Query 024498
Match_columns 267
No_of_seqs 175 out of 434
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:02:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10184 DUF2358: Uncharacteri 100.0 1.7E-33 3.7E-38 227.7 13.9 112 83-194 2-113 (113)
2 KOG4457 Uncharacterized conser 99.9 4.5E-25 9.8E-30 190.6 10.7 129 78-206 32-176 (202)
3 PF12680 SnoaL_2: SnoaL-like d 99.1 1.1E-09 2.4E-14 81.3 11.6 86 102-194 17-102 (102)
4 TIGR02096 conserved hypothetic 98.9 1.4E-08 3E-13 80.6 11.5 95 101-203 19-121 (129)
5 PF07366 SnoaL: SnoaL-like pol 98.8 4.8E-08 1E-12 78.0 11.5 90 101-196 19-115 (126)
6 cd00781 ketosteroid_isomerase 98.7 8.6E-08 1.9E-12 75.7 9.3 92 101-203 24-117 (122)
7 KOG2546 Abl interactor ABI-1, 98.4 5.9E-08 1.3E-12 94.5 -1.0 115 75-191 63-179 (483)
8 TIGR02960 SigX5 RNA polymerase 96.4 0.045 9.7E-07 50.6 11.3 90 101-205 225-317 (324)
9 PF07858 LEH: Limonene-1,2-epo 96.3 0.021 4.5E-07 47.7 7.8 89 102-202 24-115 (125)
10 PRK08241 RNA polymerase factor 95.9 0.082 1.8E-06 49.4 10.7 89 101-203 235-325 (339)
11 TIGR02246 conserved hypothetic 94.9 0.61 1.3E-05 36.2 11.0 79 85-166 6-90 (128)
12 COG4319 Ketosteroid isomerase 94.4 0.39 8.6E-06 40.9 9.3 83 102-189 32-120 (137)
13 PF13474 SnoaL_3: SnoaL-like d 94.2 1.2 2.6E-05 34.0 11.0 90 101-195 20-115 (121)
14 COG5485 Predicted ester cyclas 91.7 0.65 1.4E-05 39.2 6.5 82 107-196 32-119 (131)
15 cd00531 NTF2_like Nuclear tran 91.2 4 8.7E-05 30.1 10.1 90 101-196 20-121 (124)
16 COG3631 Ketosteroid isomerase- 88.3 4.7 0.0001 33.9 9.2 107 86-202 8-122 (133)
17 PF14534 DUF4440: Domain of un 84.2 14 0.00031 27.0 10.8 77 102-186 21-99 (107)
18 PF02136 NTF2: Nuclear transpo 76.1 34 0.00073 26.4 9.8 95 87-187 5-106 (118)
19 PF13577 SnoaL_4: SnoaL-like d 70.3 46 0.001 25.4 11.3 79 83-166 7-93 (127)
20 TIGR03357 VI_zyme type VI secr 63.9 58 0.0013 26.6 8.4 107 76-191 18-131 (133)
21 COG4308 LimA Limonene-1,2-epox 54.0 46 0.00099 28.2 6.1 90 101-203 28-119 (130)
22 PRK09636 RNA polymerase sigma 48.6 1.4E+02 0.0029 27.5 9.0 31 101-131 192-230 (293)
23 PF03284 PHZA_PHZB: Phenazine 39.7 2.6E+02 0.0057 24.5 11.5 90 101-196 38-137 (162)
24 COG4922 Uncharacterized protei 35.5 2.8E+02 0.006 23.5 8.5 70 117-196 42-111 (129)
25 PF08830 DUF1806: Protein of u 29.2 2.3E+02 0.005 23.6 6.4 64 123-193 30-93 (114)
26 PF07080 DUF1348: Protein of u 25.9 4.4E+02 0.0095 22.8 10.3 85 102-195 32-118 (143)
27 PF09005 DUF1897: Domain of un 25.5 27 0.00058 23.7 0.3 19 221-247 4-22 (38)
No 1
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=100.00 E-value=1.7e-33 Score=227.65 Aligned_cols=112 Identities=50% Similarity=0.983 Sum_probs=108.4
Q ss_pred HHHHHHHhhcchhhcCCCCccccccceEEECCCCccccHHHHHHHHHHHHhhcccceeeeEEEEEEeEeccCCEEEEEEE
Q 024498 83 LAVRTLREDLPLLFTRDLNYDIYRDDITFVDPLNTFTGIENYKLIFWALRFHGGILFREISLDVLRIWQPSENVILIRWN 162 (267)
Q Consensus 83 ~ai~~LreDlp~Lf~~~ld~sIYa~DV~F~DP~~~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~~~d~~i~vRW~ 162 (267)
+++++||+|||.+|+++++++||++||+|+||+++|+|+++|+++||++|++++++|.+++++|+++++..+++|.+||+
T Consensus 2 ~~~~~Lr~D~~~~f~~~~~~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~rW~ 81 (113)
T PF10184_consen 2 DVIRTLREDLPRFFTGDLDYSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRARWR 81 (113)
T ss_pred hHHHHHHHHHHHHhcCCCChhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEEEE
Confidence 57999999999999999999999999999999999999999999999999999988999999999999866669999999
Q ss_pred EEEEeCCCCCcceEEEEEEEEEEcCCCcEEEE
Q 024498 163 LRAVPRVPWEAEGQFQGSSRYKLDRNGKIYEH 194 (267)
Q Consensus 163 m~g~prLpw~p~i~~dG~S~y~~d~dGkI~~H 194 (267)
|+|.|++||+|.+.++|+|+|++|++|+|++|
T Consensus 82 ~~g~~~l~w~p~~~~~G~S~~~ln~~g~I~~H 113 (113)
T PF10184_consen 82 LRGVPRLPWRPRISFDGTSTYTLNSDGLIYRH 113 (113)
T ss_pred EEEEeCCCcCCcEEEEEEEEEEECCCCcEEeC
Confidence 99999999999999999999999999999999
No 2
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.92 E-value=4.5e-25 Score=190.55 Aligned_cols=129 Identities=29% Similarity=0.523 Sum_probs=117.2
Q ss_pred hhhHHHHHHHHHhhcchhhcCCCCccccccceEEECCCC--ccccHHHHHHHHHHHHhhcccceeeeEEEEEEeE-eccC
Q 024498 78 YVNLGLAVRTLREDLPLLFTRDLNYDIYRDDITFVDPLN--TFTGIENYKLIFWALRFHGGILFREISLDVLRIW-QPSE 154 (267)
Q Consensus 78 ~~nl~~ai~~LreDlp~Lf~~~ld~sIYa~DV~F~DP~~--~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~-~~~d 154 (267)
..+++.++++||+++|.+|...+||++|++||+|.|.+. +..|+..|...|+++|++|+.+|..++|||+++. .+++
T Consensus 32 pe~L~~~yerLr~tlPklF~~~~DYS~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~vt~h~d~ 111 (202)
T KOG4457|consen 32 PEQLEHVYERLRETLPKLFRRRMDYSFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLSVTPHIDE 111 (202)
T ss_pred hHHHHHHHHHHHHHhHHHHhhcccceeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEeecccCCC
Confidence 346899999999999999999999999999999999986 5699999999999999999999999999999997 4688
Q ss_pred CEEEEEEEEEEEe--CCCCCcc-----------eEEEEEEEEEEcCCCcEEEEEEcceeccCCCC
Q 024498 155 NVILIRWNLRAVP--RVPWEAE-----------GQFQGSSRYKLDRNGKIYEHKVDNLAFNFPRP 206 (267)
Q Consensus 155 ~~i~vRW~m~g~p--rLpw~p~-----------i~~dG~S~y~~d~dGkI~~Hrvd~v~~d~~~~ 206 (267)
+++++|||+.|.+ ++.|+++ .+|||+|++++|++|+||+|++|++|+|.+++
T Consensus 112 ~Tvr~RWRv~gvsv~~~f~~~~l~~~de~~~~~swyDgYSv~yl~~~GlI~kh~ldK~mpdes~~ 176 (202)
T KOG4457|consen 112 GTVRCRWRVKGVSVTRIFMNPRLLRFDERMQNLSWYDGYSVLYLDGNGLIYKHTLDKMMPDESKS 176 (202)
T ss_pred ceEEEEEEEecceEeeeeechHHhhHHHHhcccccccceeEEEECCCceEEeeehhhhCcccCcc
Confidence 9999999999975 4455443 47999999999999999999999999998874
No 3
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=99.13 E-value=1.1e-09 Score=81.30 Aligned_cols=86 Identities=24% Similarity=0.514 Sum_probs=74.2
Q ss_pred ccccccceEEECCCCccccHHHHHHHHHHHHhhcccceeeeEEEEEEeEeccCCEEEEEEEEEEEeCCCCCcceEEEEEE
Q 024498 102 YDIYRDDITFVDPLNTFTGIENYKLIFWALRFHGGILFREISLDVLRIWQPSENVILIRWNLRAVPRVPWEAEGQFQGSS 181 (267)
Q Consensus 102 ~sIYa~DV~F~DP~~~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~~~d~~i~vRW~m~g~prLpw~p~i~~dG~S 181 (267)
.++|++|++|.||.+...|.++|+..+..+ +. .+...++++.++.. .++.+.++|++.++. .+-+..+.+.|++
T Consensus 17 ~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~--~~--~~~~~~~~~~~~~~-~gd~v~~~~~~~~~~-~~~g~~~~~~~~~ 90 (102)
T PF12680_consen 17 AALFAPDAVFHDPGGTLRGREAIREFFEEF--FE--SFPDIRFEIHDIFA-DGDRVVVEWTVTGTT-PPTGQPISFRGCS 90 (102)
T ss_dssp HHTEEEEEEEEETTSEEESHHHHHHHHHHH--HH--HEEEEEEEEEEEEE-ETTEEEEEEEEEEEE-TTTSCEEEEEEEE
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHH--Hh--cCCceEEEEEEEEE-cCCEEEEEEEEEEEE-cCCCCEEEEEEEE
Confidence 579999999999977999999999998776 44 57899999999876 888999999999862 2346678999999
Q ss_pred EEEEcCCCcEEEE
Q 024498 182 RYKLDRNGKIYEH 194 (267)
Q Consensus 182 ~y~~d~dGkI~~H 194 (267)
.|+| ++|||.+|
T Consensus 91 ~~~~-~dgkI~~~ 102 (102)
T PF12680_consen 91 VFRF-EDGKIVEH 102 (102)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-ECCEEEEC
Confidence 9999 57999998
No 4
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=98.94 E-value=1.4e-08 Score=80.61 Aligned_cols=95 Identities=16% Similarity=0.312 Sum_probs=77.2
Q ss_pred CccccccceEEECCCC--ccccHHHHHHHHHHHHhhcccceeeeEEEEEEeEeccCCEEEEEEEEEEEeC-----CC-CC
Q 024498 101 NYDIYRDDITFVDPLN--TFTGIENYKLIFWALRFHGGILFREISLDVLRIWQPSENVILIRWNLRAVPR-----VP-WE 172 (267)
Q Consensus 101 d~sIYa~DV~F~DP~~--~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~~~d~~i~vRW~m~g~pr-----Lp-w~ 172 (267)
..++|++|++|.||.. ...|++.++..+..+ +. .+.+.+++++++...+++.+.+.|+++|+.+ ++ -+
T Consensus 19 ~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~--~~--~~~~~~~~i~~~~~~~~~~v~~~~~~~g~~~g~~~g~~~~g 94 (129)
T TIGR02096 19 VLALLAEDVLYDDNQGGRVLGGKAQLARFLAPY--RT--AFPDLLVDVVVCRNDEGVRVAAEWTVHGTYRTAFLGLPASG 94 (129)
T ss_pred HHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHH--HH--hCchhhceeEEEEecCCcEEEEEEEEeeeeccccCCCCCCC
Confidence 4689999999999965 567899999998776 44 4778899999877634449999999999753 22 35
Q ss_pred cceEEEEEEEEEEcCCCcEEEEEEcceeccC
Q 024498 173 AEGQFQGSSRYKLDRNGKIYEHKVDNLAFNF 203 (267)
Q Consensus 173 p~i~~dG~S~y~~d~dGkI~~Hrvd~v~~d~ 203 (267)
.++.++|++.|+|+ +|||.+|+. +||.
T Consensus 95 ~~~~~~~~~~~~~~-~gkI~~~~~---y~D~ 121 (129)
T TIGR02096 95 KTYSIRGVTFFVFD-DGKIKRETT---YYNL 121 (129)
T ss_pred CEEEeeeeEEEEEe-CCEEEEEEE---EecH
Confidence 67899999999998 899999998 6773
No 5
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=98.84 E-value=4.8e-08 Score=78.02 Aligned_cols=90 Identities=22% Similarity=0.420 Sum_probs=77.3
Q ss_pred CccccccceEEECCC-CccccHHHHHHHHHHHHhhcccceeeeEEEEEEeEeccCCEEEEEEEEEEEeCC------CCCc
Q 024498 101 NYDIYRDDITFVDPL-NTFTGIENYKLIFWALRFHGGILFREISLDVLRIWQPSENVILIRWNLRAVPRV------PWEA 173 (267)
Q Consensus 101 d~sIYa~DV~F~DP~-~~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~~~d~~i~vRW~m~g~prL------pw~p 173 (267)
-.++|++|+.+.+|. ....|++.|+..+..+ +. .|.+.++++.++.. +++.+.++|+++|+.+- |-+.
T Consensus 19 ~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~--~~--afPD~~~~i~~~~~-~gd~v~~~~~~~Gth~g~~~g~~ptgk 93 (126)
T PF07366_consen 19 LDELVAPDVVFHDPGPGPPVGREGFKEFLKEL--RA--AFPDLRFEIEDVVA-EGDRVAVRWTFTGTHTGEFMGIPPTGK 93 (126)
T ss_dssp HHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHH--HH--HSTTTEEEEEEEEE-ETTEEEEEEEEEEEESSEBTTBE-TTE
T ss_pred HHHhcCCCEEEEecCCCCCCCHHHHHHHHHHH--HH--HCCCCEEEEEEEEE-ECCEEEEEEEEEEeecCCcCCcCCCCC
Confidence 478999999999987 6889999999998666 44 68899999999877 77999999999998653 2356
Q ss_pred ceEEEEEEEEEEcCCCcEEEEEE
Q 024498 174 EGQFQGSSRYKLDRNGKIYEHKV 196 (267)
Q Consensus 174 ~i~~dG~S~y~~d~dGkI~~Hrv 196 (267)
++.+.|++.|++++ |||.+|..
