Query 024502
Match_columns 266
No_of_seqs 191 out of 1735
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:04:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1473 AbgB Metal-dependent a 100.0 6.9E-36 1.5E-40 266.0 20.7 245 2-261 116-388 (392)
2 PLN02693 IAA-amino acid hydrol 100.0 4.4E-30 9.5E-35 234.7 22.1 242 2-261 149-420 (437)
3 PLN02280 IAA-amino acid hydrol 100.0 6.1E-30 1.3E-34 235.4 22.2 244 2-261 199-473 (478)
4 PRK08588 succinyl-diaminopimel 100.0 1.4E-28 3.1E-33 221.4 23.6 244 2-260 113-374 (377)
5 PRK06915 acetylornithine deace 100.0 7.2E-27 1.6E-31 213.3 23.0 248 2-260 147-416 (422)
6 PRK13013 succinyl-diaminopimel 100.0 8.4E-27 1.8E-31 213.2 22.8 257 2-263 136-424 (427)
7 PRK08651 succinyl-diaminopimel 100.0 1.4E-26 3E-31 209.6 21.6 238 12-261 134-390 (394)
8 TIGR01910 DapE-ArgE acetylorni 99.9 9E-27 1.9E-31 209.6 17.8 235 2-248 118-371 (375)
9 PRK13009 succinyl-diaminopimel 99.9 6.4E-26 1.4E-30 203.9 22.4 245 2-261 112-373 (375)
10 PRK07522 acetylornithine deace 99.9 5.6E-26 1.2E-30 205.0 21.1 245 2-261 117-383 (385)
11 TIGR01246 dapE_proteo succinyl 99.9 1.3E-25 2.8E-30 201.7 21.6 244 2-260 109-369 (370)
12 TIGR01891 amidohydrolases amid 99.9 6.7E-26 1.5E-30 203.1 18.7 213 3-232 104-338 (363)
13 PRK05111 acetylornithine deace 99.9 7.3E-25 1.6E-29 197.6 22.5 238 10-262 130-381 (383)
14 TIGR01892 AcOrn-deacetyl acety 99.9 4.9E-25 1.1E-29 197.3 21.1 230 2-248 111-355 (364)
15 PRK07338 hypothetical protein; 99.9 5E-25 1.1E-29 200.0 20.7 236 2-261 142-397 (402)
16 PRK06133 glutamate carboxypept 99.9 4.9E-25 1.1E-29 200.5 19.5 238 2-260 149-405 (410)
17 PRK08737 acetylornithine deace 99.9 1E-24 2.3E-29 195.3 20.4 228 11-251 117-355 (364)
18 PRK09290 allantoate amidohydro 99.9 6.4E-25 1.4E-29 200.0 19.4 242 2-261 105-409 (413)
19 PRK12893 allantoate amidohydro 99.9 1.1E-24 2.3E-29 198.4 19.8 242 1-261 107-408 (412)
20 PRK08652 acetylornithine deace 99.9 1.8E-24 3.8E-29 192.5 20.7 226 11-261 107-344 (347)
21 PRK06837 acetylornithine deace 99.9 3.2E-24 7E-29 196.1 21.6 247 2-260 151-420 (427)
22 PRK12891 allantoate amidohydro 99.9 1.7E-24 3.7E-29 197.2 18.7 245 1-261 107-408 (414)
23 PRK00466 acetyl-lysine deacety 99.9 3.8E-24 8.3E-29 190.6 20.2 218 13-261 112-342 (346)
24 PRK12892 allantoate amidohydro 99.9 2.7E-24 5.9E-29 195.8 19.5 241 2-261 106-409 (412)
25 PRK13004 peptidase; Reviewed 99.9 1.5E-23 3.2E-28 190.2 22.9 244 1-260 122-394 (399)
26 PRK13007 succinyl-diaminopimel 99.9 4.8E-24 1E-28 190.2 19.4 222 10-248 112-342 (352)
27 PRK12890 allantoate amidohydro 99.9 4.8E-24 1E-28 194.3 19.3 245 2-261 106-410 (414)
28 PRK13983 diaminopimelate amino 99.9 6.1E-24 1.3E-28 192.5 19.9 236 2-249 130-389 (400)
