Query 024500
Match_columns 266
No_of_seqs 187 out of 1146
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 09:19:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jg6_A DNA-3-methyladenine gly 100.0 3E-53 1E-57 369.5 11.2 105 159-265 1-105 (186)
2 2ofk_A 3-methyladenine DNA gly 100.0 3.9E-53 1.3E-57 368.0 11.6 105 159-265 1-105 (183)
3 2h56_A DNA-3-methyladenine gly 95.7 0.031 1.1E-06 48.8 7.8 90 169-264 29-120 (233)
4 1orn_A Endonuclease III; DNA r 95.4 0.12 4.1E-06 44.9 10.4 70 191-264 33-102 (226)
5 2yg9_A DNA-3-methyladenine gly 95.4 0.043 1.5E-06 47.8 7.6 90 169-264 38-128 (225)
6 3n0u_A Probable N-glycosylase/ 95.1 0.029 9.8E-07 49.2 5.5 67 187-262 46-113 (219)
7 1kea_A Possible G-T mismatches 94.4 0.17 5.8E-06 43.6 8.7 70 191-264 35-104 (221)
8 2abk_A Endonuclease III; DNA-r 94.3 0.1 3.5E-06 44.5 7.0 70 191-264 29-98 (211)
9 1kg2_A A/G-specific adenine gl 93.7 0.25 8.4E-06 42.6 8.4 69 191-264 30-98 (225)
10 4b21_A Probable DNA-3-methylad 93.3 0.34 1.2E-05 42.5 8.7 90 169-264 36-131 (232)
11 3s6i_A DNA-3-methyladenine gly 93.1 0.33 1.1E-05 42.3 8.2 88 169-263 25-119 (228)
12 3n5n_X A/G-specific adenine DN 92.3 0.57 2E-05 42.7 9.0 72 188-264 46-117 (287)
13 3i0w_A 8-oxoguanine-DNA-glycos 91.9 0.97 3.3E-05 40.6 9.8 87 169-263 94-192 (290)
14 1pu6_A 3-methyladenine DNA gly 91.7 0.71 2.4E-05 39.8 8.5 72 191-264 30-106 (218)
15 4e9f_A Methyl-CPG-binding doma 91.0 0.94 3.2E-05 37.9 8.3 68 192-263 32-99 (161)
16 3fhg_A Mjogg, N-glycosylase/DN 90.2 0.89 3.1E-05 38.8 7.6 69 187-263 29-97 (207)
17 3fsp_A A/G-specific adenine gl 89.5 1.3 4.6E-05 40.4 8.7 71 189-264 37-107 (369)
18 2d3d_A VTS1 protein; RNA bindi 87.8 0.93 3.2E-05 35.3 5.4 48 214-263 31-78 (88)
19 2jhn_A ALKA, 3-methyladenine D 87.4 1.2 4E-05 40.0 6.6 86 169-260 94-193 (295)
20 2b6g_A VTS1P; alpha-helix, pen 86.1 1.6 5.4E-05 35.7 6.2 55 206-263 55-109 (119)
21 1mpg_A ALKA, 3-methyladenine D 85.6 3.6 0.00012 36.4 8.8 79 180-264 102-191 (282)
22 2es6_A VTS1P; SAM domain, prot 84.2 1.6 5.6E-05 34.8 5.3 47 214-262 44-90 (101)
23 1v38_A SAM-domain protein sams 80.7 2.2 7.5E-05 31.4 4.5 43 214-258 25-70 (78)
24 1ucv_A Ephrin type-A receptor 79.6 3.1 0.00011 30.6 5.1 46 214-261 20-68 (81)
25 3k1r_B Usher syndrome type-1G 74.3 6.4 0.00022 28.8 5.4 45 214-263 19-63 (74)
26 1b0x_A Protein (EPHA4 receptor 74.2 5.1 0.00017 30.3 5.0 46 214-261 39-87 (94)
27 1b4f_A EPHB2; SAM domain, EPH 73.8 5.6 0.00019 29.0 5.0 46 214-261 24-72 (82)
28 2dl0_A SAM and SH3 domain-cont 73.7 2.2 7.4E-05 33.0 2.9 43 214-258 36-81 (97)
29 2xhi_A N-glycosylase/DNA lyase 73.1 9.1 0.00031 35.5 7.4 87 170-264 132-232 (360)
30 2eao_A Ephrin type-B receptor 72.7 5.6 0.00019 30.3 5.0 46 214-261 35-83 (99)
31 1x40_A ARAP2; ASAP-related pro 72.2 3.8 0.00013 30.9 3.9 46 214-261 28-76 (91)
32 2kso_A Ephrin type-A receptor 71.5 5.9 0.0002 29.4 4.7 46 214-261 29-77 (82)
33 2k4p_A Phosphatidylinositol-3, 70.7 5.7 0.0002 30.0 4.6 42 214-257 39-83 (86)
34 3h8m_A Ephrin type-A receptor 69.6 7.6 0.00026 29.5 5.1 45 214-260 38-85 (90)
35 3fhf_A Mjogg, N-glycosylase/DN 67.9 7.6 0.00026 33.7 5.4 66 187-260 40-105 (214)
36 2e8n_A Ephrin type-A receptor 66.5 4.7 0.00016 30.0 3.3 46 214-261 25-73 (88)
37 3kka_C Ephrin type-A receptor 65.5 8.5 0.00029 29.0 4.6 43 214-258 34-79 (86)
38 3hil_A Ephrin type-A receptor 64.4 6.1 0.00021 29.5 3.5 42 214-257 36-80 (82)
39 1oxj_A RNA-binding protein sma 62.7 6.6 0.00023 34.0 3.9 44 214-260 20-63 (173)
40 2kg5_A ARF-GAP, RHO-GAP domain 61.9 9 0.00031 29.6 4.2 43 214-258 39-84 (100)
41 2ean_A Connector enhancer of k 57.0 19 0.00064 26.1 5.0 40 221-262 37-76 (83)
42 3sei_A Caskin-1; SAM domain, p 51.8 16 0.00054 29.8 4.3 43 214-258 23-67 (149)
43 3sei_A Caskin-1; SAM domain, p 51.7 25 0.00086 28.6 5.5 48 214-263 92-142 (149)
44 3bs5_B Connector enhancer of k 50.5 30 0.001 24.7 5.2 45 216-262 26-72 (80)
45 2qkq_A Ephrin type-B receptor 47.1 16 0.00056 26.6 3.4 43 214-258 28-73 (83)
46 2lmr_A ODIN, ankyrin repeat an 46.4 13 0.00044 28.9 2.8 43 214-258 42-89 (101)
47 2lv7_A Calcium-binding protein 44.8 7.8 0.00027 28.8 1.3 45 214-258 36-80 (100)
48 2b1u_A Calmodulin-like protein 41.7 15 0.00051 23.7 2.2 45 213-257 5-49 (71)
49 2gle_A Neurabin-1; SAM domain, 40.9 54 0.0019 22.9 5.2 46 214-261 22-69 (74)
50 1k94_A Grancalcin; penta-EF-ha 38.8 20 0.00069 27.0 2.8 49 209-257 65-113 (165)
51 2f3n_A SH3 and multiple ankyri 38.7 31 0.001 24.7 3.6 44 215-260 21-66 (76)
52 1eh2_A EPS15; calcium binding, 36.8 13 0.00046 28.1 1.5 39 203-242 4-42 (106)
53 1kdx_B CREB; complex (transcri 36.6 4.9 0.00017 25.5 -0.8 17 207-223 7-23 (28)
54 2ktg_A Calmodulin, putative; e 36.1 16 0.00053 24.7 1.6 45 213-257 13-57 (85)
55 2kz2_A Calmodulin, CAM; TR2C, 35.5 13 0.00046 26.5 1.3 44 214-257 29-72 (94)
56 1juo_A Sorcin; calcium-binding 34.5 29 0.001 27.2 3.2 49 209-257 98-146 (198)
57 2jjz_A Ionized calcium-binding 33.5 32 0.0011 26.4 3.2 50 210-259 46-95 (150)
58 2kiv_A Ankyrin repeat and ster 33.3 32 0.0011 27.7 3.3 42 215-258 28-74 (148)
59 2ke7_A Ankyrin repeat and ster 32.7 25 0.00087 26.8 2.5 45 214-260 35-84 (103)
60 2aao_A CDPK, calcium-dependent 32.0 47 0.0016 24.6 3.9 61 192-256 9-69 (166)
61 1j7q_A CAVP, calcium vector pr 31.4 18 0.00063 24.5 1.4 38 214-251 14-51 (86)
62 1wlz_A DJBP, CAP-binding prote 31.3 21 0.0007 25.2 1.7 44 212-255 22-65 (105)
63 2d58_A Allograft inflammatory 30.8 29 0.001 24.8 2.4 47 212-258 30-76 (107)
64 2k9i_A Plasmid PRN1, complete 30.7 1E+02 0.0036 19.8 5.0 31 188-220 17-47 (55)
65 1tiz_A Calmodulin-related prot 29.9 13 0.00044 23.6 0.3 42 216-257 3-44 (67)
66 3bq7_A Diacylglycerol kinase d 29.8 49 0.0017 23.9 3.5 44 216-261 27-72 (81)
67 1fi6_A EH domain protein REPS1 28.9 12 0.0004 26.8 -0.0 30 212-241 7-36 (92)
68 2jq6_A EH domain-containing pr 27.9 12 0.00042 30.3 -0.0 36 204-241 42-77 (139)
69 2joj_A Centrin protein; N-term 27.8 14 0.00048 24.3 0.3 45 213-257 6-50 (77)
70 2i7a_A Calpain 13; calcium-dep 27.7 22 0.00074 28.5 1.4 48 209-257 71-122 (174)
71 2eam_A Putative 47 kDa protein 26.9 17 0.00058 26.4 0.5 43 214-258 25-72 (80)
72 4h62_V Mediator of RNA polymer 26.0 20 0.00069 22.8 0.7 15 228-242 6-20 (31)
73 2kn2_A Calmodulin; S MAPK phos 25.9 23 0.00079 24.2 1.1 42 214-255 9-50 (92)
74 2mys_C Myosin; muscle protein, 25.5 48 0.0017 23.8 2.8 44 213-256 84-127 (149)
75 2znd_A Programmed cell death p 25.4 36 0.0012 25.7 2.2 49 209-257 69-117 (172)
76 1k2h_A S100A1, S-100 protein, 25.3 26 0.00088 24.1 1.2 32 211-242 6-39 (93)
77 1avs_A Troponin C; muscle cont 25.1 27 0.00094 23.9 1.4 45 213-257 19-63 (90)
78 1gjy_A Sorcin, CP-22, V19; cal 24.9 34 0.0012 25.8 2.0 54 204-257 59-115 (167)
79 2pvb_A Protein (parvalbumin); 24.7 35 0.0012 23.9 1.9 46 213-258 40-88 (108)
80 3bs7_A Protein aveugle; sterIl 24.5 1.7E+02 0.0057 20.5 5.5 45 215-261 24-70 (78)
81 2qac_A Myosin A tail domain in 24.2 57 0.002 23.7 3.1 46 213-258 83-128 (146)
82 1y1x_A Leishmania major homolo 23.9 49 0.0017 25.8 2.8 47 210-256 89-135 (191)
83 2kgr_A Intersectin-1; structur 23.8 17 0.00057 27.3 0.0 31 211-241 11-41 (111)
84 1wdc_C Scallop myosin; calcium 23.7 47 0.0016 24.4 2.5 45 213-257 83-127 (156)
85 3iuo_A ATP-dependent DNA helic 22.3 1.3E+02 0.0045 23.3 5.0 47 194-240 23-82 (122)
86 1c07_A Protein (epidermal grow 22.2 11 0.00039 27.1 -1.2 31 212-242 8-38 (95)
87 1wy9_A Allograft inflammatory 22.2 49 0.0017 25.3 2.4 47 211-257 45-91 (147)
88 2ovk_B RLC, myosin regulatory 21.9 57 0.0019 23.9 2.7 45 214-258 16-60 (153)
89 1c7v_A CAVP, calcium vector pr 21.7 48 0.0016 22.0 2.0 44 213-257 8-52 (81)
90 3h4s_E KCBP interacting Ca2+-b 21.6 54 0.0019 24.5 2.5 45 213-257 39-84 (135)
91 1qjt_A EH1, epidermal growth f 21.2 21 0.00072 26.3 0.1 44 212-257 9-52 (99)
92 1pva_A Parvalbumin; calcium bi 21.0 46 0.0016 23.3 1.9 47 212-258 40-89 (110)
93 3rm1_A Protein S100-B; alpha-h 20.5 40 0.0014 23.9 1.5 31 211-242 6-39 (92)
94 3i5g_B Myosin regulatory light 20.4 57 0.002 25.2 2.5 44 213-256 84-127 (153)
No 1
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=100.00 E-value=3e-53 Score=369.55 Aligned_cols=105 Identities=32% Similarity=0.618 Sum_probs=103.0
Q ss_pred CCCCCCCCCCCChhhhhhhhcCCCccccChHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 024500 159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA 238 (266)
Q Consensus 159 ~~RC~Wat~~sdply~~YHDeEWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~ 238 (266)
|+||.|++ +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||.|+|++|++
T Consensus 1 m~RC~W~~--~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~ 78 (186)
T 2jg6_A 1 MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDR 78 (186)
T ss_dssp CTTTTTTC--CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence 47999996 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhcchhHHHHHHHHHHHHHhh
Q 024500 239 AGSAASSLLSELKLRAIIENARQISKV 265 (266)
Q Consensus 239 L~~d~~IIRNr~KIrAVI~NArailkI 265 (266)