T Consensus 94 ~v~~~~~~~~~~~~-gkI~e~~~ 115 (126)
T PF07366_consen 94 PVEFRGMSIFRFED-GKIVEEWV 115 (126)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEE
T ss_pred EEEEEEEEEEEEEC-CEEEEEEE
Confidence 78999999999995 99999987
No 6
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=98.72 E-value=8.6e-08 Score=75.69 Aligned_cols=92 Identities=12% Similarity=0.103 Sum_probs=69.3
Q ss_pred CccccccceEEECCCC--ccccHHHHHHHHHHHHhhcccceeeeEEEEEEeEeccCCEEEEEEEEEEEeCCCCCcceEEE
Q 024498 101 NYDIYRDDITFVDPLN--TFTGIENYKLIFWALRFHGGILFREISLDVLRIWQPSENVILIRWNLRAVPRVPWEAEGQFQ 178 (267)
Q Consensus 101 d~sIYa~DV~F~DP~~--~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~~~d~~i~vRW~m~g~prLpw~p~i~~d 178 (267)
-.++|++|++|.||.. .++|++++++.+..+ .. .+...++.+..... .++.+.+.|++++.+. +..+.+.
T Consensus 24 ~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~--~~--~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~---g~~~~~~ 95 (122)
T cd00781 24 IVALFADDATVEDPVGSPPRSGRAAIAAFYAQS--LG--GAKRLELTGPVRAS-HGGEAAFAFRVEFEWE---GQPCVVR 95 (122)
T ss_pred HHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHH--hc--cCceEEecCceeee-cCCEEEEEEEEEEEeC---CceEEEE
Confidence 4689999999999965 599999999998775 33 23344443333333 5677888999887653 5678999
Q ss_pred EEEEEEEcCCCcEEEEEEcceeccC
Q 024498 179 GSSRYKLDRNGKIYEHKVDNLAFNF 203 (267)
Q Consensus 179 G~S~y~~d~dGkI~~Hrvd~v~~d~ 203 (267)
|++.|+|+++|||.+++. +|+.
T Consensus 96 ~~~v~~~~~dGkI~~~~~---y~d~ 117 (122)
T cd00781 96 VIDVMRFDADGRIVSMRA---YWGP 117 (122)
T ss_pred EEEEEEECCCccChHHHH---hcCc
Confidence 999999988899999986 5553
No 7
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=98.35 E-value=5.9e-08 Score=94.53 Aligned_cols=115 Identities=21% Similarity=0.235 Sum_probs=106.9
Q ss_pred chhhhh--HHHHHHHHHhhcchhhcCCCCccccccceEEECCCCccccHHHHHHHHHHHHhhcccceeeeEEEEEEeEec
Q 024498 75 DDFYVN--LGLAVRTLREDLPLLFTRDLNYDIYRDDITFVDPLNTFTGIENYKLIFWALRFHGGILFREISLDVLRIWQP 152 (267)
Q Consensus 75 def~~n--l~~ai~~LreDlp~Lf~~~ld~sIYa~DV~F~DP~~~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~~ 152 (267)
-.|++| ++++++-|+...+.|+.-+...++|+.+|.|.++.+.+.||+.|+.++..+|+++.+.+.++...|.-+|+|
T Consensus 63 vaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ihkekvArreIg~lttnk~~~r~hkiIap~nl~~~iryvrkP 142 (483)
T KOG2546|consen 63 VAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVDIHKEKVARREIGNLTTNKGLSRQHKIIAPANLEVPIRYVRKP 142 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheecchhhhhhhccceeeccccccccceeccccCCCCccceecc
Confidence 358888 899999999999999999999999999999999999999999999999999999999999999999889987
Q ss_pred cCCEEEEEEEEEEEeCCCCCcceEEEEEEEEEEcCCCcE
Q 024498 153 SENVILIRWNLRAVPRVPWEAEGQFQGSSRYKLDRNGKI 191 (267)
Q Consensus 153 ~d~~i~vRW~m~g~prLpw~p~i~~dG~S~y~~d~dGkI 191 (267)
-| ..+++|.-||+ |.+|.....++|+++++|+.+|.-
T Consensus 143 id-~~mLd~igHGI-r~~~~~rg~~~g~~t~~l~rs~ps 179 (483)
T KOG2546|consen 143 ID-YSMLDDIGHGI-RGSWETRGRFDGTSTGKLSRSGPS 179 (483)
T ss_pred cc-ceeeecccccc-ccccccccCcCcccccccCCCCCc
Confidence 77 88999999999 788999999999999999988743
No 8
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=96.37 E-value=0.045 Score=50.58 Aligned_cols=90 Identities=10% Similarity=0.017 Sum_probs=63.1
Q ss_pred CccccccceEEECCCC--ccccHHHHHHHHHHHHhh-cccceeeeEEEEEEeEeccCCEEEEEEEEEEEeCCCCCcceEE
Q 024498 101 NYDIYRDDITFVDPLN--TFTGIENYKLIFWALRFH-GGILFREISLDVLRIWQPSENVILIRWNLRAVPRVPWEAEGQF 177 (267)
Q Consensus 101 d~sIYa~DV~F~DP~~--~f~Gl~~Yk~~f~~LR~~-~~~~f~~~~feV~~i~~~~d~~i~vRW~m~g~prLpw~p~i~~ 177 (267)
..+++++||+|.+|.. .+.|.+++...|..+ . +. .+...+++. ... .++.+.+.|.... -+....+
T Consensus 225 l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~--~~~~-~~~~~~~~~--~~~-~g~~~~v~~~~~~-----~~~~~~~ 293 (324)
T TIGR02960 225 LTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTV--CPGE-GAAGMRLLP--TIA-NGQPAAAMYMRRP-----DAERHTA 293 (324)
T ss_pred HHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHh--cccc-cCCceeEEE--eee-cCCceEEEEEEcC-----CCCeeee
Confidence 4679999999999974 599999999887654 1 21 333444433 333 6677777774221 1335689
Q ss_pred EEEEEEEEcCCCcEEEEEEcceeccCCC
Q 024498 178 QGSSRYKLDRNGKIYEHKVDNLAFNFPR 205 (267)
Q Consensus 178 dG~S~y~~d~dGkI~~Hrvd~v~~d~~~ 205 (267)
.|+..++|. ||||...+. ++|.+.