29 TIGR01880 Ac-peptdase-euk N-ac 99.9 4.6E-24 1E-28 193.6 17.5 250 2-261 125-397 (400)
30 TIGR03526 selenium_YgeY putati 99.9 7E-23 1.5E-27 185.6 22.3 242 2-261 121-393 (395)
31 TIGR01879 hydantase amidase, h 99.9 2.6E-23 5.6E-28 188.7 19.2 241 1-260 98-400 (401)
32 TIGR01900 dapE-gram_pos succin 99.9 4.9E-23 1.1E-27 185.2 20.8 210 8-232 124-361 (373)
33 PRK07473 carboxypeptidase; Pro 99.9 4.8E-23 1.1E-27 185.3 20.1 233 2-261 125-375 (376)
34 PRK08262 hypothetical protein; 99.9 2.2E-23 4.8E-28 193.6 17.7 253 2-261 167-483 (486)
35 TIGR03176 AllC allantoate amid 99.9 3.4E-23 7.3E-28 188.0 18.3 243 1-261 100-402 (406)
36 TIGR03320 ygeY M20/DapE family 99.9 1.5E-22 3.3E-27 183.3 22.3 243 2-260 121-392 (395)
37 PRK04443 acetyl-lysine deacety 99.9 1.5E-22 3.2E-27 180.5 21.2 228 8-261 107-348 (348)
38 TIGR01883 PepT-like peptidase 99.9 2E-23 4.3E-28 186.9 14.7 221 2-248 113-351 (361)
39 PRK08596 acetylornithine deace 99.9 2.2E-22 4.7E-27 183.8 21.3 245 2-261 131-415 (421)
40 PRK09133 hypothetical protein; 99.9 2.4E-22 5.3E-27 186.0 17.5 248 2-260 154-467 (472)
41 PRK06446 hypothetical protein; 99.9 1.2E-21 2.7E-26 179.6 18.5 250 3-261 117-433 (436)
42 TIGR01902 dapE-lys-deAc N-acet 99.9 2.9E-21 6.4E-26 171.3 20.2 220 12-261 101-333 (336)
43 PRK13799 unknown domain/N-carb 99.9 2.5E-21 5.3E-26 183.0 20.2 244 1-261 282-588 (591)
44 PRK13590 putative bifunctional 99.9 3.2E-21 6.9E-26 182.3 20.8 242 1-261 282-586 (591)
45 PRK13381 peptidase T; Provisio 99.9 2.7E-21 5.9E-26 175.7 17.7 232 2-261 151-402 (404)
46 PRK05469 peptidase T; Provisio 99.9 2E-21 4.4E-26 176.7 16.6 231 2-260 153-403 (408)
47 PRK07906 hypothetical protein; 99.9 9.6E-21 2.1E-25 173.2 17.9 246 2-259 118-424 (426)
48 KOG2275 Aminoacylase ACY1 and 99.9 4.9E-21 1.1E-25 167.1 14.4 226 1-232 141-385 (420)
49 PRK08201 hypothetical protein; 99.9 2.4E-20 5.3E-25 172.0 19.4 250 2-261 133-453 (456)
50 PRK09104 hypothetical protein; 99.8 6.2E-20 1.4E-24 169.6 19.2 252 2-261 141-461 (464)
51 COG0624 ArgE Acetylornithine d 99.8 1.2E-19 2.5E-24 165.2 20.5 242 2-261 129-406 (409)
52 PRK07907 hypothetical protein; 99.8 2.8E-19 6.1E-24 164.6 20.1 246 8-261 140-446 (449)
53 TIGR01886 dipeptidase dipeptid 99.8 5.4E-19 1.2E-23 163.2 21.4 240 1-260 129-463 (466)
54 PRK07079 hypothetical protein; 99.8 3.6E-19 7.9E-24 164.7 20.0 246 8-261 147-454 (469)
55 TIGR01882 peptidase-T peptidas 99.8 6.4E-20 1.4E-24 167.0 13.4 223 2-251 155-397 (410)
56 PRK15026 aminoacyl-histidine d 99.8 3.8E-19 8.2E-24 164.4 16.1 141 2-170 125-287 (485)
57 PRK07318 dipeptidase PepV; Rev 99.8 6.5E-19 1.4E-23 162.9 17.1 241 1-260 130-463 (466)
58 PRK06156 hypothetical protein; 99.8 4.8E-18 1E-22 158.9 20.5 242 2-261 167-514 (520)
