Query 024499
Match_columns 267
No_of_seqs 382 out of 2158
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:03:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462 C2H2-type Zn-finger pr 99.9 2.2E-22 4.7E-27 171.7 3.4 107 96-207 158-265 (279)
2 KOG2462 C2H2-type Zn-finger pr 99.7 1.1E-18 2.5E-23 149.0 0.7 82 95-179 183-265 (279)
3 KOG3623 Homeobox transcription 99.6 3.5E-16 7.5E-21 147.8 0.8 84 92-178 887-971 (1007)
4 KOG3576 Ovo and related transc 99.5 6.3E-16 1.4E-20 126.5 0.3 84 94-180 112-197 (267)
5 KOG1074 Transcriptional repres 99.5 6.8E-15 1.5E-19 141.2 0.5 42 144-185 620-661 (958)
6 KOG3623 Homeobox transcription 99.3 7.7E-13 1.7E-17 125.5 3.7 47 128-177 283-329 (1007)
7 KOG1074 Transcriptional repres 99.0 2.1E-10 4.5E-15 110.8 3.3 87 97-186 603-697 (958)
8 KOG3576 Ovo and related transc 98.9 1.2E-10 2.6E-15 95.8 -0.8 87 94-183 140-238 (267)
9 PHA02768 hypothetical protein; 98.9 4.7E-10 1E-14 73.7 2.1 43 100-174 6-48 (55)
10 PHA00733 hypothetical protein 98.8 8.4E-10 1.8E-14 86.4 1.2 82 96-182 37-124 (128)
11 KOG3608 Zn finger proteins [Ge 98.7 2.1E-09 4.6E-14 95.0 0.8 87 97-188 235-322 (467)
12 PLN03086 PRLI-interacting fact 98.6 3E-08 6.5E-13 94.5 4.8 91 96-195 450-551 (567)
13 PF13465 zf-H2C2_2: Zinc-finge 98.5 6.2E-09 1.4E-13 58.5 -1.4 25 145-169 2-26 (26)
14 KOG3608 Zn finger proteins [Ge 98.5 4.2E-08 9.1E-13 86.9 0.8 87 93-182 286-377 (467)
15 KOG3993 Transcription factor ( 98.4 1.6E-07 3.5E-12 85.0 3.7 27 157-183 356-382 (500)
16 PHA02768 hypothetical protein; 98.3 4.6E-07 1E-11 59.6 2.4 37 157-195 5-41 (55)
17 PHA00732 hypothetical protein 98.3 5.1E-07 1.1E-11 64.6 2.7 37 99-137 1-38 (79)
18 COG5189 SFP1 Putative transcri 98.2 1.1E-06 2.4E-11 77.0 2.7 68 96-178 346-419 (423)
19 PLN03086 PRLI-interacting fact 98.0 3.7E-06 8.1E-11 80.4 3.3 77 98-178 477-561 (567)
20 PHA00616 hypothetical protein 97.9 2.6E-06 5.7E-11 53.4 0.7 32 157-188 1-32 (44)
21 PHA00733 hypothetical protein 97.9 3.9E-06 8.4E-11 65.8 1.7 54 96-153 70-123 (128)
22 PF00096 zf-C2H2: Zinc finger, 97.9 9.7E-06 2.1E-10 43.8 2.4 23 100-122 1-23 (23)
23 PHA00616 hypothetical protein 97.9 5.9E-06 1.3E-10 51.8 1.6 29 99-127 1-29 (44)
24 PF00096 zf-C2H2: Zinc finger, 97.9 4.7E-06 1E-10 45.1 0.9 23 158-180 1-23 (23)
25 PF13912 zf-C2H2_6: C2H2-type 97.6 4.1E-05 9E-10 43.0 2.2 25 99-123 1-25 (27)
26 PF13912 zf-C2H2_6: C2H2-type 97.6 2.5E-05 5.4E-10 43.9 1.2 26 157-182 1-26 (27)
27 PF05605 zf-Di19: Drought indu 97.5 0.00011 2.4E-09 48.6 3.5 51 99-181 2-53 (54)
28 PF13894 zf-C2H2_4: C2H2-type 97.5 4.7E-05 1E-09 41.1 1.4 24 158-181 1-24 (24)
29 PF13465 zf-H2C2_2: Zinc-finge 97.5 4.1E-05 8.9E-10 42.8 1.0 24 114-137 1-25 (26)
30 PF12756 zf-C2H2_2: C2H2 type 97.5 5.6E-05 1.2E-09 55.8 1.7 72 101-180 1-73 (100)
31 PF13894 zf-C2H2_4: C2H2-type 97.5 0.00012 2.5E-09 39.4 2.5 23 100-122 1-23 (24)
32 smart00355 ZnF_C2H2 zinc finge 97.0 0.00039 8.6E-09 37.8 1.5 25 158-182 1-25 (26)
33 KOG3993 Transcription factor ( 97.0 0.00066 1.4E-08 62.0 3.6 84 95-181 352-483 (500)
34 smart00355 ZnF_C2H2 zinc finge 96.9 0.00065 1.4E-08 36.9 1.8 24 100-123 1-24 (26)
35 PF09237 GAGA: GAGA factor; I 96.8 0.00076 1.6E-08 43.4 2.0 34 153-186 20-53 (54)
36 PF12874 zf-met: Zinc-finger o 96.6 0.0015 3.2E-08 35.8 2.1 23 100-122 1-23 (25)
37 PHA00732 hypothetical protein 96.3 0.0032 6.9E-08 45.0 2.4 46 128-182 3-49 (79)
38 PF12874 zf-met: Zinc-finger o 96.3 0.0019 4.1E-08 35.3 1.0 23 158-180 1-23 (25)
39 PF09237 GAGA: GAGA factor; I 96.1 0.0098 2.1E-07 38.3 3.7 33 95-127 20-52 (54)
40 PRK04860 hypothetical protein; 96.0 0.0038 8.3E-08 50.7 2.0 41 97-171 117-157 (160)
41 KOG1146 Homeobox protein [Gene 95.8 0.0045 9.7E-08 63.9 2.0 79 94-179 460-540 (1406)
42 PF12171 zf-C2H2_jaz: Zinc-fin 95.8 0.0049 1.1E-07 34.5 1.2 22 158-179 2-23 (27)
43 PF12171 zf-C2H2_jaz: Zinc-fin 95.7 0.0046 1E-07 34.6 0.9 23 100-122 2-24 (27)
44 PF13909 zf-H2C2_5: C2H2-type 95.6 0.0062 1.3E-07 33.0 1.1 24 158-182 1-24 (24)
45 PF13909 zf-H2C2_5: C2H2-type 95.0 0.021 4.5E-07 30.8 2.0 23 100-123 1-23 (24)
46 KOG2893 Zn finger protein [Gen 94.6 0.013 2.7E-07 50.1 0.7 45 102-180 13-58 (341)
47 COG5048 FOG: Zn-finger [Genera 94.4 0.048 1E-06 50.0 4.2 59 128-189 291-355 (467)
48 KOG1146 Homeobox protein [Gene 93.8 0.062 1.3E-06 55.9 3.9 73 98-184 1283-1356(1406)
49 PF13913 zf-C2HC_2: zinc-finge 93.7 0.036 7.8E-07 30.5 1.2 21 158-179 3-23 (25)
50 smart00451 ZnF_U1 U1-like zinc 93.3 0.07 1.5E-06 31.4 2.1 23 99-121 3-25 (35)
51 COG5048 FOG: Zn-finger [Genera 92.0 0.09 1.9E-06 48.2 2.0 71 98-171 288-367 (467)
52 PF13913 zf-C2HC_2: zinc-finge 92.0 0.12 2.6E-06 28.3 1.7 21 100-121 3-23 (25)
53 smart00451 ZnF_U1 U1-like zinc 91.9 0.11 2.4E-06 30.4 1.7 22 157-178 3-24 (35)
54 PF09538 FYDLN_acid: Protein o 90.7 0.2 4.3E-06 38.0 2.3 33 124-170 7-39 (108)
55 PF09986 DUF2225: Uncharacteri 90.4 0.089 1.9E-06 44.9 0.3 24 97-120 3-26 (214)
56 COG5189 SFP1 Putative transcri 90.3 0.077 1.7E-06 47.2 -0.2 27 94-120 393-419 (423)
57 PF12756 zf-C2H2_2: C2H2 type 90.3 0.25 5.5E-06 35.8 2.6 24 99-122 50-73 (100)
58 KOG2231 Predicted E3 ubiquitin 88.5 0.13 2.9E-06 50.5 -0.1 24 100-123 100-139 (669)
59 PRK04860 hypothetical protein; 88.1 0.3 6.6E-06 39.7 1.8 36 156-195 118-153 (160)
60 KOG4124 Putative transcription 84.4 0.33 7.1E-06 43.8 0.2 69 97-177 347-418 (442)
61 TIGR02300 FYDLN_acid conserved 83.7 0.95 2E-05 35.1 2.4 37 124-174 7-43 (129)
62 COG4049 Uncharacterized protei 83.5 0.61 1.3E-05 30.7 1.1 30 92-121 10-39 (65)
63 PF05605 zf-Di19: Drought indu 80.8 1.4 3E-05 28.7 2.1 36 157-193 2-39 (54)
64 COG1198 PriA Primosomal protei 76.7 0.8 1.7E-05 45.9 0.0 46 100-166 436-484 (730)
65 COG4530 Uncharacterized protei 76.2 1.7 3.6E-05 32.8 1.6 36 124-174 7-42 (129)
66 PF13717 zinc_ribbon_4: zinc-r 75.4 2.2 4.7E-05 25.5 1.7 13 155-167 23-35 (36)
67 PF02892 zf-BED: BED zinc fing 75.3 2.9 6.2E-05 25.9 2.3 25 96-120 13-41 (45)
68 KOG4173 Alpha-SNAP protein [In 75.2 0.57 1.2E-05 39.3 -1.2 80 97-181 77-171 (253)
69 TIGR00622 ssl1 transcription f 74.9 6.7 0.00014 29.9 4.6 79 97-181 13-105 (112)
70 smart00614 ZnF_BED BED zinc fi 73.9 1.9 4.2E-05 27.6 1.3 25 157-181 18-48 (50)
71 COG5236 Uncharacterized conser 73.8 3.2 7E-05 37.6 3.0 79 99-178 151-241 (493)
72 PF13719 zinc_ribbon_5: zinc-r 73.6 2.2 4.8E-05 25.6 1.4 15 154-168 22-36 (37)
73 KOG2785 C2H2-type Zn-finger pr 72.8 1.1 2.3E-05 41.1 -0.2 79 100-178 4-89 (390)
74 KOG2482 Predicted C2H2-type Zn 67.1 5.2 0.00011 36.3 2.8 81 99-179 195-301 (423)
75 KOG2231 Predicted E3 ubiquitin 66.3 3.3 7.1E-05 41.0 1.6 72 100-178 183-260 (669)
76 KOG4167 Predicted DNA-binding 66.2 1.7 3.8E-05 43.0 -0.3 28 96-123 789-816 (907)
77 PF15135 UPF0515: Uncharacteri 66.2 6.9 0.00015 33.9 3.3 64 93-172 106-170 (278)
78 PF05443 ROS_MUCR: ROS/MUCR tr 65.9 2.3 5.1E-05 33.4 0.4 26 156-184 71-96 (132)
79 KOG0320 Predicted E3 ubiquitin 65.6 9.3 0.0002 31.5 3.8 59 92-172 124-182 (187)
80 TIGR02605 CxxC_CxxC_SSSS putat 65.6 2.3 5.1E-05 27.3 0.3 14 99-112 5-18 (52)
81 smart00834 CxxC_CXXC_SSSS Puta 65.2 2.5 5.4E-05 25.5 0.4 14 99-112 5-18 (41)
82 PRK00464 nrdR transcriptional 64.4 3.7 8.1E-05 33.1 1.3 17 158-174 29-45 (154)
83 TIGR02098 MJ0042_CXXC MJ0042 f 64.1 3.6 7.8E-05 24.5 0.9 12 157-168 25-36 (38)
84 COG4049 Uncharacterized protei 63.8 3 6.4E-05 27.5 0.5 29 151-179 11-39 (65)
85 smart00531 TFIIE Transcription 61.3 4.8 0.0001 32.1 1.5 34 128-168 101-134 (147)
86 KOG4167 Predicted DNA-binding 60.7 1.6 3.5E-05 43.2 -1.6 28 156-183 791-818 (907)
87 KOG0978 E3 ubiquitin ligase in 60.5 1.6 3.4E-05 43.4 -1.8 23 155-177 676-698 (698)
88 COG1997 RPL43A Ribosomal prote 60.3 7 0.00015 28.3 2.0 33 126-171 35-67 (89)
89 PHA00626 hypothetical protein 60.3 8.7 0.00019 25.3 2.2 18 156-174 22-39 (59)
90 PF10571 UPF0547: Uncharacteri 58.4 8.2 0.00018 21.3 1.6 11 158-168 15-25 (26)
91 smart00734 ZnF_Rad18 Rad18-lik 58.3 6.7 0.00014 21.6 1.3 20 158-178 2-21 (26)
92 cd00350 rubredoxin_like Rubred 57.7 7.3 0.00016 22.6 1.4 10 156-165 16-25 (33)
93 PF14353 CpXC: CpXC protein 55.8 4.9 0.00011 31.0 0.6 25 156-180 37-61 (128)
94 KOG2186 Cell growth-regulating 55.5 4.5 9.7E-05 35.1 0.4 55 100-187 4-58 (276)
95 PF12013 DUF3505: Protein of u 54.2 7.5 0.00016 29.1 1.4 80 97-182 9-109 (109)
96 PF05443 ROS_MUCR: ROS/MUCR tr 53.2 9 0.00019 30.1 1.7 29 96-127 69-97 (132)
97 PRK00398 rpoP DNA-directed RNA 53.1 9.6 0.00021 23.8 1.5 11 100-110 4-14 (46)
98 PF06524 NOA36: NOA36 protein; 52.4 24 0.00052 30.9 4.3 93 95-188 138-240 (314)
99 PF15269 zf-C2H2_7: Zinc-finge 51.1 19 0.0004 22.7 2.5 27 96-122 17-43 (54)
100 COG4957 Predicted transcriptio 50.3 8.2 0.00018 30.3 1.0 26 158-186 77-102 (148)
101 PF04959 ARS2: Arsenite-resist 48.7 14 0.0003 31.6 2.2 27 96-122 74-100 (214)
102 PRK14873 primosome assembly pr 48.2 6.8 0.00015 39.2 0.4 48 96-166 379-431 (665)
103 KOG3408 U1-like Zn-finger-cont 47.9 12 0.00027 28.7 1.6 26 96-121 54-79 (129)
104 KOG2186 Cell growth-regulating 47.6 7.2 0.00016 33.9 0.4 38 158-197 4-41 (276)
105 COG2888 Predicted Zn-ribbon RN 47.0 17 0.00037 24.3 2.0 10 156-165 49-58 (61)
106 cd00729 rubredoxin_SM Rubredox 45.9 14 0.00029 21.7 1.3 9 100-108 3-11 (34)
107 KOG2785 C2H2-type Zn-finger pr 45.4 7.9 0.00017 35.6 0.3 70 96-178 163-241 (390)
108 PF12013 DUF3505: Protein of u 45.1 18 0.00039 27.0 2.2 24 100-123 81-108 (109)
109 PF07754 DUF1610: Domain of un 44.8 24 0.00052 19.1 2.0 10 156-165 15-24 (24)
110 PF01363 FYVE: FYVE zinc finge 44.6 11 0.00024 25.5 1.0 10 101-110 11-20 (69)
111 COG1655 Uncharacterized protei 44.4 5.9 0.00013 34.0 -0.6 24 97-120 17-40 (267)
112 PF09723 Zn-ribbon_8: Zinc rib 43.2 11 0.00025 23.1 0.7 15 99-113 5-19 (42)
113 cd00065 FYVE FYVE domain; Zinc 42.8 18 0.00038 23.4 1.7 11 158-168 19-29 (57)
114 COG1592 Rubrerythrin [Energy p 42.6 16 0.00035 29.8 1.7 11 154-164 146-156 (166)
115 PF07975 C1_4: TFIIH C1-like d 42.5 8.9 0.00019 24.9 0.1 27 97-123 19-45 (51)
116 PF08790 zf-LYAR: LYAR-type C2 42.1 10 0.00022 21.4 0.3 24 158-182 1-24 (28)
117 PF09845 DUF2072: Zn-ribbon co 41.8 12 0.00027 29.2 0.9 15 157-171 1-15 (131)
118 PRK14890 putative Zn-ribbon RN 41.8 28 0.0006 23.3 2.4 10 156-165 47-56 (59)
119 smart00659 RPOLCX RNA polymera 41.1 18 0.00038 22.7 1.3 12 100-111 3-14 (44)
120 PF04959 ARS2: Arsenite-resist 41.1 8.1 0.00018 32.9 -0.2 26 154-179 74-99 (214)
121 PF09986 DUF2225: Uncharacteri 39.9 8.6 0.00019 32.7 -0.3 25 155-179 3-27 (214)
122 COG1571 Predicted DNA-binding 39.3 22 0.00048 33.4 2.2 35 125-173 349-383 (421)
123 smart00154 ZnF_AN1 AN1-like Zi 38.6 16 0.00034 22.2 0.8 15 99-113 12-26 (39)
124 KOG2482 Predicted C2H2-type Zn 38.3 21 0.00046 32.5 1.9 23 157-179 195-217 (423)
125 cd00924 Cyt_c_Oxidase_Vb Cytoc 37.9 14 0.00029 27.5 0.5 20 149-169 72-91 (97)
126 KOG2071 mRNA cleavage and poly 37.8 17 0.00038 35.4 1.4 29 155-183 416-444 (579)
127 KOG2071 mRNA cleavage and poly 37.0 20 0.00043 35.0 1.6 28 96-123 415-442 (579)
128 PF10013 DUF2256: Uncharacteri 36.6 28 0.00061 21.6 1.7 15 159-173 10-24 (42)
129 TIGR00622 ssl1 transcription f 36.6 31 0.00068 26.2 2.3 27 97-123 79-105 (112)
130 KOG0696 Serine/threonine prote 36.1 18 0.00038 34.3 1.1 58 96-164 70-128 (683)
131 PRK00564 hypA hydrogenase nick 36.1 32 0.00068 26.3 2.3 44 51-112 40-84 (117)
132 KOG1280 Uncharacterized conser 36.0 30 0.00065 31.6 2.4 36 98-133 78-116 (381)
133 PRK06266 transcription initiat 35.8 23 0.0005 29.2 1.7 12 157-168 136-147 (178)
134 COG1773 Rubredoxin [Energy pro 35.8 18 0.00038 23.9 0.7 13 99-111 3-15 (55)
135 smart00064 FYVE Protein presen 35.7 25 0.00054 23.6 1.6 11 100-110 11-21 (68)
136 KOG3408 U1-like Zn-finger-cont 35.3 19 0.0004 27.8 0.9 26 154-179 54-79 (129)
137 TIGR00373 conserved hypothetic 35.1 30 0.00064 27.9 2.2 28 128-167 111-138 (158)
138 COG4957 Predicted transcriptio 34.3 9.5 0.0002 29.9 -0.8 25 100-127 77-101 (148)
139 KOG2636 Splicing factor 3a, su 33.5 24 0.00052 33.3 1.5 29 150-178 394-423 (497)
140 PF10276 zf-CHCC: Zinc-finger 32.8 19 0.00042 22.0 0.6 15 153-167 25-39 (40)
141 PF13878 zf-C2H2_3: zinc-finge 32.5 39 0.00084 20.7 1.9 24 100-123 14-39 (41)
142 COG3364 Zn-ribbon containing p 32.0 23 0.0005 26.4 0.9 16 157-172 2-17 (112)
143 PTZ00255 60S ribosomal protein 31.8 22 0.00048 25.9 0.8 17 154-170 51-67 (90)
144 TIGR00244 transcriptional regu 31.8 29 0.00063 27.7 1.5 13 158-170 29-41 (147)
145 COG1327 Predicted transcriptio 31.4 31 0.00067 27.7 1.6 11 159-169 30-40 (156)
146 PTZ00303 phosphatidylinositol 31.3 17 0.00036 36.8 0.1 34 100-139 461-494 (1374)
147 COG1996 RPC10 DNA-directed RNA 31.2 27 0.00059 22.4 1.1 12 98-109 5-16 (49)
148 TIGR00595 priA primosomal prot 31.1 15 0.00033 35.4 -0.1 48 100-166 214-262 (505)
149 PF01428 zf-AN1: AN1-like Zinc 31.0 20 0.00043 22.1 0.4 16 98-113 12-27 (43)
150 COG0068 HypF Hydrogenase matur 30.7 12 0.00027 37.2 -0.8 56 102-166 126-182 (750)
151 COG3357 Predicted transcriptio 30.5 35 0.00076 24.9 1.6 25 128-165 60-84 (97)
152 PLN02294 cytochrome c oxidase 30.3 24 0.00051 28.9 0.8 17 96-112 138-154 (174)
153 PF01155 HypA: Hydrogenase exp 30.1 23 0.0005 26.9 0.7 46 51-114 40-85 (113)
154 PF07282 OrfB_Zn_ribbon: Putat 30.1 42 0.00091 22.6 2.0 17 154-170 43-59 (69)
155 PF09416 UPF1_Zn_bind: RNA hel 29.7 58 0.0013 26.2 2.9 50 97-165 12-68 (152)
156 PRK09678 DNA-binding transcrip 29.4 24 0.00053 24.6 0.7 21 153-173 23-45 (72)
157 TIGR00280 L37a ribosomal prote 29.4 21 0.00046 26.1 0.4 17 155-171 51-67 (91)
158 smart00661 RPOL9 RNA polymeras 29.3 53 0.0011 20.6 2.2 16 156-171 19-34 (52)
159 KOG4377 Zn-finger protein [Gen 29.1 60 0.0013 30.4 3.3 80 96-183 268-371 (480)
160 COG3677 Transposase and inacti 28.8 39 0.00084 26.3 1.8 16 154-169 50-65 (129)
161 KOG0717 Molecular chaperone (D 28.1 35 0.00076 32.4 1.6 22 100-121 293-314 (508)
162 PF07295 DUF1451: Protein of u 26.9 29 0.00063 27.7 0.8 9 157-165 130-138 (146)
163 KOG0717 Molecular chaperone (D 26.5 32 0.0007 32.6 1.1 21 158-178 293-313 (508)
164 PF03811 Zn_Tnp_IS1: InsA N-te 25.9 68 0.0015 19.1 2.1 19 145-163 17-35 (36)
165 PF13451 zf-trcl: Probable zin 25.9 31 0.00068 22.1 0.7 17 97-113 2-18 (49)
166 COG5188 PRP9 Splicing factor 3 25.2 39 0.00084 31.0 1.3 29 150-178 367-396 (470)
167 PF01286 XPA_N: XPA protein N- 24.9 39 0.00085 19.9 0.9 13 128-140 5-17 (34)
168 COG5151 SSL1 RNA polymerase II 24.6 84 0.0018 28.4 3.2 49 128-181 364-412 (421)
169 PLN02748 tRNA dimethylallyltra 24.4 45 0.00097 32.0 1.7 25 97-121 416-441 (468)
170 KOG2636 Splicing factor 3a, su 24.2 47 0.001 31.4 1.7 26 95-120 397-423 (497)
171 PF11931 DUF3449: Domain of un 24.1 26 0.00056 29.5 0.0 30 152-181 96-128 (196)
172 PRK12380 hydrogenase nickel in 23.9 40 0.00087 25.5 1.1 43 51-111 40-82 (113)
173 PRK03976 rpl37ae 50S ribosomal 23.9 29 0.00064 25.3 0.3 16 155-170 52-67 (90)
174 PRK04023 DNA polymerase II lar 23.5 53 0.0012 34.4 2.1 11 98-108 625-635 (1121)
175 PF06397 Desulfoferrod_N: Desu 23.2 38 0.00082 20.3 0.6 13 97-109 4-16 (36)
176 PRK00762 hypA hydrogenase nick 22.7 85 0.0018 24.2 2.7 43 51-112 40-82 (124)
177 COG5112 UFD2 U1-like Zn-finger 22.4 46 0.001 25.0 1.1 26 96-121 52-77 (126)
178 KOG0782 Predicted diacylglycer 22.3 46 0.00099 32.6 1.3 9 52-60 108-116 (1004)
179 TIGR00686 phnA alkylphosphonat 22.2 62 0.0013 24.4 1.7 31 127-171 3-33 (109)
180 PRK03564 formate dehydrogenase 21.9 62 0.0013 29.2 2.0 13 96-108 184-196 (309)
181 TIGR00143 hypF [NiFe] hydrogen 21.5 30 0.00066 34.9 -0.1 56 102-167 93-150 (711)
182 COG5236 Uncharacterized conser 21.4 1.6E+02 0.0035 27.0 4.5 69 101-179 222-303 (493)
183 PRK10220 hypothetical protein; 21.3 83 0.0018 23.8 2.2 31 127-171 4-34 (111)
184 TIGR00100 hypA hydrogenase nic 21.3 51 0.0011 25.0 1.2 19 51-69 40-58 (115)
185 PF00301 Rubredoxin: Rubredoxi 21.3 47 0.001 21.1 0.8 12 100-111 2-13 (47)
186 COG5112 UFD2 U1-like Zn-finger 21.0 34 0.00073 25.7 0.1 25 154-178 52-76 (126)
187 COG5151 SSL1 RNA polymerase II 20.6 1.2E+02 0.0027 27.3 3.5 27 96-122 385-411 (421)
188 KOG2807 RNA polymerase II tran 20.5 1.2E+02 0.0026 27.6 3.5 66 99-180 290-368 (378)
189 PRK12496 hypothetical protein; 20.4 66 0.0014 26.1 1.7 11 128-138 129-139 (164)
190 PRK00432 30S ribosomal protein 20.2 75 0.0016 20.4 1.6 12 156-167 36-47 (50)
191 PF14446 Prok-RING_1: Prokaryo 20.1 81 0.0017 20.7 1.7 12 157-168 21-32 (54)
No 1
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.85 E-value=2.2e-22 Score=171.65 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=98.1
Q ss_pred CCcceeccccccccCChHHHHHhHHhhCCCCC-CCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhhHH
Q 024499 96 LKLSYKCSVCNKAFSSYQALGGHKASHRKNAA-DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQALG 174 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L~ 174 (267)
..+.|.|++|+|+|.+..+|+.|+++|+ .+ .|.+|||.|.+.+ .|+-|+|+|+|||||.|..|+|.|..+++|+
T Consensus 158 s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPW---LLQGHiRTHTGEKPF~C~hC~kAFADRSNLR 232 (279)
T KOG2462|consen 158 SKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPW---LLQGHIRTHTGEKPFSCPHCGKAFADRSNLR 232 (279)
T ss_pred ccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchH---HhhcccccccCCCCccCCcccchhcchHHHH
Confidence 4777999999999999999999999997 34 8999999999999 9999999999999999999999999999999
Q ss_pred hhhhhcccCcCCCCCCCCCCCCCCCCCCCCccc
Q 024499 175 GHKRCHYEGGINNNNNNSSSNNNKSNNNSDVVT 207 (267)
Q Consensus 175 ~H~r~H~~~~~~~~~~~~ss~~~~~~~~~~~~~ 207 (267)
.||++|.+.+.+.|..|..++...+.++-....