||+|++|||||+||+|||+||+++++|
T Consensus 79 Ll~d~gIIRnr~KI~A~i~NA~~~l~i 105 (186)
T 2jg6_A 79 LMTFPNIVHHRKKLEAIVNQAQGYLKI 105 (186)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HhcCccchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987
No 2
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=100.00 E-value=3.9e-53 Score=367.97 Aligned_cols=105 Identities=39% Similarity=0.761 Sum_probs=102.4
Q ss_pred CCCCCCCCCCCChhhhhhhhcCCCccccChHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 024500 159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA 238 (266)
Q Consensus 159 ~~RC~Wat~~sdply~~YHDeEWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~ 238 (266)
++||.|++ +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||.|+|++|++
T Consensus 1 ~~RC~W~~--~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~ 78 (183)
T 2ofk_A 1 MQRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVER 78 (183)
T ss_dssp -CCCTTCC--SCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHH
Confidence 46999996 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhcchhHHHHHHHHHHHHHhh
Q 024500 239 AGSAASSLLSELKLRAIIENARQISKV 265 (266)
Q Consensus 239 L~~d~~IIRNr~KIrAVI~NArailkI 265 (266)
||+|++|||||+||+|||+||+++++|
T Consensus 79 Ll~d~~IIRnr~KI~A~i~NA~~~l~i 105 (183)
T 2ofk_A 79 LLQNTGIIRHRGKIQAIISNARAWLAM 105 (183)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987
No 3
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=95.67 E-value=0.031 Score=48.77 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=70.4
Q ss_pred CChhhhhhhhcCCCccccChHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCC--CHHHHhcCCHHHHHHhcccchhh
Q 024500 169 TDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGF--DPIAVSKLNEKKLLAAGSAASSL 246 (266)
Q Consensus 169 sdply~~YHDeEWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~F--Dp~kVA~~~E~~Ie~L~~d~~II 246 (266)
.|+.+....+..-|.+.....-.||.|+-.+...-.+|..+.+-...|.+.|..+ +|+.|+..++++|.. +-
T Consensus 29 ~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~Lr~------~G 102 (233)
T 2h56_A 29 QDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQ------AG 102 (233)
T ss_dssp TCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHHHH------TT
T ss_pred cCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHHHH------cC
Confidence 5776665555444444333344899999999999999999999999999999777 999999999998833 33
Q ss_pred cchhHHHHHHHHHHHHHh
Q 024500 247 LSELKLRAIIENARQISK 264 (266)
Q Consensus 247 RNr~KIrAVI~NArailk 264 (266)
-.++|.+.|+.=|+++.+
T Consensus 103 ~~~~KA~~I~~~A~~i~~ 120 (233)
T 2h56_A 103 VSKRKIEYIRHVCEHVES 120 (233)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 567889999998888754
No 4
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=95.39 E-value=0.12 Score=44.91 Aligned_cols=70 Identities=16% Similarity=0.044 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHh
Q 024500 191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (266)
Q Consensus 191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArailk 264 (266)
.||.|+-+++..-.+|..+..-...|.+.| -+++.|+..++++|++++..-+.- +.|.+.|++=|+.+.+
T Consensus 33 pfe~Lv~~IlsQqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~~--~~KA~~l~~~a~~i~~ 102 (226)
T 1orn_A 33 PFELLIAVVLSAQCTDALVNKVTKRLFEKY--RTPHDYIAVPLEELEQDIRSIGLY--RNKARNIQKLCAMLID 102 (226)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--CSHHHHHSSCHHHHHHHTGGGSSH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHC--CCHHHHHcCCHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHH
Confidence 699999999999999999998888887777 489999999999999988766644 4677888888887764
No 5
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=95.38 E-value=0.043 Score=47.76 Aligned_cols=90 Identities=22% Similarity=0.115 Sum_probs=71.4
Q ss_pred CChhhhhhhhcCCCc-cccChHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhc
Q 024500 169 TDPCYAAFHDEEWGV-PVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLL 247 (266)
Q Consensus 169 sdply~~YHDeEWG~-PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIR 247 (266)
.||.+....+..-|. +.....-.||.|+-.+...-.+|..+.+-...|.+.|...+++.|+..++++|..+ --
T Consensus 38 ~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~Lr~~------G~ 111 (225)
T 2yg9_A 38 RDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDLRGV------GL 111 (225)
T ss_dssp TSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHHHHT------TC
T ss_pred cCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHHHHC------CC
Confidence 688777666655555 33344458999999999999999999998888888887789999999999988432 34
Q ss_pred chhHHHHHHHHHHHHHh
Q 024500 248 SELKLRAIIENARQISK 264 (266)
Q Consensus 248 Nr~KIrAVI~NArailk 264 (266)
.+.|.+.|+.=|+.+.+
T Consensus 112 ~~~KA~~i~~lA~~~~~ 128 (225)
T 2yg9_A 112 SWAKVRTVQAAAAAAVS 128 (225)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 57899999998888753
No 6
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=95.06 E-value=0.029 Score=49.23 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhc-chhHHHHHHHHHHHH
Q 024500 187 DDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLL-SELKLRAIIENARQI 262 (266)
Q Consensus 187 DDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIR-Nr~KIrAVI~NArai 262 (266)
.+.-.||.|+..++.+..+|..+.+-.+.| |+.++.+++++|++++...+ +| .+.|.+.|+++|+.+
T Consensus 46 ~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L--------p~~l~~~~~eeL~~~Ir~~G-~Rf~~~KA~~I~~~a~~i 113 (219)
T 3n0u_A 46 TEEDLFCELSFCVLTANWSAEGGIRAQKEI--------GKGFVHLPLEELAEKLREVG-HRYPQKRAEFIVENRKLL 113 (219)
T ss_dssp CHHHHHHHHHHHHHTTTSCHHHHHHHHHHH--------TTHHHHCCHHHHHHHHHHTT-CSSHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH
Confidence 567799999999999999999887644444 78899999999999888777 45 789999999999864
No 7
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=94.42 E-value=0.17 Score=43.60 Aligned_cols=70 Identities=13% Similarity=0.010 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHh
Q 024500 191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (266)
Q Consensus 191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArailk 264 (266)
.||.|+-+++..-.+|..+.+-...|.+.| .+|+.|+..++++|+++...-+. .+.|.+.|+.=|+.+.+
T Consensus 35 pfe~lv~~IlsQqts~~~~~~~~~~l~~~f--ptp~~la~a~~e~l~~~i~~~G~--~~~KA~~l~~~a~~i~~ 104 (221)
T 1kea_A 35 PYVILITEILLRRTTAGHVKKIYDKFFVKY--KCFEDILKTPKSEIAKDIKEIGL--SNQRAEQLKELARVVIN 104 (221)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHHSCHHHHHHHTGGGSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Confidence 799999999999999999999888888876 68999999999999988776554 46788888888888764
No 8
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=94.29 E-value=0.1 Score=44.52 Aligned_cols=70 Identities=19% Similarity=0.099 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHh
Q 024500 191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (266)
Q Consensus 191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArailk 264 (266)
.||.|+-+++..-.+|..+..-.+.|.+.| .+++.|+..++++|++++..-+. .+.|.+.|++=|+.+.+
T Consensus 29 pfe~lv~~Il~qqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~--~~~KA~~l~~~a~~~~~ 98 (211)
T 2abk_A 29 PFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGL--YNSKAENIIKTCRILLE 98 (211)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTSTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH
Confidence 799999999999999999877665554443 46999999999999988776554 56788888888888764
No 9
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=93.75 E-value=0.25 Score=42.63 Aligned_cols=69 Identities=10% Similarity=0.115 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHh
Q 024500 191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (266)
Q Consensus 191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArailk 264 (266)
.||.|+-+++..-.+|..+..-...|.+.| .+++.|+..++++|+++...-+.- .|.+.|++=|+.+.+
T Consensus 30 pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~--pt~~~la~~~~~~l~~~i~~~G~~---~kA~~l~~~a~~i~~ 98 (225)
T 1kg2_A 30 PYKVWLSEVMLQQTQVATVIPYFERFMARF--PTVTDLANAPLDEVLHLWTGLGYY---ARARNLHKAAQQVAT 98 (225)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHC--SSHHHHHHSCHHHHHHHHTTSCCT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhCChH---HHHHHHHHHHHHHHH
Confidence 699999999999999999987666665555 479999999999999887766654 388888888888764
No 10
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=93.34 E-value=0.34 Score=42.46 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=68.5
Q ss_pred CChhhhhhhhcCCCc--cccChHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcC---C-CHHHHhcCCHHHHHHhccc
Q 024500 169 TDPCYAAFHDEEWGV--PVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG---F-DPIAVSKLNEKKLLAAGSA 242 (266)
Q Consensus 169 sdply~~YHDeEWG~--PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~---F-Dp~kVA~~~E~~Ie~L~~d 242 (266)
.||.+....+..-|. |....+-.||.|+-.+...-.+|..+.+-...|.+.|.. | +|+.|+..++++|..