T Consensus 294 ~~v~~~~~~-dGkI~~~~~---~~~~~~ 317 (324)
T TIGR02960 294 FQLHVLEIR-GGRITHVTA---FLDGPS 317 (324)
T ss_pred eEEEEEEEc-CCcEEEEEE---EcCCHH
Confidence 999999994 899999987 677553
No 9
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=96.30 E-value=0.021 Score=47.74 Aligned_cols=89 Identities=16% Similarity=0.278 Sum_probs=60.1
Q ss_pred ccccccceEEEC-CCCccccHHHHHHHHHHHHhhcccceeeeEEEEEEeEeccCCEEEEEEEEEEEe--CCCCCcceEEE
Q 024498 102 YDIYRDDITFVD-PLNTFTGIENYKLIFWALRFHGGILFREISLDVLRIWQPSENVILIRWNLRAVP--RVPWEAEGQFQ 178 (267)
Q Consensus 102 ~sIYa~DV~F~D-P~~~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~~~d~~i~vRW~m~g~p--rLpw~p~i~~d 178 (267)
..+.++|+++.+ |+..++|+++.++.+..+ .. .+....++||++.. . +.+.+.+|+-..- ..+.+..+.+-
T Consensus 24 ~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~--~~--~~~~~e~~i~~iaa-d-g~~VltER~D~l~~~dG~~~~~~~V~ 97 (125)
T PF07858_consen 24 ASLFDDDAVYHNVPLPPIRGRDAIRAFLRGF--LD--SLSGFEFDIHRIAA-D-GDVVLTERTDVLRFADGPLRIQFPVC 97 (125)
T ss_dssp HHCEECC-EEEETTTEEEESHHHHHHHHHCC--HC--CCEEEEEEEEEEEE-E-TTEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred HHhcCCCcEEEeCCCCCcccHHHHHHHHHHH--hc--ccceeEEEEEEEee-c-CCEEEEEeEeeeeeecCCeEEEEEEE
Confidence 356688856665 899999999999996554 23 46688899998765 3 4566788886532 22333345566
Q ss_pred EEEEEEEcCCCcEEEEEEcceecc
Q 024498 179 GSSRYKLDRNGKIYEHKVDNLAFN 202 (267)
Q Consensus 179 G~S~y~~d~dGkI~~Hrvd~v~~d 202 (267)
|+.++. +|||..-|+ |+|
T Consensus 98 GvfEv~---dGkI~~WRD---YFD 115 (125)
T PF07858_consen 98 GVFEVR---DGKITLWRD---YFD 115 (125)
T ss_dssp EEEEEE---TTEEEEEEE---E--
T ss_pred EEEEEE---CCEEEEEec---cCC
Confidence 665554 699999997 666
No 10
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=95.89 E-value=0.082 Score=49.40 Aligned_cols=89 Identities=11% Similarity=0.045 Sum_probs=59.4
Q ss_pred CccccccceEEECCCCc--cccHHHHHHHHHHHHhhcccceeeeEEEEEEeEeccCCEEEEEEEEEEEeCCCCCcceEEE
Q 024498 101 NYDIYRDDITFVDPLNT--FTGIENYKLIFWALRFHGGILFREISLDVLRIWQPSENVILIRWNLRAVPRVPWEAEGQFQ 178 (267)
Q Consensus 101 d~sIYa~DV~F~DP~~~--f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~~~d~~i~vRW~m~g~prLpw~p~i~~d 178 (267)
-.+++++||++.+|-.. +.|.+++...|..+ .....+...+++.. .. .++.+.+.+.. . .-+....+.
T Consensus 235 l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~--~~~~~~~~~~~~~~--~~-~g~~v~~~~~~---~--~~g~~~~~~ 304 (339)
T PRK08241 235 LVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQ--CPGAGCGGSRLVPT--RA-NGQPAFAQYMR---D--PDGGGHRPW 304 (339)
T ss_pred HHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhh--ccccCCCceEEEEe--ec-CCCeEEEEEEE---c--CCCCeeecc
Confidence 46799999999998653 99999999887654 12111233444332 23 55666664421 1 113456788
Q ss_pred EEEEEEEcCCCcEEEEEEcceeccC
Q 024498 179 GSSRYKLDRNGKIYEHKVDNLAFNF 203 (267)
Q Consensus 179 G~S~y~~d~dGkI~~Hrvd~v~~d~ 203 (267)
|+..|.++ ||||.+-+. +||.
T Consensus 305 ~v~v~~v~-dGkI~~~~~---y~d~ 325 (339)
T PRK08241 305 ALHVLELR-GGRIAHVTS---FLDT 325 (339)
T ss_pred eEEEEEEe-CCEEEEEEE---EcCh
Confidence 99999998 799999887 6764
No 11
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=94.86 E-value=0.61 Score=36.23 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=48.0
Q ss_pred HHHHHhhcc-hhhcCCC--CccccccceEEECCC-CccccHHHHHHHHHHHHhhccccee--eeEEEEEEeEeccCCEEE
Q 024498 85 VRTLREDLP-LLFTRDL--NYDIYRDDITFVDPL-NTFTGIENYKLIFWALRFHGGILFR--EISLDVLRIWQPSENVIL 158 (267)
Q Consensus 85 i~~LreDlp-~Lf~~~l--d~sIYa~DV~F~DP~-~~f~Gl~~Yk~~f~~LR~~~~~~f~--~~~feV~~i~~~~d~~i~ 158 (267)
++.|.+.|. .+..++. ..++|++|+.|.++. ..+.|++++..++..+ +.. ... ..++++..+...+++.+.
T Consensus 6 i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~--~~~-~~~~~~~~~~~~~i~~~~~~~A~ 82 (128)
T TIGR02246 6 IRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAF--LAG-PYKGTRVTIDVIEVRFLGPDLAI 82 (128)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHH--hcc-cCCCcEEEeeeEEEEecCCCEEE
Confidence 444445454 3333444 478999999999654 4679999999998654 332 122 246655566543556666
Q ss_pred EEEEEEEE
Q 024498 159 IRWNLRAV 166 (267)
Q Consensus 159 vRW~m~g~ 166 (267)
+....++.
T Consensus 83 ~~~~~~~~ 90 (128)
T TIGR02246 83 VHAIQTIT 90 (128)
T ss_pred EEEEEEEE
Confidence 55444444
No 12
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=94.40 E-value=0.39 Score=40.95 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=55.1
Q ss_pred ccccccceEEECCCC-ccccHHHHHHHHHHHHhhcccceeeeEEEEEEeEe-ccCCEEEEE--EEEEEEeCCCCCcceEE
Q 024498 102 YDIYRDDITFVDPLN-TFTGIENYKLIFWALRFHGGILFREISLDVLRIWQ-PSENVILIR--WNLRAVPRVPWEAEGQF 177 (267)
Q Consensus 102 ~sIYa~DV~F~DP~~-~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~-~~d~~i~vR--W~m~g~prLpw~p~i~~ 177 (267)
.+.|++|++|-+|.+ .++|.+.|+..|..+ +.. +-....|++.++.. .+++.+++. |.+.+. ..-++....