T Consensus 233 AHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 233 AHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred HHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence 999999999999999999988877665554443
No 2
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.71 E-value=1.1e-18 Score=148.97 Aligned_cols=82 Identities=28% Similarity=0.437 Sum_probs=78.3
Q ss_pred CCCcceeccccccccCChHHHHHhHHhhCCCCC-CCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhhH
Q 024499 95 SLKLSYKCSVCNKAFSSYQALGGHKASHRKNAA-DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQAL 173 (267)
Q Consensus 95 ~g~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L 173 (267)
+..-+++|.+|||.|.+..-|++|+|+|+|||| .|..|++.|...+ +|+.||.+|.+.|.|+|..|+|.|..++.|
T Consensus 183 TH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRS---NLRAHmQTHS~~K~~qC~~C~KsFsl~SyL 259 (279)
T KOG2462|consen 183 THTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRS---NLRAHMQTHSDVKKHQCPRCGKSFALKSYL 259 (279)
T ss_pred ccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchH---HHHHHHHhhcCCccccCcchhhHHHHHHHH
Confidence 455789999999999999999999999999999 9999999999999 999999999999999999999999999999
Q ss_pred Hhhhhh
Q 024499 174 GGHKRC 179 (267)
Q Consensus 174 ~~H~r~ 179 (267)
.+|...
T Consensus 260 nKH~ES 265 (279)
T KOG2462|consen 260 NKHSES 265 (279)
T ss_pred HHhhhh
Confidence 999764
No 3
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.57 E-value=3.5e-16 Score=147.79 Aligned_cols=84 Identities=21% Similarity=0.368 Sum_probs=79.8
Q ss_pred CCCCCCcceeccccccccCChHHHHHhHHhhCCCCC-CCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCCh
Q 024499 92 EPPSLKLSYKCSVCNKAFSSYQALGGHKASHRKNAA-DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTG 170 (267)
Q Consensus 92 ~~~~g~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~ 170 (267)
.....+..|.|+.|+|+|...+.|.+|+--|+|.++ .|.+|.|.|..+. +|..|+|.|.|+|||+|+.|+|.|...
T Consensus 887 ~~kte~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKH---HLtEHkRLHSGEKPfQCdKClKRFSHS 963 (1007)
T KOG3623|consen 887 HAKTEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKH---HLTEHKRLHSGEKPFQCDKCLKRFSHS 963 (1007)
T ss_pred cccCccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhh---hhhhhhhhccCCCcchhhhhhhhcccc
Confidence 334567889999999999999999999999999999 9999999999999 999999999999999999999999999
Q ss_pred hhHHhhhh
Q 024499 171 QALGGHKR 178 (267)
Q Consensus 171 ~~L~~H~r 178 (267)
....+||-
T Consensus 964 GSYSQHMN 971 (1007)
T KOG3623|consen 964 GSYSQHMN 971 (1007)
T ss_pred cchHhhhc
Confidence 99999996
No 4
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.55 E-value=6.3e-16 Score=126.50 Aligned_cols=84 Identities=24% Similarity=0.382 Sum_probs=78.3
Q ss_pred CCCCcceeccccccccCChHHHHHhHHhhCCCCC-CCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhh
Q 024499 94 PSLKLSYKCSVCNKAFSSYQALGGHKASHRKNAA-DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQA 172 (267)
Q Consensus 94 ~~g~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~ 172 (267)
..+...|.|.+|+|.|....-|.+|++-|...+. .|..||+.|.... .|++|+++|+|.+||+|..|+|.|+++..
T Consensus 112 ssd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtf---dlkrh~rthtgvrpykc~~c~kaftqrcs 188 (267)
T KOG3576|consen 112 SSDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTF---DLKRHTRTHTGVRPYKCSLCEKAFTQRCS 188 (267)
T ss_pred CCCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchh---hhhhhhccccCccccchhhhhHHHHhhcc
Confidence 3456779999999999999999999999998877 9999999999999 99999999999999999999999999999
Q ss_pred HHhhhh-hc
Q 024499 173 LGGHKR-CH 180 (267)
Q Consensus 173 L~~H~r-~H 180 (267)
|..|.+ +|
T Consensus 189 leshl~kvh 197 (267)
T KOG3576|consen 189 LESHLKKVH 197 (267)
T ss_pred HHHHHHHHc
Confidence 999987 45
No 5
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.47 E-value=6.8e-15 Score=141.15 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=38.4
Q ss_pred CcccccccCCCCCceeCccccccCCChhhHHhhhhhcccCcC
Q 024499 144 PPSATASSGSGGRTHECSICHKSFPTGQALGGHKRCHYEGGI 185 (267)
Q Consensus 144 ~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~~ 185 (267)
.|+.|.++|+|||||+|.|||+.|+++.+|+.||-+|....+
T Consensus 620 aLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~ 661 (958)
T KOG1074|consen 620 ALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPP 661 (958)
T ss_pred hhhhhhhcccCcCccccccccchhccccchhhcccccccCcc
Confidence 678899999999999999999999999999999999976543
No 6
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.32 E-value=7.7e-13 Score=125.46 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhhHHhhh
Q 024499 128 DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQALGGHK 177 (267)
Q Consensus 128 ~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L~~H~ 177 (267)
.|..|+|.|..+. +|+.|+|||.|+|||+|+.|+|.|.....+..||
T Consensus 283 KCtECgKAFKfKH---HLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHm 329 (1007)
T KOG3623|consen 283 KCTECGKAFKFKH---HLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHM 329 (1007)
T ss_pred cccccchhhhhHH---HHHhhheeecCCCCcCCcccccccccCCcccccc
Confidence 3444555555444 5555555555555555555555555444444444
No 7
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=98.99 E-value=2.1e-10 Score=110.78 Aligned_cols=87 Identities=24% Similarity=0.362 Sum_probs=79.3
Q ss_pred CcceeccccccccCChHHHHHhHHhhCCCCC-CCCCCCCCCCCCCCCCCcccccccCCCC----CceeCc---cccccCC
Q 024499 97 KLSYKCSVCNKAFSSYQALGGHKASHRKNAA-DASASPNAAAASDVTPPPSATASSGSGG----RTHECS---ICHKSFP 168 (267)
Q Consensus 97 ~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~c~~C~~~f~~~~~~~~L~~H~~~h~g~----kp~~C~---~C~k~F~ 168 (267)
--|-+|-+|-++...+.+|+.|.|+|+++++ .|.+|++.|..+. +|+.|+.+|... -.|.|+ +|.+.|.
T Consensus 603 TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkG---NLkaH~~vHka~p~~R~q~ScP~~~ic~~kft 679 (958)
T KOG1074|consen 603 TDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKG---NLKAHMSVHKAKPPARVQFSCPSTFICQKKFT 679 (958)
T ss_pred CCccceeeeeecccchhhhhhhhhcccCcCccccccccchhcccc---chhhcccccccCccccccccCCchhhhccccc
Confidence 3478999999999999999999999999999 9999999999999 999999999754 358999 9999999
Q ss_pred ChhhHHhhhhhcccCcCC
Q 024499 169 TGQALGGHKRCHYEGGIN 186 (267)
Q Consensus 169 ~~~~L~~H~r~H~~~~~~ 186 (267)
..-.|.+|+|+|.++...
T Consensus 680 n~V~lpQhIriH~~~~~s 697 (958)
T KOG1074|consen 680 NAVTLPQHIRIHLGGQIS 697 (958)
T ss_pred ccccccceEEeecCCCCC
Confidence 999999999999965433
No 8
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=98.93 E-value=1.2e-10 Score=95.76 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=76.6
Q ss_pred CCCCcceeccccccccCChHHHHHhHHhhCCCCC-CCCCCCCCCCCCCCCCCcccccc-cCC----------CCCceeCc
Q 024499 94 PSLKLSYKCSVCNKAFSSYQALGGHKASHRKNAA-DASASPNAAAASDVTPPPSATAS-SGS----------GGRTHECS 161 (267)
Q Consensus 94 ~~g~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~c~~C~~~f~~~~~~~~L~~H~~-~h~----------g~kp~~C~ 161 (267)
++..+.|.|..|||.|..-..|++|+|+|++.++ .|..|++.|.+.. .|..|.+ +|. ..|.|.|.
T Consensus 140 h~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrc---sleshl~kvhgv~~~yaykerr~kl~vce 216 (267)
T KOG3576|consen 140 HSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRC---SLESHLKKVHGVQHQYAYKERRAKLYVCE 216 (267)
T ss_pred ccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhc---cHHHHHHHHcCchHHHHHHHhhhheeeec
Confidence 4566789999999999999999999999999999 9999999999999 9988864 443 25789999
Q ss_pred cccccCCChhhHHhhhhhcccC
Q 024499 162 ICHKSFPTGQALGGHKRCHYEG 183 (267)
Q Consensus 162 ~C~k~F~~~~~L~~H~r~H~~~ 183 (267)
.||.+-.+...+..|++.|+..
T Consensus 217 dcg~t~~~~e~~~~h~~~~hp~ 238 (267)
T KOG3576|consen 217 DCGYTSERPEVYYLHLKLHHPF 238 (267)
T ss_pred ccCCCCCChhHHHHHHHhcCCC
Confidence 9999999999999999988754
No 9
>PHA02768 hypothetical protein; Provisional
Probab=98.92 E-value=4.7e-10 Score=73.69 Aligned_cols=43 Identities=16% Similarity=0.358 Sum_probs=37.0
Q ss_pred eeccccccccCChHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhhHH
Q 024499 100 YKCSVCNKAFSSYQALGGHKASHRKNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQALG 174 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L~ 174 (267)
|+|+.|||.|.+.++|..|+++|+ ++|+|..|++.|.+.+.|.
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~--------------------------------k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN--------------------------------TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC--------------------------------CcccCCcccceecccceeE
Confidence 899999999999999999999983 5778888888888777664
No 10
>PHA00733 hypothetical protein
Probab=98.84 E-value=8.4e-10 Score=86.45 Aligned_cols=82 Identities=11% Similarity=0.041 Sum_probs=68.5
Q ss_pred CCcceeccccccccCChHHHHHh--HHh---hCCCCC-CCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCC
Q 024499 96 LKLSYKCSVCNKAFSSYQALGGH--KAS---HRKNAA-DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPT 169 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~~~L~~H--~~~---H~~~k~-~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~ 169 (267)
..+++.|.+|.+.|.....|..| .+. +...++ .|..|++.|.... .|..|++.| +++|.|.+|++.|..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s---~L~~H~r~h--~~~~~C~~CgK~F~~ 111 (128)
T PHA00733 37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSV---SLKQHIRYT--EHSKVCPVCGKEFRN 111 (128)
T ss_pred hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHH---HHHHHHhcC--CcCccCCCCCCccCC
Confidence 56789999999999998888776 222 223455 9999999999999 999999987 467999999999999
Q ss_pred hhhHHhhhhhccc
Q 024499 170 GQALGGHKRCHYE 182 (267)
Q Consensus 170 ~~~L~~H~r~H~~ 182 (267)
...|..|++..++
T Consensus 112 ~~sL~~H~~~~h~ 124 (128)
T PHA00733 112 TDSTLDHVCKKHN 124 (128)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999986654
No 11
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=98.74 E-value=2.1e-09 Score=95.01 Aligned_cols=87 Identities=16% Similarity=0.291 Sum_probs=69.8
Q ss_pred CcceeccccccccCChHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCCCccccccc-CCCCCceeCccccccCCChhhHHh
Q 024499 97 KLSYKCSVCNKAFSSYQALGGHKASHRKNAADASASPNAAAASDVTPPPSATASS-GSGGRTHECSICHKSFPTGQALGG 175 (267)
Q Consensus 97 ~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~~c~~C~~~f~~~~~~~~L~~H~~~-h~g~kp~~C~~C~k~F~~~~~L~~ 175 (267)
..+|+|..|.|.|.....|..|++.|..- -.|+.|+....... .|.+|++. |...|||+|+.|.+.|.+.+.|.+
T Consensus 235 ~n~fqC~~C~KrFaTeklL~~Hv~rHvn~-ykCplCdmtc~~~s---sL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~k 310 (467)
T KOG3608|consen 235 TNSFQCAQCFKRFATEKLLKSHVVRHVNC-YKCPLCDMTCSSAS---SLTTHIRYRHSKDKPFKCDECDTRCVRESDLAK 310 (467)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHhhhc-ccccccccCCCChH---HHHHHHHhhhccCCCccccchhhhhccHHHHHH
Confidence 44688888888888888888888877432 26788888888777 89999875 888999999999999999999999
Q ss_pred hhhhcccCcCCCC
Q 024499 176 HKRCHYEGGINNN 188 (267)
Q Consensus 176 H~r~H~~~~~~~~ 188 (267)
|..+|. +..|.|
T Consensus 311 H~~~HS-~~~y~C 322 (467)
T KOG3608|consen 311 HVQVHS-KTVYQC 322 (467)
T ss_pred HHHhcc-ccceec
Confidence 988886 555544
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.63 E-value=3e-08 Score=94.55 Aligned_cols=91 Identities=13% Similarity=0.183 Sum_probs=74.9
Q ss_pred CCcceeccccccccCChHHHHHhHHhhCCCCC-CCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCC-----
Q 024499 96 LKLSYKCSVCNKAFSSYQALGGHKASHRKNAA-DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPT----- 169 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~----- 169 (267)
.++.+.|+.|++.|. ...|..|+..|+ ++ .|. |++.+ ... .|..|+.+|...|++.|.+|++.|..
T Consensus 450 l~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~---~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~ 521 (567)
T PLN03086 450 AKNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKE---QMVQHQASTCPLRLITCRFCGDMVQAGGSAM 521 (567)
T ss_pred cccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chh---HHHhhhhccCCCCceeCCCCCCccccCcccc
Confidence 456689999999996 688999999985 44 787 99755 446 89999999999999999999999963
Q ss_pred -----hhhHHhhhhhcccCcCCCCCCCCCCC
Q 024499 170 -----GQALGGHKRCHYEGGINNNNNNSSSN 195 (267)
Q Consensus 170 -----~~~L~~H~r~H~~~~~~~~~~~~ss~ 195 (267)
...|..|..++ +.+...|..|+...
T Consensus 522 d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~V 551 (567)
T PLN03086 522 DVRDRLRGMSEHESIC-GSRTAPCDSCGRSV 551 (567)
T ss_pred chhhhhhhHHHHHHhc-CCcceEccccCCee
Confidence 34899999986 88888888776543
No 13
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.54 E-value=6.2e-09 Score=58.46 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=21.3
Q ss_pred cccccccCCCCCceeCccccccCCC
Q 024499 145 PSATASSGSGGRTHECSICHKSFPT 169 (267)
Q Consensus 145 L~~H~~~h~g~kp~~C~~C~k~F~~ 169 (267)
|.+|+++|+|+|||+|++|++.|.+
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEESS
T ss_pred HHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 5667777799999999999999964
No 14
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=98.46 E-value=4.2e-08 Score=86.93 Aligned_cols=87 Identities=17% Similarity=0.257 Sum_probs=71.2
Q ss_pred CCCCCcceeccccccccCChHHHHHhHHhhCCCCCCCCC--CCCCCCCCCCCCCcccccccCC-CC--CceeCccccccC
Q 024499 93 PPSLKLSYKCSVCNKAFSSYQALGGHKASHRKNAADASA--SPNAAAASDVTPPPSATASSGS-GG--RTHECSICHKSF 167 (267)
Q Consensus 93 ~~~g~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~~c~~--C~~~f~~~~~~~~L~~H~~~h~-g~--kp~~C~~C~k~F 167 (267)
.++..+||+|+.|++.|.+...|..|...|.+....|.. |...|...- .+++|++-+. |. -+|.|..|.+.|
T Consensus 286 rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~---q~~~H~~evhEg~np~~Y~CH~Cdr~f 362 (467)
T KOG3608|consen 286 RHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYT---QMRRHFLEVHEGNNPILYACHCCDRFF 362 (467)
T ss_pred hhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHH---HHHHHHHHhccCCCCCceeeecchhhh
Confidence 356789999999999999999999999999855557765 888887777 7888877644 43 469999999999
Q ss_pred CChhhHHhhhhhccc
Q 024499 168 PTGQALGGHKRCHYE 182 (267)
Q Consensus 168 ~~~~~L~~H~r~H~~ 182 (267)
+++.+|..|++.-++
T Consensus 363 t~G~~L~~HL~kkH~ 377 (467)
T KOG3608|consen 363 TSGKSLSAHLMKKHG 377 (467)
T ss_pred ccchhHHHHHHHhhc
Confidence 999999999865443
No 15
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.43 E-value=1.6e-07 Score=85.03 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=24.7
Q ss_pred ceeCccccccCCChhhHHhhhhhcccC
Q 024499 157 THECSICHKSFPTGQALGGHKRCHYEG 183 (267)
Q Consensus 157 p~~C~~C~k~F~~~~~L~~H~r~H~~~ 183 (267)
.|.|.+|+|.|.+...|++|+.+|...