T Consensus 36 ~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr~---- 111 (232)
T 4b21_A 36 IDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHE---- 111 (232)
T ss_dssp TCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHHHT----
T ss_pred hCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHHHH----
Confidence 477666555554452 212222379999999999999999999999999999975 5 999999999998743
Q ss_pred chhhcchhHHHHHHHHHHHHHh
Q 024500 243 ASSLLSELKLRAIIENARQISK 264 (266)
Q Consensus 243 ~~IIRNr~KIrAVI~NArailk 264 (266)
+--.++|.+.|+.=|+++.+
T Consensus 112 --~Gl~~~Ka~~l~~~A~~~~~ 131 (232)
T 4b21_A 112 --CGFSKLKSQEIHIVAEAALN 131 (232)
T ss_dssp --TTCCHHHHHHHHHHHHHHHT
T ss_pred --cCCcHHHHHHHHHHHHHHHh
Confidence 23457888888888887753
No 11
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=93.10 E-value=0.33 Score=42.33 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=68.2
Q ss_pred CChhhhhhhhcCCCcccc--ChH-HHHHHHHHHHHhccCcHHHHHHhHHHHHHHh---cCC-CHHHHhcCCHHHHHHhcc
Q 024500 169 TDPCYAAFHDEEWGVPVH--DDK-KLFELLVLSGALSELTWPAILSKRHIFREVF---VGF-DPIAVSKLNEKKLLAAGS 241 (266)
Q Consensus 169 sdply~~YHDeEWG~Pvh--DDr-~LFE~L~LEgfQAGLSW~tILkKRe~FReAF---~~F-Dp~kVA~~~E~~Ie~L~~ 241 (266)
.||.+....+..-|..+. ..+ -.||.|+-.+...-.||..+.+-...| +.| ..| +|+.|+..++++|..
T Consensus 25 ~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~Lr~--- 100 (228)
T 3s6i_A 25 LDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIMRA--- 100 (228)
T ss_dssp SCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHHHH---
T ss_pred hChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHHHH---
Confidence 588777666665554442 122 479999999999999999999999999 888 345 999999999998843
Q ss_pred cchhhcchhHHHHHHHHHHHHH
Q 024500 242 AASSLLSELKLRAIIENARQIS 263 (266)
Q Consensus 242 d~~IIRNr~KIrAVI~NArail 263 (266)
+--.++|.+.|++=|+++.
T Consensus 101 ---~G~~~rKa~~i~~~A~~~~ 119 (228)
T 3s6i_A 101 ---CGFSARKIDSLKSIAEATI 119 (228)
T ss_dssp ---HTCCHHHHHHHHHHHHHHH
T ss_pred ---cCCCHHHHHHHHHHHHHHH
Confidence 3356778888888888775
No 12
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=92.33 E-value=0.57 Score=42.66 Aligned_cols=72 Identities=10% Similarity=0.126 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHh
Q 024500 188 DKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (266)
Q Consensus 188 Dr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArailk 264 (266)
.+-.||.|+-+++..-.+|..+..-...|.+.|- +++.|+..++++|+++...-+.- + |.+.|++=|+.+++
T Consensus 46 ~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fp--tpe~La~a~~eel~~~ir~lG~~--~-KA~~L~~~A~~i~~ 117 (287)
T 3n5n_X 46 DRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWP--TLQDLASASLEEVNQLWAGLGYY--S-RGRRLQEGARKVVE 117 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--SHHHHHTSCHHHHHHHHTTSSCH--H-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCCH--H-HHHHHHHHHHHHHH
Confidence 4678999999999999999999988888888774 89999999999999988776664 3 78888888888765
No 13
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=91.85 E-value=0.97 Score=40.62 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=68.9
Q ss_pred CChhhhhhhhcCCCccccChHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHHHH
Q 024500 169 TDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG-----------F-DPIAVSKLNEKKL 236 (266)
Q Consensus 169 sdply~~YHDeEWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~-----------F-Dp~kVA~~~E~~I 236 (266)
.||.+..-.+...|..+.. +-.||.|+-.+...-.+|..+.+-...|.+.|.. | +|+.|+..+++++
T Consensus 94 ~Dp~l~~~~~~~~glR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L 172 (290)
T 3i0w_A 94 RDPLLKKSVDFGEGIRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDF 172 (290)
T ss_dssp TSHHHHHHHHHTTTCCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHH
T ss_pred hCHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHH
Confidence 4776666556667766654 5589999999999999999999999999998754 5 9999999999999
Q ss_pred HHhcccchhhcchhHHHHHHHHHHHHH
Q 024500 237 LAAGSAASSLLSELKLRAIIENARQIS 263 (266)
Q Consensus 237 e~L~~d~~IIRNr~KIrAVI~NArail 263 (266)
..+.- - .|.+.|+.=|+++.
T Consensus 173 ~~~g~----g---~Ra~~I~~~A~~i~ 192 (290)
T 3i0w_A 173 EECTA----G---FRAKYLKDTVDRIY 192 (290)
T ss_dssp HHTTC----G---GGHHHHHHHHHHHH
T ss_pred HHcCC----c---hHHHHHHHHHHHHH
Confidence 87422 1 17888888888775
No 14
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=91.73 E-value=0.71 Score=39.76 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHhHHHHHHH-hcCCC----HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHh
Q 024500 191 LFELLVLSGALSELTWPAILSKRHIFREV-FVGFD----PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (266)
Q Consensus 191 LFE~L~LEgfQAGLSW~tILkKRe~FReA-F~~FD----p~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArailk 264 (266)
-||.|+-.++..-.+|..+.+-...|.+. |-..+ ++.|+..++++|++++..-+ -.+.|.+.|+.=|+++.+
T Consensus 30 pfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G--~~~~KA~~L~~~a~~i~~ 106 (218)
T 1pu6_A 30 KFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSG--FYNQKAKRLIDLSGNILK 106 (218)
T ss_dssp SHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCC--CcHHHHHHHHHHHHHHHH
Confidence 59999999999999999998877777766 54322 99999999999998876655 346678888888877653
No 15
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=91.05 E-value=0.94 Score=37.86 Aligned_cols=68 Identities=10% Similarity=0.074 Sum_probs=54.5
Q ss_pred HHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024500 192 FELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS 263 (266)
Q Consensus 192 FE~L~LEgfQAGLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArail 263 (266)
|+.|+-+++.+--+|.++..--+.|.+.|- +++.++..++++|+++...-|.-+ .|-+.|++-|+.++
T Consensus 32 ~~vLVs~ILsqQT~~~~v~~~~~~l~~~~p--t~~~la~a~~~el~~~i~~lG~y~--~KAk~i~~~a~~~v 99 (161)
T 4e9f_A 32 WKLLIATIFLNRTSGKMAIPVLWKFLEKYP--SAEVARTADWRDVSELLKPLGLYD--LRAKTIVKFSDEYL 99 (161)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHSC--SHHHHTTSCHHHHHHHHGGGSCHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHCC--CHHHHhccChHhHHhHhhhcCCHH--HHHHHHHHHhCCcC
Confidence 899999999999999999876665555543 899999999999999988777654 45566777776553
No 16
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=90.17 E-value=0.89 Score=38.77 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024500 187 DDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS 263 (266)
Q Consensus 187 DDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArail 263 (266)
..+-.||.|+-+++-.-.+|..+.+-.+.| ++.++..++++|++++...++--.+.|.+.|++-|+++.