T Consensus 32 ~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~--~~~-~~~~~~f~~~el~v~~~GD~a~~~~~~~~~~~--~~dg~~~~~ 106 (137)
T COG4319 32 ADFYTDDAVVFPPPGLQRKGKAAIRKAFEGI--FAM-GIGPLKFTLEELQVHESGDVAFVTALLLLTGT--KKDGPPADL 106 (137)
T ss_pred HHhcCCceEEecCCCCcccCHHHHHHHHHHH--HHh-ccCCCcceeeeeeeeccCCEEEEEEeeeeecc--CCCCcchhh
Confidence 478999999999975 889999999999887 441 23367777777652 367776554 555544 233444445
Q ss_pred EEEEEEEE--cCCC
Q 024498 178 QGSSRYKL--DRNG 189 (267)
Q Consensus 178 dG~S~y~~--d~dG 189 (267)
.|--++.| +.+|
T Consensus 107 ~~Rat~v~rK~~dg 120 (137)
T COG4319 107 AGRATYVFRKEADG 120 (137)
T ss_pred eeeeEEEEEEcCCC
Confidence 55555555 4564
No 13
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=94.17 E-value=1.2 Score=34.05 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=56.4
Q ss_pred CccccccceEEECCCC--ccccHHHHHHHHHHHHhhcccceeeeEEEEEEeE-eccCCEEEEEEEEEEEeCCCCCcceEE
Q 024498 101 NYDIYRDDITFVDPLN--TFTGIENYKLIFWALRFHGGILFREISLDVLRIW-QPSENVILIRWNLRAVPRVPWEAEGQF 177 (267)
Q Consensus 101 d~sIYa~DV~F~DP~~--~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~-~~~d~~i~vRW~m~g~prLpw~p~i~~ 177 (267)
..++|++|+.+.++.. .+.|.++++.++... +.. +..+.+++..+. ...++.+.+.+.++...+ .-+.....
T Consensus 20 ~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~--~~~--~~~~~~~~~~~~v~~~~~~a~~~~~~~~~~~-~~~~~~~~ 94 (121)
T PF13474_consen 20 LLSLFSDDFVFFGTGPGEIWRGREAIRAYFERD--FES--FRPISIEFEDVQVSVSGDVAVVTGEFRLRFR-NDGEEIEM 94 (121)
T ss_dssp HHHHEEEEEEEEETTSSSEEESHHHHHHHHHHH--HHT--HSEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CTTCEEEE
T ss_pred HHHhhCCCEEEEcCCCCceECCHHHHHHHHHHH--hhh--CceEEEEEEEEEEEECCCEEEEEEEEEEEEe-cCCcccee
Confidence 3678999999999654 568999999998765 442 356666666553 347788888887766532 22233344
Q ss_pred EEEEE--EEEcCCC-cEEEEE
Q 024498 178 QGSSR--YKLDRNG-KIYEHK 195 (267)
Q Consensus 178 dG~S~--y~~d~dG-kI~~Hr 195 (267)
.|..+ |+-.++| ||+.|.
T Consensus 95 ~~r~t~v~~k~~~~Wki~h~H 115 (121)
T PF13474_consen 95 RGRATFVFRKEDGGWKIVHIH 115 (121)
T ss_dssp EEEEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEEEEEECCEEEEEEEE
Confidence 44444 4444333 555554
No 14
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=91.70 E-value=0.65 Score=39.20 Aligned_cols=82 Identities=18% Similarity=0.356 Sum_probs=58.8
Q ss_pred cceEEECCCCccccHHHHHHHHHHHHhhcccceeeeEEEEEEeEeccCCEEEEEEEEEEEeC-----C-CCCcceEEEEE
Q 024498 107 DDITFVDPLNTFTGIENYKLIFWALRFHGGILFREISLDVLRIWQPSENVILIRWNLRAVPR-----V-PWEAEGQFQGS 180 (267)
Q Consensus 107 ~DV~F~DP~~~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~~~d~~i~vRW~m~g~pr-----L-pw~p~i~~dG~ 180 (267)
+|+++.+ ++-.|++.|..++-.. +. -|.+.+|++..+.. ++..+..|=++.++|+ + |-++++.|.-.
T Consensus 32 ~~~v~~n--g~~~glsgyr~ml~~d--f~--aiPdl~f~ie~lva-e~~~vaarl~Fdctp~G~i~Gip~nGkrV~Fse~ 104 (131)
T COG5485 32 DGNVMHN--GRLQGLSGYREMLVRD--FS--AIPDLSFEIERLVA-EGDRVAARLTFDCTPSGEIMGIPPNGKRVRFSEN 104 (131)
T ss_pred cCeeeeC--CceechHHHHHHHHhh--Hh--hCCCcceEEEEEee-cCCceEEEEEEccCcCceEeccCCCCcEEEeehh
Confidence 3444442 3668999999997443 44 47799999988766 7888889999988876 2 34556666555
Q ss_pred EEEEEcCCCcEEEEEE
Q 024498 181 SRYKLDRNGKIYEHKV 196 (267)
Q Consensus 181 S~y~~d~dGkI~~Hrv 196 (267)
--|.|- +|||.+|.-
T Consensus 105 vfy~f~-~~KI~~vws 119 (131)
T COG5485 105 VFYEFE-NGKIVEVWS 119 (131)
T ss_pred hhhhhc-CCeEEeeeh
Confidence 555554 699999964
No 15
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=91.24 E-value=4 Score=30.15 Aligned_cols=90 Identities=22% Similarity=0.197 Sum_probs=52.9
Q ss_pred CccccccceEEECCC-----CccccHHHHHHHHHHHHhhcccceeeeEE-EEEEeEeccC---CEEEEEEEEEEEeCCCC
Q 024498 101 NYDIYRDDITFVDPL-----NTFTGIENYKLIFWALRFHGGILFREISL-DVLRIWQPSE---NVILIRWNLRAVPRVPW 171 (267)
Q Consensus 101 d~sIYa~DV~F~DP~-----~~f~Gl~~Yk~~f~~LR~~~~~~f~~~~f-eV~~i~~~~d---~~i~vRW~m~g~prLpw 171 (267)
...+|++|++|..|. ....|+++++..+..+ ... ......+ .-..+....+ ..+...|.+.....