T Consensus 356 i~~C~~C~KkFrRqAYLrKHqlthq~~ 382 (500)
T KOG3993|consen 356 IFSCHTCGKKFRRQAYLRKHQLTHQRA 382 (500)
T ss_pred eeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence 699999999999999999999888754
No 16
>PHA02768 hypothetical protein; Provisional
Probab=98.28 E-value=4.6e-07 Score=59.62 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.5
Q ss_pred ceeCccccccCCChhhHHhhhhhcccCcCCCCCCCCCCC
Q 024499 157 THECSICHKSFPTGQALGGHKRCHYEGGINNNNNNSSSN 195 (267)
Q Consensus 157 p~~C~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~~~ss~ 195 (267)
-|+|++||+.|.+.++|..|+|+|+ +.+.+..|...+
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f 41 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRIS 41 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCccccee
Confidence 4899999999999999999999999 344454444433
No 17
>PHA00732 hypothetical protein
Probab=98.28 E-value=5.1e-07 Score=64.61 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=27.5
Q ss_pred ceeccccccccCChHHHHHhHHh-hCCCCCCCCCCCCCCC
Q 024499 99 SYKCSVCNKAFSSYQALGGHKAS-HRKNAADASASPNAAA 137 (267)
Q Consensus 99 p~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~c~~C~~~f~ 137 (267)
||.|..|++.|.+...|..|++. |.+. .|..|++.|.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~~--~C~~CgKsF~ 38 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHTLT--KCPVCNKSYR 38 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccCCC--ccCCCCCEeC
Confidence 58999999999999999999984 5321 3445555444
No 18
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=98.15 E-value=1.1e-06 Score=76.99 Aligned_cols=68 Identities=24% Similarity=0.468 Sum_probs=50.4
Q ss_pred CCcceeccc--cccccCChHHHHHhHHh-hCCCCC---CCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCC
Q 024499 96 LKLSYKCSV--CNKAFSSYQALGGHKAS-HRKNAA---DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPT 169 (267)
Q Consensus 96 g~~p~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~---~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~ 169 (267)
++|||+|++ |.|.|+..-.|+.|+.- |...+. ..++-...| -...|||+|.+|+|.|+.
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F---------------~~~~KPYrCevC~KRYKN 410 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIF---------------SAKDKPYRCEVCDKRYKN 410 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccc---------------cccCCceeccccchhhcc
Confidence 459999987 99999999999999873 533322 111112222 245699999999999999
Q ss_pred hhhHHhhhh
Q 024499 170 GQALGGHKR 178 (267)
Q Consensus 170 ~~~L~~H~r 178 (267)
...|+-|+.
T Consensus 411 lNGLKYHr~ 419 (423)
T COG5189 411 LNGLKYHRK 419 (423)
T ss_pred Cccceeccc
Confidence 999988854
No 19
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.01 E-value=3.7e-06 Score=80.41 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=62.4
Q ss_pred cceeccccccccCChHHHHHhHHhhCCCCC-CCCCCCCCCCCCC-------CCCCcccccccCCCCCceeCccccccCCC
Q 024499 98 LSYKCSVCNKAFSSYQALGGHKASHRKNAA-DASASPNAAAASD-------VTPPPSATASSGSGGRTHECSICHKSFPT 169 (267)
Q Consensus 98 ~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~c~~C~~~f~~~~-------~~~~L~~H~~~h~g~kp~~C~~C~k~F~~ 169 (267)
++|.|. |++.| .+..|..|+.+|...++ .|..|++.|.... ....|..|+..+ |.+++.|..||+.|..
T Consensus 477 kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrl 553 (567)
T PLN03086 477 EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVML 553 (567)
T ss_pred CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeee
Confidence 789999 99866 66899999999999988 9999999985321 011678898886 9999999999999977
Q ss_pred hhhHHhhhh
Q 024499 170 GQALGGHKR 178 (267)
Q Consensus 170 ~~~L~~H~r 178 (267)
+. |..|+.
T Consensus 554 rd-m~~H~~ 561 (567)
T PLN03086 554 KE-MDIHQI 561 (567)
T ss_pred hh-HHHHHH
Confidence 64 566764
No 20
>PHA00616 hypothetical protein
Probab=97.94 E-value=2.6e-06 Score=53.39 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=28.8
Q ss_pred ceeCccccccCCChhhHHhhhhhcccCcCCCC
Q 024499 157 THECSICHKSFPTGQALGGHKRCHYEGGINNN 188 (267)
Q Consensus 157 p~~C~~C~k~F~~~~~L~~H~r~H~~~~~~~~ 188 (267)
||+|..||+.|...+.|..|++.|+++++..+
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~ 32 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL 32 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence 68999999999999999999999999876654
No 21
>PHA00733 hypothetical protein
Probab=97.94 E-value=3.9e-06 Score=65.78 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=46.3
Q ss_pred CCcceeccccccccCChHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCCCcccccccCC
Q 024499 96 LKLSYKCSVCNKAFSSYQALGGHKASHRKNAADASASPNAAAASDVTPPPSATASSGS 153 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~ 153 (267)
++++|.|+.|++.|.+...|..|++.|.. ...|..|++.|.... .|..|+....
T Consensus 70 ~~kPy~C~~Cgk~Fss~s~L~~H~r~h~~-~~~C~~CgK~F~~~~---sL~~H~~~~h 123 (128)
T PHA00733 70 AVSPYVCPLCLMPFSSSVSLKQHIRYTEH-SKVCPVCGKEFRNTD---STLDHVCKKH 123 (128)
T ss_pred CCCCccCCCCCCcCCCHHHHHHHHhcCCc-CccCCCCCCccCCHH---HHHHHHHHhc
Confidence 57889999999999999999999998732 239999999999988 8988876544
No 22
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.89 E-value=9.7e-06 Score=43.79 Aligned_cols=23 Identities=48% Similarity=0.914 Sum_probs=21.8
Q ss_pred eeccccccccCChHHHHHhHHhh
Q 024499 100 YKCSVCNKAFSSYQALGGHKASH 122 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~H 122 (267)
|+|.+|++.|.....|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 79999999999999999999876
No 23
>PHA00616 hypothetical protein
Probab=97.89 E-value=5.9e-06 Score=51.82 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=25.8
Q ss_pred ceeccccccccCChHHHHHhHHhhCCCCC
Q 024499 99 SYKCSVCNKAFSSYQALGGHKASHRKNAA 127 (267)
Q Consensus 99 p~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 127 (267)
||+|..||+.|..++.|..|++.|+++++
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~ 29 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNK 29 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCc
Confidence 69999999999999999999999965544
No 24
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.88 E-value=4.7e-06 Score=45.07 Aligned_cols=23 Identities=43% Similarity=0.769 Sum_probs=21.9
Q ss_pred eeCccccccCCChhhHHhhhhhc
Q 024499 158 HECSICHKSFPTGQALGGHKRCH 180 (267)
Q Consensus 158 ~~C~~C~k~F~~~~~L~~H~r~H 180 (267)
|+|.+|++.|.+...|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 78999999999999999999986
No 25
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.63 E-value=4.1e-05 Score=42.98 Aligned_cols=25 Identities=48% Similarity=0.844 Sum_probs=23.5
Q ss_pred ceeccccccccCChHHHHHhHHhhC
Q 024499 99 SYKCSVCNKAFSSYQALGGHKASHR 123 (267)
Q Consensus 99 p~~C~~C~k~F~~~~~L~~H~~~H~ 123 (267)
+|+|.+|++.|.....|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 5999999999999999999999884
No 26
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.61 E-value=2.5e-05 Score=43.90 Aligned_cols=26 Identities=42% Similarity=0.727 Sum_probs=24.3
Q ss_pred ceeCccccccCCChhhHHhhhhhccc
Q 024499 157 THECSICHKSFPTGQALGGHKRCHYE 182 (267)
Q Consensus 157 p~~C~~C~k~F~~~~~L~~H~r~H~~ 182 (267)
+|+|.+|++.|....+|..|++.|..
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 69999999999999999999999864
No 27
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.51 E-value=0.00011 Score=48.56 Aligned_cols=51 Identities=29% Similarity=0.503 Sum_probs=38.5
Q ss_pred ceeccccccccCChHHHHHhHHh-hCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhhHHhhh
Q 024499 99 SYKCSVCNKAFSSYQALGGHKAS-HRKNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQALGGHK 177 (267)
Q Consensus 99 p~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L~~H~ 177 (267)
.|.|++|++. .+...|..|... |. ...+.+.|++|...+. .+|..|+
T Consensus 2 ~f~CP~C~~~-~~~~~L~~H~~~~H~-----------------------------~~~~~v~CPiC~~~~~--~~l~~Hl 49 (54)
T PF05605_consen 2 SFTCPYCGKG-FSESSLVEHCEDEHR-----------------------------SESKNVVCPICSSRVT--DNLIRHL 49 (54)
T ss_pred CcCCCCCCCc-cCHHHHHHHHHhHCc-----------------------------CCCCCccCCCchhhhh--hHHHHHH
Confidence 3899999995 556889999764 52 1235689999998755 4899999
Q ss_pred hhcc
Q 024499 178 RCHY 181 (267)
Q Consensus 178 r~H~ 181 (267)
..++
T Consensus 50 ~~~H 53 (54)
T PF05605_consen 50 NSQH 53 (54)
T ss_pred HHhc
Confidence 8765
No 28
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.51 E-value=4.7e-05 Score=41.07 Aligned_cols=24 Identities=42% Similarity=0.754 Sum_probs=20.4
Q ss_pred eeCccccccCCChhhHHhhhhhcc
Q 024499 158 HECSICHKSFPTGQALGGHKRCHY 181 (267)
Q Consensus 158 ~~C~~C~k~F~~~~~L~~H~r~H~ 181 (267)
|.|++|++.|.+...|..|+++|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 789999999999999999999874
No 29
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.49 E-value=4.1e-05 Score=42.77 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=16.6
Q ss_pred HHHHhHHhhCCCCC-CCCCCCCCCC
Q 024499 114 ALGGHKASHRKNAA-DASASPNAAA 137 (267)
Q Consensus 114 ~L~~H~~~H~~~k~-~c~~C~~~f~ 137 (267)
+|..|+++|+++++ .|..|++.|.
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence 46677777777777 7777776664
No 30
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.46 E-value=5.6e-05 Score=55.78 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=21.9
Q ss_pred eccccccccCChHHHHHhHHhhCCC-CCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhhHHhhhhh
Q 024499 101 KCSVCNKAFSSYQALGGHKASHRKN-AADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQALGGHKRC 179 (267)
Q Consensus 101 ~C~~C~k~F~~~~~L~~H~~~H~~~-k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~ 179 (267)
+|..|+..|.....|..|+....+. .+..... .... .+..+.+.. -...+.|.+|++.|.....|..|++.
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l----~~~~---~~~~~~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~~ 72 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYL----VDPN---RLLNYLRKK-VKESFRCPYCNKTFRSREALQEHMRS 72 (100)
T ss_dssp --------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHH
T ss_pred Ccccccccccccccccccccccccccccccccc----cccc---ccccccccc-cCCCCCCCccCCCCcCHHHHHHHHcC
Confidence 5999999999999999999754332 2111000 0111 222222211 12369999999999999999999996
Q ss_pred c
Q 024499 180 H 180 (267)
Q Consensus 180 H 180 (267)
+
T Consensus 73 ~ 73 (100)
T PF12756_consen 73 K 73 (100)
T ss_dssp T
T ss_pred c
Confidence 5
No 31
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.45 E-value=0.00012 Score=39.45 Aligned_cols=23 Identities=35% Similarity=0.846 Sum_probs=20.0
Q ss_pred eeccccccccCChHHHHHhHHhh
Q 024499 100 YKCSVCNKAFSSYQALGGHKASH 122 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~H 122 (267)
|.|++|++.|.....|..|++.|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 78999999999999999999886
No 32
>smart00355 ZnF_C2H2 zinc finger.
Probab=97.00 E-value=0.00039 Score=37.84 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=22.7
Q ss_pred eeCccccccCCChhhHHhhhhhccc
Q 024499 158 HECSICHKSFPTGQALGGHKRCHYE 182 (267)
Q Consensus 158 ~~C~~C~k~F~~~~~L~~H~r~H~~ 182 (267)
|+|..|++.|.....|..|++.|..
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~~ 25 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHXX 25 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhcc
Confidence 6899999999999999999998753
No 33
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=96.98 E-value=0.00066 Score=62.03 Aligned_cols=84 Identities=21% Similarity=0.400 Sum_probs=54.3
Q ss_pred CCCcceeccccccccCChHHHHHhHHhhCCCCC------------------CCCCCCCCCC-------------------
Q 024499 95 SLKLSYKCSVCNKAFSSYQALGGHKASHRKNAA------------------DASASPNAAA------------------- 137 (267)
Q Consensus 95 ~g~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~------------------~c~~C~~~f~------------------- 137 (267)
+.+..|.|.+|+|.|.++..|+.|+.+|..... .|..|.-.+.
T Consensus 352 ss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~ 431 (500)
T KOG3993|consen 352 SSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELE 431 (500)
T ss_pred ccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeecccccc
Confidence 345589999999999999999999998863111 1222222222
Q ss_pred ----------CCCCCCCcccccccCCCCCceeCccccccCCChhhHHhhhh-hcc
Q 024499 138 ----------ASDVTPPPSATASSGSGGRTHECSICHKSFPTGQALGGHKR-CHY 181 (267)
Q Consensus 138 ----------~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r-~H~ 181 (267)
.+. .-..|.+....+..|.|.+|--.|.....|.+|.. .|.
T Consensus 432 ~pp~~~~ppsss~---~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hp 483 (500)
T KOG3993|consen 432 LPPYDGSPPSSSG---SSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHP 483 (500)
T ss_pred CCCCCCCCcccCC---CCCccccccchhhccccccchHhhhcCcchHhHhhhcCh
Confidence 111 22223333334566888889888888888888875 343
No 34
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.88 E-value=0.00065 Score=36.94 Aligned_cols=24 Identities=42% Similarity=0.816 Sum_probs=22.2
Q ss_pred eeccccccccCChHHHHHhHHhhC
Q 024499 100 YKCSVCNKAFSSYQALGGHKASHR 123 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~H~ 123 (267)
|+|..|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 689999999999999999999874
No 35
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.84 E-value=0.00076 Score=43.39 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=24.2
Q ss_pred CCCCceeCccccccCCChhhHHhhhhhcccCcCC
Q 024499 153 SGGRTHECSICHKSFPTGQALGGHKRCHYEGGIN 186 (267)
Q Consensus 153 ~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~~~~~ 186 (267)
..++|..|++|+..+.+..+|++|+.++++.+++
T Consensus 20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~~ 53 (54)
T PF09237_consen 20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKPG 53 (54)
T ss_dssp TTS--EE-TTT--EESSHHHHHHHHHHHTTTS--
T ss_pred ccCCCCCCCcchhhccchhhHHHHHHHHhcccCC
Confidence 3568999999999999999999999988877653
No 36
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.65 E-value=0.0015 Score=35.75 Aligned_cols=23 Identities=43% Similarity=0.816 Sum_probs=21.6
Q ss_pred eeccccccccCChHHHHHhHHhh
Q 024499 100 YKCSVCNKAFSSYQALGGHKASH 122 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~H 122 (267)
|.|.+|++.|.+...|..|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 78999999999999999999875
No 37
>PHA00732 hypothetical protein
Probab=96.27 E-value=0.0032 Score=45.01 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCCCCCCccccccc-CCCCCceeCccccccCCChhhHHhhhhhccc
Q 024499 128 DASASPNAAAASDVTPPPSATASS-GSGGRTHECSICHKSFPTGQALGGHKRCHYE 182 (267)
Q Consensus 128 ~c~~C~~~f~~~~~~~~L~~H~~~-h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~~ 182 (267)
.|..|++.|.... .|..|++. |. ++.|++|++.|. .|..|.+++.+
T Consensus 3 ~C~~Cgk~F~s~s---~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~~ 49 (79)
T PHA00732 3 KCPICGFTTVTLF---ALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQYD 49 (79)
T ss_pred cCCCCCCccCCHH---HHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccCC
Confidence 5889999999888 89999884 65 368999999997 57788876654
No 38
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.26 E-value=0.0019 Score=35.31 Aligned_cols=23 Identities=39% Similarity=0.761 Sum_probs=21.3
Q ss_pred eeCccccccCCChhhHHhhhhhc
Q 024499 158 HECSICHKSFPTGQALGGHKRCH 180 (267)
Q Consensus 158 ~~C~~C~k~F~~~~~L~~H~r~H 180 (267)
|.|.+|++.|.....|..|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 78999999999999999999865
No 39
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.09 E-value=0.0098 Score=38.34 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=23.0
Q ss_pred CCCcceeccccccccCChHHHHHhHHhhCCCCC
Q 024499 95 SLKLSYKCSVCNKAFSSYQALGGHKASHRKNAA 127 (267)
Q Consensus 95 ~g~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 127 (267)
..+.|-.|++|+..+.+..+|.+|+..+++.++
T Consensus 20 ~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 20 QSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred ccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 467889999999999999999999987665443
No 40
>PRK04860 hypothetical protein; Provisional
Probab=96.02 E-value=0.0038 Score=50.72 Aligned_cols=41 Identities=17% Similarity=0.480 Sum_probs=29.4
Q ss_pred CcceeccccccccCChHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChh
Q 024499 97 KLSYKCSVCNKAFSSYQALGGHKASHRKNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQ 171 (267)
Q Consensus 97 ~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~ 171 (267)
.-+|.|. |++ ....+.+|.++| +++++|.|..|++.|....
T Consensus 117 ~~~Y~C~-C~~---~~~~~rrH~ri~------------------------------~g~~~YrC~~C~~~l~~~~ 157 (160)
T PRK04860 117 TFPYRCK-CQE---HQLTVRRHNRVV------------------------------RGEAVYRCRRCGETLVFKG 157 (160)
T ss_pred EEEEEcC-CCC---eeCHHHHHHHHh------------------------------cCCccEECCCCCceeEEec
Confidence 3579997 887 455666676666 5778888888888776543
No 41
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=95.83 E-value=0.0045 Score=63.94 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=53.4
Q ss_pred CCCCcceeccccccccCChHHHHHhHHh-hCCCCC-CCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChh
Q 024499 94 PSLKLSYKCSVCNKAFSSYQALGGHKAS-HRKNAA-DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQ 171 (267)
Q Consensus 94 ~~g~~p~~C~~C~k~F~~~~~L~~H~~~-H~~~k~-~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~ 171 (267)
+.-.+-|+|..|+..|...+.|..|||+ |..... .|. .+.... .+.+-...-.+.++|.|..|...|+.+.
T Consensus 460 ~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~----~gq~~~---~~arg~~~~~~~~p~~C~~C~~stttng 532 (1406)
T KOG1146|consen 460 HSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCK----AGQNHP---RLARGEVYRCPGKPYPCRACNYSTTTNG 532 (1406)
T ss_pred ecccccccCCccchhhhhHHHhhhcccccccccchhHhH----hccccc---cccccccccCCCCcccceeeeeeeecch
Confidence 3456889999999999999999999997 432211 111 000000 1111111123568999999999999999
Q ss_pred hHHhhhhh
Q 024499 172 ALGGHKRC 179 (267)
Q Consensus 172 ~L~~H~r~ 179 (267)
+|..|++.
T Consensus 533 ~LsihlqS 540 (1406)
T KOG1146|consen 533 NLSIHLQS 540 (1406)
T ss_pred HHHHHHHH
Confidence 99999973
No 42
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.76 E-value=0.0049 Score=34.47 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=20.6
Q ss_pred eeCccccccCCChhhHHhhhhh
Q 024499 158 HECSICHKSFPTGQALGGHKRC 179 (267)
Q Consensus 158 ~~C~~C~k~F~~~~~L~~H~r~ 179 (267)
|.|.+|++.|.....|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 7899999999999999999975
No 43
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.70 E-value=0.0046 Score=34.57 Aligned_cols=23 Identities=39% Similarity=0.694 Sum_probs=21.1
Q ss_pred eeccccccccCChHHHHHhHHhh
Q 024499 100 YKCSVCNKAFSSYQALGGHKASH 122 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~H 122 (267)
|.|..|++.|.....|..|++++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred CCcccCCCCcCCHHHHHHHHccC
Confidence 78999999999999999998763
No 44
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.58 E-value=0.0062 Score=32.96 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=19.3
Q ss_pred eeCccccccCCChhhHHhhhhhccc
Q 024499 158 HECSICHKSFPTGQALGGHKRCHYE 182 (267)
Q Consensus 158 ~~C~~C~k~F~~~~~L~~H~r~H~~ 182 (267)
|+|..|..... ...|..|++.|++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence 78999999888 8999999998753
No 45
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=95.00 E-value=0.021 Score=30.82 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=18.7
Q ss_pred eeccccccccCChHHHHHhHHhhC
Q 024499 100 YKCSVCNKAFSSYQALGGHKASHR 123 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~H~ 123 (267)
|+|..|+.... ...|..|++.|.