T Consensus 29 ~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L--------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~ 97 (207)
T 3fhg_A 29 NEEVWFRELTLCLLTANSSFISAYQALNCL--------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVY 97 (207)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 567799999999999999999998877776 578999999999987765554356789999998888553
No 17
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=89.54 E-value=1.3 Score=40.41 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHh
Q 024500 189 KKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (266)
Q Consensus 189 r~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArailk 264 (266)
+--||.|+-+++..-.+|.++..-...|.+.| .+++.|+..++++|+.+...-+.- + |.+.|+.=|+.+.+
T Consensus 37 ~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~a~~~~l~~~i~~~G~~--~-ra~~l~~~a~~~~~ 107 (369)
T 3fsp_A 37 RDPYKVWVSEVMLQQTRVETVIPYFEQFIDRF--PTLEALADADEDEVLKAWEGLGYY--S-RVRNLHAAVKEVKT 107 (369)
T ss_dssp CCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHTSCHHHHHHTTTTSSCT--H-HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhccCcHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhcChH--H-HHHHHHHHHHHHHH
Confidence 34699999999999999999998877777776 589999999999999887766653 4 78888888888764
No 18
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=87.77 E-value=0.93 Score=35.26 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=40.6
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024500 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS 263 (266)
Q Consensus 214 e~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArail 263 (266)
+-|.+.|.+.+.+.+..++|++++.+... ..-+|+||...|+.-+...
T Consensus 31 hKY~~~F~~~~~~~l~~LtdedL~~~GVt--a~GaRrKil~aI~~lr~~~ 78 (88)
T 2d3d_A 31 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDYK 78 (88)
T ss_dssp GGGHHHHTTSCHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhcCCHHHHHHcCHHHHHHcCCc--cHhHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999998765 2578999999988766554
No 19
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=87.38 E-value=1.2 Score=39.98 Aligned_cols=86 Identities=17% Similarity=0.128 Sum_probs=65.9
Q ss_pred CChhhhhhhhcCCCccccC--hHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHH
Q 024500 169 TDPCYAAFHDEEWGVPVHD--DKKLFELLVLSGALSELTWPAILSKRHIFREVFVG-----------F-DPIAVSKLNEK 234 (266)
Q Consensus 169 sdply~~YHDeEWG~PvhD--Dr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~-----------F-Dp~kVA~~~E~ 234 (266)
.|+.+....+..-|..+.- ..-.||.|+-.+...-.+|..+.+-...|.+.|.. | +++.|+..+++
T Consensus 94 ~D~~l~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~ 173 (295)
T 2jhn_A 94 GDEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVE 173 (295)
T ss_dssp TSHHHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHH
Confidence 4666666666556655543 45589999999999999999999999999999864 4 79999999988
Q ss_pred HHHHhcccchhhcchhHHHHHHHHHH
Q 024500 235 KLLAAGSAASSLLSELKLRAIIENAR 260 (266)
Q Consensus 235 ~Ie~L~~d~~IIRNr~KIrAVI~NAr 260 (266)
+|..+ --.++|.+.|+.=|+
T Consensus 174 ~Lr~~------G~~~rKa~~i~~~A~ 193 (295)
T 2jhn_A 174 GLREC------GLSRRKAELIVEIAK 193 (295)
T ss_dssp HHHHT------TCCHHHHHHHHHHHT
T ss_pred HHHHc------CCCHHHHHHHHHHHH
Confidence 87433 245677888777665
No 20
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=86.12 E-value=1.6 Score=35.66 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=43.3
Q ss_pred HHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024500 206 WPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS 263 (266)
Q Consensus 206 W~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArail 263 (266)
|..-|+ -+-|.+.|.+.|.+.+..++|++++.+... .+-+|+||...|+--+...
T Consensus 55 WL~sLr-L~KY~~~F~~~~~d~l~~LTeeDL~~lGVt--a~GaRrKlL~AI~~Lr~~k 109 (119)
T 2b6g_A 55 WLKSLR-LHKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDYK 109 (119)
T ss_dssp HHHHHT-CHHHHHHHTTSCHHHHTTCCHHHHHHHSCC--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC-ChhHHHHHccCCHHHHHhcCHHHHHHCCCC--ccccHHHHHHHHHHHHhhh
Confidence 544332 377999999999999999999999998754 3689999988887666543
No 21
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=85.65 E-value=3.6 Score=36.38 Aligned_cols=79 Identities=14% Similarity=0.052 Sum_probs=62.1
Q ss_pred CCCccccChHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcC----------C-CHHHHhcCCHHHHHHhcccchhhcc
Q 024500 180 EWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG----------F-DPIAVSKLNEKKLLAAGSAASSLLS 248 (266)
Q Consensus 180 EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~----------F-Dp~kVA~~~E~~Ie~L~~d~~IIRN 248 (266)
.-|..+....-.||.|+-.+...-.+|..+.+-...|.+.|.. | +|+.|+..++++|..+ --.
T Consensus 102 ~~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~Lr~~------G~~ 175 (282)
T 1mpg_A 102 RPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKAL------GMP 175 (282)
T ss_dssp CTTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHHHHT------TSC
T ss_pred cCCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHHHHc------CCC
Confidence 3454444445589999999999999999999999999988743 4 7999999999998433 344
Q ss_pred hhHHHHHHHHHHHHHh
Q 024500 249 ELKLRAIIENARQISK 264 (266)
Q Consensus 249 r~KIrAVI~NArailk 264 (266)
+.|.+.|+.=|+++.+
T Consensus 176 ~~ra~~i~~~A~~~~~ 191 (282)
T 1mpg_A 176 LKRAEALIHLANAALE 191 (282)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 7788888888888753
No 22
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=84.18 E-value=1.6 Score=34.79 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=39.2
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHH
Q 024500 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (266)
Q Consensus 214 e~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArai 262 (266)
.-|.+.|.+.+.+.+..+||++++.+... .+-+|+||...|+.-+..
T Consensus 44 hKY~~~F~~~~~~~l~~LTdedL~~~GVt--a~GARrKiL~aI~~Lr~~ 90 (101)
T 2es6_A 44 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDY 90 (101)
T ss_dssp CCTHHHHTTSCHHHHTTCCHHHHHHHTCC--SHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHccCCHHHHHhcCHHHHHHcCCc--cHhHHHHHHHHHHHHHHH
Confidence 45788899999999999999999998765 257899999998876654
No 23
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=80.70 E-value=2.2 Score=31.41 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=34.3
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024500 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (266)
Q Consensus 214 e~FReAF--~~FD-p~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~N 258 (266)
+-|.+.| .+|| .+.|+.++++++.+|.... .-||.||...|..
T Consensus 25 ~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~--~ghrkkil~ai~~ 70 (78)
T 1v38_A 25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIAD--PEDRARLLSAAES 70 (78)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 5677777 7894 8999999999999987642 4689999877654
No 24
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=79.63 E-value=3.1 Score=30.56 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=35.8
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHH
Q 024500 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (266)
Q Consensus 214 e~FReAF--~~FD-p~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAra 261 (266)
+.|.+.| .+|| .+.|..++++|+.+|.... +-+|.||...|..-+.
T Consensus 20 ~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~--~GhrkkIl~ai~~l~~ 68 (81)
T 1ucv_A 20 GRYRDHFAAGGYSSLGMVLRMNAQDVRALGITL--MGHQKKILGSIQTMRA 68 (81)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCC--hhHHHHHHHHHHHHHH
Confidence 4567777 4688 8999999999999876642 4689999888876554
No 25
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=74.32 E-value=6.4 Score=28.77 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=35.2
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024500 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS 263 (266)
Q Consensus 214 e~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArail 263 (266)
+.|.+ .++|.+.+..++++|+.++... +=+|.||-..|..=+..+
T Consensus 19 ~~F~~--~~id~e~l~~lt~~DL~~lGI~---~G~RkkIl~ai~~~~~~~ 63 (74)
T 3k1r_B 19 ALLRQ--EKIDLEALMLCSDLDLRSISVP---LGPREKILGAVRRRRQAM 63 (74)
T ss_dssp HHHHH--TTCCHHHHTTCCHHHHHHTTCC---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--cCcCHHHHhHCCHHHHHHcCCC---cchHHHHHHHHHHHHHHh
Confidence 55655 4689999999999999999876 458999988886655443
No 26
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=74.20 E-value=5.1 Score=30.27 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=35.0
Q ss_pred HHHHHHhc--CC-CHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHH
Q 024500 214 HIFREVFV--GF-DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (266)
Q Consensus 214 e~FReAF~--~F-Dp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAra 261 (266)
+-|.+.|. +| |.+.|..++++++.++.... +-||.||-..|..-+.
T Consensus 39 ~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~--~GhrkkIl~ai~~L~~ 87 (94)
T 1b0x_A 39 DRYKDNFTAAGYTTLEAVVHMSQDDLARIGITA--ITHQNKILSSVQAMRT 87 (94)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHH
Confidence 55666774 46 78999999999999887642 4689999877776553
No 27
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=73.76 E-value=5.6 Score=29.04 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=34.0
Q ss_pred HHHHHHhc--CC-CHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHH
Q 024500 214 HIFREVFV--GF-DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (266)
Q Consensus 214 e~FReAF~--~F-Dp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAra 261 (266)
+.|.+.|. +| |.+.+..++++++.++.... +-+|.||...|..-+.
T Consensus 24 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~--~GhrkkIl~ai~~l~~ 72 (82)
T 1b4f_A 24 GQYKESFANAGFTSFDVVSQMMMEDILRVGVTL--AGHQKKILNSIQVMRA 72 (82)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCC--HHHHHHHHHHHHHHHH
Confidence 34666664 57 78999999999999876542 4589999877776553
No 28
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.68 E-value=2.2 Score=32.98 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=33.8
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024500 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (266)
Q Consensus 214 e~FReAF--~~FD-p~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~N 258 (266)
+.|.+.| .+|| .+.|..++++|+.+|.... .-||+||..-|..