T Consensus 20 l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~--~~~-~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 93 (124)
T cd00531 20 LALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRL--PFG-PSRTRHLVSNVDVQPGDDGEGVVVSVFGVLRTRGD--- 93 (124)
T ss_pred HHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhc--CCC-CCceEEEEEeEEEEeCCCCEEEEEEEEEEEEEccC---
Confidence 577999999999987 5779999999998766 210 0111222 1122222222 23555566655432
Q ss_pred CcceEEEEEEEEEEcC---CCcEEEEEE
Q 024498 172 EAEGQFQGSSRYKLDR---NGKIYEHKV 196 (267)
Q Consensus 172 ~p~i~~dG~S~y~~d~---dGkI~~Hrv 196 (267)
+....+.|.-.+.+.. .+||...+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~g~w~i~~~~~ 121 (124)
T cd00531 94 GEQDVFAGGQTFVLRPQGGGGKIANRRF 121 (124)
T ss_pred CceeEEEEEEEEEEEEeCCEEEEEEEEE
Confidence 2345566666666654 578887765
No 16
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=88.34 E-value=4.7 Score=33.86 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=69.7
Q ss_pred HHHHhhcchhhcCCC--CccccccceEEECCCC-----cc-ccHHHHHHHHHHHHhhcccceeeeEEEEEEeEeccCCEE
Q 024498 86 RTLREDLPLLFTRDL--NYDIYRDDITFVDPLN-----TF-TGIENYKLIFWALRFHGGILFREISLDVLRIWQPSENVI 157 (267)
Q Consensus 86 ~~LreDlp~Lf~~~l--d~sIYa~DV~F~DP~~-----~f-~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~~~d~~i 157 (267)
+.++.-|..+..+.+ ..+++++|+++.=|-. .+ .|.+..+..|..+ .+ .+..+++++..++..++..+
T Consensus 8 ~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~---~r-~~~~~~~~~~~~~~~gD~~~ 83 (133)
T COG3631 8 DLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALL---PR-LIEDGRFTVETVYVSGDPVG 83 (133)
T ss_pred hHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhC---hh-hcccccccceEEEEcCCceE
Confidence 344444444455554 4689999999994432 33 4666666665443 44 67789999999887677777
Q ss_pred EEEEEEEEEeCCCCCcceEEEEEEEEEEcCCCcEEEEEEcceecc
Q 024498 158 LIRWNLRAVPRVPWEAEGQFQGSSRYKLDRNGKIYEHKVDNLAFN 202 (267)
Q Consensus 158 ~vRW~m~g~prLpw~p~i~~dG~S~y~~d~dGkI~~Hrvd~v~~d 202 (267)
-+.|.-...-+ -+.+..-+=...+++. ||||.+-++ ++|
T Consensus 84 ~v~~~~~~~~~--~G~~~~~~~~~v~~vr-dGrI~~~~~---y~D 122 (133)
T COG3631 84 AVFRTRGRVSR--TGKPYENRYAFVIRVR-DGRITRYRE---YVD 122 (133)
T ss_pred EEEEecCcccc--cCceeecceEEEEEEe-CCEEEEEEE---Eec
Confidence 67776543322 1344556667777777 799999776 566
No 17
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=84.16 E-value=14 Score=27.05 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=48.4
Q ss_pred ccccccceEEECCCCccccHHHHHHHHHHHHhhcccceeeeEEEEEEeEeccCCEE--EEEEEEEEEeCCCCCcceEEEE
Q 024498 102 YDIYRDDITFVDPLNTFTGIENYKLIFWALRFHGGILFREISLDVLRIWQPSENVI--LIRWNLRAVPRVPWEAEGQFQG 179 (267)
Q Consensus 102 ~sIYa~DV~F~DP~~~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~~~d~~i--~vRW~m~g~prLpw~p~i~~dG 179 (267)
.++|++|+.|..|.....|++.+...+..- . .-....+++..++.. .++.+ ..+|++.. .. .+..+.+.|
T Consensus 21 ~~~~~~d~~~~~~~g~~~~~~~~l~~~~~~--~--~~~~~~~~~~~~v~~-~gd~a~~~~~~~~~~--~~-~g~~~~~~~ 92 (107)
T PF14534_consen 21 ASLYADDFVFVGPGGTILGKEAILAAFKSG--F--ARFSSIKFEDVEVRV-LGDTAVVRGRWTFTW--RG-DGEPVTIRG 92 (107)
T ss_dssp HTTEEEEEEEEETTSEEEEHHHHHHHHHHH--C--EEEEEEEEEEEEEEE-ETTEEEEEEEEEEEE--TT-TTEEEEEEE
T ss_pred HhhhCCCEEEECCCCCEeCHHHHHHHHhhc--c--CCCceEEEEEEEEEE-ECCEEEEEEEEEEEE--ec-CCceEEEEE
Confidence 689999999999999888999988887552 1 123455565555554 45554 44455544 22 234455666
Q ss_pred EEEEEEc
Q 024498 180 SSRYKLD 186 (267)
Q Consensus 180 ~S~y~~d 186 (267)
.....+-
T Consensus 93 ~~~~v~~ 99 (107)
T PF14534_consen 93 RFTSVWK 99 (107)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5555443
No 18
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=76.12 E-value=34 Score=26.44 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=56.9
Q ss_pred HHHhhcchhhcCCC--CccccccceEEECCCCc--cccHHHHHHHHHHHHhhcccceeeeEEEEEEeE-ec-cCCEEEEE
Q 024498 87 TLREDLPLLFTRDL--NYDIYRDDITFVDPLNT--FTGIENYKLIFWALRFHGGILFREISLDVLRIW-QP-SENVILIR 160 (267)
Q Consensus 87 ~LreDlp~Lf~~~l--d~sIYa~DV~F~DP~~~--f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~-~~-~d~~i~vR 160 (267)
.+++-|..|-.+++ ...+|++|..+.++... +.|+++....|..+ -...++++|..+. +| ......+-
T Consensus 5 Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l------~~~~~~~~i~~~d~qp~~~~~~~i~ 78 (118)
T PF02136_consen 5 FVQQYYQLFDSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSL------PATGVQHRITSVDCQPSPSSDGSIL 78 (118)
T ss_dssp HHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHH------TTSSEEEEEEEEEEEEEEECCSEEE
T ss_pred HHHHHHHHHccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcC------CCcccEEEecccccccccccCCcEE
Confidence 34444443333233 57899999999998765 99999999998887 2223466666553 32 12233446
Q ss_pred EEEEEEeCCCCCc-ceEEEEEEEEEEcC
Q 024498 161 WNLRAVPRVPWEA-EGQFQGSSRYKLDR 187 (267)
Q Consensus 161 W~m~g~prLpw~p-~i~~dG~S~y~~d~ 187 (267)
+.+.|..+....+ ...|.-+-.+.-.+
T Consensus 79 i~v~G~~~~~~~~~~~~F~q~FvL~~~~ 106 (118)
T PF02136_consen 79 ITVTGQFKEDDNPNPRRFSQTFVLVPQN 106 (118)
T ss_dssp EEEEEEEEETTSEEEEEEEEEEEEEEET
T ss_pred EEEEeEEEecCCCcccEEEEEEEEEEcC
Confidence 6777765544443 34555555555443
No 19
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=70.26 E-value=46 Score=25.44 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=49.8
Q ss_pred HHHHHHHhhcchhhcCCC---CccccccceEEECCC---CccccHHHHHHHHHHHHhhcccceeeeEEEEE--EeEeccC
Q 024498 83 LAVRTLREDLPLLFTRDL---NYDIYRDDITFVDPL---NTFTGIENYKLIFWALRFHGGILFREISLDVL--RIWQPSE 154 (267)
Q Consensus 83 ~ai~~LreDlp~Lf~~~l---d~sIYa~DV~F~DP~---~~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~--~i~~~~d 154 (267)
..|+.|-..|........ -.++|++|++|.=+- ..+.|++++...+... ... ....+--+. .+.. .+
T Consensus 7 ~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~--~~~--~~~~~H~~~~~~v~~-dg 81 (127)
T PF13577_consen 7 AAIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRAR--FDG--FAATRHMVTNPVVDV-DG 81 (127)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHH--HHH--EEEEEEEEEEEEEEE-ET
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHh--ccc--ccceeEEccceEEEE-cC
Confidence 345555555554444442 578999999998764 5899999999998775 211 111111111 1223 66
Q ss_pred CEEEEEEEEEEE
Q 024498 155 NVILIRWNLRAV 166 (267)
Q Consensus 155 ~~i~vRW~m~g~ 166 (267)
+++.++|.+...
T Consensus 82 d~A~~~~~~~~~ 93 (127)
T PF13577_consen 82 DTATVRSYVLAT 93 (127)
T ss_dssp TEEEEEEEEEEE
T ss_pred CEEEEEEEEEEE
Confidence 789999999765
No 20
>TIGR03357 VI_zyme type VI secretion system lysozyme-related protein. The description for PFAM family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.
