLRIWQPSENVI 157
+Y +Y D+ F++ LN T G Y L RF F + L+VL++ + EN
Sbjct: 167 HDYSLYSLDVEFINEILNIRTKGRTWYILSLTLCRFLAWNYFAHLRLEVLQLTRHPENWT 226
Query: 158 L-IRWNLRAVP----------RVPWEAEGQFQGSSRYKLDRNGKIYEHKVDNL--AFNFP 204
L RW L +P R E + S + L+ +G I H++D L + + P
Sbjct: 227 LQARWRLVGLPVHLLFLRFYKRDKDEHYRTYDAYSTFYLNSSGLICRHRLDKLMPSHSPP 286
Query: 205 RPLK 208
P+K
Sbjct: 287 TPVK 290
>sp|Q6MG12|CF136_RAT Uncharacterized protein C6orf136 homolog OS=Rattus norvegicus PE=2
SV=1
Length = 172
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 80 NLGLAVRTLREDLPLLFTRDLNYDIYRDDITFVDP-LNTFT-GIENYKLIFWALRFHGGI 137
+L + LR++LP LF R +Y IY D+ F++ LN T G Y + RF
Sbjct: 4 HLAVMHERLRQELPTLFLRSHDYTIYSMDVEFINEILNVRTKGRTFYVMSLTLCRFLAWN 63
Query: 138 LFREISLDVLRIWQPSENVIL-IRWNLRAVP----------RVPWEAEGQFQGSSRYKLD 186
F + L++L++ + EN L RW L +P R + F S + L+
Sbjct: 64 YFAQFRLEILQLTRHPENWTLQARWRLIGLPVHMLFLRFYRRDKEDLYRTFDAFSTFYLN 123
Query: 187 RNGKIYEHKVDNL 199
+G I H +D L
Sbjct: 124 SSGLICRHHLDKL 136
>sp|Q5TM64|CF136_MACMU Uncharacterized protein C6orf136 homolog OS=Macaca mulatta PE=4
SV=1
Length = 172
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 80 NLGLAVRTLREDLPLLFTRDLNYDIYRDDITFVDP-LNTFT-GIENYKLIFWALRFHGGI 137
+L + LR++LP LF + +Y +Y D+ F++ LN T G Y L RF
Sbjct: 4 HLSVMYERLRQELPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTLCRFLAWN 63
Query: 138 LFREISLDVLRIWQPSENVIL-IRWNLRAVP----------RVPWEAEGQFQGSSRYKLD 186
F ++ L+VL++ + EN L RW L +P R E + S + L+
Sbjct: 64 YFSQLRLEVLQLTRHPENWTLQARWRLVGLPVHLLFLRFYKRDKDELYRTYDAYSTFYLN 123
Query: 187 RNGKIYEHKVDNL--AFNFPRPLKPAASVLDLVTACPASPNPTF 228
+G I H++D L + + P P+K V LV + P P
Sbjct: 124 SSGLICRHRLDKLMPSHSPPTPVKKLL-VGALVALGLSEPEPNL 166
>sp|A1BE55|GPMA_CHLPD 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
OS=Chlorobium phaeobacteroides (strain DSM 266) GN=gpmA
PE=3 SV=1
Length = 247
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 171 WEAEGQFQGSSRYKLDRNGKIYEHKVDNLAFNFPRPLKPAASVLDLVTACPASPNPTFLW 230
W E +F G L NG+ N AF R +K A V D+ LW
Sbjct: 14 WNRENRFTGWHDIDLTENGR-------NEAFQAGRLMKEAGLVFDMAYTSVLKRAIRTLW 66
Query: 231 GPVDAYSSSWVELYRAVRETLNQEGYLHVQ 260
+D+ W+ ++++ R LN+ Y +Q
Sbjct: 67 NAMDSMDLMWISVFKSWR--LNERHYGALQ 94
>sp|O94410|MU163_SCHPO Meiotically up-regulated gene 163 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug163 PE=1 SV=1
Length = 186
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 18/149 (12%)
Query: 77 FYVNLGLAVRTLREDLPLLFTR---DLNYDIYRDDITFVDPLN--TFTGIENYKLIFWAL 131
+ V G ++ L++ +PL+ R D D + + + F + LN G+ YK IF
Sbjct: 38 YNVETGKTIQILQDLVPLVLYRALPDAILDHHVELVIFPNSLNFPRIEGLTIYKFIFKTA 97
Query: 132 RF-----HGGILFREISLDVLRIWQPSENVILIRWNLRAVPRVPWEAE--GQFQGSSRYK 184
R +G R I + + ++ EN N+R + W A ++ +
Sbjct: 98 RLLLSSTYGSSAKRPIDI-IHQLHSSMENK-----NVRYSMKCNWIASPNDEYTWVFHFD 151
Query: 185 LDRNGKIYEHKVDNLAFNFPRPLKPAASV 213
+D+ G IY H +DNL N R + +++
Sbjct: 152 IDKKGIIYRHIIDNLERNRSRQCEKISAL 180
>sp|Q62187|TTF1_MOUSE Transcription termination factor 1 OS=Mus musculus GN=Ttf1 PE=1
SV=2
Length = 859
Score = 32.3 bits (72), Expect = 3.6, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 71 QREKDDFYVNLGLAVRTLREDLPLLFTRDLNY--DIYRDDI 109
+RE DD V+LG AVR LRE +P + R +YRDD+
Sbjct: 454 RRESDDSDVDLGSAVRQLREFIPDIQERAATTIRRMYRDDL 494
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,053,419
Number of Sequences: 539616
Number of extensions: 4511912
Number of successful extensions: 9399
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9398
Number of HSP's gapped (non-prelim): 7
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)