T Consensus 36 ~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~--~gHrkkIl~ai~~ 81 (97)
T 2dl0_A 36 PMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITE--ERHIRKLLSAARL 81 (97)
T ss_dssp GGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCC--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 5677777 4688 7889999999999987652 5799999876654
No 29
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=73.11 E-value=9.1 Score=35.53 Aligned_cols=87 Identities=16% Similarity=0.054 Sum_probs=62.1
Q ss_pred ChhhhhhhhcCCCccccChHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcC-------------CCHHHHhcCCHH-H
Q 024500 170 DPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG-------------FDPIAVSKLNEK-K 235 (266)
Q Consensus 170 dply~~YHDeEWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~-------------FDp~kVA~~~E~-~ 235 (266)
||.+....+..-|..+.. .-.||.|+-.+...-.+|..|.+-...|.+.|.. -+|+.|+..+.+ .
T Consensus 132 Dp~l~~l~~~~~glR~~~-~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~ee~ 210 (360)
T 2xhi_A 132 DSHFQEVAQKFQGVRLLR-QDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAH 210 (360)
T ss_dssp CHHHHHHHHHSTTCCCCC-CCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHHH
T ss_pred CHHHHHHHHHcCCCCCCC-CCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHHHH
Confidence 444444444455655544 4589999999999999999999988999888743 379999999754 3
Q ss_pred HHHhcccchhhcchhHHHHHHHHHHHHHh
Q 024500 236 LLAAGSAASSLLSELKLRAIIENARQISK 264 (266)
Q Consensus 236 Ie~L~~d~~IIRNr~KIrAVI~NArailk 264 (266)
|.. -++ . .|.+.|+.=|+++.+
T Consensus 211 Lr~----~Gl-~--~RA~~I~~~A~~i~~ 232 (360)
T 2xhi_A 211 LRK----LGL-G--YRARYVSASARAILE 232 (360)
T ss_dssp HHH----TTC-T--THHHHHHHHHHHHHH
T ss_pred HHH----cCC-c--HHHHHHHHHHHHHHh
Confidence 433 233 2 478888888888753
No 30
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.71 E-value=5.6 Score=30.31 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=34.5
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHH
Q 024500 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (266)
Q Consensus 214 e~FReAF--~~FD-p~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAra 261 (266)
+.|.+.| .+|| .+.+..|+++++.+|.... +-+|.||...|..-+.
T Consensus 35 ~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~--~GhRkkIl~ai~~l~~ 83 (99)
T 2eao_A 35 VQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITL--AGHQKKILNSIHSMRV 83 (99)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHH
Confidence 3455666 3688 8999999999999986542 4689999887776543
No 31
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=72.17 E-value=3.8 Score=30.90 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=34.3
Q ss_pred HHHHHHhc--CCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHH
Q 024500 214 HIFREVFV--GFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (266)
Q Consensus 214 e~FReAF~--~FD-p~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAra 261 (266)
+-|.+.|. +|| .+.|..++++|+.+|.... +-||.||...|..-+.
T Consensus 28 ~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~--~GHrkkIl~ai~~L~~ 76 (91)
T 1x40_A 28 EQYLLHFHESGFTTVKDCAAINDSLLQKIGISP--TGHRRRILKQLQIILS 76 (91)
T ss_dssp GGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCC--HhHHHHHHHHHHHHHh
Confidence 44666664 574 7899999999999886542 5799999888776553
No 32
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=71.48 E-value=5.9 Score=29.37 Aligned_cols=46 Identities=11% Similarity=0.212 Sum_probs=35.4
Q ss_pred HHHHHHhc--CCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHH
Q 024500 214 HIFREVFV--GFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (266)
Q Consensus 214 e~FReAF~--~FD-p~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAra 261 (266)
+-|.+.|. +|| .+.+..++++|+.+|.... +-+|.||...|..-+.
T Consensus 29 ~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~--~GhRkkIl~ai~~Lr~ 77 (82)
T 2kso_A 29 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRL--PGHQKRIAYSLLGLKD 77 (82)
T ss_dssp TTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCC--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHH
Confidence 45677774 588 8999999999999886642 4689999887776553
No 33
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=70.68 E-value=5.7 Score=30.05 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=32.6
Q ss_pred HHHHHHhc--CCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 214 HIFREVFV--GFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 214 e~FReAF~--~FD-p~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
+-|.+.|. +|| .+.|..++++|+.++... .+-+|.||...|.
T Consensus 39 ~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt--~~GHRkkIL~aI~ 83 (86)
T 2k4p_A 39 ERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQ--DPAHKRLLLDTLQ 83 (86)
T ss_dssp GGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCC--CHHHHHHHHHHHH
Confidence 56778885 564 799999999999998664 2568999976665
No 34
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=69.56 E-value=7.6 Score=29.46 Aligned_cols=45 Identities=16% Similarity=0.388 Sum_probs=33.8
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHH
Q 024500 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (266)
Q Consensus 214 e~FReAF--~~FD-p~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAr 260 (266)
+-|.+.| .+|| .+.|..++++|+.+|.... +-+|.||-..|..-+
T Consensus 38 ~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~--~GHRkkIL~ai~~Lr 85 (90)
T 3h8m_A 38 ERYKDNFTAAGYNSLESVARMTIEDVMSLGITL--VGHQKKIMSSIQTMR 85 (90)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCC--HHHHHHHHHHHHHHH
Confidence 4456666 5688 8999999999999885542 458889988776544
No 35
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=67.94 E-value=7.6 Score=33.74 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHH
Q 024500 187 DDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (266)
Q Consensus 187 DDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAr 260 (266)
+.+-.||.|+..+.-+--+|..+.+--+.+ | +.++..++++|++++..-+.=-.+.|-+-|++-|+
T Consensus 40 ~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L---~-----~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~ 105 (214)
T 3fhf_A 40 SNEEWFKELCFCILTANFTAEGGIRIQKEI---G-----DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARR 105 (214)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHH---T-----THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGG
T ss_pred CCCChHHHHHHHHHcCCCCHHHHHHHHHHH---H-----HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 567899999999999999999998766665 3 56899999999998776552133456666666665
No 36
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.54 E-value=4.7 Score=30.01 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=35.0
Q ss_pred HHHHHHhc--CCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHH
Q 024500 214 HIFREVFV--GFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (266)
Q Consensus 214 e~FReAF~--~FD-p~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAra 261 (266)
+.|.+.|. +|| .+.+..|+++++.+|.... +-||.||...|..-+.
T Consensus 25 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~--~GhRkkIl~ai~~l~~ 73 (88)
T 2e8n_A 25 QQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRL--PGHQKRIAYSLLGLKD 73 (88)
T ss_dssp GGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHH
Confidence 45666663 588 8999999999999986642 4689999888776553
No 37
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=65.53 E-value=8.5 Score=28.98 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=32.6
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024500 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (266)
Q Consensus 214 e~FReAF--~~FD-p~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~N 258 (266)
+-|.+.| .+|| .+.|..++++|+.+|.... +-+|.||-..|..
T Consensus 34 ~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~--~GHRkkIL~ai~~ 79 (86)
T 3kka_C 34 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRL--PGHQKRIAYSLLG 79 (86)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 4566666 4688 8999999999999886542 4688898877754
No 38
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=64.35 E-value=6.1 Score=29.54 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=31.2
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 214 e~FReAF--~~FD-p~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
+-|.+.| .+|| .+.|..++++|+.+|.... +-+|.||-..|.
T Consensus 36 ~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~--~GHRkkIL~aiq 80 (82)
T 3hil_A 36 KRYILHFHSAGLDTMECVLELTAEDLTQMGITL--PGHQKRILCSIQ 80 (82)
T ss_dssp GGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCC--HHHHHHHHHHHH
Confidence 3455556 4688 8899999999999886542 468889876654
No 39
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=62.67 E-value=6.6 Score=33.97 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=37.7
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHH
Q 024500 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (266)
Q Consensus 214 e~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAr 260 (266)
+-|.+.|.+.+++.+..+||++++.+.-.. -+|+||...|+.-+
T Consensus 20 hKY~~~F~~~~~e~~~~LTdedL~~~GVT~---GARrKIL~aIq~Lr 63 (173)
T 1oxj_A 20 HKYIELFKNMTYEEMLLITEDFLQSVGVTK---GASHKLALCIDKLK 63 (173)
T ss_dssp GGGGGGGTTCCHHHHTTCCHHHHHHTTCCH---HHHHHHHHHHHHHH
T ss_pred chhHHHHccCCHHHHHhcCHHHHHHCCCch---HHHHHHHHHHHHHH
Confidence 568899999999999999999999998773 78999888776544
No 40
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=61.93 E-value=9 Score=29.60 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=32.6
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024500 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (266)
Q Consensus 214 e~FReAF--~~FD-p~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~N 258 (266)
+-|.+.| .+|| .+.+..++++|+.+|.... +-+|.||...|..
T Consensus 39 ~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~--~GhRkkIL~aI~~ 84 (100)
T 2kg5_A 39 EQYADTFRRHGLATAGAARGLGHEELKQLGISA--TGHRKRILRLLQT 84 (100)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCC--hhHHHHHHHHHHH
Confidence 4556666 4788 8999999999999986652 5688998776653
No 41
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.97 E-value=19 Score=26.09 Aligned_cols=40 Identities=5% Similarity=0.042 Sum_probs=31.7
Q ss_pred cCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHH
Q 024500 221 VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (266)
Q Consensus 221 ~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArai 262 (266)
.++|-+.+..++++++.+|... -+-+|.||...|..-+..