Probab=63.89 E-value=58 Score=26.62 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=56.8
Q ss_pred hhhhhHHHHHHHHHhhcchhhcCCCCccccccce---EEEC-CCCccccHHHHHHHHHHHHhhcccceeeeEEEEEEeEe
Q 024498 76 DFYVNLGLAVRTLREDLPLLFTRDLNYDIYRDDI---TFVD-PLNTFTGIENYKLIFWALRFHGGILFREISLDVLRIWQ 151 (267)
Q Consensus 76 ef~~nl~~ai~~LreDlp~Lf~~~ld~sIYa~DV---~F~D-P~~~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~ 151 (267)
..........+.+++++..++....-.....+|- .|.| +++.-.....+.+.+... +. .| +||+...++..
T Consensus 18 ~~~~~~~~l~~sI~~~L~~LLnTr~g~~~~~~~yGl~d~~~~~~~~~~~~~~i~~~I~~a--I~--r~-EPRl~~~~V~~ 92 (133)
T TIGR03357 18 TRRSSAEQLRESIRRHLERLLNTRRGSCASLPDYGLPDLNDLSLSSADDRRRIRRAIEQA--IE--RY-EPRLSSVRVTA 92 (133)
T ss_pred cccCCHHHHHHHHHHHHHHHHccCCCccccccccCCcccccccccCHHHHHHHHHHHHHH--HH--hc-CCCcCceEEEE
Confidence 4455677788889999988887665433333333 2333 222222333444443332 33 23 67777766653
Q ss_pred --ccCCEEEEEEEEEEEeCCCCC-cceEEEEEEEEEEcCCCcE
Q 024498 152 --PSENVILIRWNLRAVPRVPWE-AEGQFQGSSRYKLDRNGKI 191 (267)
Q Consensus 152 --~~d~~i~vRW~m~g~prLpw~-p~i~~dG~S~y~~d~dGkI 191 (267)
..+....+++.+.|..+...+ ..+.|+ ..+|.+|++
T Consensus 93 ~~~~~~~~~l~f~I~~~l~~~~~~~~l~f~----~~ld~~g~~ 131 (133)
T TIGR03357 93 LEDEEDPLALRFRIEAELDVDGGPEPVSFD----ALLDGSGRY 131 (133)
T ss_pred ecCCCCccEEEEEEEEEEEeCCCCccEEEE----EEECCCCcE
Confidence 234456788888887543222 234443 334445665
No 21
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.97 E-value=46 Score=28.22 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=52.6
Q ss_pred CccccccceEEEC-CCCccccHHHHHHHHHHHHhhcccceeeeEEEEEEeEeccCCEEEEEEEEEEEeCCCCCcc-eEEE
Q 024498 101 NYDIYRDDITFVD-PLNTFTGIENYKLIFWALRFHGGILFREISLDVLRIWQPSENVILIRWNLRAVPRVPWEAE-GQFQ 178 (267)
Q Consensus 101 d~sIYa~DV~F~D-P~~~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~~~d~~i~vRW~m~g~prLpw~p~-i~~d 178 (267)
...+..+|-+..+ |+.+++|.+.-...+.- ++.. .....|+|++|.. .++.+ +.=|+-.+ .-++. ..|-
T Consensus 28 vr~~~~~d~v~~n~gis~i~G~~~~ia~l~~--~~~~--~~~~ef~I~riAa-dg~~V-ltER~D~~---~~g~~~~~~~ 98 (130)
T COG4308 28 VRRLGTPDTVYNNVGISTIHGPAETIALLRP--RMAG--ILGFEFKILRIAA-DGGAV-LTERLDAR---IDGPLWVQFW 98 (130)
T ss_pred HHHhcCCCeeeccCCcccccchhhhhhhhcc--ccCC--cceeEEEEEEEec-cccee-hhhhhhhh---ccCCcEEEEE
Confidence 4566778888888 48899999988777321 2221 2367888888754 33322 22222211 11221 2344
Q ss_pred EEEEEEEcCCCcEEEEEEcceeccC
Q 024498 179 GSSRYKLDRNGKIYEHKVDNLAFNF 203 (267)
Q Consensus 179 G~S~y~~d~dGkI~~Hrvd~v~~d~ 203 (267)
-+-+|.+. +|||..-|+ ++|.
T Consensus 99 V~GvfEV~-~~rI~~WRD---YFDv 119 (130)
T COG4308 99 VCGVFEVE-DGRIVLWRD---YFDV 119 (130)
T ss_pred EEEEEEEe-CCEEEeehh---hhhH
Confidence 44456666 699999996 5553
No 22
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=48.64 E-value=1.4e+02 Score=27.46 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=24.1
Q ss_pred CccccccceEEE-CCC-------CccccHHHHHHHHHHH
Q 024498 101 NYDIYRDDITFV-DPL-------NTFTGIENYKLIFWAL 131 (267)
Q Consensus 101 d~sIYa~DV~F~-DP~-------~~f~Gl~~Yk~~f~~L 131 (267)
..+++++||+|. |.- ..+.|.+...+.|..+
T Consensus 192 l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~ 230 (293)
T PRK09636 192 LVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGL 230 (293)
T ss_pred HHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHH
Confidence 578999999999 542 3478999988887555
No 23
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=39.65 E-value=2.6e+02 Score=24.53 Aligned_cols=90 Identities=19% Similarity=0.302 Sum_probs=58.2
Q ss_pred CccccccceEEECCCC------ccccHHHHHH-HHHHHHhhcccceeeeEEEEEEeEe-ccCCEEEEEEEEEEEeCCCCC
Q 024498 101 NYDIYRDDITFVDPLN------TFTGIENYKL-IFWALRFHGGILFREISLDVLRIWQ-PSENVILIRWNLRAVPRVPWE 172 (267)
Q Consensus 101 d~sIYa~DV~F~DP~~------~f~Gl~~Yk~-~f~~LR~~~~~~f~~~~feV~~i~~-~~d~~i~vRW~m~g~prLpw~ 172 (267)
-.++|++|=.--...+ .++|.+++++ ..|.++ .|.+-...-.++.. ..++.+.+.-.=+|.-++|.-
T Consensus 38 Rh~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslk-----cFPDWeW~nv~ifeT~DP~~fwVEcdG~G~i~fpGy 112 (162)
T PF03284_consen 38 RHELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLK-----CFPDWEWYNVRIFETQDPNHFWVECDGRGKILFPGY 112 (162)
T ss_dssp GGGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHH-----HSTT-EEEEEEEEEBSSTTEEEEEEEEEEEE--TTS
T ss_pred hheeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHH-----HCCCcEEEEEEeecccCCCEEEEEecCccceecCCC
Confidence 4677888877665543 5799999999 556653 45444443334432 367888888888888777877
Q ss_pred cceEEEE--EEEEEEcCCCcEEEEEE
Q 024498 173 AEGQFQG--SSRYKLDRNGKIYEHKV 196 (267)
Q Consensus 173 p~i~~dG--~S~y~~d~dGkI~~Hrv 196 (267)
|+..+.- +--|.|+ +|||.+.|+
T Consensus 113 peg~y~NHfiHsFel~-nGkI~~~RE 137 (162)
T PF03284_consen 113 PEGYYENHFIHSFELE-NGKIKRNRE 137 (162)
T ss_dssp --EEEEEEEEEEEEEE-TTEEEEEEE
T ss_pred CcccceeeeEEEEEee-CCEEEeehh
Confidence 7766553 3446666 699999997
No 24
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.51 E-value=2.8e+02 Score=23.52 Aligned_cols=70 Identities=17% Similarity=0.300 Sum_probs=37.8
Q ss_pred ccccHHHHHHHHHHHHhhcccceeeeEEEEEEeEeccCCEEEEEEEEEEEeCCCCCcceEEEEEEEEEEcCCCcEEEEEE
Q 024498 117 TFTGIENYKLIFWALRFHGGILFREISLDVLRIWQPSENVILIRWNLRAVPRVPWEAEGQFQGSSRYKLDRNGKIYEHKV 196 (267)
Q Consensus 117 ~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~~i~~~~d~~i~vRW~m~g~prLpw~p~i~~dG~S~y~~d~dGkI~~Hrv 196 (267)
--.|.+.+.++|.-+ +.. -...+..|.+... +++-+.+.-- -..+-| +.-..--+=+|+++ ||||.+|=+
T Consensus 42 vpdGk~~fv~fFt~f--fk~--~P~~~~kiVr~ia-dGdLV~vh~h--qt~~~p--g~~~~v~~DtfR~d-dgkivEHWD 111 (129)
T COG4922 42 VPDGKDGFVRFFTEF--FKE--KPRISTKIVRVIA-DGDLVTVHYH--QTVSEP--GSYTTVTFDTFRID-DGKIVEHWD 111 (129)
T ss_pred CCCchHHHHHHHHHH--HHh--CccccceeeEEec-cCCEEEEEEe--eeeCCC--CcceeEEEEEEEee-CCceeeccc
Confidence 348999999998665 331 1133344444433 5555544321 111112 12233345578888 589999953
No 25
>PF08830 DUF1806: Protein of unknown function (DUF1806); InterPro: IPR014934 This entry consists of bacterial uncharacterised proteins. The structure of one of the proteins has been solved and it adopts a beta barrel-like structure. ; PDB: 1NJH_A.
