BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024499
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 33.1 bits (74), Expect = 0.16, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 61 MLARGTTTANTAPAERTPSLAPEQRPQDQFPEPPSLKLSYKCSVCNKAFSSYQALGGH-K 119
++ R T+ + A A T A PQ P SY C+VCN FS+ AL H +
Sbjct: 60 IITRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLR 119
Query: 120 ASHR 123
+ HR
Sbjct: 120 SDHR 123
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 33.1 bits (74), Expect = 0.18, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 61 MLARGTTTANTAPAERTPSLAPEQRPQDQFPEPPSLKLSYKCSVCNKAFSSYQALGGH-K 119
++ R T+ + A A T A PQ P SY C+VCN FS+ AL H +
Sbjct: 78 IITRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLR 137
Query: 120 ASHR 123
+ HR
Sbjct: 138 SDHR 141
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
Arabidopsis Thaliana Superman Protein
Length = 39
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 99 SYKCSVCNKAFSSYQALGGHKASH 122
SY CS C + F S QALGGH H
Sbjct: 6 SYTCSFCKREFRSAQALGGHMNVH 29
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 158 HECSICHKSFPTGQALGGHKRCH 180
+ CS C + F + QALGGH H
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVH 29
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 100 YKCSVCNKAFSSYQALGGHKASH 122
Y+CSVC KAFS Q+L H+ H
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIH 35
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 158 HECSICHKSFPTGQALGGHKRCH 180
++C +CHKSF G +L H+R H
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIH 35
>pdb|3TJE|L Chain L, Crystal Structure Of Fas Receptor Extracellular Domain In
Complex With Fab E09
Length = 216
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 231 GFDLNLPALPEFWSQEVESPLPAKKPKLLMHYSSL 265
G N+ P W Q+ LP K PKLL++Y++L
Sbjct: 24 GNSFNIGRYPVNWYQQ----LPGKAPKLLIYYNNL 54
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 100 YKCSVCNKAFSSYQALGGHKASH 122
YKC+ C KAF + +L H+A+H
Sbjct: 13 YKCNECGKAFRARSSLAIHQATH 35
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 100 YKCSVCNKAFSSYQALGGHKASH 122
Y C+ C KAFS Y +L H+ H
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIH 35
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 100 YKCSVCNKAFSSYQALGGHKASH 122
Y+C VC KAFS + +L H+ H
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVH 35
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 99 SYKCSVCNKAFSSYQALGGHKASH 122
S+ C VC +AF+ +AL H SH
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSH 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,647,666
Number of Sequences: 62578
Number of extensions: 204269
Number of successful extensions: 568
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 520
Number of HSP's gapped (non-prelim): 49
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)