T Consensus 37 ~~I~G~~Ll~Lt~~dL~~LGI~--~~ghr~~il~~I~~L~~~ 76 (83)
T 2ean_A 37 EKISGDQLLRITHQELEDLGVS--RIGHQELILEAVDLLCAL 76 (83)
T ss_dssp HTCCHHHHTTCCHHHHHHHTCC--CSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHhhCCHHHHHHhCCC--CHHHHHHHHHHHHHHHHH
Confidence 5678899999999999987654 256899998888776543
No 42
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=51.84 E-value=16 Score=29.79 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=32.8
Q ss_pred HHHHHHhc--CCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024500 214 HIFREVFV--GFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (266)
Q Consensus 214 e~FReAF~--~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~N 258 (266)
+-|.+.|. +||.+.+..++++|+.+|.... .-+|.||...|..
T Consensus 23 ~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~--~gHrkkil~ai~~ 67 (149)
T 3sei_A 23 QLYAPNFISAGYDLPTISRMTPEDLTAIGVTK--PGHRKKIAAEISG 67 (149)
T ss_dssp GGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCS--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHccCCHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 44666665 8999999999999999886542 3588898776653
No 43
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=51.75 E-value=25 Score=28.58 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=36.2
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024500 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS 263 (266)
Q Consensus 214 e~FReAF--~~FD-p~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArail 263 (266)
+-|.+.| .+|| .+.|..++++++.+|.... +-+|.||-..|..-+.+.
T Consensus 92 ~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~--~gHr~kIl~ai~~l~~~~ 142 (149)
T 3sei_A 92 AQYYKVLVDNGYENIDFITDITWEDLQEIGITK--LGHQKKLMLAVRKLAELR 142 (149)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHCCCchHHHHhhCCHHHHHHCCCCC--HHHHHHHHHHHHHHHHHH
Confidence 3455566 4788 8999999999998886642 468889988887766553
No 44
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=50.52 E-value=30 Score=24.70 Aligned_cols=45 Identities=7% Similarity=0.098 Sum_probs=33.4
Q ss_pred HHHHh--cCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHH
Q 024500 216 FREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (266)
Q Consensus 216 FReAF--~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NArai 262 (266)
|.+.| .++|-..+..++++++.+|.... +-+|.||...|..-+..
T Consensus 26 Y~~~F~~~~i~G~~Ll~L~~~dL~~lGI~~--~ghr~~il~~I~~L~~~ 72 (80)
T 3bs5_B 26 YIKNFEREKISGDQLLRITHQELEDLGVSR--IGHQELILEAVDLLCAL 72 (80)
T ss_dssp GHHHHHHHTCCHHHHHTCCHHHHHHTTCCC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHCCHHHHHHcCCCC--HHHHHHHHHHHHHHHHh
Confidence 34444 56888999999999999876542 56888998887765543
No 45
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=47.10 E-value=16 Score=26.59 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=32.7
Q ss_pred HHHHHHhc--CC-CHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024500 214 HIFREVFV--GF-DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (266)
Q Consensus 214 e~FReAF~--~F-Dp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~N 258 (266)
+.|.+.|. +| |.+.+..++++++.++.... +-+|.||...|..
T Consensus 28 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~--~GhrkkIl~ai~~ 73 (83)
T 2qkq_A 28 GRYEESFAAAGFGSFELVSQISAEDLLRIGVTL--AGHQKKILASVQH 73 (83)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 45777785 43 78999999999999976542 4689999776654
No 46
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=46.36 E-value=13 Score=28.92 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=32.1
Q ss_pred HHHHHHhc--CCC-HHHHh--cCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024500 214 HIFREVFV--GFD-PIAVS--KLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (266)
Q Consensus 214 e~FReAF~--~FD-p~kVA--~~~E~~Ie~L~~d~~IIRNr~KIrAVI~N 258 (266)
+-|.+.|. +|| .+.|+ .++++++.+|... .+-+|.||...|..
T Consensus 42 ~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt--~~GHRkkIL~aI~~ 89 (101)
T 2lmr_A 42 QQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGIS--DPQHRRKLLQAARS 89 (101)
T ss_dssp GGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCC--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCC--CHHHHHHHHHHHHH
Confidence 56777774 465 56787 8999999998765 24689999776654
No 47
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=44.76 E-value=7.8 Score=28.75 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024500 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (266)
Q Consensus 214 e~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~N 258 (266)
+.++++|.-||.+.=-.++-+++..++..-++-.+..-|+.++.-
T Consensus 36 ~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 36 EEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp HHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 347889999999988888999998877766666667777777653
No 48
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=41.70 E-value=15 Score=23.71 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 213 Re~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
.+.++++|..||.+.=-.++.+++..++..-++-.+...|+.++.
T Consensus 5 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 49 (71)
T 2b1u_A 5 LEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIR 49 (71)
T ss_dssp HHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 456889999999887777788888877766554445555555443
No 49
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=40.88 E-value=54 Score=22.91 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=33.1
Q ss_pred HHHHHHhc--CCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHH
Q 024500 214 HIFREVFV--GFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (266)
Q Consensus 214 e~FReAF~--~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAra 261 (266)
+.|.+.|. ++|-..+..++++++..|.... +-+|.||...|..-+.
T Consensus 22 ~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~~--~g~r~kil~~i~~L~~ 69 (74)
T 2gle_A 22 DQYVSEFSAQNISGEQLLQLDGNKLKALGMTS--SQDRALVKKKLKEMKM 69 (74)
T ss_dssp HHHHHHHTTTTCCHHHHHTCCHHHHHTTTCCC--HHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHcCCCHHHHhhCCHHHHHHcCCCC--HHHHHHHHHHHHHHHH
Confidence 45667774 5677899999999998765532 4688888877765443
No 50
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=38.82 E-value=20 Score=26.98 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=34.1
Q ss_pred HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 209 ILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
++.+.+.++++|..||.+.=-.++.+++..++..-+.-.+...+..++.
T Consensus 65 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 113 (165)
T 1k94_A 65 LWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVK 113 (165)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4445578899999999887777888888777665444445555655554
No 51
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=38.72 E-value=31 Score=24.71 Aligned_cols=44 Identities=9% Similarity=0.188 Sum_probs=31.4
Q ss_pred HHHHHh--cCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHH
Q 024500 215 IFREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (266)
Q Consensus 215 ~FReAF--~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAr 260 (266)
.|.+.| .++|-..+..++++++.+|.... +-+|.||...|..-+
T Consensus 21 ~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~--~Ghr~kIl~aI~~l~ 66 (76)
T 2f3n_A 21 EHRDRFEDHEIEGAHLPALTKEDFVELGVTR--VGHRENIERALRQLD 66 (76)
T ss_dssp GGHHHHHHTTCCGGGGGGCCHHHHHHTTCCC--HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHcCCCHHHHccCCHHHHHHcCCCC--hhHHHHHHHHHHHHH
Confidence 356666 46777899999999998876542 457888877766533
No 52
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=36.79 E-value=13 Score=28.08 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=24.1
Q ss_pred cCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccc
Q 024500 203 ELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSA 242 (266)
Q Consensus 203 GLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d 242 (266)
|..|..--..+..|+++|.-||. .=-.++-+++..++..
T Consensus 4 ~~~w~ls~~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~~ 42 (106)
T 1eh2_A 4 GSPWAVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLN 42 (106)
T ss_dssp --CCSSCHHHHHHHHHHHTTSCC-SSSCCBHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCCeEcHHHHHHHHHH
Confidence 45565444567889999999997 4344555555554443
No 53
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=36.60 E-value=4.9 Score=25.51 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=14.8
Q ss_pred HHHHHhHHHHHHHhcCC
Q 024500 207 PAILSKRHIFREVFVGF 223 (266)
Q Consensus 207 ~tILkKRe~FReAF~~F 223 (266)
..||.+|+.|+..|.+|
T Consensus 7 r~iL~rrpSYrkIlndl 23 (28)
T 1kdx_B 7 REILSRRPSYRKILNDL 23 (28)
T ss_dssp HHHHTTSTHHHHHHHHH
T ss_pred hhhhhcCchHHHHHHhh
Confidence 46899999999999876
No 54
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=36.06 E-value=16 Score=24.66 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 213 Re~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
...++++|..||.+.=-.++-+++..++..-++-.+...|..++.
T Consensus 13 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 13 QQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp HHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 466889999999876666777777776655554455555665554
No 55
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=35.48 E-value=13 Score=26.46 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 214 e~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
+.++++|..||.+.=-.++.+++..++..-+.-.....|+.++.
T Consensus 29 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~ 72 (94)
T 2kz2_A 29 EEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIR 72 (94)
T ss_dssp HHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45677777777666555666666665554444344555555544
No 56
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=34.50 E-value=29 Score=27.16 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=32.0
Q ss_pred HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 209 ILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
++.+.+.++++|..||.+.=-.++.+++..++..-+.-.....|..++.