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 79999999998 999999998863
No 46
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=94.57 E-value=0.013 Score=50.05 Aligned_cols=45 Identities=33% Similarity=0.711 Sum_probs=29.0
Q ss_pred ccccccccCChHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhhHHhh-hhhc
Q 024499 102 CSVCNKAFSSYQALGGHKASHRKNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQALGGH-KRCH 180 (267)
Q Consensus 102 C~~C~k~F~~~~~L~~H~~~H~~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L~~H-~r~H 180 (267)
|-+|++.|....-|..|++. |-|+|.+|.|..-+.-.|..| |++|
T Consensus 13 cwycnrefddekiliqhqka----------------------------------khfkchichkkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQKA----------------------------------KHFKCHICHKKLFSGPGLSIHCMQVH 58 (341)
T ss_pred eeecccccchhhhhhhhhhh----------------------------------ccceeeeehhhhccCCCceeehhhhh
Confidence 66777777777777666552 347777777766666666665 3444
No 47
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=94.37 E-value=0.048 Score=49.97 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCCCCCCCcccccc--cCCCC--CceeCc--cccccCCChhhHHhhhhhcccCcCCCCC
Q 024499 128 DASASPNAAAASDVTPPPSATAS--SGSGG--RTHECS--ICHKSFPTGQALGGHKRCHYEGGINNNN 189 (267)
Q Consensus 128 ~c~~C~~~f~~~~~~~~L~~H~~--~h~g~--kp~~C~--~C~k~F~~~~~L~~H~r~H~~~~~~~~~ 189 (267)
.|..|...|.... .|..|.+ .|.++ ++|.|. .|++.|.+...|..|..+|.+.....+.
T Consensus 291 ~~~~~~~~~s~~~---~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (467)
T COG5048 291 KSKQCNISFSRSS---PLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK 355 (467)
T ss_pred CCccccCCccccc---cccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence 5667777777777 7777777 77888 888888 6888888888888888888877655443
No 48
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=93.81 E-value=0.062 Score=55.90 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=49.2
Q ss_pred cceeccccccccCChHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhhHHhhh
Q 024499 98 LSYKCSVCNKAFSSYQALGGHKASHRKNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQALGGHK 177 (267)
Q Consensus 98 ~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L~~H~ 177 (267)
.+|.|.+|...|.....|..|++ .|.+.|.... -+.-|...|...+.| |.+|...|....+|..||
T Consensus 1283 ~~~~~~~~~~~~~~~~~l~~~~~----------k~~~~~~~~~---~~~~~~l~~~d~~~~-c~~c~~~~~~~~alqihm 1348 (1406)
T KOG1146|consen 1283 HRYLCRQCKMAFDGEAPLTAHQR----------KFCFAGRGSG---GSMPPPLRVPDCTYH-CLACEVLLSGREALQIHM 1348 (1406)
T ss_pred hhHHHHHHHhhhcchhHHHHHHH----------HHHhccCccc---cCCCCcccCcccccc-chHHHhhcchhHHHHHHH
Confidence 45667777777777777777762 1223333333 444556666667788 999999999999999999
Q ss_pred hh-cccCc
Q 024499 178 RC-HYEGG 184 (267)
Q Consensus 178 r~-H~~~~ 184 (267)
|. |+..+
T Consensus 1349 ~~~~~~~k 1356 (1406)
T KOG1146|consen 1349 RSSAHRRK 1356 (1406)
T ss_pred HHhhhccc
Confidence 94 44333
No 49
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=93.69 E-value=0.036 Score=30.45 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=17.9
Q ss_pred eeCccccccCCChhhHHhhhhh
Q 024499 158 HECSICHKSFPTGQALGGHKRC 179 (267)
Q Consensus 158 ~~C~~C~k~F~~~~~L~~H~r~ 179 (267)
..|.+||+.| ..+.|..|+++
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 5799999999 77889999864
No 50
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=93.28 E-value=0.07 Score=31.35 Aligned_cols=23 Identities=22% Similarity=0.608 Sum_probs=20.9
Q ss_pred ceeccccccccCChHHHHHhHHh
Q 024499 99 SYKCSVCNKAFSSYQALGGHKAS 121 (267)
Q Consensus 99 p~~C~~C~k~F~~~~~L~~H~~~ 121 (267)
+|.|++|++.|.....+..|+..
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 59999999999999999999875
No 51
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=92.00 E-value=0.09 Score=48.17 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=61.1
Q ss_pred cceeccccccccCChHHHHHhHH--hhCCC--CC-CCC--CCCCCCCCCCCCCCcccccccCCCCCceeCcc--ccccCC
Q 024499 98 LSYKCSVCNKAFSSYQALGGHKA--SHRKN--AA-DAS--ASPNAAAASDVTPPPSATASSGSGGRTHECSI--CHKSFP 168 (267)
Q Consensus 98 ~p~~C~~C~k~F~~~~~L~~H~~--~H~~~--k~-~c~--~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~--C~k~F~ 168 (267)
.++.|..|...|.....|..|.+ .|..+ ++ .|. .|++.|.+.. .+..|..+|.+.+++.|.. |.+.+.
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRND---ALKRHILLHTSISPAKEKLLNSSSKFS 364 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccc---cccCCcccccCCCccccccccCccccc
Confidence 57999999999999999999999 79998 78 777 7999999999 9999999999999888865 444444
Q ss_pred Chh
Q 024499 169 TGQ 171 (267)
Q Consensus 169 ~~~ 171 (267)
...
T Consensus 365 ~~~ 367 (467)
T COG5048 365 PLL 367 (467)
T ss_pred ccc
Confidence 433
No 52
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=91.97 E-value=0.12 Score=28.32 Aligned_cols=21 Identities=24% Similarity=0.630 Sum_probs=17.6
Q ss_pred eeccccccccCChHHHHHhHHh
Q 024499 100 YKCSVCNKAFSSYQALGGHKAS 121 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~ 121 (267)
..|..||+.| ....|..|+..
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 5799999999 67789999764
No 53
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=91.91 E-value=0.11 Score=30.44 Aligned_cols=22 Identities=18% Similarity=0.555 Sum_probs=20.3
Q ss_pred ceeCccccccCCChhhHHhhhh
Q 024499 157 THECSICHKSFPTGQALGGHKR 178 (267)
Q Consensus 157 p~~C~~C~k~F~~~~~L~~H~r 178 (267)
+|.|.+|++.|....++..|++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 5889999999999999999986
No 54
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=90.66 E-value=0.2 Score=37.95 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCCh
Q 024499 124 KNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTG 170 (267)
Q Consensus 124 ~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~ 170 (267)
|.|..|..||+.|.--. ..|..|++||..|.-.
T Consensus 7 GtKR~Cp~CG~kFYDLn--------------k~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 7 GTKRTCPSCGAKFYDLN--------------KDPIVCPKCGTEFPPE 39 (108)
T ss_pred CCcccCCCCcchhccCC--------------CCCccCCCCCCccCcc
Confidence 55668899999998533 3788999999999766
No 55
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=90.37 E-value=0.089 Score=44.86 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=17.4
Q ss_pred CcceeccccccccCChHHHHHhHH
Q 024499 97 KLSYKCSVCNKAFSSYQALGGHKA 120 (267)
Q Consensus 97 ~~p~~C~~C~k~F~~~~~L~~H~~ 120 (267)
++.+.|++|++.|..+.-+.+..+
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r 26 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIR 26 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCce
Confidence 456899999999988765554443
No 56
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=90.35 E-value=0.077 Score=47.19 Aligned_cols=27 Identities=26% Similarity=0.674 Sum_probs=24.0
Q ss_pred CCCCcceeccccccccCChHHHHHhHH
Q 024499 94 PSLKLSYKCSVCNKAFSSYQALGGHKA 120 (267)
Q Consensus 94 ~~g~~p~~C~~C~k~F~~~~~L~~H~~ 120 (267)
....|||+|++|+|.|+..-.|+.|+.
T Consensus 393 ~~~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 393 SAKDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred cccCCceeccccchhhccCccceeccc
Confidence 456799999999999999999999965
No 57
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=90.28 E-value=0.25 Score=35.85 Aligned_cols=24 Identities=46% Similarity=0.836 Sum_probs=21.7
Q ss_pred ceeccccccccCChHHHHHhHHhh
Q 024499 99 SYKCSVCNKAFSSYQALGGHKASH 122 (267)
Q Consensus 99 p~~C~~C~k~F~~~~~L~~H~~~H 122 (267)
.|.|.+|++.|.+...|..|++.+
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHT
T ss_pred CCCCCccCCCCcCHHHHHHHHcCc
Confidence 699999999999999999999975
No 58
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.50 E-value=0.13 Score=50.46 Aligned_cols=24 Identities=29% Similarity=0.744 Sum_probs=18.1
Q ss_pred eeccccccccC---------------ChHHHHHhHH-hhC
Q 024499 100 YKCSVCNKAFS---------------SYQALGGHKA-SHR 123 (267)
Q Consensus 100 ~~C~~C~k~F~---------------~~~~L~~H~~-~H~ 123 (267)
+.|.+|++.|. ....|+.|++ .|.
T Consensus 100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H~ 139 (669)
T KOG2231|consen 100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQHK 139 (669)
T ss_pred hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhhh
Confidence 56888888774 7888999985 454
No 59
>PRK04860 hypothetical protein; Provisional
Probab=88.05 E-value=0.3 Score=39.67 Aligned_cols=36 Identities=11% Similarity=0.213 Sum_probs=31.0
Q ss_pred CceeCccccccCCChhhHHhhhhhcccCcCCCCCCCCCCC
Q 024499 156 RTHECSICHKSFPTGQALGGHKRCHYEGGINNNNNNSSSN 195 (267)
Q Consensus 156 kp~~C~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~~~ss~ 195 (267)
-+|.|. |++ ....+..|.++|.+++.|.|..|....
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l 153 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETL 153 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCcee
Confidence 379998 998 777889999999999999998887643
No 60
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=84.42 E-value=0.33 Score=43.81 Aligned_cols=69 Identities=25% Similarity=0.482 Sum_probs=45.5
Q ss_pred Ccceeccc--cccccCChHHHHHhHHh-hCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhhH
Q 024499 97 KLSYKCSV--CNKAFSSYQALGGHKAS-HRKNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQAL 173 (267)
Q Consensus 97 ~~p~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L 173 (267)
.++|+|.+ |.|.+...-.|+.|... |..... .-.. .-.-|.......|+|+|++|.+.++....|
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~---------~~s~---~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l 414 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPIT---------TPTP---APIPHQGFVVENKPYRCEVCSKRYKNLNGL 414 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCC---------CCCC---CCCCcceeeeccCcccChhhhhhhccCCCC
Confidence 56899976 99999988888888653 421111 0000 112233344567999999999999888777
Q ss_pred Hhhh
Q 024499 174 GGHK 177 (267)
Q Consensus 174 ~~H~ 177 (267)
.-|.
T Consensus 415 ~~~~ 418 (442)
T KOG4124|consen 415 KYHR 418 (442)
T ss_pred Ccee
Confidence 6654
No 61
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=83.74 E-value=0.95 Score=35.08 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhhHH
Q 024499 124 KNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQALG 174 (267)
Q Consensus 124 ~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L~ 174 (267)
|-|..|..|++.|.-.. ..|..|++||..|.-...+.
T Consensus 7 GtKr~Cp~cg~kFYDLn--------------k~p~vcP~cg~~~~~~~~~~ 43 (129)
T TIGR02300 7 GTKRICPNTGSKFYDLN--------------RRPAVSPYTGEQFPPEEALK 43 (129)
T ss_pred CccccCCCcCccccccC--------------CCCccCCCcCCccCcchhhc
Confidence 45568888998887533 47899999999987664444
No 62
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=83.55 E-value=0.61 Score=30.67 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=25.8
Q ss_pred CCCCCCcceeccccccccCChHHHHHhHHh
Q 024499 92 EPPSLKLSYKCSVCNKAFSSYQALGGHKAS 121 (267)
Q Consensus 92 ~~~~g~~p~~C~~C~k~F~~~~~L~~H~~~ 121 (267)
....||.-++|+-|++.|.....+.+|...
T Consensus 10 ~~RDGE~~lrCPRC~~~FR~~K~Y~RHVNK 39 (65)
T COG4049 10 RDRDGEEFLRCPRCGMVFRRRKDYIRHVNK 39 (65)
T ss_pred eccCCceeeeCCchhHHHHHhHHHHHHhhH
Confidence 344588899999999999999999999863
No 63
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=80.81 E-value=1.4 Score=28.74 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=26.0
Q ss_pred ceeCccccccCCChhhHHhhhh-hcccC-cCCCCCCCCC
Q 024499 157 THECSICHKSFPTGQALGGHKR-CHYEG-GINNNNNNSS 193 (267)
Q Consensus 157 p~~C~~C~k~F~~~~~L~~H~r-~H~~~-~~~~~~~~~s 193 (267)
.|.|++|++.| ....|..|.. .|..+ +...|..+..
T Consensus 2 ~f~CP~C~~~~-~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGF-SESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCcc-CHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 48999999955 5678999976 45544 4566766654
No 64
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=76.72 E-value=0.8 Score=45.94 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=28.3
Q ss_pred eeccccccccCCh---HHHHHhHHhhCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCcccccc
Q 024499 100 YKCSVCNKAFSSY---QALGGHKASHRKNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKS 166 (267)
Q Consensus 100 ~~C~~C~k~F~~~---~~L~~H~~~H~~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~ 166 (267)
..|..||..|... ..|..|+..+ .|..|...|....|+.|+.||-.
T Consensus 436 l~C~~Cg~v~~Cp~Cd~~lt~H~~~~---------------------~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 436 LLCRDCGYIAECPNCDSPLTLHKATG---------------------QLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred eecccCCCcccCCCCCcceEEecCCC---------------------eeEeCCCCCCCCCCCCCCCCCCC
Confidence 4588888776543 3344444432 44444444456689999999865
No 65
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.22 E-value=1.7 Score=32.79 Aligned_cols=36 Identities=8% Similarity=-0.005 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhhHH
Q 024499 124 KNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQALG 174 (267)
Q Consensus 124 ~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L~ 174 (267)
+-|..|+.|++.|.... ..|..|++||++|. .+.|.
T Consensus 7 GtKridPetg~KFYDLN--------------rdPiVsPytG~s~P-~s~fe 42 (129)
T COG4530 7 GTKRIDPETGKKFYDLN--------------RDPIVSPYTGKSYP-RSYFE 42 (129)
T ss_pred cccccCccccchhhccC--------------CCccccCcccccch-HHHHH
Confidence 44557888998887533 47999999999994 44444
No 66
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=75.39 E-value=2.2 Score=25.51 Aligned_cols=13 Identities=46% Similarity=0.976 Sum_probs=9.2
Q ss_pred CCceeCccccccC
Q 024499 155 GRTHECSICHKSF 167 (267)
Q Consensus 155 ~kp~~C~~C~k~F 167 (267)
.+..+|+.|+..|
T Consensus 23 g~~v~C~~C~~~f 35 (36)
T PF13717_consen 23 GRKVRCSKCGHVF 35 (36)
T ss_pred CcEEECCCCCCEe
Confidence 3457888888776
No 67
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=75.30 E-value=2.9 Score=25.88 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=16.8
Q ss_pred CCcceeccccccccCCh----HHHHHhHH
Q 024499 96 LKLSYKCSVCNKAFSSY----QALGGHKA 120 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~----~~L~~H~~ 120 (267)
+....+|..|++.|... .+|..|++
T Consensus 13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp CSS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred CcCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 45668999999999875 78888883
No 68
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.16 E-value=0.57 Score=39.29 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=59.0
Q ss_pred Ccceeccc--cccccCChHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCCCcccccc----------cCCCCCceeCcc--
Q 024499 97 KLSYKCSV--CNKAFSSYQALGGHKASHRKNAADASASPNAAAASDVTPPPSATAS----------SGSGGRTHECSI-- 162 (267)
Q Consensus 97 ~~p~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~c~~C~~~f~~~~~~~~L~~H~~----------~h~g~kp~~C~~-- 162 (267)
...|.|.+ |-..|.....+..|-.+- ....|..|.+.|.... .|..|+. +-.|.-.|+|-+
T Consensus 77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~--h~~sCs~C~r~~Pt~h---LLd~HI~E~HDs~Fqa~veRG~dMy~ClvEg 151 (253)
T KOG4173|consen 77 VPAFACQVAGCCQVFDALDDYEHHYHTL--HGNSCSFCKRAFPTGH---LLDAHILEWHDSLFQALVERGQDMYQCLVEG 151 (253)
T ss_pred cccccccccchHHHHhhhhhHHHhhhhc--ccchhHHHHHhCCchh---hhhHHHHHHHHHHHHHHHHcCccHHHHHHHh
Confidence 34588876 888888888777775432 2237889999998887 7777763 234566799954
Q ss_pred ccccCCChhhHHhhhh-hcc
Q 024499 163 CHKSFPTGQALGGHKR-CHY 181 (267)
Q Consensus 163 C~k~F~~~~~L~~H~r-~H~ 181 (267)
|+-.|.+......|+- +|.
T Consensus 152 Ct~KFkT~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 152 CTEKFKTSRDRKDHMIRMHK 171 (253)
T ss_pred hhhhhhhhhhhhhHHHHhcc
Confidence 9999999999999974 554
No 69
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.86 E-value=6.7 Score=29.85 Aligned_cols=79 Identities=13% Similarity=0.195 Sum_probs=52.6
Q ss_pred CcceeccccccccCChHHHHHhHHhhC------CCC--------CCCCCCCCCCCCCCCCCCcccccccCCCCCceeCcc
Q 024499 97 KLSYKCSVCNKAFSSYQALGGHKASHR------KNA--------ADASASPNAAAASDVTPPPSATASSGSGGRTHECSI 162 (267)
Q Consensus 97 ~~p~~C~~C~k~F~~~~~L~~H~~~H~------~~k--------~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~ 162 (267)
+-|-+|++||-.....-+|.+.-. |. .+. ..|-.|.+.|.... ....-. -...-.|+|..
T Consensus 13 ~LP~~CpiCgLtLVss~HLARSyH-HLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~---~~~~~~--~~~~~~y~C~~ 86 (112)
T TIGR00622 13 ELPVECPICGLTLILSTHLARSYH-HLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPP---VSPFDE--LKDSHRYVCAV 86 (112)
T ss_pred CCCCcCCcCCCEEeccchHHHhhh-ccCCCcccccccccccCCCCcccCcCCCCCCcc---cccccc--cccccceeCCC
Confidence 457889999999888888875311 11 111 14778888887542 100000 12234799999
Q ss_pred ccccCCChhhHHhhhhhcc
Q 024499 163 CHKSFPTGQALGGHKRCHY 181 (267)
Q Consensus 163 C~k~F~~~~~L~~H~r~H~ 181 (267)
|...|--.-..-.|...|.
T Consensus 87 C~~~FC~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 87 CKNVFCVDCDVFVHESLHC 105 (112)
T ss_pred CCCccccccchhhhhhccC
Confidence 9999999999989988775
No 70
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=73.89 E-value=1.9 Score=27.57 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=19.6
Q ss_pred ceeCccccccCCCh-----hhHHhhhh-hcc
Q 024499 157 THECSICHKSFPTG-----QALGGHKR-CHY 181 (267)
Q Consensus 157 p~~C~~C~k~F~~~-----~~L~~H~r-~H~ 181 (267)
--.|.+|++.+... ++|..|++ +|.
T Consensus 18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~ 48 (50)
T smart00614 18 RAKCKYCGKKLSRSSKGGTSNLRRHLRRKHP 48 (50)
T ss_pred EEEecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence 45899999988765 58999988 564
No 71
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=73.80 E-value=3.2 Score=37.61 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=40.6
Q ss_pred ceeccc--cccccCChHHHHHhHHhhCCCCCCCCCC---CCCCCCCC---CCCCcccccccCCCC---Cce-eCcccccc
Q 024499 99 SYKCSV--CNKAFSSYQALGGHKASHRKNAADASAS---PNAAAASD---VTPPPSATASSGSGG---RTH-ECSICHKS 166 (267)
Q Consensus 99 p~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~c~~C---~~~f~~~~---~~~~L~~H~~~h~g~---kp~-~C~~C~k~ 166 (267)
.|.|+. |..+......|+.|.++.++ +..|.+| .+.|.... ....|+.|......+ |-| .|..|.+.
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~-~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~~ 229 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHG-FVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIY 229 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcC-cEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccce
Confidence 377864 66665556677888665322 1233333 23333211 011445554332222 211 57777777
Q ss_pred CCChhhHHhhhh
Q 024499 167 FPTGQALGGHKR 178 (267)
Q Consensus 167 F~~~~~L~~H~r 178 (267)
|...+.|..|+|
T Consensus 230 FYdDDEL~~HcR 241 (493)
T COG5236 230 FYDDDELRRHCR 241 (493)
T ss_pred ecChHHHHHHHH
Confidence 777777777766
No 72
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=73.62 E-value=2.2 Score=25.60 Aligned_cols=15 Identities=40% Similarity=0.933 Sum_probs=10.3
Q ss_pred CCCceeCccccccCC
Q 024499 154 GGRTHECSICHKSFP 168 (267)
Q Consensus 154 g~kp~~C~~C~k~F~ 168 (267)
+.+..+|+.|+..|.