59 TIGR01893 aa-his-dipept aminoa 99.8 2.2E-18 4.8E-23 159.7 17.6 221 10-261 126-476 (477)
60 PRK07205 hypothetical protein; 99.8 1E-16 2.2E-21 147.5 20.1 240 2-261 129-441 (444)
61 PF07687 M20_dimer: Peptidase 99.8 9.9E-18 2.2E-22 124.9 11.0 109 62-175 1-109 (111)
62 TIGR01887 dipeptidaselike dipe 99.7 9.4E-17 2E-21 147.5 17.8 228 2-248 119-438 (447)
63 PRK08554 peptidase; Reviewed 99.7 4.7E-16 1E-20 142.6 15.0 245 2-260 116-435 (438)
64 COG2195 PepD Di- and tripeptid 99.2 4E-11 8.7E-16 107.8 7.5 197 9-230 165-381 (414)
65 KOG2276 Metalloexopeptidases [ 98.7 7.3E-07 1.6E-11 78.5 14.1 251 1-262 144-471 (473)
66 COG4187 RocB Arginine degradat 98.2 6E-06 1.3E-10 73.6 7.9 156 9-175 159-327 (553)
67 PF01546 Peptidase_M20: Peptid 97.5 5.3E-05 1.1E-09 61.1 2.2 56 2-60 49-105 (189)
68 PF04389 Peptidase_M28: Peptid 92.6 0.078 1.7E-06 42.3 2.2 51 2-55 39-89 (179)
69 PRK09864 putative peptidase; P 89.4 0.49 1.1E-05 42.4 4.1 39 11-57 193-231 (356)
70 TIGR03107 glu_aminopep glutamy 89.3 0.49 1.1E-05 42.4 4.0 40 10-57 197-236 (350)
71 PF05343 Peptidase_M42: M42 gl 88.8 0.48 1E-05 41.3 3.6 39 10-56 153-191 (292)
72 COG1363 FrvX Cellulase M and r 88.2 0.45 9.8E-06 42.5 3.1 42 8-57 197-238 (355)
73 PRK10199 alkaline phosphatase 87.9 0.44 9.5E-06 42.4 2.8 33 2-39 156-188 (346)
74 PRK09961 exoaminopeptidase; Pr 86.9 0.98 2.1E-05 40.4 4.5 40 10-57 185-224 (344)
75 TIGR03106 trio_M42_hydro hydro 84.3 0.63 1.4E-05 41.5 2.0 26 2-27 196-221 (343)
76 PRK15026 aminoacyl-histidine d 72.0 10 0.00022 35.6 6.1 127 124-262 344-483 (485)
77 COG2234 Iap Predicted aminopep 61.8 5.9 0.00013 36.3 2.4 35 2-41 241-275 (435)
78 PF01546 Peptidase_M20: Peptid 59.2 4.9 0.00011 31.8 1.2 54 206-259 133-188 (189)
79 KOG2195 Transferrin receptor a 54.7 9 0.0002 37.6 2.3 35 3-40 387-421 (702)
80 KOG2194 Aminopeptidases of the 33.1 23 0.0005 35.3 1.4 49 2-55 176-225 (834)
81 cd06406 PB1_P67 A PB1 domain i 29.6 1.3E+02 0.0028 20.8 4.2 31 144-174 8-38 (80)
82 cd04869 ACT_GcvR_2 ACT domains 29.5 1.7E+02 0.0037 19.3 5.2 34 143-176 43-76 (81)
83 PRK02260 S-ribosylhomocysteina 28.5 51 0.0011 25.9 2.3 17 223-239 72-90 (158)
84 cd04870 ACT_PSP_1 CT domains f 27.8 1.8E+02 0.004 19.1 5.3 34 143-176 37-70 (75)
85 cd06411 PB1_p51 The PB1 domain 26.1 1.6E+02 0.0036 20.2 4.2 32 144-175 4-35 (78)
86 PF05450 Nicastrin: Nicastrin; 23.7 74 0.0016 26.8 2.7 27 10-39 48-74 (234)
87 cd04871 ACT_PSP_2 ACT domains 22.4 1.8E+02 0.004 19.9 4.1 33 142-175 46-78 (84)
88 TIGR03406 FeS_long_SufT probab 22.2 4.1E+02 0.0089 21.2 6.9 30 144-173 114-143 (174)
89 PF02664 LuxS: S-Ribosylhomocy 21.4 24 0.00053 27.6 -0.6 18 223-240 72-91 (157)
No 1