T Consensus 98 ~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~ 146 (198)
T 1juo_A 98 LWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 146 (198)
T ss_dssp HHHHHHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4445578999999999887666777777766654443344445554443
No 57
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=33.45 E-value=32 Score=26.42 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=36.6
Q ss_pred HHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHH
Q 024500 210 LSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENA 259 (266)
Q Consensus 210 LkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NA 259 (266)
-...+.++++|..||.+.=-.++-+++..++..-+.-.+...|..++..+
T Consensus 46 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~~ 95 (150)
T 2jjz_A 46 PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEV 95 (150)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35567899999999988777788888887776555445566666666543
No 58
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=33.30 E-value=32 Score=27.69 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=31.1
Q ss_pred HHHHHh--cCCCH-HHHh--cCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024500 215 IFREVF--VGFDP-IAVS--KLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (266)
Q Consensus 215 ~FReAF--~~FDp-~kVA--~~~E~~Ie~L~~d~~IIRNr~KIrAVI~N 258 (266)
-|.+.| .+||- +.|+ .++++|+.++.... .-+|.||...|.+
T Consensus 28 ~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~--~ghRkkil~ai~~ 74 (148)
T 2kiv_A 28 QYENHLMANGFDNVQAMGSNVMEDQDLLEIGILN--SGHRQRILQAIQL 74 (148)
T ss_dssp TSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSS--TTSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 566666 56766 5666 99999999887653 3589999877765
No 59
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=32.68 E-value=25 Score=26.81 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=31.5
Q ss_pred HHHHHHh--cCCCH-HHH--hcCCHHHHHHhcccchhhcchhHHHHHHHHHH
Q 024500 214 HIFREVF--VGFDP-IAV--SKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (266)
Q Consensus 214 e~FReAF--~~FDp-~kV--A~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAr 260 (266)
+-|.+.| .+||- +.| ..|+++++.++.... +-||.||...|..-+
T Consensus 35 ~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~~--~GhRkkIl~ai~~L~ 84 (103)
T 2ke7_A 35 PQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILN--SGHRQRILQAIQLLP 84 (103)
T ss_dssp TTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCCC--HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCCC--HHHHHHHHHHHHHHH
Confidence 4556666 45664 445 699999999986642 468999987776544
No 60
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=32.01 E-value=47 Score=24.56 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=40.4
Q ss_pred HHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHH
Q 024500 192 FELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (266)
Q Consensus 192 FE~L~LEgfQAGLSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI 256 (266)
|..+++..+...|+...+ ..++++|..||.+.=-.++-+++..++..-+.-.+...|..++
T Consensus 9 ~~~~~~~~~~~~l~~~~~----~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~ 69 (166)
T 2aao_A 9 FKKMALRVIAESLSEEEI----AGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLM 69 (166)
T ss_dssp HHHHHHHHHHHHSCHHHH----HHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHH----HHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 455667777777887654 4578888888887766778888877666544434444555544
No 61
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=31.40 E-value=18 Score=24.51 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=23.4
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhH
Q 024500 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELK 251 (266)
Q Consensus 214 e~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~K 251 (266)
..++++|..||.+.=-.++-+++..++..-+.-.+...
T Consensus 14 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~ 51 (86)
T 1j7q_A 14 DECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRE 51 (86)
T ss_dssp HHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHH
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHH
Confidence 45777788787776666677777666554443333333
No 62
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=31.35 E-value=21 Score=25.23 Aligned_cols=44 Identities=14% Similarity=0.330 Sum_probs=25.6
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHH
Q 024500 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAI 255 (266)
Q Consensus 212 KRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAV 255 (266)
....++++|..||.+.=-.++-+++..++..-+.-.+...|+.+
T Consensus 22 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~~l 65 (105)
T 1wlz_A 22 HYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRL 65 (105)
T ss_dssp THHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45678888888887765556666665555443333333334333
No 63
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=30.85 E-value=29 Score=24.83 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=32.6
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024500 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (266)
Q Consensus 212 KRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~N 258 (266)
....++++|..||.+.=-.++-+++..++..-+.-.+...|..++..
T Consensus 30 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~ 76 (107)
T 2d58_A 30 KLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGE 76 (107)
T ss_dssp HHHHHHHHHTTSCCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 45678999999998876677777777766554444455566665543
No 64
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=30.73 E-value=1e+02 Score=19.77 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHh
Q 024500 188 DKKLFELLVLSGALSELTWPAILSKRHIFREVF 220 (266)
Q Consensus 188 Dr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF 220 (266)
|..|++.|---+.+.|+|...+++ +++++.+
T Consensus 17 ~~el~~~l~~~a~~~g~s~s~~ir--~ai~~~l 47 (55)
T 2k9i_A 17 PQEWHDRLMEIAKEKNLTLSDVCR--LAIKEYL 47 (55)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHH--HHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHH--HHHHHHH
Confidence 567888898888999999998874 4555543
No 65
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=29.94 E-value=13 Score=23.64 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=25.2
Q ss_pred HHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 216 FREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 216 FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
++++|..||.+.=-.++-+++..++..-++-.+...|..++.
T Consensus 3 l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 44 (67)
T 1tiz_A 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFE 44 (67)
T ss_dssp HHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 567777777766566677777666554444344445555543
No 66
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=29.80 E-value=49 Score=23.90 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=32.3
Q ss_pred HHHHh--cCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHH
Q 024500 216 FREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (266)
Q Consensus 216 FReAF--~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAra 261 (266)
|.+.| .++|-..+..++++++.+|.... +-+|.||...|..-+.
T Consensus 27 Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~--~ghr~kIl~aI~~L~~ 72 (81)
T 3bq7_A 27 YKDIFTRHDIRGSGLLHLERRDLKDLGVTK--VGHMKRILCGIKELSR 72 (81)
T ss_dssp GHHHHHHTTCCHHHHTTCCHHHHHHTTCCC--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHCcCCHHHHhHcCCCC--HHHHHHHHHHHHHHHH
Confidence 55555 35788889999999999876532 4678899877766443
No 67
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=28.88 E-value=12 Score=26.83 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=20.9
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhcc
Q 024500 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGS 241 (266)
Q Consensus 212 KRe~FReAF~~FDp~kVA~~~E~~Ie~L~~ 241 (266)
.+..|+++|.-||.+.=-.++-+++..++.
T Consensus 7 ~~~~~~~~F~~~D~d~dG~I~~~el~~~l~ 36 (92)
T 1fi6_A 7 QRQYYVNQFKTIQPDLNGFIPGSAAKEFFT 36 (92)
T ss_dssp HHHHHHHHHTTTCCSTTCEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 456799999999987555555666655544
No 68
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=27.87 E-value=12 Score=30.26 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=19.0
Q ss_pred CcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcc
Q 024500 204 LTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGS 241 (266)
Q Consensus 204 LSW~tILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~ 241 (266)
..|.+ -..++.|+++|.-|| +.=-.++-+++..++.
T Consensus 42 ~~W~~-~~e~~~l~~~F~~fD-d~dG~Is~~El~~~l~ 77 (139)
T 2jq6_A 42 VEWVV-GKDKPTYDEIFYTLS-PVNGKITGANAKKEMV 77 (139)
T ss_dssp CCCGG-GGTHHHHHHHHHHSC-CSSSEEEHHHHHHHHH
T ss_pred CCCCC-hHHHHHHHHHHHHhC-CCCCeECHHHHHHHHH
Confidence 44543 344566777777777 4433344444444443
No 69
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=27.85 E-value=14 Score=24.31 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 213 Re~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
.+.++++|..||.+.=-.++-+++..++..-++-.+...|..++.
T Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 6 KQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp HHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 456788888888776666677777666654444344445555443
No 70
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=27.73 E-value=22 Score=28.48 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=30.0
Q ss_pred HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccc----hhhcchhHHHHHHH
Q 024500 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAA----SSLLSELKLRAIIE 257 (266)
Q Consensus 209 ILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~----~IIRNr~KIrAVI~ 257 (266)
++.+...++++|.-|| +.=-.++-+++..++..- +.-.+...++.++.
T Consensus 71 ~~~~~~~l~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~ 122 (174)
T 2i7a_A 71 LWKRLVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTL 122 (174)
T ss_dssp HHHHHHHHHHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHH
Confidence 3344567899999999 876666666666655443 33334555555554
No 71
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.86 E-value=17 Score=26.36 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=29.7
Q ss_pred HHHHHHhcC--CCH-HHH--hcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024500 214 HIFREVFVG--FDP-IAV--SKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (266)
Q Consensus 214 e~FReAF~~--FDp-~kV--A~~~E~~Ie~L~~d~~IIRNr~KIrAVI~N 258 (266)
+.|.+.|.. ||- +.| ..++++++.+|.... +-||.||...|..
T Consensus 25 ~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~--~ghR~kIl~ai~~ 72 (80)
T 2eam_A 25 PQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILN--SGHRQRILQAIQL 72 (80)
T ss_dssp GGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 456666755 442 345 699999999876542 4689999876654
No 72
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=26.04 E-value=20 Score=22.83 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=9.6
Q ss_pred HhcCCHHHHHHhccc
Q 024500 228 VSKLNEKKLLAAGSA 242 (266)
Q Consensus 228 VA~~~E~~Ie~L~~d 242 (266)
|..|+|++|++|+.|
T Consensus 6 vtrfdekqieelldn 20 (31)
T 4h62_V 6 VTRFDEKQIEELLDN 20 (31)
T ss_dssp ----CHHHHHHHHHH
T ss_pred cccccHHHHHHHHHH
Confidence 567899999998865
No 73
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=25.87 E-value=23 Score=24.24 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHH
Q 024500 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAI 255 (266)
Q Consensus 214 e~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAV 255 (266)
+.++++|..||.+.=-.++-+++..++..-++-.+..-|..+
T Consensus 9 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l 50 (92)
T 2kn2_A 9 EELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQM 50 (92)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 446666666666554445555555544433333333334333
No 74
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=25.52 E-value=48 Score=23.76 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHH
Q 024500 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (266)
Q Consensus 213 Re~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI 256 (266)
...++++|..||.+.=-.++.+++..++..-+.-.+...+..++
T Consensus 84 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 127 (149)
T 2mys_C 84 FEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELM 127 (149)
T ss_pred HHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 36788999999987766677777777665544334444454444
No 75
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=25.44 E-value=36 Score=25.73 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=30.8
Q ss_pred HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 209 ILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
++...+.++++|..||.+.=-.++.+++..++..-+.-.....+..++.
T Consensus 69 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 117 (172)
T 2znd_A 69 VWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIR 117 (172)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445577899999999877666777777666554433334444444443
No 76
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=25.34 E-value=26 Score=24.05 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=18.8
Q ss_pred HhHHHHHHHhcCCC-HHHHh-cCCHHHHHHhccc
Q 024500 211 SKRHIFREVFVGFD-PIAVS-KLNEKKLLAAGSA 242 (266)
Q Consensus 211 kKRe~FReAF~~FD-p~kVA-~~~E~~Ie~L~~d 242 (266)
...+.++++|.-|| .+.=- .++-+++..++..