T Consensus 22 ~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 22 GGRKVRCPKCGHVFR 36 (37)
T ss_pred CCcEEECCCCCcEee
Confidence 445678888887764
No 73
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=72.75 E-value=1.1 Score=41.07 Aligned_cols=79 Identities=20% Similarity=0.373 Sum_probs=47.8
Q ss_pred eeccccccccCChHHHHHhHHh--hC---CCCC--CCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhh
Q 024499 100 YKCSVCNKAFSSYQALGGHKAS--HR---KNAA--DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQA 172 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~--H~---~~k~--~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~ 172 (267)
|.|..|...|.....-+.|.++ |. +.+. ..++--..|........-..-...-.++-++.|.+|.|.|....+
T Consensus 4 ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~a 83 (390)
T KOG2785|consen 4 FTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPKA 83 (390)
T ss_pred ceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChhh
Confidence 8999999999999888899885 54 1111 112211122211100000000011234568999999999999999
Q ss_pred HHhhhh
Q 024499 173 LGGHKR 178 (267)
Q Consensus 173 L~~H~r 178 (267)
...|+.
T Consensus 84 ~~~hl~ 89 (390)
T KOG2785|consen 84 HENHLK 89 (390)
T ss_pred HHHHHH
Confidence 999986
No 74
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=67.09 E-value=5.2 Score=36.29 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=49.3
Q ss_pred ceeccccccccCChHHHHHhHHh--hCCCCCCCCCCCCCCCCCC--C-CCCccccc----cc--CC-------------C
Q 024499 99 SYKCSVCNKAFSSYQALGGHKAS--HRKNAADASASPNAAAASD--V-TPPPSATA----SS--GS-------------G 154 (267)
Q Consensus 99 p~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~c~~C~~~f~~~~--~-~~~L~~H~----~~--h~-------------g 154 (267)
.+.|-.|.|.|..+..|+.||+. |....|.-...++-|.-.. + ...+-.|. .+ .. +
T Consensus 195 r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~ 274 (423)
T KOG2482|consen 195 RLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDD 274 (423)
T ss_pred hheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCC
Confidence 48899999999999999999985 6554443333332221100 0 00000110 00 00 1
Q ss_pred CCc--eeCccccccCCChhhHHhhhhh
Q 024499 155 GRT--HECSICHKSFPTGQALGGHKRC 179 (267)
Q Consensus 155 ~kp--~~C~~C~k~F~~~~~L~~H~r~ 179 (267)
.-+ .+|-.|....-....|..||++
T Consensus 275 a~a~~v~CLfC~~~~en~~~l~eHmk~ 301 (423)
T KOG2482|consen 275 AEALSVVCLFCTNFYENPVFLFEHMKI 301 (423)
T ss_pred CCccceEEEeeccchhhHHHHHHHHHH
Confidence 112 5999999999999999999984
No 75
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.31 E-value=3.3 Score=41.01 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=40.4
Q ss_pred eeccccccccCChHHHHHhHHhhCCCCCCC---CCCCCCCCCCCCCCCcccccccCCCCCceeCc--ccc-ccCCChhhH
Q 024499 100 YKCSVCNKAFSSYQALGGHKASHRKNAADA---SASPNAAAASDVTPPPSATASSGSGGRTHECS--ICH-KSFPTGQAL 173 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~c---~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~--~C~-k~F~~~~~L 173 (267)
-.|..|...|-....|..|++.++..-..| ..++.-|..-. .|..|-+.+ -|.|. .|- +.|.....+
T Consensus 183 p~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~---dLe~HfR~~----HflCE~~~C~~~~f~~~~~~ 255 (669)
T KOG2231|consen 183 PLCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYD---DLEEHFRKG----HFLCEEEFCRTKKFYVAFEL 255 (669)
T ss_pred ccchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccch---HHHHHhhhc----CccccccccccceeeehhHH
Confidence 468889999998899998888654332223 12223333333 566665544 36776 453 344444344
Q ss_pred Hhhhh
Q 024499 174 GGHKR 178 (267)
Q Consensus 174 ~~H~r 178 (267)
..|++
T Consensus 256 ei~lk 260 (669)
T KOG2231|consen 256 EIELK 260 (669)
T ss_pred HHHHH
Confidence 44444
No 76
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=66.22 E-value=1.7 Score=42.97 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=25.0
Q ss_pred CCcceeccccccccCChHHHHHhHHhhC
Q 024499 96 LKLSYKCSVCNKAFSSYQALGGHKASHR 123 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~~~L~~H~~~H~ 123 (267)
-..-|.|..|+|+|.....+..||++|.
T Consensus 789 ~~giFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 789 PTGIFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred CCceeehHHHHHHHHHHhhhhHHHHHHH
Confidence 3456999999999999999999999996
No 77
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=66.17 E-value=6.9 Score=33.92 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=39.8
Q ss_pred CCCCCcceeccccccccCChHHHHHhHHh-hCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChh
Q 024499 93 PPSLKLSYKCSVCNKAFSSYQALGGHKAS-HRKNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQ 171 (267)
Q Consensus 93 ~~~g~~p~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~ 171 (267)
+++..+.|.|..|...+-. +. -.++...|..|.+.|.-.. .. .--|.--|.|..|+..|.-..
T Consensus 106 ip~~drqFaC~~Cd~~WwR--------rvp~rKeVSRCr~C~~rYDPVP-----~d---kmwG~aef~C~~C~h~F~G~~ 169 (278)
T PF15135_consen 106 IPSVDRQFACSSCDHMWWR--------RVPQRKEVSRCRKCRKRYDPVP-----CD---KMWGIAEFHCPKCRHNFRGFA 169 (278)
T ss_pred ccccceeeeccccchHHHh--------ccCcccccccccccccccCCCc-----cc---cccceeeeecccccccchhhh
Confidence 3456788999999755322 22 2233338889988876432 00 012445699999999997554
Q ss_pred h
Q 024499 172 A 172 (267)
Q Consensus 172 ~ 172 (267)
.
T Consensus 170 q 170 (278)
T PF15135_consen 170 Q 170 (278)
T ss_pred h
Confidence 3
No 78
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=65.92 E-value=2.3 Score=33.35 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=15.9
Q ss_pred CceeCccccccCCChhhHHhhhhhcccCc
Q 024499 156 RTHECSICHKSFPTGQALGGHKRCHYEGG 184 (267)
Q Consensus 156 kp~~C~~C~k~F~~~~~L~~H~r~H~~~~ 184 (267)
.-..|-+|||.|.. |.+|++.|+|-.
T Consensus 71 d~i~clecGk~~k~---LkrHL~~~~glt 96 (132)
T PF05443_consen 71 DYIICLECGKKFKT---LKRHLRTHHGLT 96 (132)
T ss_dssp S-EE-TBT--EESB---HHHHHHHTT-S-
T ss_pred CeeEEccCCcccch---HHHHHHHccCCC
Confidence 44689999998865 588999997653
No 79
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.63 E-value=9.3 Score=31.49 Aligned_cols=59 Identities=19% Similarity=0.338 Sum_probs=32.1
Q ss_pred CCCCCCcceeccccccccCChHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChh
Q 024499 92 EPPSLKLSYKCSVCNKAFSSYQALGGHKASHRKNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQ 171 (267)
Q Consensus 92 ~~~~g~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~ 171 (267)
..+..+..|+|++|--.|..+.- .-..||..|...- ++. .-.+..+|++|+|....++
T Consensus 124 ~~~~~~~~~~CPiCl~~~sek~~-------------vsTkCGHvFC~~C----ik~-----alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 124 DPLRKEGTYKCPICLDSVSEKVP-------------VSTKCGHVFCSQC----IKD-----ALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred cccccccccCCCceecchhhccc-------------cccccchhHHHHH----HHH-----HHHhCCCCCCcccccchhh
Confidence 44445666999999877654432 1224554554322 000 0123468999988665554
Q ss_pred h
Q 024499 172 A 172 (267)
Q Consensus 172 ~ 172 (267)
.
T Consensus 182 ~ 182 (187)
T KOG0320|consen 182 F 182 (187)
T ss_pred h
Confidence 3
No 80
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=65.61 E-value=2.3 Score=27.29 Aligned_cols=14 Identities=29% Similarity=0.997 Sum_probs=10.8
Q ss_pred ceeccccccccCCh
Q 024499 99 SYKCSVCNKAFSSY 112 (267)
Q Consensus 99 p~~C~~C~k~F~~~ 112 (267)
-|+|..||..|...
T Consensus 5 ey~C~~Cg~~fe~~ 18 (52)
T TIGR02605 5 EYRCTACGHRFEVL 18 (52)
T ss_pred EEEeCCCCCEeEEE
Confidence 38899999888743
No 81
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=65.24 E-value=2.5 Score=25.51 Aligned_cols=14 Identities=29% Similarity=0.923 Sum_probs=10.3
Q ss_pred ceeccccccccCCh
Q 024499 99 SYKCSVCNKAFSSY 112 (267)
Q Consensus 99 p~~C~~C~k~F~~~ 112 (267)
.|+|..||+.|...
T Consensus 5 ~y~C~~Cg~~fe~~ 18 (41)
T smart00834 5 EYRCEDCGHTFEVL 18 (41)
T ss_pred EEEcCCCCCEEEEE
Confidence 38888888887643
No 82
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=64.40 E-value=3.7 Score=33.12 Aligned_cols=17 Identities=35% Similarity=0.636 Sum_probs=12.5
Q ss_pred eeCccccccCCChhhHH
Q 024499 158 HECSICHKSFPTGQALG 174 (267)
Q Consensus 158 ~~C~~C~k~F~~~~~L~ 174 (267)
++|+.||+.|...-.+.
T Consensus 29 ~~c~~c~~~f~~~e~~~ 45 (154)
T PRK00464 29 RECLACGKRFTTFERVE 45 (154)
T ss_pred eeccccCCcceEeEecc
Confidence 78888888887655443
No 83
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=64.06 E-value=3.6 Score=24.52 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=7.9
Q ss_pred ceeCccccccCC
Q 024499 157 THECSICHKSFP 168 (267)
Q Consensus 157 p~~C~~C~k~F~ 168 (267)
...|+.|+..|.
T Consensus 25 ~v~C~~C~~~~~ 36 (38)
T TIGR02098 25 KVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEE
Confidence 467777776653
No 84
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=63.79 E-value=3 Score=27.51 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=24.7
Q ss_pred cCCCCCceeCccccccCCChhhHHhhhhh
Q 024499 151 SGSGGRTHECSICHKSFPTGQALGGHKRC 179 (267)
Q Consensus 151 ~h~g~kp~~C~~C~k~F~~~~~L~~H~r~ 179 (267)
.-.|+--+.|+-|+..|.......+|...
T Consensus 11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVNK 39 (65)
T COG4049 11 DRDGEEFLRCPRCGMVFRRRKDYIRHVNK 39 (65)
T ss_pred ccCCceeeeCCchhHHHHHhHHHHHHhhH
Confidence 34578889999999999999999999754
No 85
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=61.30 E-value=4.8 Score=32.06 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=18.9
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCC
Q 024499 128 DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFP 168 (267)
Q Consensus 128 ~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~ 168 (267)
.|+.|+..|.... .+.. .+. ..-|.|+.||....
T Consensus 101 ~Cp~C~~~y~~~e---a~~~---~d~-~~~f~Cp~Cg~~l~ 134 (147)
T smart00531 101 KCPNCQSKYTFLE---ANQL---LDM-DGTFTCPRCGEELE 134 (147)
T ss_pred ECcCCCCEeeHHH---HHHh---cCC-CCcEECCCCCCEEE
Confidence 6777777666432 1111 011 23399999997653
No 86
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=60.69 E-value=1.6 Score=43.22 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=25.0
Q ss_pred CceeCccccccCCChhhHHhhhhhcccC
Q 024499 156 RTHECSICHKSFPTGQALGGHKRCHYEG 183 (267)
Q Consensus 156 kp~~C~~C~k~F~~~~~L~~H~r~H~~~ 183 (267)
-.|.|..|+|.|-.-..+..||++|.-.
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~Hr~q 818 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTHRQQ 818 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4699999999999999999999999743
No 87
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=60.53 E-value=1.6 Score=43.39 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=17.1
Q ss_pred CCceeCccccccCCChhhHHhhh
Q 024499 155 GRTHECSICHKSFPTGQALGGHK 177 (267)
Q Consensus 155 ~kp~~C~~C~k~F~~~~~L~~H~ 177 (267)
.|.-+|+.|+..|...+-+..|+
T Consensus 676 tRqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 676 TRQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred HhcCCCCCCCCCCCcccccccCC
Confidence 35568999999998887776653
No 88
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=60.34 E-value=7 Score=28.26 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChh
Q 024499 126 AADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQ 171 (267)
Q Consensus 126 k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~ 171 (267)
+..|+.|++.- +.+ .+...+.|..||..|.-..
T Consensus 35 ~~~Cp~C~~~~-----------VkR--~a~GIW~C~kCg~~fAGga 67 (89)
T COG1997 35 KHVCPFCGRTT-----------VKR--IATGIWKCRKCGAKFAGGA 67 (89)
T ss_pred CCcCCCCCCcc-----------eee--eccCeEEcCCCCCeecccc
Confidence 33788887642 222 2345799999999997553
No 89
>PHA00626 hypothetical protein
Probab=60.31 E-value=8.7 Score=25.35 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=13.7
Q ss_pred CceeCccccccCCChhhHH
Q 024499 156 RTHECSICHKSFPTGQALG 174 (267)
Q Consensus 156 kp~~C~~C~k~F~~~~~L~ 174 (267)
..|+|..||..|+. +++.
T Consensus 22 nrYkCkdCGY~ft~-~~~~ 39 (59)
T PHA00626 22 DDYVCCDCGYNDSK-DAFG 39 (59)
T ss_pred cceEcCCCCCeech-hhhh
Confidence 57999999999864 3443
No 90
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=58.35 E-value=8.2 Score=21.29 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=7.9
Q ss_pred eeCccccccCC
Q 024499 158 HECSICHKSFP 168 (267)
Q Consensus 158 ~~C~~C~k~F~ 168 (267)
-.|+.||..|.
T Consensus 15 ~~Cp~CG~~F~ 25 (26)
T PF10571_consen 15 KFCPHCGYDFE 25 (26)
T ss_pred CcCCCCCCCCc
Confidence 36788887774
No 91
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=58.27 E-value=6.7 Score=21.57 Aligned_cols=20 Identities=15% Similarity=0.586 Sum_probs=15.5
Q ss_pred eeCccccccCCChhhHHhhhh
Q 024499 158 HECSICHKSFPTGQALGGHKR 178 (267)
Q Consensus 158 ~~C~~C~k~F~~~~~L~~H~r 178 (267)
..|++|++.+ ....+..|..
T Consensus 2 v~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLD 21 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHH
Confidence 3699999998 5567777765
No 92
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=57.74 E-value=7.3 Score=22.62 Aligned_cols=10 Identities=20% Similarity=0.717 Sum_probs=6.3
Q ss_pred CceeCccccc
Q 024499 156 RTHECSICHK 165 (267)
Q Consensus 156 kp~~C~~C~k 165 (267)
.++.|++||.
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 4566777764
No 93
>PF14353 CpXC: CpXC protein
Probab=55.79 E-value=4.9 Score=31.05 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=17.7
Q ss_pred CceeCccccccCCChhhHHhhhhhc
Q 024499 156 RTHECSICHKSFPTGQALGGHKRCH 180 (267)
Q Consensus 156 kp~~C~~C~k~F~~~~~L~~H~r~H 180 (267)
-.|.|+.||+.|.-...+.-|-..|
T Consensus 37 ~~~~CP~Cg~~~~~~~p~lY~D~~~ 61 (128)
T PF14353_consen 37 FSFTCPSCGHKFRLEYPLLYHDPEK 61 (128)
T ss_pred CEEECCCCCCceecCCCEEEEcCCC
Confidence 3588999998887776666665433
No 94
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=55.51 E-value=4.5 Score=35.14 Aligned_cols=55 Identities=22% Similarity=0.492 Sum_probs=31.7
Q ss_pred eeccccccccCChHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhhHHhhhhh
Q 024499 100 YKCSVCNKAFSSYQALGGHKASHRKNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQALGGHKRC 179 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~ 179 (267)
|.|.+||....-. .|..|+-.-+ + .-|.|--|++.|.+ .....|..+
T Consensus 4 FtCnvCgEsvKKp-~vekH~srCr------------------------------n-~~fSCIDC~k~F~~-~sYknH~kC 50 (276)
T KOG2186|consen 4 FTCNVCGESVKKP-QVEKHMSRCR------------------------------N-AYFSCIDCGKTFER-VSYKNHTKC 50 (276)
T ss_pred Eehhhhhhhcccc-chHHHHHhcc------------------------------C-CeeEEeeccccccc-chhhhhhhh
Confidence 7788888775533 3555655433 2 44666666666666 445556665
Q ss_pred cccCcCCC
Q 024499 180 HYEGGINN 187 (267)
Q Consensus 180 H~~~~~~~ 187 (267)
-+...-|+
T Consensus 51 ITEaQKYg 58 (276)
T KOG2186|consen 51 ITEAQKYG 58 (276)
T ss_pred cchHHHhh
Confidence 55444443
No 95
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=54.15 E-value=7.5 Score=29.12 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=47.4
Q ss_pred CcceeccccccccCChHHHHHhHHh-hCCCCC-----C------CC--CC---CCCCCCCCCCCCcccccccCCCCCcee
Q 024499 97 KLSYKCSVCNKAFSSYQALGGHKAS-HRKNAA-----D------AS--AS---PNAAAASDVTPPPSATASSGSGGRTHE 159 (267)
Q Consensus 97 ~~p~~C~~C~k~F~~~~~L~~H~~~-H~~~k~-----~------c~--~C---~~~f~~~~~~~~L~~H~~~h~g~kp~~ 159 (267)
.+...|..|+....- ..+..|.+. |...+. . .. .. ...+.... ..--....++ .-|.
T Consensus 9 ~~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~--~~Pi~gLp~~---~G~~ 82 (109)
T PF12013_consen 9 YRVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDP--SPPIPGLPVY---DGYR 82 (109)
T ss_pred CCEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCC--CCcCCCCCCC---CCee
Confidence 456789999988776 788899884 432211 0 00 00 00011000 0011122233 2389
Q ss_pred C----ccccccCCChhhHHhhhhhccc
Q 024499 160 C----SICHKSFPTGQALGGHKRCHYE 182 (267)
Q Consensus 160 C----~~C~k~F~~~~~L~~H~r~H~~ 182 (267)
| ..|+..+.+...+..|.+.++|
T Consensus 83 C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 83 CQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 9 9999999999999999998764
No 96
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=53.18 E-value=9 Score=30.09 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=17.4
Q ss_pred CCcceeccccccccCChHHHHHhHHhhCCCCC
Q 024499 96 LKLSYKCSVCNKAFSSYQALGGHKASHRKNAA 127 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 127 (267)
.+.--.|-+|||.|.. |++|.+.|.+-.+
T Consensus 69 ~~d~i~clecGk~~k~---LkrHL~~~~gltp 97 (132)
T PF05443_consen 69 TPDYIICLECGKKFKT---LKRHLRTHHGLTP 97 (132)
T ss_dssp -SS-EE-TBT--EESB---HHHHHHHTT-S-H
T ss_pred ccCeeEEccCCcccch---HHHHHHHccCCCH
Confidence 4445789999999976 6899999965433
No 97
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=53.11 E-value=9.6 Score=23.83 Aligned_cols=11 Identities=36% Similarity=1.105 Sum_probs=6.3
Q ss_pred eeccccccccC
Q 024499 100 YKCSVCNKAFS 110 (267)
Q Consensus 100 ~~C~~C~k~F~ 110 (267)
|+|..||..|.
T Consensus 4 y~C~~CG~~~~ 14 (46)
T PRK00398 4 YKCARCGREVE 14 (46)
T ss_pred EECCCCCCEEE
Confidence 56666665543
No 98
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=52.38 E-value=24 Score=30.92 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=56.3
Q ss_pred CCCcceeccccccccCChHHHHHhHHhhC---CCCCCCCCCCCCCCCCCC---CCCccccccc----CCCCCceeCcccc
Q 024499 95 SLKLSYKCSVCNKAFSSYQALGGHKASHR---KNAADASASPNAAAASDV---TPPPSATASS----GSGGRTHECSICH 164 (267)
Q Consensus 95 ~g~~p~~C~~C~k~F~~~~~L~~H~~~H~---~~k~~c~~C~~~f~~~~~---~~~L~~H~~~----h~g~kp~~C~~C~ 164 (267)
.|-+.|+|..|.........+ .|+.+-. .+.-.|..|++.-..+-. .-.-..|.+. ....+++.|+.||
T Consensus 138 hGGrif~CsfC~~flCEDDQF-EHQAsCQvLe~E~~KC~SCNrlGq~sCLRCK~cfCddHvrrKg~ky~k~k~~PCPKCg 216 (314)
T PF06524_consen 138 HGGRIFKCSFCDNFLCEDDQF-EHQASCQVLESETFKCQSCNRLGQYSCLRCKICFCDDHVRRKGFKYEKGKPIPCPKCG 216 (314)
T ss_pred CCCeEEEeecCCCeeeccchh-hhhhhhhhhhcccccccccccccchhhhheeeeehhhhhhhcccccccCCCCCCCCCC
Confidence 477889999998766554443 4665432 222255555543332210 0000122221 2345899999999
Q ss_pred ccCCChhhHHhhhhhcccCcCCCC
Q 024499 165 KSFPTGQALGGHKRCHYEGGINNN 188 (267)
Q Consensus 165 k~F~~~~~L~~H~r~H~~~~~~~~ 188 (267)
........|..-.|+|.=+++...