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=100.00 E-value=6.9e-36 Score=265.99 Aligned_cols=245 Identities=20% Similarity=0.259 Sum_probs=208.6
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCC----CceE----EeeeeEEEEEE
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK----QPCI----GTGGMIPWKLH 73 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~----~i~~----~~~g~~~~~i~ 73 (266)
++|++++.+++|+|+|+|||+||.+ .|++.|+++|.++++ +|+++..|++++ .+.+ ...+...++|+
T Consensus 116 ~~L~~~~~~~~Gtv~~ifQPAEE~~----~Ga~~mi~~G~~~~~-vD~v~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~ 190 (392)
T COG1473 116 LALAEHKDNLPGTVRLIFQPAEEGG----GGAKAMIEDGVFDDF-VDAVFGLHPGPGLPVGTVALRPGALMAAADEFEIT 190 (392)
T ss_pred HHHHhhhhhCCcEEEEEeccccccc----ccHHHHHhcCCcccc-ccEEEEecCCCCCCCceEEeecccceeecceEEEE
Confidence 5788887789999999999999998 489999999999987 899999999654 3332 26788999999
Q ss_pred EEecCCCccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeC
Q 024502 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (266)
Q Consensus 74 v~G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~ 153 (266)
++|+++|++.||.++||+.+++.++..|+.+..+..+|.+ +.++++|.++ +|+..||||+++++.+++|.
T Consensus 191 ~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~~---------~~vv~vg~~~-aG~a~NVIpd~A~l~gtvR~ 260 (392)
T COG1473 191 FKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLD---------SAVVTVGKIE-AGTAANVIPDSAELEGTIRT 260 (392)
T ss_pred EEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCcc---------CeEEEEEEec-CCCcCCcCCCeeEEEEEeec
Confidence 9999999999999999999999999999999888877654 5789999999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhc--cee-ee-ccCCCCccCCcc---------ccccCCccc--ccCCCCCccccccccc
Q 024502 154 TPFYNVTDVMKRLQEYVDDINEN--IEK-LD-TRGPVSKYVLPD---------ENIRGRHVL--SLHYLTLGRDDFRIFP 218 (266)
Q Consensus 154 ~~~~~~~~v~~~i~~~i~~~~~~--~~~-~~-~~~~p~~~~~~~---------~~~~g~~~~--~~~~~~~gg~D~~~~~ 218 (266)
++.+..+.+.++++++++.++.. ++. +. ...+|+++||+. ++..++..+ .....++|||||++|+
T Consensus 261 ~~~~~~~~~~~~i~~ia~g~a~~~g~~~ei~~~~~~p~~~Nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsEDf~~~~ 340 (392)
T COG1473 261 FSDEVREKLEARIERIAKGIAAAYGAEAEIDYERGYPPVVNDPALTDLLAEAAEEVGGEEVVVVELPPSMAGSEDFGYYL 340 (392)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecCCCCCccCCHHHHHHHHHHHHHhccccceecccCCCCCccchHHHHH
Confidence 99999999999999999988754 332 33 567899999998 234554322 2223456999999999
Q ss_pred ccccCceeccCccc-c----eeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 219 LRWQRHKIKFGRLK-C----IFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 219 ~~~~~~~v~~G~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
+++|...+.+|... . ..|.+.|+++++.+..+...++++....