T Consensus 6 ~~~~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~ 39 (93)
T 1k2h_A 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQT 39 (93)
T ss_dssp HHHHHHHHHHHHHHTTSSCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCCcCccCHHHHHHHHHH
Confidence 34456677777777 45444 5666666655543
No 77
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=25.10 E-value=27 Score=23.91 Aligned_cols=45 Identities=24% Similarity=0.206 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 213 Re~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
...++++|..||.+.=-.++-+++..++..-++-.+...|..++.
T Consensus 19 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 19 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 356788888888776556677777666554444344445555443
No 78
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=24.90 E-value=34 Score=25.81 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=34.4
Q ss_pred CcHHH---HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 204 LTWPA---ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 204 LSW~t---ILkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
++|.. ++...+.++++|..||.+.=-.++.+++..++..-+.-.....+..++.
T Consensus 59 i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 115 (167)
T 1gjy_A 59 MGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAK 115 (167)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 55443 4445578899999999887666777777766654443344445555443
No 79
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=24.68 E-value=35 Score=23.93 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccc---hhhcchhHHHHHHHH
Q 024500 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAA---SSLLSELKLRAIIEN 258 (266)
Q Consensus 213 Re~FReAF~~FDp~kVA~~~E~~Ie~L~~d~---~IIRNr~KIrAVI~N 258 (266)
.+.++++|..||.+.=-.++-+++..++..- +.-.....|..++..
T Consensus 40 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~ 88 (108)
T 2pvb_A 40 LDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLAD 88 (108)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 5678999999999887788888998877654 333455566666653
No 80
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=24.54 E-value=1.7e+02 Score=20.54 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=32.6
Q ss_pred HHHHHh--cCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHH
Q 024500 215 IFREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (266)
Q Consensus 215 ~FReAF--~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~NAra 261 (266)
.|.+.| .+.|-..+..++++++.+|.... +-+|.||..-|..-+.
T Consensus 24 ~y~~~F~~~~I~G~~Ll~L~~~dL~~lGI~~--~g~r~~il~~I~~Lr~ 70 (78)
T 3bs7_A 24 QYEQLFAQHDITGRALLRITDSSLQRMGVTD--NRDREAIWREIVKQRL 70 (78)
T ss_dssp GGHHHHHHTTCCHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHhhCCHHHHhHcCCCC--HHHHHHHHHHHHHHHh
Confidence 355566 46788999999999999876542 4678888777765543
No 81
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=24.25 E-value=57 Score=23.69 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024500 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (266)
Q Consensus 213 Re~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~N 258 (266)
.+.++++|..||.+.=-.++-+++..++..-+.-.+...+..++..
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 128 (146)
T 2qac_A 83 VEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNA 128 (146)
T ss_dssp HHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 5678999999999877778888888777655554566666666653
No 82
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=23.89 E-value=49 Score=25.84 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=30.2
Q ss_pred HHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHH
Q 024500 210 LSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (266)
Q Consensus 210 LkKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI 256 (266)
+...+.++++|..||.+.=-.++.+++..++..-+.-.+...+..++
T Consensus 89 ~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~ 135 (191)
T 1y1x_A 89 HHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALM 135 (191)
T ss_dssp HHHHHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34457788999999987766777777776665544333444444444
No 83
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=23.84 E-value=17 Score=27.28 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=19.5
Q ss_pred HhHHHHHHHhcCCCHHHHhcCCHHHHHHhcc
Q 024500 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGS 241 (266)
Q Consensus 211 kKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~ 241 (266)
..++.|+++|.-||.+.=-.++-+++..++.
T Consensus 11 ~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~ 41 (111)
T 2kgr_A 11 SSRLKYRQLFNSHDKTMSGHLTGPQARTILM 41 (111)
T ss_dssp HHHHHHHHHHHTTSCSSCCEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 3456788888888876544455555555444
No 84
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=23.71 E-value=47 Score=24.39 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 213 Re~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
.+.++++|..||.+.=-.++-+++..++..-+.-.+...|..++.
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 127 (156)
T 1wdc_C 83 FADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIK 127 (156)
T ss_dssp HHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 367889999999887667777777777665554445555666554
No 85
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=22.33 E-value=1.3e+02 Score=23.32 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=30.6
Q ss_pred HHHHHHHhccCcHHHHHHhH---------HHHHHHhcC--CCHHHHhc--CCHHHHHHhc
Q 024500 194 LLVLSGALSELTWPAILSKR---------HIFREVFVG--FDPIAVSK--LNEKKLLAAG 240 (266)
Q Consensus 194 ~L~LEgfQAGLSW~tILkKR---------e~FReAF~~--FDp~kVA~--~~E~~Ie~L~ 240 (266)
+.+++.|+.|+++..|-..| +.-+-+..| +|+..+-. +++++++.+.
T Consensus 23 ~~t~~l~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~i~~~i~~~l~~~~~~~I~ 82 (122)
T 3iuo_A 23 VSIVQQIDRKVALDDIAVSHGLDFPELLSEVETIVYSGTRINIDYFINEVMDEDHLEDIF 82 (122)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCCCHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHcccccCHHHHHHHH
Confidence 36677777777777666555 222334555 68888877 8888876543
No 86
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.18 E-value=11 Score=27.12 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=20.0
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhccc
Q 024500 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGSA 242 (266)
Q Consensus 212 KRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d 242 (266)
.++.|+++|..||.+.=-.++-+++..++..
T Consensus 8 ~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~ 38 (95)
T 1c07_A 8 EKAKYDEIFLKTDKDMDGFVSGLEVREIFLK 38 (95)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 3566788888888765555666666655543
No 87
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=22.17 E-value=49 Score=25.29 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=32.4
Q ss_pred HhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 211 kKRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
...+.++++|.-||.+.=-.++-+++..++..-+.-.+...|..++.
T Consensus 45 ~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~g~~~~~~~~~~l~~ 91 (147)
T 1wy9_A 45 SKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIR 91 (147)
T ss_dssp HHHHHHHHHHTTSCCCTTSSEEHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45567999999999887667777777776655444445555655554
No 88
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=21.90 E-value=57 Score=23.92 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024500 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (266)
Q Consensus 214 e~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~N 258 (266)
..++++|..||.+.=-.++-+++..++..-++-.+...|..++..
T Consensus 16 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 60 (153)
T 2ovk_B 16 QELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKE 60 (153)
T ss_dssp HHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 567888888888877788888888877765655566666666543
No 89
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=21.72 E-value=48 Score=22.01 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccch-hhcchhHHHHHHH
Q 024500 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAAS-SLLSELKLRAIIE 257 (266)
Q Consensus 213 Re~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~-IIRNr~KIrAVI~ 257 (266)
.+.++ +|..||.+.=-.++-+++..++..-+ .-.+..-|..++.
T Consensus 8 ~~~l~-~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 52 (81)
T 1c7v_A 8 EEILR-AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMK 52 (81)
T ss_dssp HHHHH-HHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHH
T ss_pred HHHHH-HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 35577 88888877766777777777766544 3344555555543
No 90
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=21.55 E-value=54 Score=24.54 Aligned_cols=45 Identities=7% Similarity=-0.014 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchh-hcchhHHHHHHH
Q 024500 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASS-LLSELKLRAIIE 257 (266)
Q Consensus 213 Re~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~I-IRNr~KIrAVI~ 257 (266)
.+.++++|..||.+.=-.++-+++..++..-++ -.....|..++.
T Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~ 84 (135)
T 3h4s_E 39 VSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVR 84 (135)
T ss_dssp HHHHHHHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 356788888888877777777777776665553 344555555554
No 91
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.24 E-value=21 Score=26.25 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=26.2
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024500 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (266)
Q Consensus 212 KRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI~ 257 (266)
..+.|+++|.-||.+.=-.++-+++..++..-++ ...-|..|++
T Consensus 9 ~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l--~~~~l~~i~~ 52 (99)
T 1qjt_A 9 GNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGL--PDLILGKIWD 52 (99)
T ss_dssp TCTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSSS--CHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCC--CHHHHHHHHH
Confidence 3467888888888776555666666665544331 3334444443
No 92
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=20.96 E-value=46 Score=23.31 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=33.7
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhcccc---hhhcchhHHHHHHHH
Q 024500 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGSAA---SSLLSELKLRAIIEN 258 (266)
Q Consensus 212 KRe~FReAF~~FDp~kVA~~~E~~Ie~L~~d~---~IIRNr~KIrAVI~N 258 (266)
..+.++++|..||.+.=-.++-+++..++..- +.-.+...|+.++.-
T Consensus 40 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~ 89 (110)
T 1pva_A 40 SANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKA 89 (110)
T ss_dssp CHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 45778999999998887778888888877654 333455566666543
No 93
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=20.54 E-value=40 Score=23.93 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=19.4
Q ss_pred HhHHHHHHHhcCCCHHHHh---cCCHHHHHHhccc
Q 024500 211 SKRHIFREVFVGFDPIAVS---KLNEKKLLAAGSA 242 (266)
Q Consensus 211 kKRe~FReAF~~FDp~kVA---~~~E~~Ie~L~~d 242 (266)
+-.+.++++|..|| ..=- .++-+++..++..
T Consensus 6 ~~~~~l~~~F~~~D-~~dG~~g~Is~~EL~~~l~~ 39 (92)
T 3rm1_A 6 KAVVALIDVFHQYS-GREGDKHKLKKSELKELINN 39 (92)
T ss_dssp HHHHHHHHHHHHHH-TSSSSTTSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-cCCCCcCeECHHHHHHHHHH
Confidence 34466777887777 4322 5667777666554
No 94
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=20.40 E-value=57 Score=25.17 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHH
Q 024500 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (266)
Q Consensus 213 Re~FReAF~~FDp~kVA~~~E~~Ie~L~~d~~IIRNr~KIrAVI 256 (266)
.+.+++||.-||.+.=-.++-+++..++..-+.-.+..-|..++
T Consensus 84 ~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~ 127 (153)
T 3i5g_B 84 EDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVW 127 (153)
T ss_dssp HHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHH
Confidence 45788999999987766667777766665544333444444444
Done!