T Consensus 217 ~et~eTkdLSmStR~hkyGRQ~~~ 240 (314)
T PF06524_consen 217 YETQETKDLSMSTRSHKYGRQGQA 240 (314)
T ss_pred CcccccccceeeeecchhccccCC
Confidence 999999999988899876655544
No 99
>PF15269 zf-C2H2_7: Zinc-finger
Probab=51.11 E-value=19 Score=22.69 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCcceeccccccccCChHHHHHhHHhh
Q 024499 96 LKLSYKCSVCNKAFSSYQALGGHKASH 122 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~~~L~~H~~~H 122 (267)
.-..|+|=+|..+...+++|-.||+-.
T Consensus 17 kp~~ykcfqcpftc~~kshl~nhmky~ 43 (54)
T PF15269_consen 17 KPFKYKCFQCPFTCNEKSHLFNHMKYS 43 (54)
T ss_pred CCccceeecCCcccchHHHHHHHHHHH
Confidence 345689999999999999999998754
No 100
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=50.32 E-value=8.2 Score=30.26 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=19.6
Q ss_pred eeCccccccCCChhhHHhhhhhcccCcCC
Q 024499 158 HECSICHKSFPTGQALGGHKRCHYEGGIN 186 (267)
Q Consensus 158 ~~C~~C~k~F~~~~~L~~H~r~H~~~~~~ 186 (267)
..|-+|||.|. .|++|+.+|++-.+.
T Consensus 77 IicLEDGkkfK---SLKRHL~t~~gmTPd 102 (148)
T COG4957 77 IICLEDGKKFK---SLKRHLTTHYGLTPD 102 (148)
T ss_pred EEEeccCcchH---HHHHHHhcccCCCHH
Confidence 57888888884 578888888876443
No 101
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=48.68 E-value=14 Score=31.56 Aligned_cols=27 Identities=19% Similarity=0.424 Sum_probs=21.2
Q ss_pred CCcceeccccccccCChHHHHHhHHhh
Q 024499 96 LKLSYKCSVCNKAFSSYQALGGHKASH 122 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~~~L~~H~~~H 122 (267)
.+..|.|..|+|.|.-..-...|+..-
T Consensus 74 ~~~K~~C~lc~KlFkg~eFV~KHI~nK 100 (214)
T PF04959_consen 74 DEDKWRCPLCGKLFKGPEFVRKHIFNK 100 (214)
T ss_dssp SSEEEEE-SSS-EESSHHHHHHHHHHH
T ss_pred cCCEECCCCCCcccCChHHHHHHHhhc
Confidence 455699999999999999999998753
No 102
>PRK14873 primosome assembly protein PriA; Provisional
Probab=48.22 E-value=6.8 Score=39.16 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=29.1
Q ss_pred CCcce-eccccccccCCh---HHHHHhHHhhCCC-CCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCcccccc
Q 024499 96 LKLSY-KCSVCNKAFSSY---QALGGHKASHRKN-AADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKS 166 (267)
Q Consensus 96 g~~p~-~C~~C~k~F~~~---~~L~~H~~~H~~~-k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~ 166 (267)
|--++ .|..||..+... ..|..| ... ...|..||.. . .++.|+.||..
T Consensus 379 Gyap~l~C~~Cg~~~~C~~C~~~L~~h----~~~~~l~Ch~CG~~------------------~-~p~~Cp~Cgs~ 431 (665)
T PRK14873 379 GYVPSLACARCRTPARCRHCTGPLGLP----SAGGTPRCRWCGRA------------------A-PDWRCPRCGSD 431 (665)
T ss_pred CCCCeeEhhhCcCeeECCCCCCceeEe----cCCCeeECCCCcCC------------------C-cCccCCCCcCC
Confidence 34344 788888877654 234444 322 2377777742 2 47899999865
No 103
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=47.93 E-value=12 Score=28.74 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.8
Q ss_pred CCcceeccccccccCChHHHHHhHHh
Q 024499 96 LKLSYKCSVCNKAFSSYQALGGHKAS 121 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~~~L~~H~~~ 121 (267)
|-..|-|-.|.+-|....+|..|.++
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHhc
Confidence 66679999999999999999999885
No 104
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=47.58 E-value=7.2 Score=33.87 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=22.7
Q ss_pred eeCccccccCCChhhHHhhhhhcccCcCCCCCCCCCCCCC
Q 024499 158 HECSICHKSFPTGQALGGHKRCHYEGGINNNNNNSSSNNN 197 (267)
Q Consensus 158 ~~C~~C~k~F~~~~~L~~H~r~H~~~~~~~~~~~~ss~~~ 197 (267)
|.|.+||-.... ..|.+|+-..++ .-+.|--|+..+..
T Consensus 4 FtCnvCgEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~ 41 (276)
T KOG2186|consen 4 FTCNVCGESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFER 41 (276)
T ss_pred Eehhhhhhhccc-cchHHHHHhccC-CeeEEeeccccccc
Confidence 677788776543 356667765555 44555555555444
No 105
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=47.03 E-value=17 Score=24.33 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=8.3
Q ss_pred CceeCccccc
Q 024499 156 RTHECSICHK 165 (267)
Q Consensus 156 kp~~C~~C~k 165 (267)
.+|.|+.||.
T Consensus 49 ~~Y~Cp~CGF 58 (61)
T COG2888 49 NPYRCPKCGF 58 (61)
T ss_pred CceECCCcCc
Confidence 6899999985
No 106
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=45.93 E-value=14 Score=21.72 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=5.2
Q ss_pred eeccccccc
Q 024499 100 YKCSVCNKA 108 (267)
Q Consensus 100 ~~C~~C~k~ 108 (267)
|+|.+||..
T Consensus 3 ~~C~~CG~i 11 (34)
T cd00729 3 WVCPVCGYI 11 (34)
T ss_pred EECCCCCCE
Confidence 566666644
No 107
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=45.39 E-value=7.9 Score=35.60 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=47.1
Q ss_pred CCcceeccccccccCChHHHHHhHHhhCCCCC-CCCCCCCCCCCCCCCCCccc--ccccCCC---CCceeCcccc---cc
Q 024499 96 LKLSYKCSVCNKAFSSYQALGGHKASHRKNAA-DASASPNAAAASDVTPPPSA--TASSGSG---GRTHECSICH---KS 166 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~c~~C~~~f~~~~~~~~L~~--H~~~h~g---~kp~~C~~C~---k~ 166 (267)
...|-.|-.|++.|.....-..||..|++-.. .-. .|.. -.....| .+-|.|-.|+ +.
T Consensus 163 e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdre-------------YL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~ 229 (390)
T KOG2785|consen 163 ELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDRE-------------YLTDEKGLLKYLGEKVGIGFICLFCNELGRP 229 (390)
T ss_pred ccCCcceeecCCCcccHHHHHHHHhhccCCcCCchH-------------hhhchhHHHHHHHHHhccCceEEEeccccCc
Confidence 34457799999999999999999988775433 000 0000 0000011 2358898998 99
Q ss_pred CCChhhHHhhhh
Q 024499 167 FPTGQALGGHKR 178 (267)
Q Consensus 167 F~~~~~L~~H~r 178 (267)
|.+..+.+.||+
T Consensus 230 f~sleavr~HM~ 241 (390)
T KOG2785|consen 230 FSSLEAVRAHMR 241 (390)
T ss_pred ccccHHHHHHHh
Confidence 999999999996
No 108
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=45.08 E-value=18 Score=27.01 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=22.1
Q ss_pred eec----cccccccCChHHHHHhHHhhC
Q 024499 100 YKC----SVCNKAFSSYQALGGHKASHR 123 (267)
Q Consensus 100 ~~C----~~C~k~F~~~~~L~~H~~~H~ 123 (267)
|.| ..|+..+.+...+..|.+.++
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~H 108 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEH 108 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence 999 999999999999999998764
No 109
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=44.80 E-value=24 Score=19.11 Aligned_cols=10 Identities=20% Similarity=0.447 Sum_probs=8.4
Q ss_pred CceeCccccc
Q 024499 156 RTHECSICHK 165 (267)
Q Consensus 156 kp~~C~~C~k 165 (267)
..|.|+.||+
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 5799999985
No 110
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=44.63 E-value=11 Score=25.47 Aligned_cols=10 Identities=50% Similarity=1.261 Sum_probs=3.1
Q ss_pred eccccccccC
Q 024499 101 KCSVCNKAFS 110 (267)
Q Consensus 101 ~C~~C~k~F~ 110 (267)
.|.+|++.|.
T Consensus 11 ~C~~C~~~F~ 20 (69)
T PF01363_consen 11 NCMICGKKFS 20 (69)
T ss_dssp B-TTT--B-B
T ss_pred cCcCcCCcCC
Confidence 4555555553
No 111
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.43 E-value=5.9 Score=33.97 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=15.7
Q ss_pred CcceeccccccccCChHHHHHhHH
Q 024499 97 KLSYKCSVCNKAFSSYQALGGHKA 120 (267)
Q Consensus 97 ~~p~~C~~C~k~F~~~~~L~~H~~ 120 (267)
++.+.|++|+-.|....-+.+-.|
T Consensus 17 kk~ieCPvC~tkFkkeev~tgsiR 40 (267)
T COG1655 17 KKTIECPVCNTKFKKEEVKTGSIR 40 (267)
T ss_pred hceeccCcccchhhhhheecccee
Confidence 455888888888876654444333
No 112
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=43.17 E-value=11 Score=23.11 Aligned_cols=15 Identities=33% Similarity=0.930 Sum_probs=11.4
Q ss_pred ceeccccccccCChH
Q 024499 99 SYKCSVCNKAFSSYQ 113 (267)
Q Consensus 99 p~~C~~C~k~F~~~~ 113 (267)
-|+|..||..|....
T Consensus 5 ey~C~~Cg~~fe~~~ 19 (42)
T PF09723_consen 5 EYRCEECGHEFEVLQ 19 (42)
T ss_pred EEEeCCCCCEEEEEE
Confidence 389999998886543
No 113
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=42.84 E-value=18 Score=23.36 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=5.3
Q ss_pred eeCccccccCC
Q 024499 158 HECSICHKSFP 168 (267)
Q Consensus 158 ~~C~~C~k~F~ 168 (267)
+.|..||+.|-
T Consensus 19 ~~Cr~Cg~~~C 29 (57)
T cd00065 19 HHCRNCGRIFC 29 (57)
T ss_pred cccCcCcCCcC
Confidence 44445555444
No 114
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=42.62 E-value=16 Score=29.84 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=8.5
Q ss_pred CCCceeCcccc
Q 024499 154 GGRTHECSICH 164 (267)
Q Consensus 154 g~kp~~C~~C~ 164 (267)
|+-|-+|++||
T Consensus 146 ge~P~~CPiCg 156 (166)
T COG1592 146 GEAPEVCPICG 156 (166)
T ss_pred CCCCCcCCCCC
Confidence 46678888887
No 115
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=42.53 E-value=8.9 Score=24.89 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=17.5
Q ss_pred CcceeccccccccCChHHHHHhHHhhC
Q 024499 97 KLSYKCSVCNKAFSSYQALGGHKASHR 123 (267)
Q Consensus 97 ~~p~~C~~C~k~F~~~~~L~~H~~~H~ 123 (267)
...|+|+.|++.|-..-.+-.|...|.
T Consensus 19 ~~~y~C~~C~~~FC~dCD~fiHE~LH~ 45 (51)
T PF07975_consen 19 SSRYRCPKCKNHFCIDCDVFIHETLHN 45 (51)
T ss_dssp -EEE--TTTT--B-HHHHHTTTTTS-S
T ss_pred CCeEECCCCCCccccCcChhhhccccC
Confidence 467999999999999999888888883
No 116
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=42.08 E-value=10 Score=21.36 Aligned_cols=24 Identities=33% Similarity=0.733 Sum_probs=13.3
Q ss_pred eeCccccccCCChhhHHhhhhhccc
Q 024499 158 HECSICHKSFPTGQALGGHKRCHYE 182 (267)
Q Consensus 158 ~~C~~C~k~F~~~~~L~~H~r~H~~ 182 (267)
|.|-.|++.| .......|...-++
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht~CItE 24 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHTSCITE 24 (28)
T ss_dssp EEETTTTEEE-EGGGTTT-----S-
T ss_pred CeeecCCCCc-CcCCcCCCCcccCc
Confidence 5688899999 66666777665443
No 117
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=41.85 E-value=12 Score=29.19 Aligned_cols=15 Identities=33% Similarity=0.972 Sum_probs=12.7
Q ss_pred ceeCccccccCCChh
Q 024499 157 THECSICHKSFPTGQ 171 (267)
Q Consensus 157 p~~C~~C~k~F~~~~ 171 (267)
||+|..||+.|...+
T Consensus 1 PH~Ct~Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGS 15 (131)
T ss_pred CcccCcCCCCcCCCc
Confidence 688999999998776
No 118
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=41.79 E-value=28 Score=23.29 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=8.0
Q ss_pred CceeCccccc
Q 024499 156 RTHECSICHK 165 (267)
Q Consensus 156 kp~~C~~C~k 165 (267)
.+|+|+.||.
T Consensus 47 ~~Y~CP~CGF 56 (59)
T PRK14890 47 NPYTCPKCGF 56 (59)
T ss_pred CceECCCCCC
Confidence 5789988885
No 119
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=41.14 E-value=18 Score=22.66 Aligned_cols=12 Identities=25% Similarity=0.711 Sum_probs=8.9
Q ss_pred eeccccccccCC
Q 024499 100 YKCSVCNKAFSS 111 (267)
Q Consensus 100 ~~C~~C~k~F~~ 111 (267)
|.|..||..|..
T Consensus 3 Y~C~~Cg~~~~~ 14 (44)
T smart00659 3 YICGECGRENEI 14 (44)
T ss_pred EECCCCCCEeec
Confidence 778888877653
No 120
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=41.10 E-value=8.1 Score=32.92 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=20.5
Q ss_pred CCCceeCccccccCCChhhHHhhhhh
Q 024499 154 GGRTHECSICHKSFPTGQALGGHKRC 179 (267)
Q Consensus 154 g~kp~~C~~C~k~F~~~~~L~~H~r~ 179 (267)
.+.-|.|..|+|.|.-..-..+|+..
T Consensus 74 ~~~K~~C~lc~KlFkg~eFV~KHI~n 99 (214)
T PF04959_consen 74 DEDKWRCPLCGKLFKGPEFVRKHIFN 99 (214)
T ss_dssp SSEEEEE-SSS-EESSHHHHHHHHHH
T ss_pred cCCEECCCCCCcccCChHHHHHHHhh
Confidence 34469999999999999999999874
No 121
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=39.94 E-value=8.6 Score=32.70 Aligned_cols=25 Identities=28% Similarity=0.620 Sum_probs=20.1
Q ss_pred CCceeCccccccCCChhhHHhhhhh
Q 024499 155 GRTHECSICHKSFPTGQALGGHKRC 179 (267)
Q Consensus 155 ~kp~~C~~C~k~F~~~~~L~~H~r~ 179 (267)
+|.+.|++|++.|.+..-+.+..|.
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~ 27 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRV 27 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceE
Confidence 4678999999999988777766653
No 122
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=39.31 E-value=22 Score=33.40 Aligned_cols=35 Identities=6% Similarity=0.039 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhhH
Q 024499 125 NAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQAL 173 (267)
Q Consensus 125 ~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L 173 (267)
.+|.|..|+....+.. .+-|+|..||+.+......
T Consensus 349 ~~p~Cp~Cg~~m~S~G--------------~~g~rC~kCg~~~~~~~~~ 383 (421)
T COG1571 349 VNPVCPRCGGRMKSAG--------------RNGFRCKKCGTRARETLIK 383 (421)
T ss_pred cCCCCCccCCchhhcC--------------CCCcccccccccCCccccc
Confidence 3458999998776644 3389999999998766543
No 123
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=38.61 E-value=16 Score=22.19 Aligned_cols=15 Identities=27% Similarity=0.789 Sum_probs=12.9
Q ss_pred ceeccccccccCChH
Q 024499 99 SYKCSVCNKAFSSYQ 113 (267)
Q Consensus 99 p~~C~~C~k~F~~~~ 113 (267)
+|+|..|++.|-...
T Consensus 12 ~f~C~~C~~~FC~~H 26 (39)
T smart00154 12 GFKCRHCGNLFCGEH 26 (39)
T ss_pred CeECCccCCcccccc
Confidence 799999999998654
No 124
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=38.26 E-value=21 Score=32.48 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.2
Q ss_pred ceeCccccccCCChhhHHhhhhh
Q 024499 157 THECSICHKSFPTGQALGGHKRC 179 (267)
Q Consensus 157 p~~C~~C~k~F~~~~~L~~H~r~ 179 (267)
.++|-+|.|.|..+..|+.|||.
T Consensus 195 r~~CLyCekifrdkntLkeHMrk 217 (423)
T KOG2482|consen 195 RLRCLYCEKIFRDKNTLKEHMRK 217 (423)
T ss_pred hheeeeeccccCCcHHHHHHHHh
Confidence 47999999999999999999984
No 125
>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.
Probab=37.89 E-value=14 Score=27.46 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=15.0
Q ss_pred cccCCCCCceeCccccccCCC
Q 024499 149 ASSGSGGRTHECSICHKSFPT 169 (267)
Q Consensus 149 ~~~h~g~kp~~C~~C~k~F~~ 169 (267)
+..+.| ++++|..||..|.-
T Consensus 72 ~~l~~g-~~~rC~eCG~~fkL 91 (97)
T cd00924 72 MWLEKG-KPKRCPECGHVFKL 91 (97)
T ss_pred EEEeCC-CceeCCCCCcEEEE
Confidence 444555 79999999988853
No 126
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=37.82 E-value=17 Score=35.35 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=24.8
Q ss_pred CCceeCccccccCCChhhHHhhhhhcccC
Q 024499 155 GRTHECSICHKSFPTGQALGGHKRCHYEG 183 (267)
Q Consensus 155 ~kp~~C~~C~k~F~~~~~L~~H~r~H~~~ 183 (267)
.++.+|..||..|........||..|-..
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H~dw 444 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIHDDW 444 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhhhhh
Confidence 56799999999999999888888887654
No 127
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=37.02 E-value=20 Score=34.99 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=23.0
Q ss_pred CCcceeccccccccCChHHHHHhHHhhC
Q 024499 96 LKLSYKCSVCNKAFSSYQALGGHKASHR 123 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~~~L~~H~~~H~ 123 (267)
..++.+|..||..|........||..|.
T Consensus 415 ~~~pnqC~~CG~R~~~~ee~sk~md~H~ 442 (579)
T KOG2071|consen 415 KDSPNQCKSCGLRFDDSEERSKHMDIHD 442 (579)
T ss_pred cCCcchhcccccccccchhhhhHhhhhh
Confidence 4567999999999999888777777664
No 128
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.60 E-value=28 Score=21.58 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=11.4
Q ss_pred eCccccccCCChhhH
Q 024499 159 ECSICHKSFPTGQAL 173 (267)
Q Consensus 159 ~C~~C~k~F~~~~~L 173 (267)
.|.+|++.|+.....
T Consensus 10 ~C~~C~rpf~WRKKW 24 (42)
T PF10013_consen 10 ICPVCGRPFTWRKKW 24 (42)
T ss_pred cCcccCCcchHHHHH
Confidence 588899988876544
No 129
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.58 E-value=31 Score=26.23 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=20.0
Q ss_pred CcceeccccccccCChHHHHHhHHhhC
Q 024499 97 KLSYKCSVCNKAFSSYQALGGHKASHR 123 (267)
Q Consensus 97 ~~p~~C~~C~k~F~~~~~L~~H~~~H~ 123 (267)
...|+|..|.+.|-..-.+-.|...|.
T Consensus 79 ~~~y~C~~C~~~FC~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 79 SHRYVCAVCKNVFCVDCDVFVHESLHC 105 (112)
T ss_pred ccceeCCCCCCccccccchhhhhhccC
Confidence 345888888888887777777777663
No 130
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.06 E-value=18 Score=34.27 Aligned_cols=58 Identities=21% Similarity=0.346 Sum_probs=37.1
Q ss_pred CCcceeccccccccCChHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCCCccccc-ccCCCCCceeCcccc
Q 024499 96 LKLSYKCSVCNKAFSSYQALGGHKASHRKNAADASASPNAAAASDVTPPPSATA-SSGSGGRTHECSICH 164 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~~~L~~H~~~H~~~k~~c~~C~~~f~~~~~~~~L~~H~-~~h~g~kp~~C~~C~ 164 (267)
|+.-|+|.+|. +..|++-|.=..-.|+.-++.+.... .-..|. ++|+-.-|--|..||
T Consensus 70 gKQGfQCqvC~--------fvvHkrChefVtF~CPGadkg~dtDd---pr~kHkf~~~tYssPTFCDhCG 128 (683)
T KOG0696|consen 70 GKQGFQCQVCC--------FVVHKRCHEFVTFSCPGADKGPDTDD---PRSKHKFKIHTYSSPTFCDHCG 128 (683)
T ss_pred ccCceeeeEEe--------ehhhhhhcceEEEECCCCCCCCCCCC---cccccceeeeecCCCchhhhHH
Confidence 45568888886 45899988644447777777776655 444453 445555555666665
No 131
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=36.05 E-value=32 Score=26.31 Aligned_cols=44 Identities=9% Similarity=0.263 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccccccccCCh
Q 024499 51 EEEYMALCLIMLARGT-TTANTAPAERTPSLAPEQRPQDQFPEPPSLKLSYKCSVCNKAFSSY 112 (267)
Q Consensus 51 eee~~a~cl~~ls~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~p~~C~~C~k~F~~~ 112 (267)
+.+.|..|.-.++.+. ...... .....-.-.+.|..||+.|...