Probab=29.20 E-value=2.3e+02 Score=23.62 Aligned_cols=64 Identities=16% Similarity=0.294 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhcccceeeeEEEEEEeEeccCCEEEEEEEEEEEeCCCCCcceEEEEEEEEEEcCCCcEEE
Q 024498 123 NYKLIFWALRFHGGILFREISLDVLRIWQPSENVILIRWNLRAVPRVPWEAEGQFQGSSRYKLDRNGKIYE 193 (267)
Q Consensus 123 ~Yk~~f~~LR~~~~~~f~~~~feV~~i~~~~d~~i~vRW~m~g~prLpw~p~i~~dG~S~y~~d~dGkI~~ 193 (267)
+|...+.--.|-...++.+..+...+-.-.+++ -.|+......-| +..+|.|+|.+|++|+..-
T Consensus 30 AYAsH~d~~~~~agafiRNa~i~ye~g~i~G~g----PyRvGLK~~~GW---vYaEGLTh~e~d~~~rLLl 93 (114)
T PF08830_consen 30 AYASHFDESFFNAGAFIRNAKIRYEHGKIKGDG----PYRVGLKLEIGW---VYAEGLTHYEVDEEGRLLL 93 (114)
T ss_dssp -----------EEEEEEEEEEE-EEEEEEESSS----SEEEEEEESSSE---EEEEEE-EEEE-TT--EEE
T ss_pred hhhccccccccChhhEEEeeEEEEEEeEEEcCC----CeEEEEecCCCE---EEEccceeeEEcCCCcEEE
Confidence 444444333223333555555544433221233 233333333345 7899999999998886654
No 26
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=25.94 E-value=4.4e+02 Score=22.83 Aligned_cols=85 Identities=18% Similarity=0.304 Sum_probs=58.9
Q ss_pred ccccccceEEECCCCccccHHHHHHHHHHHHhhcccceeeeEEEEE-EeEeccCCEEEEEEEEEEEe-CCCCCcceEEEE
Q 024498 102 YDIYRDDITFVDPLNTFTGIENYKLIFWALRFHGGILFREISLDVL-RIWQPSENVILIRWNLRAVP-RVPWEAEGQFQG 179 (267)
Q Consensus 102 ~sIYa~DV~F~DP~~~f~Gl~~Yk~~f~~LR~~~~~~f~~~~feV~-~i~~~~d~~i~vRW~m~g~p-rLpw~p~i~~dG 179 (267)
.-.|++|++.++-..-++|++.....+..- +-.+....+. ++|.-.++.|-||..-.+.- ...| ..--|
T Consensus 32 alaYT~Ds~WRNR~eF~~GR~~I~~FLtrK------W~rE~~YrLiKELwaf~~nRIAVRF~YE~~d~~gqW---~RsyG 102 (143)
T PF07080_consen 32 ALAYTPDSVWRNRDEFLTGREEIVAFLTRK------WERELDYRLIKELWAFTDNRIAVRFAYEWHDDSGQW---FRSYG 102 (143)
T ss_dssp HTTEEEEEEEEETTEEE-SHHHHHHHHHHH------HHHSEEEEEEEEEEEEETTEEEEEEEEEEE-TTS-E---EEEEE
T ss_pred eeccCCCCcccCcccccCcHHHHHHHHHHH------HHHhhhhhhHHhhhhccCCeEEEEEeEEEEcCCCCE---Eeccc
Confidence 457999999998888899999999886442 3334554444 56767899999998887762 2222 34568
Q ss_pred EEEEEEcCCCcEEEEE
Q 024498 180 SSRYKLDRNGKIYEHK 195 (267)
Q Consensus 180 ~S~y~~d~dGkI~~Hr 195 (267)
.=...||++|+..+-.
T Consensus 103 nEnWeFd~~GlM~~R~ 118 (143)
T PF07080_consen 103 NENWEFDEDGLMRRRH 118 (143)
T ss_dssp EEEEEE-TTS-EEEEE
T ss_pred ccccccCCCccHHHhh
Confidence 9999999999876543
No 27
>PF09005 DUF1897: Domain of unknown function (DUF1897); InterPro: IPR015096 This domain is found in Psi proteins produced by Drosophila, and in various eukaryotic hypothetical proteins. It has no known function. ; PDB: 2BN6_A 2BN5_A.
Probab=25.47 E-value=27 Score=23.74 Aligned_cols=19 Identities=42% Similarity=1.034 Sum_probs=9.5
Q ss_pred CCCCCCceeeccccccchhHHHHHHHH
Q 024498 221 PASPNPTFLWGPVDAYSSSWVELYRAV 247 (267)
Q Consensus 221 ps~p~Pt~~~~~~~~~~~~~~~~~~~~ 247 (267)
|....|.| |.-|++||+.+
T Consensus 4 ~~~gq~DY--------SaqW~eYYr~~ 22 (38)
T PF09005_consen 4 PAGGQPDY--------SAQWAEYYRQI 22 (38)
T ss_dssp ----------------CCHHHHHHCCC
T ss_pred CCCCCCCH--------HHHHHHHHHHc
Confidence 44556666 88999999874
Done!