T Consensus 341 ~~~Pg~~~~lG~~~~~~~~~~~H~p~~~~de~~l~~g~~~~~~~~~~~ 388 (392)
T COG1473 341 EKVPGAFFFLGTGSADGGTYPLHHPKFDFDEAALATGVKLLAALALLY 388 (392)
T ss_pred HhCCeeEEEeecCcCCCCcccccCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999765 2 3889999999999999999999987654
No 2
>PLN02693 IAA-amino acid hydrolase
Probab=99.97 E-value=4.4e-30 Score=234.66 Aligned_cols=242 Identities=18% Similarity=0.260 Sum_probs=188.0
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCC----CceE----EeeeeEEEEEE
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK----QPCI----GTGGMIPWKLH 73 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~----~i~~----~~~g~~~~~i~ 73 (266)
++|++.+..++++|+|+||||||++ .|++.|+++|.+++ .|+++..|..+. .+.. .++|..+++|+
T Consensus 149 ~~L~~~~~~~~g~V~~if~pdEE~~----~Ga~~~i~~g~~~~--~~~iig~h~~p~~~~g~~~~~~g~~~~G~~~~~i~ 222 (437)
T PLN02693 149 KILQEHRHHLQGTVVLIFQPAEEGL----SGAKKMREEGALKN--VEAIFGIHLSPRTPFGKAASRAGSFMAGAGVFEAV 222 (437)
T ss_pred HHHHhCcccCCceEEEEEEEcccch----hhHHHHHHCCCCCC--CCEEEEEecCCCCCCeeEEeccCcccccceEEEEE
Confidence 5677777678899999999999953 69999999987654 367777776543 2222 25788999999
Q ss_pred EEecCCCccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeC
Q 024502 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (266)
Q Consensus 74 v~G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~ 153 (266)
++|+++|++.|+.|+|||..+++++.+|+++..+...+.. +.++++|.|+ ||...|+||++|++++|+|+
T Consensus 223 v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~~~~~---------~~ti~vg~i~-GG~~~NvVPd~a~~~~diR~ 292 (437)
T PLN02693 223 ITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLD---------SKVVTVSKVN-GGNAFNVIPDSITIGGTLRA 292 (437)
T ss_pred EEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccCCCCC---------CcEEEEEEEE-cCCCCceECCeEEEEEEEec
Confidence 9999999999999999999999999999987544333222 5789999999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhc--c--ee-ee---ccCCCCccCCcc---------ccccCCcccccCCCCCccccccc
Q 024502 154 TPFYNVTDVMKRLQEYVDDINEN--I--EK-LD---TRGPVSKYVLPD---------ENIRGRHVLSLHYLTLGRDDFRI 216 (266)
Q Consensus 154 ~~~~~~~~v~~~i~~~i~~~~~~--~--~~-~~---~~~~p~~~~~~~---------~~~~g~~~~~~~~~~~gg~D~~~ 216 (266)
.+. .+++.++|+++++.++.. + ++ +. ...+|+..|+++ ++++|...+....+.+|++||++
T Consensus 293 ~~~--~~~i~~~i~~i~~~~a~~~g~~~e~~~~~~~~~~~~~~~nd~~l~~~~~~~~~~~~G~~~~~~~~~~~gseDf~~ 370 (437)
T PLN02693 293 FTG--FTQLQQRIKEIITKQAAVHRCNASVNLTPNGREPMPPTVNNMDLYKQFKKVVRDLLGQEAFVEAAPEMGSEDFSY 370 (437)
T ss_pred CCH--HHHHHHHHHHHHHHHHHHhCCcEEEEEeecCccCCCCccCCHHHHHHHHHHHHHhcCCcceeecCCCceechHHH
Confidence 986 468899999988876432 2 21 11 124567777766 23456543322345789999999
Q ss_pred ccccccCceeccCccc-----ceeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 217 FPLRWQRHKIKFGRLK-----CIFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 217 ~~~~~~~~~v~~G~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
|++.+|...+.+|+.. ...|..-|.++.+.+..+...+++++..+
T Consensus 371 ~~~~vP~~~~~lG~~~~~~~~~~~H~~~f~~de~~l~~~~~~~~~~~~~~ 420 (437)
T PLN02693 371 FAETIPGHFSLLGMQDETNGYASSHSPLYRINEDVLPYGAAIHATMAVQY 420 (437)
T ss_pred HHHHhhhhEEEEecCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999998878888762 36889999999999999999998877553
No 3
>PLN02280 IAA-amino acid hydrolase
Probab=99.97 E-value=6.1e-30 Score=235.39 Aligned_cols=244 Identities=17% Similarity=0.222 Sum_probs=189.5