T Consensus 40 ~pe~L~faf~~~~~~T~~~ega~------------------L~Ie~vp~~~~C~~Cg~~~~~~ 84 (117)
T PRK00564 40 DKSLFVSAFETFREESLVCKDAI------------------LDIVDEKVELECKDCSHVFKPN 84 (117)
T ss_pred CHHHHHHHHHHHhcCCcccCCCE------------------EEEEecCCEEEhhhCCCccccC
Confidence 5688999999988887 433221 0111122348999999887654
No 132
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=35.95 E-value=30 Score=31.56 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=27.0
Q ss_pred cceeccccccccCChHHHHHhHHh-hCCCCC--CCCCCC
Q 024499 98 LSYKCSVCNKAFSSYQALGGHKAS-HRKNAA--DASASP 133 (267)
Q Consensus 98 ~p~~C~~C~k~F~~~~~L~~H~~~-H~~~k~--~c~~C~ 133 (267)
.-|.|++|++.=.....|..|... |..-.. .|..|.
T Consensus 78 qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~ 116 (381)
T KOG1280|consen 78 QSFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCA 116 (381)
T ss_pred ccccCCcccccccchhHHHHHhhhcCcccCcceeeeccc
Confidence 369999999998888889999865 544333 666664
No 133
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=35.84 E-value=23 Score=29.21 Aligned_cols=12 Identities=17% Similarity=0.573 Sum_probs=8.3
Q ss_pred ceeCccccccCC
Q 024499 157 THECSICHKSFP 168 (267)
Q Consensus 157 p~~C~~C~k~F~ 168 (267)
-|.|+.||....
T Consensus 136 ~F~Cp~Cg~~L~ 147 (178)
T PRK06266 136 GFRCPQCGEMLE 147 (178)
T ss_pred CCcCCCCCCCCe
Confidence 478888876543
No 134
>COG1773 Rubredoxin [Energy production and conversion]
Probab=35.79 E-value=18 Score=23.90 Aligned_cols=13 Identities=31% Similarity=1.014 Sum_probs=10.8
Q ss_pred ceeccccccccCC
Q 024499 99 SYKCSVCNKAFSS 111 (267)
Q Consensus 99 p~~C~~C~k~F~~ 111 (267)
.|+|.+||..|.-
T Consensus 3 ~~~C~~CG~vYd~ 15 (55)
T COG1773 3 RWRCSVCGYVYDP 15 (55)
T ss_pred ceEecCCceEecc
Confidence 5999999998753
No 135
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=35.32 E-value=19 Score=27.77 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.9
Q ss_pred CCCceeCccccccCCChhhHHhhhhh
Q 024499 154 GGRTHECSICHKSFPTGQALGGHKRC 179 (267)
Q Consensus 154 g~kp~~C~~C~k~F~~~~~L~~H~r~ 179 (267)
|.-.|.|-.|.+-|....+|..|.++
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHhc
Confidence 44569999999999999999999874
No 137
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=35.06 E-value=30 Score=27.94 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=16.1
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccC
Q 024499 128 DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSF 167 (267)
Q Consensus 128 ~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F 167 (267)
.|+.|+..|.... .+. --|.|+.||...
T Consensus 111 ~Cp~c~~r~tf~e---A~~---------~~F~Cp~Cg~~L 138 (158)
T TIGR00373 111 ICPNMCVRFTFNE---AME---------LNFTCPRCGAML 138 (158)
T ss_pred ECCCCCcEeeHHH---HHH---------cCCcCCCCCCEe
Confidence 5666665555443 221 248888888654
No 138
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=34.30 E-value=9.5 Score=29.92 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=20.0
Q ss_pred eeccccccccCChHHHHHhHHhhCCCCC
Q 024499 100 YKCSVCNKAFSSYQALGGHKASHRKNAA 127 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 127 (267)
..|-+|||.|+ .|++|..+|.+-.+
T Consensus 77 IicLEDGkkfK---SLKRHL~t~~gmTP 101 (148)
T COG4957 77 IICLEDGKKFK---SLKRHLTTHYGLTP 101 (148)
T ss_pred EEEeccCcchH---HHHHHHhcccCCCH
Confidence 57999999986 58999999875444
No 139
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=33.47 E-value=24 Score=33.27 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=24.2
Q ss_pred ccCCCCCceeCcccc-ccCCChhhHHhhhh
Q 024499 150 SSGSGGRTHECSICH-KSFPTGQALGGHKR 178 (267)
Q Consensus 150 ~~h~g~kp~~C~~C~-k~F~~~~~L~~H~r 178 (267)
+.|.-.+-|.|.||| +++.-..++.+|..
T Consensus 394 KLHGL~~ey~CEICGNy~Y~GrkaF~RHF~ 423 (497)
T KOG2636|consen 394 KLHGLDIEYNCEICGNYVYKGRKAFDRHFN 423 (497)
T ss_pred hhcCCCcccceeeccCccccCcHHHHHHhH
Confidence 456566789999999 89999999999964
No 140
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=32.79 E-value=19 Score=22.03 Aligned_cols=15 Identities=13% Similarity=0.436 Sum_probs=11.7
Q ss_pred CCCCceeCccccccC
Q 024499 153 SGGRTHECSICHKSF 167 (267)
Q Consensus 153 ~g~kp~~C~~C~k~F 167 (267)
...++..|++|+..|
T Consensus 25 ~~~~~~~CpYCg~~y 39 (40)
T PF10276_consen 25 DEPGPVVCPYCGTRY 39 (40)
T ss_dssp TTTCEEEETTTTEEE
T ss_pred CCCCeEECCCCCCEE
Confidence 333578999999887
No 141
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=32.54 E-value=39 Score=20.67 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=18.3
Q ss_pred eeccccccccCC--hHHHHHhHHhhC
Q 024499 100 YKCSVCNKAFSS--YQALGGHKASHR 123 (267)
Q Consensus 100 ~~C~~C~k~F~~--~~~L~~H~~~H~ 123 (267)
-.|..||-.|.. ...-..|.+-|.
T Consensus 14 ~~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 14 TTCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred cCCCCCCCEECCCCHHHHHHHHHHHh
Confidence 589999999875 456667877774
No 142
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=32.04 E-value=23 Score=26.42 Aligned_cols=16 Identities=31% Similarity=0.870 Sum_probs=12.9
Q ss_pred ceeCccccccCCChhh
Q 024499 157 THECSICHKSFPTGQA 172 (267)
Q Consensus 157 p~~C~~C~k~F~~~~~ 172 (267)
||.|..||..|...+.
T Consensus 2 pH~CtrCG~vf~~g~~ 17 (112)
T COG3364 2 PHQCTRCGEVFDDGSE 17 (112)
T ss_pred CceecccccccccccH
Confidence 6889999999988644
No 143
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=31.78 E-value=22 Score=25.92 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=13.2
Q ss_pred CCCceeCccccccCCCh
Q 024499 154 GGRTHECSICHKSFPTG 170 (267)
Q Consensus 154 g~kp~~C~~C~k~F~~~ 170 (267)
+.-.+.|..|++.|.-.
T Consensus 51 a~GIW~C~~C~~~~AGG 67 (90)
T PTZ00255 51 AVGIWRCKGCKKTVAGG 67 (90)
T ss_pred eeEEEEcCCCCCEEeCC
Confidence 34579999999998754
No 144
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=31.77 E-value=29 Score=27.71 Aligned_cols=13 Identities=46% Similarity=0.866 Sum_probs=7.1
Q ss_pred eeCccccccCCCh
Q 024499 158 HECSICHKSFPTG 170 (267)
Q Consensus 158 ~~C~~C~k~F~~~ 170 (267)
-+|..|++.|++-
T Consensus 29 ReC~~C~~RFTTy 41 (147)
T TIGR00244 29 RECLECHERFTTF 41 (147)
T ss_pred ccCCccCCcccee
Confidence 3555565555543
No 145
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=31.45 E-value=31 Score=27.70 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=5.4
Q ss_pred eCccccccCCC
Q 024499 159 ECSICHKSFPT 169 (267)
Q Consensus 159 ~C~~C~k~F~~ 169 (267)
+|..|++.|++
T Consensus 30 eC~~C~~RFTT 40 (156)
T COG1327 30 ECLECGERFTT 40 (156)
T ss_pred cccccccccch
Confidence 45555555543
No 146
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=31.26 E-value=17 Score=36.82 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=19.9
Q ss_pred eeccccccccCChHHHHHhHHhhCCCCCCCCCCCCCCCCC
Q 024499 100 YKCSVCNKAFSSYQALGGHKASHRKNAADASASPNAAAAS 139 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~c~~C~~~f~~~ 139 (267)
-.|..|++.|.....+...+ .| .|..||..|...
T Consensus 461 dtC~~C~kkFfSlsK~L~~R-KH-----HCRkCGrVFC~~ 494 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTR-AH-----HCRSCGIRLCVF 494 (1374)
T ss_pred CcccCcCCcccccccccccc-cc-----cccCCccccCcc
Confidence 45999999997652211222 22 366666666544
No 147
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=31.16 E-value=27 Score=22.42 Aligned_cols=12 Identities=33% Similarity=1.090 Sum_probs=9.3
Q ss_pred cceecccccccc
Q 024499 98 LSYKCSVCNKAF 109 (267)
Q Consensus 98 ~p~~C~~C~k~F 109 (267)
..|+|-.||+.|
T Consensus 5 ~~Y~C~~Cg~~~ 16 (49)
T COG1996 5 MEYKCARCGREV 16 (49)
T ss_pred EEEEhhhcCCee
Confidence 458888888887
No 148
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.10 E-value=15 Score=35.41 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=25.4
Q ss_pred eeccccccccCChHHHHHhHHhhCCCCC-CCCCCCCCCCCCCCCCCcccccccCCCCCceeCcccccc
Q 024499 100 YKCSVCNKAFSSYQALGGHKASHRKNAA-DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKS 166 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~-~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~ 166 (267)
..|..||..+.... -...+..|..... .|..|+. ...-|..|+.|+..
T Consensus 214 ~~C~~Cg~~~~C~~-C~~~l~~h~~~~~l~Ch~Cg~------------------~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 214 LLCRSCGYILCCPN-CDVSLTYHKKEGKLRCHYCGY------------------QEPIPKTCPQCGSE 262 (505)
T ss_pred eEhhhCcCccCCCC-CCCceEEecCCCeEEcCCCcC------------------cCCCCCCCCCCCCC
Confidence 36777777665431 1122223332222 5666654 33457789999763
No 149
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=30.98 E-value=20 Score=22.10 Aligned_cols=16 Identities=38% Similarity=0.887 Sum_probs=10.7
Q ss_pred cceeccccccccCChH
Q 024499 98 LSYKCSVCNKAFSSYQ 113 (267)
Q Consensus 98 ~p~~C~~C~k~F~~~~ 113 (267)
.+|+|..|++.|-...
T Consensus 12 ~~~~C~~C~~~FC~~H 27 (43)
T PF01428_consen 12 LPFKCKHCGKSFCLKH 27 (43)
T ss_dssp SHEE-TTTS-EE-TTT
T ss_pred CCeECCCCCcccCccc
Confidence 5799999999998654
No 150
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.69 E-value=12 Score=37.24 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=39.5
Q ss_pred ccccccccCChHHHHHhHH-hhCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCcccccc
Q 024499 102 CSVCNKAFSSYQALGGHKA-SHRKNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKS 166 (267)
Q Consensus 102 C~~C~k~F~~~~~L~~H~~-~H~~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~ 166 (267)
|..||=.|.-..+|=.-+. +-....+.|+.|.+.+.... +- |.| ..|.-|+.||-.
T Consensus 126 CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~---nR----RfH--AQp~aCp~CGP~ 182 (750)
T COG0068 126 CTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPL---NR----RFH--AQPIACPKCGPH 182 (750)
T ss_pred cCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCcc---cc----ccc--cccccCcccCCC
Confidence 9999999998877766543 22345559999998777654 32 233 268899999964
No 151
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=30.53 E-value=35 Score=24.91 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccc
Q 024499 128 DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHK 165 (267)
Q Consensus 128 ~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k 165 (267)
.|..||..|.... -.+|-.|+.|.-
T Consensus 60 ~CkkCGfef~~~~-------------ik~pSRCP~CKS 84 (97)
T COG3357 60 RCKKCGFEFRDDK-------------IKKPSRCPKCKS 84 (97)
T ss_pred hhcccCccccccc-------------cCCcccCCcchh
Confidence 7888888877522 235778888853
No 152
>PLN02294 cytochrome c oxidase subunit Vb
Probab=30.30 E-value=24 Score=28.91 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=13.5
Q ss_pred CCcceeccccccccCCh
Q 024499 96 LKLSYKCSVCNKAFSSY 112 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~ 112 (267)
..++++|.+||..|.-+
T Consensus 138 kGkp~RCpeCG~~fkL~ 154 (174)
T PLN02294 138 KGKSFECPVCTQYFELE 154 (174)
T ss_pred CCCceeCCCCCCEEEEE
Confidence 34689999999998743
No 153
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=30.15 E-value=23 Score=26.85 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccccccccCChHH
Q 024499 51 EEEYMALCLIMLARGTTTANTAPAERTPSLAPEQRPQDQFPEPPSLKLSYKCSVCNKAFSSYQA 114 (267)
Q Consensus 51 eee~~a~cl~~ls~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~p~~C~~C~k~F~~~~~ 114 (267)
+.|.+..|.-.++.+....... .....-.-.+.|..||+.|.-...
T Consensus 40 ~pe~L~f~f~~~~~~T~~e~a~------------------L~Ie~~p~~~~C~~Cg~~~~~~~~ 85 (113)
T PF01155_consen 40 EPEALRFAFEVLAEGTILEGAE------------------LEIEEVPARARCRDCGHEFEPDEF 85 (113)
T ss_dssp -HHHHHHHHHHHHCCSTTTT-E------------------EEEEEE--EEEETTTS-EEECHHC
T ss_pred CHHHHHHHHHHHhCCCCccCCE------------------EEEEecCCcEECCCCCCEEecCCC
Confidence 5688999999999886554321 000011224899999999976553
No 154
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=30.11 E-value=42 Score=22.61 Aligned_cols=17 Identities=24% Similarity=0.558 Sum_probs=12.8
Q ss_pred CCCceeCccccccCCCh
Q 024499 154 GGRTHECSICHKSFPTG 170 (267)
Q Consensus 154 g~kp~~C~~C~k~F~~~ 170 (267)
..+.|.|+.||..+.+.
T Consensus 43 ~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 43 SGRVFTCPNCGFEMDRD 59 (69)
T ss_pred ccceEEcCCCCCEECcH
Confidence 45789999999876543
No 155
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=29.74 E-value=58 Score=26.18 Aligned_cols=50 Identities=30% Similarity=0.426 Sum_probs=22.8
Q ss_pred CcceeccccccccCC------hHHHHHhHH-hhCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccc
Q 024499 97 KLSYKCSVCNKAFSS------YQALGGHKA-SHRKNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHK 165 (267)
Q Consensus 97 ~~p~~C~~C~k~F~~------~~~L~~H~~-~H~~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k 165 (267)
.-..+|..|+|.|.. .+++..|+. ++++ ....|.-.-.|+-..+|-.||-
T Consensus 12 ~~vv~C~~c~kWFCNg~~~~s~SHIv~HLv~srh~-------------------ev~LH~~s~lgdt~leCy~Cg~ 68 (152)
T PF09416_consen 12 SCVVKCNTCNKWFCNGRGNTSGSHIVNHLVRSRHK-------------------EVSLHPDSPLGDTVLECYNCGS 68 (152)
T ss_dssp CCEEEETTTTEEEES--TTSSS-HHHHHHHHHT----------------------EEE-TTSTT-S-B---TTT--
T ss_pred ccEeEcCCCCcEeecCCCCCcccHHHHHHHHccCC-------------------ceeeCCCCCCCCcEEEEEecCC
Confidence 445889999999964 345555543 2211 2223333334666788888874
No 156
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=29.42 E-value=24 Score=24.58 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=14.9
Q ss_pred CCCCceeCc--cccccCCChhhH
Q 024499 153 SGGRTHECS--ICHKSFPTGQAL 173 (267)
Q Consensus 153 ~g~kp~~C~--~C~k~F~~~~~L 173 (267)
..++-++|. .||..|.....+
T Consensus 23 ~~~~Y~qC~N~eCg~tF~t~es~ 45 (72)
T PRK09678 23 TKERYHQCQNVNCSATFITYESV 45 (72)
T ss_pred hheeeeecCCCCCCCEEEEEEEE
Confidence 345668888 799998766544
No 157
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=29.37 E-value=21 Score=26.06 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=13.1
Q ss_pred CCceeCccccccCCChh
Q 024499 155 GRTHECSICHKSFPTGQ 171 (267)
Q Consensus 155 ~kp~~C~~C~k~F~~~~ 171 (267)
.-.++|..|++.|.-..
T Consensus 51 ~GIW~C~~C~~~~AGGA 67 (91)
T TIGR00280 51 TGIWTCRKCGAKFAGGA 67 (91)
T ss_pred eEEEEcCCCCCEEeCCc
Confidence 45799999999987543
No 158
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=29.26 E-value=53 Score=20.63 Aligned_cols=16 Identities=31% Similarity=0.519 Sum_probs=11.5
Q ss_pred CceeCccccccCCChh
Q 024499 156 RTHECSICHKSFPTGQ 171 (267)
Q Consensus 156 kp~~C~~C~k~F~~~~ 171 (267)
.-|.|+.||..+.-..
T Consensus 19 ~~~vC~~Cg~~~~~~~ 34 (52)
T smart00661 19 RRFVCRKCGYEEPIEQ 34 (52)
T ss_pred CEEECCcCCCeEECCC
Confidence 3688999997765443
No 159
>KOG4377 consensus Zn-finger protein [General function prediction only]
Probab=29.06 E-value=60 Score=30.37 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=49.4
Q ss_pred CCcceecc--ccccccCChHHHHHhHHhhCCCCC-------------CC--CCCCCCCCCCCCCCCcccccccCCC----
Q 024499 96 LKLSYKCS--VCNKAFSSYQALGGHKASHRKNAA-------------DA--SASPNAAAASDVTPPPSATASSGSG---- 154 (267)
Q Consensus 96 g~~p~~C~--~C~k~F~~~~~L~~H~~~H~~~k~-------------~c--~~C~~~f~~~~~~~~L~~H~~~h~g---- 154 (267)
+..-|.|- .|+..|..+..+.+|...|.+... .| ..|.+.. . +...|...|+.
T Consensus 268 ~rEhyhcl~e~C~ykr~~k~DvirH~~~hkkrdnsL~dgf~rfs~syhC~~~~C~ksT---s---dV~~h~nFht~~~n~ 341 (480)
T KOG4377|consen 268 GREHYHCLNEYCFYKRGQKNDVIRHVEIHKKRDNSLIDGFHRFSNSYHCTGQICEKST---S---DVLLHDNFHTDKRNN 341 (480)
T ss_pred cchhhcccCccccccccchhhhHHHHHHHhhcccccccchhhcCccchhhhcccCccc---c---cccccCccccccccC
Confidence 45568884 699888889999999998875332 12 3566622 2 44555555542
Q ss_pred -CC--ceeCccccccCCChhhHHhhhhhcccC
Q 024499 155 -GR--THECSICHKSFPTGQALGGHKRCHYEG 183 (267)
Q Consensus 155 -~k--p~~C~~C~k~F~~~~~L~~H~r~H~~~ 183 (267)
-+ -|.|..|+=++..+ ...|...|...
T Consensus 342 GfrrthfhC~r~gCTdtfK--~~khk~yh~kd 371 (480)
T KOG4377|consen 342 GFRRTHFHCQRIGCTDTFK--DSKHKPYHYKD 371 (480)
T ss_pred ceecceeEEeccCCccccc--cccccccccCc
Confidence 22 47898887444433 55666666543
No 160
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=28.76 E-value=39 Score=26.34 Aligned_cols=16 Identities=25% Similarity=0.710 Sum_probs=11.5
Q ss_pred CCCceeCccccccCCC
Q 024499 154 GGRTHECSICHKSFPT 169 (267)
Q Consensus 154 g~kp~~C~~C~k~F~~ 169 (267)
|..-|.|..|++.|..
T Consensus 50 ~~qRyrC~~C~~tf~~ 65 (129)
T COG3677 50 GHQRYKCKSCGSTFTV 65 (129)
T ss_pred cccccccCCcCcceee
Confidence 3456888888888864
No 161
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=28.07 E-value=35 Score=32.40 Aligned_cols=22 Identities=45% Similarity=0.783 Sum_probs=20.0
Q ss_pred eeccccccccCChHHHHHhHHh
Q 024499 100 YKCSVCNKAFSSYQALGGHKAS 121 (267)
Q Consensus 100 ~~C~~C~k~F~~~~~L~~H~~~ 121 (267)
+-|.+|+|.|.+..+|..|..+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEeeccccccchHHHHhhHHH
Confidence 8899999999999999999764
No 162
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=26.87 E-value=29 Score=27.72 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=4.8
Q ss_pred ceeCccccc
Q 024499 157 THECSICHK 165 (267)
Q Consensus 157 p~~C~~C~k 165 (267)
.-.|+.||.
T Consensus 130 l~~Cp~C~~ 138 (146)
T PF07295_consen 130 LPPCPKCGH 138 (146)
T ss_pred CCCCCCCCC
Confidence 345666654
No 163
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.52 E-value=32 Score=32.64 Aligned_cols=21 Identities=33% Similarity=0.735 Sum_probs=19.3
Q ss_pred eeCccccccCCChhhHHhhhh
Q 024499 158 HECSICHKSFPTGQALGGHKR 178 (267)
Q Consensus 158 ~~C~~C~k~F~~~~~L~~H~r 178 (267)
+.|.+|.|+|.+-.+|..|..
T Consensus 293 lyC~vCnKsFKseKq~kNHEn 313 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHEN 313 (508)
T ss_pred eEEeeccccccchHHHHhhHH
Confidence 889999999999999998874
No 164
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=25.95 E-value=68 Score=19.08 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=14.3
Q ss_pred cccccccCCCCCceeCccc
Q 024499 145 PSATASSGSGGRTHECSIC 163 (267)
Q Consensus 145 L~~H~~~h~g~kp~~C~~C 163 (267)
+.+|-+...|..-|.|..|
T Consensus 17 v~k~G~~~~G~qryrC~~C 35 (36)
T PF03811_consen 17 VKKNGKSPSGHQRYRCKDC 35 (36)
T ss_pred ceeCCCCCCCCEeEecCcC
Confidence 5566666677788999887
No 165
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=25.93 E-value=31 Score=22.14 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=12.9
Q ss_pred CcceeccccccccCChH
Q 024499 97 KLSYKCSVCNKAFSSYQ 113 (267)
Q Consensus 97 ~~p~~C~~C~k~F~~~~ 113 (267)
++.+.|..||..|.--.
T Consensus 2 Dk~l~C~dCg~~FvfTa 18 (49)
T PF13451_consen 2 DKTLTCKDCGAEFVFTA 18 (49)
T ss_pred CeeEEcccCCCeEEEeh
Confidence 46689999999886543
No 166
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=25.15 E-value=39 Score=30.97 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=23.1
Q ss_pred ccCCCCCceeCcccc-ccCCChhhHHhhhh
Q 024499 150 SSGSGGRTHECSICH-KSFPTGQALGGHKR 178 (267)
Q Consensus 150 ~~h~g~kp~~C~~C~-k~F~~~~~L~~H~r 178 (267)
+.|.-.+-|.|.+|| +.+.-...+.+|..
T Consensus 367 klhgLd~ef~CEICgNyvy~GR~~FdrHF~ 396 (470)
T COG5188 367 KLHGLDIEFECEICGNYVYYGRDRFDRHFE 396 (470)
T ss_pred HhcCCCcceeeeecccccccchHHHHhhhh
Confidence 455557789999999 88888888888863
No 167
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=24.92 E-value=39 Score=19.92 Aligned_cols=13 Identities=8% Similarity=-0.069 Sum_probs=5.6
Q ss_pred CCCCCCCCCCCCC
Q 024499 128 DASASPNAAAASD 140 (267)
Q Consensus 128 ~c~~C~~~f~~~~ 140 (267)
.|..|++.|..+.
T Consensus 5 ~C~eC~~~f~dSy 17 (34)
T PF01286_consen 5 KCDECGKPFMDSY 17 (34)
T ss_dssp E-TTT--EES-SS
T ss_pred hHhHhCCHHHHHH
Confidence 5666777666554
No 168
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=24.57 E-value=84 Score=28.38 Aligned_cols=49 Identities=12% Similarity=0.242 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChhhHHhhhhhcc
Q 024499 128 DASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQALGGHKRCHY 181 (267)
Q Consensus 128 ~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~~L~~H~r~H~ 181 (267)
.|-.|...|.... .-..-.. +..-.|.|..|...|......-.|...|.
T Consensus 364 ~Cf~CQ~~fp~~~---~~~~~~~--~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~ 412 (421)
T COG5151 364 HCFVCQGPFPKPP---VSPFDES--TSSGRYQCELCKSTFCSDCDVFIHETLHF 412 (421)
T ss_pred cceeccCCCCCCC---CCccccc--ccccceechhhhhhhhhhhHHHHHHHHhh
Confidence 4777777776433 1000011 12345999999999999999999988775
No 169
>PLN02748 tRNA dimethylallyltransferase
Probab=24.42 E-value=45 Score=31.98 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=21.7
Q ss_pred Ccceecccccc-ccCChHHHHHhHHh
Q 024499 97 KLSYKCSVCNK-AFSSYQALGGHKAS 121 (267)
Q Consensus 97 ~~p~~C~~C~k-~F~~~~~L~~H~~~ 121 (267)
-+.|.|++|++ ++........|.++
T Consensus 416 ~~~~~Ce~C~~~~~~G~~eW~~Hlks 441 (468)
T PLN02748 416 WTQYVCEACGNKVLRGAHEWEQHKQG 441 (468)
T ss_pred cccccccCCCCcccCCHHHHHHHhcc
Confidence 47799999997 89999999999865
No 170
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=24.19 E-value=47 Score=31.39 Aligned_cols=26 Identities=23% Similarity=0.672 Sum_probs=21.8
Q ss_pred CCCcceeccccc-cccCChHHHHHhHH
Q 024499 95 SLKLSYKCSVCN-KAFSSYQALGGHKA 120 (267)
Q Consensus 95 ~g~~p~~C~~C~-k~F~~~~~L~~H~~ 120 (267)
.-..-|.|.+|| +++.-..++.+|..
T Consensus 397 GL~~ey~CEICGNy~Y~GrkaF~RHF~ 423 (497)
T KOG2636|consen 397 GLDIEYNCEICGNYVYKGRKAFDRHFN 423 (497)
T ss_pred CCCcccceeeccCccccCcHHHHHHhH
Confidence 445669999999 89999999999965
No 171
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=24.08 E-value=26 Score=29.47 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=0.0
Q ss_pred CCCCCceeCccccc-cCCChhhHHhhhh--hcc
Q 024499 152 GSGGRTHECSICHK-SFPTGQALGGHKR--CHY 181 (267)
Q Consensus 152 h~g~kp~~C~~C~k-~F~~~~~L~~H~r--~H~ 181 (267)
|.=.+.|.|.+||- .|.-+.++.+|.. +|.
T Consensus 96 hGL~~ey~CEICGN~~Y~GrkaFekHF~E~rH~ 128 (196)
T PF11931_consen 96 HGLGVEYKCEICGNQSYKGRKAFEKHFQEWRHA 128 (196)
T ss_dssp ---------------------------------
T ss_pred hCCCCeeeeEeCCCcceecHHHHHHhcChhHHH
Confidence 33457899999984 5667778888864 554
No 172
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=23.93 E-value=40 Score=25.55 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccccccccCC
Q 024499 51 EEEYMALCLIMLARGTTTANTAPAERTPSLAPEQRPQDQFPEPPSLKLSYKCSVCNKAFSS 111 (267)
Q Consensus 51 eee~~a~cl~~ls~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~p~~C~~C~k~F~~ 111 (267)
+.|.+..|.-+++.+....... .....-...+.|..|+..|..
T Consensus 40 ~pe~L~f~f~~~~~~T~~egA~------------------L~I~~vp~~~~C~~Cg~~~~~ 82 (113)
T PRK12380 40 EESAVRFSFEIVCHGTVAQGCD------------------LHIVYKPAQAWCWDCSQVVEI 82 (113)
T ss_pred CHHHHHHHHHHHhCCCccCCCE------------------EEEEeeCcEEEcccCCCEEec
Confidence 5688999999888876544221 001111234899999987754
No 173
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=23.91 E-value=29 Score=25.31 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=12.6
Q ss_pred CCceeCccccccCCCh
Q 024499 155 GRTHECSICHKSFPTG 170 (267)
Q Consensus 155 ~kp~~C~~C~k~F~~~ 170 (267)
.-.+.|..|++.|.-.
T Consensus 52 ~GIW~C~~C~~~~AGG 67 (90)
T PRK03976 52 TGIWECRKCGAKFAGG 67 (90)
T ss_pred EEEEEcCCCCCEEeCC
Confidence 3469999999998754
No 174
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.54 E-value=53 Score=34.35 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=8.3
Q ss_pred cceeccccccc
Q 024499 98 LSYKCSVCNKA 108 (267)
Q Consensus 98 ~p~~C~~C~k~ 108 (267)
....|..||+.
T Consensus 625 g~RfCpsCG~~ 635 (1121)
T PRK04023 625 GRRKCPSCGKE 635 (1121)
T ss_pred cCccCCCCCCc
Confidence 34778888877
No 175
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=23.19 E-value=38 Score=20.27 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=7.4
Q ss_pred Ccceecccccccc
Q 024499 97 KLSYKCSVCNKAF 109 (267)
Q Consensus 97 ~~p~~C~~C~k~F 109 (267)
.+-|+|.+||...
T Consensus 4 ~~~YkC~~CGniV 16 (36)
T PF06397_consen 4 GEFYKCEHCGNIV 16 (36)
T ss_dssp TEEEE-TTT--EE
T ss_pred ccEEEccCCCCEE
Confidence 3569999999764
No 176
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.74 E-value=85 Score=24.19 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeccccccccCCh
Q 024499 51 EEEYMALCLIMLARGTTTANTAPAERTPSLAPEQRPQDQFPEPPSLKLSYKCSVCNKAFSSY 112 (267)
Q Consensus 51 eee~~a~cl~~ls~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~p~~C~~C~k~F~~~ 112 (267)
+.+.+..|.-+++++....... .....-.-.+.| .|+..|...
T Consensus 40 ~pe~L~faf~~~~~gT~~egA~------------------L~I~~vp~~~~C-~Cg~~~~~~ 82 (124)
T PRK00762 40 NPEQLRFMLDVLAEGTIAEDAD------------------LIVEMIPVEIEC-ECGYEGVVD 82 (124)
T ss_pred CHHHHHHHHHHHhCCCCcCCCE------------------EEEEecCeeEEe-eCcCccccc
Confidence 5688999999888876554221 011112234899 999887654
No 177
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=22.43 E-value=46 Score=25.02 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.8
Q ss_pred CCcceeccccccccCChHHHHHhHHh
Q 024499 96 LKLSYKCSVCNKAFSSYQALGGHKAS 121 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~~~L~~H~~~ 121 (267)
|-..|-|-.|.+-|-...+|..|.+.
T Consensus 52 GlGqhYCieCaryf~t~~aL~~Hkkg 77 (126)
T COG5112 52 GLGQHYCIECARYFITEKALMEHKKG 77 (126)
T ss_pred CCceeeeehhHHHHHHHHHHHHHhcc
Confidence 56668999999999999999999874
No 178
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=22.35 E-value=46 Score=32.59 Aligned_cols=9 Identities=11% Similarity=0.205 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 024499 52 EEYMALCLI 60 (267)
Q Consensus 52 ee~~a~cl~ 60 (267)
.+++..|+.
T Consensus 108 ~~~L~~~~r 116 (1004)
T KOG0782|consen 108 NPDLTNCQR 116 (1004)
T ss_pred ChhHHHHHH
Confidence 355666654
No 179
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=22.20 E-value=62 Score=24.42 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChh
Q 024499 127 ADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQ 171 (267)
Q Consensus 127 ~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~ 171 (267)
|.|+.|...|.+.. | -.|.|+.|+..+....
T Consensus 3 p~CP~C~seytY~d-------------g-~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 3 PPCPKCNSEYTYHD-------------G-TQLICPSCLYEWNENE 33 (109)
T ss_pred CcCCcCCCcceEec-------------C-CeeECccccccccccc
Confidence 46888887777655 2 3599999998886553
No 180
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=21.92 E-value=62 Score=29.22 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=8.9
Q ss_pred CCcceeccccccc
Q 024499 96 LKLSYKCSVCNKA 108 (267)
Q Consensus 96 g~~p~~C~~C~k~ 108 (267)
++..-.|++||-.
T Consensus 184 ~~~~~~CPvCGs~ 196 (309)
T PRK03564 184 GEQRQFCPVCGSM 196 (309)
T ss_pred ccCCCCCCCCCCc
Confidence 4455678888855
No 181
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=21.51 E-value=30 Score=34.93 Aligned_cols=56 Identities=13% Similarity=0.244 Sum_probs=35.2
Q ss_pred ccccccccCChHHHHHhHHhhC--CCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccC
Q 024499 102 CSVCNKAFSSYQALGGHKASHR--KNAADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSF 167 (267)
Q Consensus 102 C~~C~k~F~~~~~L~~H~~~H~--~~k~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F 167 (267)
|..||=.|.-...|-.-+ .++ ...+.|..|-+-+.... +. |.| -.+..|..||-..
T Consensus 93 Ct~CGPr~~i~~~lpydr-~~t~m~~f~~C~~C~~ey~~p~---~r----r~h--~~~~~C~~Cgp~l 150 (711)
T TIGR00143 93 CTHCGPRFTIIEALPYDR-ENTSMADFPLCPDCAKEYKDPL---DR----RFH--AQPIACPRCGPQL 150 (711)
T ss_pred ccCCCCCeEEeecCCCCC-CCcCCCCCcCCHHHHHHhcCCc---cc----cCC--CCCccCCCCCcEE
Confidence 899999988766655443 233 23338888887765543 21 222 2467899998654
No 182
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.39 E-value=1.6e+02 Score=27.02 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=37.7
Q ss_pred eccccccccCChHHHHHhHHhhCCCCCCCCCCCCCC-------CCCCCCCCcccccccCCCCCceeCcc--c--c--ccC
Q 024499 101 KCSVCNKAFSSYQALGGHKASHRKNAADASASPNAA-------AASDVTPPPSATASSGSGGRTHECSI--C--H--KSF 167 (267)
Q Consensus 101 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~c~~C~~~f-------~~~~~~~~L~~H~~~h~g~kp~~C~~--C--~--k~F 167 (267)
.|..|.+.|-....|..|+|..+. .|-+|++.- ..-. .|..|-+ .--|.|.+ | + ..|
T Consensus 222 ~C~FC~~~FYdDDEL~~HcR~~HE---~ChICD~v~p~~~QYFK~Y~---~Le~HF~----~~hy~ct~qtc~~~k~~vf 291 (493)
T COG5236 222 LCIFCKIYFYDDDELRRHCRLRHE---ACHICDMVGPIRYQYFKSYE---DLEAHFR----NAHYCCTFQTCRVGKCYVF 291 (493)
T ss_pred hhhhccceecChHHHHHHHHhhhh---hhhhhhccCccchhhhhCHH---HHHHHhh----cCceEEEEEEEecCcEEEe
Confidence 477777777777777777764321 344444332 1111 3333322 22355643 4 2 357
Q ss_pred CChhhHHhhhhh
Q 024499 168 PTGQALGGHKRC 179 (267)
Q Consensus 168 ~~~~~L~~H~r~ 179 (267)
...-.|..|+-.
T Consensus 292 ~~~~el~~h~~~ 303 (493)
T COG5236 292 PYHTELLEHLTR 303 (493)
T ss_pred ccHHHHHHHHHH
Confidence 777788888753
No 183
>PRK10220 hypothetical protein; Provisional
Probab=21.35 E-value=83 Score=23.80 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccCCCCCceeCccccccCCChh
Q 024499 127 ADASASPNAAAASDVTPPPSATASSGSGGRTHECSICHKSFPTGQ 171 (267)
Q Consensus 127 ~~c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k~F~~~~ 171 (267)
|.|+.|...|.+.. + -.|.|+.|+..+....
T Consensus 4 P~CP~C~seytY~d-------------~-~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 4 PHCPKCNSEYTYED-------------N-GMYICPECAHEWNDAE 34 (111)
T ss_pred CcCCCCCCcceEcC-------------C-CeEECCcccCcCCccc
Confidence 57888888777655 2 3599999998887654
No 184
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=21.31 E-value=51 Score=25.05 Aligned_cols=19 Identities=11% Similarity=0.286 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHhCCCCCC
Q 024499 51 EEEYMALCLIMLARGTTTA 69 (267)
Q Consensus 51 eee~~a~cl~~ls~~~~~~ 69 (267)
+.+.|..|.-.++.+....
T Consensus 40 ~p~~L~faf~~~~~~t~~e 58 (115)
T TIGR00100 40 NPSQLQFAFEVVREGTVAE 58 (115)
T ss_pred CHHHHHHHHHHHhCCCccC
Confidence 5678888888888776543
No 185
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=21.27 E-value=47 Score=21.09 Aligned_cols=12 Identities=33% Similarity=1.124 Sum_probs=9.7
Q ss_pred eeccccccccCC
Q 024499 100 YKCSVCNKAFSS 111 (267)
Q Consensus 100 ~~C~~C~k~F~~ 111 (267)
|+|.+|+..|.-
T Consensus 2 y~C~~CgyvYd~ 13 (47)
T PF00301_consen 2 YQCPVCGYVYDP 13 (47)
T ss_dssp EEETTTSBEEET
T ss_pred cCCCCCCEEEcC
Confidence 889999988754
No 186
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=20.98 E-value=34 Score=25.73 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=21.7
Q ss_pred CCCceeCccccccCCChhhHHhhhh
Q 024499 154 GGRTHECSICHKSFPTGQALGGHKR 178 (267)
Q Consensus 154 g~kp~~C~~C~k~F~~~~~L~~H~r 178 (267)
|.-.|-|-.|.+-|-+..+|..|++
T Consensus 52 GlGqhYCieCaryf~t~~aL~~Hkk 76 (126)
T COG5112 52 GLGQHYCIECARYFITEKALMEHKK 76 (126)
T ss_pred CCceeeeehhHHHHHHHHHHHHHhc
Confidence 4445889999999999999999986
No 187
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=20.64 E-value=1.2e+02 Score=27.33 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.7
Q ss_pred CCcceeccccccccCChHHHHHhHHhh
Q 024499 96 LKLSYKCSVCNKAFSSYQALGGHKASH 122 (267)
Q Consensus 96 g~~p~~C~~C~k~F~~~~~L~~H~~~H 122 (267)
....|+|+.|...|....+.-.|...|
T Consensus 385 ss~rY~Ce~CK~~FC~dCdvfiHe~Lh 411 (421)
T COG5151 385 SSGRYQCELCKSTFCSDCDVFIHETLH 411 (421)
T ss_pred cccceechhhhhhhhhhhHHHHHHHHh
Confidence 345699999999999999999998888
No 188
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=20.52 E-value=1.2e+02 Score=27.58 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred ceeccccccccCChHHHHHhHHhhCCCCC-------C------CCCCCCCCCCCCCCCCcccccccCCCCCceeCccccc
Q 024499 99 SYKCSVCNKAFSSYQALGGHKASHRKNAA-------D------ASASPNAAAASDVTPPPSATASSGSGGRTHECSICHK 165 (267)
Q Consensus 99 p~~C~~C~k~F~~~~~L~~H~~~H~~~k~-------~------c~~C~~~f~~~~~~~~L~~H~~~h~g~kp~~C~~C~k 165 (267)
|-.|++|+-+....-+|.+-.+---.-++ . |-.|+..-.... -|.|..|..
T Consensus 290 P~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~----------------~y~C~~Ck~ 353 (378)
T KOG2807|consen 290 PIECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSG----------------RYRCESCKN 353 (378)
T ss_pred CccCCccceeEecchHHHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCC----------------cEEchhccc
Q ss_pred cCCChhhHHhhhhhc
Q 024499 166 SFPTGQALGGHKRCH 180 (267)
Q Consensus 166 ~F~~~~~L~~H~r~H 180 (267)
.|.-....-.|...|
T Consensus 354 ~FCldCDv~iHesLh 368 (378)
T KOG2807|consen 354 VFCLDCDVFIHESLH 368 (378)
T ss_pred eeeccchHHHHhhhh
No 189
>PRK12496 hypothetical protein; Provisional
Probab=20.40 E-value=66 Score=26.10 Aligned_cols=11 Identities=0% Similarity=-0.112 Sum_probs=6.9
Q ss_pred CCCCCCCCCCC
Q 024499 128 DASASPNAAAA 138 (267)
Q Consensus 128 ~c~~C~~~f~~ 138 (267)
.|..|++.|..
T Consensus 129 ~C~gC~~~~~~ 139 (164)
T PRK12496 129 VCKGCKKKYPE 139 (164)
T ss_pred ECCCCCccccC
Confidence 46677766653
No 190
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=20.24 E-value=75 Score=20.36 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=8.9
Q ss_pred CceeCccccccC
Q 024499 156 RTHECSICHKSF 167 (267)
Q Consensus 156 kp~~C~~C~k~F 167 (267)
.-|.|..||..+
T Consensus 36 ~r~~C~~Cgyt~ 47 (50)
T PRK00432 36 DRWHCGKCGYTE 47 (50)
T ss_pred CcEECCCcCCEE
Confidence 467888888764
No 191
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=20.14 E-value=81 Score=20.71 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=6.8
Q ss_pred ceeCccccccCC
Q 024499 157 THECSICHKSFP 168 (267)
Q Consensus 157 p~~C~~C~k~F~ 168 (267)
.-.|+.|+..+-
T Consensus 21 iVvCp~CgapyH 32 (54)
T PF14446_consen 21 IVVCPECGAPYH 32 (54)
T ss_pred EEECCCCCCccc
Confidence 456666665543
Done!