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCc--------eEEeeeeEEEEEE
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQP--------CIGTGGMIPWKLH 73 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i--------~~~~~g~~~~~i~ 73 (266)
++|++.+.+++++|.|+||||||+| .|++.|+++|.+++ +|.++..|+.+... ....+|..+++|+
T Consensus 199 ~~L~~~~~~~~g~V~~if~pdEE~g----~Ga~~li~~g~~~~--~d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~ 272 (478)
T PLN02280 199 KILKSREHLLKGTVVLLFQPAEEAG----NGAKRMIGDGALDD--VEAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAV 272 (478)
T ss_pred HHHHhccccCCceEEEEeccccccc----chHHHHHHCCCCcC--CCEEEEEecCCCCCCceeEecccccccceeEEEEE
Confidence 4566777778999999999999986 69999999998775 47888888753211 1235699999999
Q ss_pred EEecCCCccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeC
Q 024502 74 VTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRL 153 (266)
Q Consensus 74 v~G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~ 153 (266)
++|+++|++.|+.|+||+.++++++.+++++..+...+.. ..++++|.|+ ||...|+||++|++.+|+|+
T Consensus 273 v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~~~~~~---------~~tvnvg~I~-GG~~~NvIPd~~~l~~diR~ 342 (478)
T PLN02280 273 ISGKKGRAGSPHHSVDLILAASAAVISLQGIVSREANPLD---------SQVVSVTTMD-GGNNLDMIPDTVVLGGTFRA 342 (478)
T ss_pred EECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcccCCCC---------CcEEEEEEEE-ccCCCCEeCCEEEEEEEEec
Confidence 9999999999999999999999999999887543322221 4689999999 99999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhh--cce--e-e-e--ccCCCCccCCccc---------cccCCcccccCCCCCccccccc
Q 024502 154 TPFYNVTDVMKRLQEYVDDINE--NIE--K-L-D--TRGPVSKYVLPDE---------NIRGRHVLSLHYLTLGRDDFRI 216 (266)
Q Consensus 154 ~~~~~~~~v~~~i~~~i~~~~~--~~~--~-~-~--~~~~p~~~~~~~~---------~~~g~~~~~~~~~~~gg~D~~~ 216 (266)
++.++.+++.++|+++++..+. +++ + + + ...+||..+++.. +..|...+....+.+|++||++
T Consensus 343 ~~~e~~e~l~~~I~~~~~~~a~~~g~~~~v~~~~~~~~~~pp~~n~~~l~~~~~~~a~~~~G~~~~~~~~~~~g~tD~~~ 422 (478)
T PLN02280 343 FSNTSFYQLLKRIQEVIVEQAGVFRCSATVDFFEKQNTIYPPTVNNDAMYEHVRKVAIDLLGPANFTVVPPMMGAEDFSF 422 (478)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEeccccCCCCCccCCHHHHHHHHHHHHHhcCccccccCCCCeeechHHH
Confidence 9999999999999999987653 222 2 1 1 1247888887761 2245432222345789999999
Q ss_pred ccccccCceeccCcc----c--ceeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 217 FPLRWQRHKIKFGRL----K--CIFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 217 ~~~~~~~~~v~~G~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
|.+.+|.-.+.+|+. + +..|..-|.++...+..+.+-+++++.++
T Consensus 423 ~~~~vP~i~~glG~~~~~~G~~~~~Htp~e~id~~~L~~~~~~~~~~~~~~ 473 (478)
T PLN02280 423 YSQVVPAAFYYIGIRNETLGSTHTGHSPYFMIDEDVLPIGAAVHAAIAERY 473 (478)
T ss_pred HHhhCCEEEEEEeecCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 998776655555652 2 35678888889999999999999998764
No 4
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.97 E-value=1.4e-28 Score=221.41 Aligned_cols=244 Identities=20% Similarity=0.232 Sum_probs=183.3
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEEeeeeEEEEEEEEecCCCc
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~~Ha 81 (266)
+.|++.+..++++|.|+|++|||.|+ .|++.|++++.+++ +|++++.||+...+.++++|..+++|+++|+++|+
T Consensus 113 ~~l~~~~~~~~~~i~l~~~~dEE~g~---~G~~~~~~~~~~~~--~d~~i~~ep~~~~i~~~~~G~~~~~i~~~G~~~Hs 187 (377)
T PRK08588 113 IELKEQGQLLNGTIRLLATAGEEVGE---LGAKQLTEKGYADD--LDALIIGEPSGHGIVYAHKGSMDYKVTSTGKAAHS 187 (377)
T ss_pred HHHHHcCCCCCCcEEEEEEcccccCc---hhHHHHHhcCccCC--CCEEEEecCCCceeEEEEEEEEEEEEEEEeechhc
Confidence 45677777889999999999999987 79999999876554 47899999887778889999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHH
Q 024502 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (266)
Q Consensus 82 s~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~ 161 (266)
|.|+.|.|||..+++++.+++++..+ +.+. ....+..+++++.|+ +|...|+||++|++++|+|+.+.++.++
T Consensus 188 s~p~~g~nAi~~~~~~l~~l~~~~~~-~~~~-----~~~~~~~t~~v~~i~-gG~~~nvip~~~~~~~d~R~~p~~~~~~ 260 (377)
T PRK08588 188 SMPELGVNAIDPLLEFYNEQKEYFDS-IKKH-----NPYLGGLTHVVTIIN-GGEQVNSVPDEAELEFNIRTIPEYDNDQ 260 (377)
T ss_pred cCCccccCHHHHHHHHHHHHHHHhhh-hccc-----CccCCCCceeeeEEe-CCCcCCcCCCeEEEEEEeccCCCCCHHH
Confidence 99999999999999999999875322 1110 011235789999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc--cee-ee-ccCCCCccCCccc-----------cccCCcccccCCCCCccccccccccccc-Cce
Q 024502 162 VMKRLQEYVDDINEN--IEK-LD-TRGPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRDDFRIFPLRWQ-RHK 225 (266)
Q Consensus 162 v~~~i~~~i~~~~~~--~~~-~~-~~~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~D~~~~~~~~~-~~~ 225 (266)
+.++|++.+++.... +++ ++ ...+||..++++. +.+|.. . ......|++|+++|.+..+ .+.
T Consensus 261 v~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~g~~-~-~~~~~~g~tD~~~~~~~~~~ip~ 338 (377)
T PRK08588 261 VISLLQEIINEVNQNGAAQLSLDIYSNHRPVASDKDSKLVQLAKDVAKSYVGQD-I-PLSAIPGATDASSFLKKKPDFPV 338 (377)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEecCCCCcCCCCCCHHHHHHHHHHHHhhCCC-C-ceecCCCcccHHHHhhhcCCCCE
Confidence 999999999876532 222 22 3456777776651 234432 1 2245688999999985443 467
Q ss_pred eccCcc-cc-eeecchhhhhhhhhHHHHHHHHHHHHH
Q 024502 226 IKFGRL-KC-IFYLSIYKFISNLFSVLNKSLAAVISR 260 (266)
Q Consensus 226 v~~G~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
+.|||. .. .+.-..|...+++. .+.+-+.+++.+
T Consensus 339 i~~Gpg~~~~~H~~~E~i~~~~l~-~~~~~~~~~~~~ 374 (377)
T PRK08588 339 IIFGPGNNLTAHQVDEYVEKDMYL-KFIDIYKEIIIQ 374 (377)
T ss_pred EEECCCCCccCCCCCceeEHHHHH-HHHHHHHHHHHH
Confidence 889998 43 34445555555444 344445555543
No 5
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.95 E-value=7.2e-27 Score=213.31 Aligned_cols=248 Identities=17% Similarity=0.190 Sum_probs=178.0
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEEeeeeEEEEEEEEecCCCc
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~~Ha 81 (266)
++|++.+..++++|.|+|++|||+|+ .|+..+++.+ +++|++++.+|+...++.+++|..+++|+++|+++|+
T Consensus 147 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~G~~~~~~~~----~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~H~ 219 (422)
T PRK06915 147 EALIESGIELKGDVIFQSVIEEESGG---AGTLAAILRG----YKADGAIIPEPTNMKFFPKQQGSMWFRLHVKGKAAHG 219 (422)
T ss_pred HHHHHcCCCCCCcEEEEEecccccCC---cchHHHHhcC----cCCCEEEECCCCCccceeecccEEEEEEEEEeecccc
Confidence 45677777788999999999999987 7988888765 3578999999888778889999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHH
Q 024502 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTD 161 (266)
Q Consensus 82 s~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~ 161 (266)
|.|+.|+||+.++++++.+++++..+............+..+.+++++.|+ ||...|+||++|++.+|+|+.+.++.++
T Consensus 220 s~p~~g~nAi~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~nvvP~~a~~~~d~R~~p~~~~~~ 298 (422)
T PRK06915 220 GTRYEGVSAIEKSMFVIDHLRKLEEKRNDRITDPLYKGIPIPIPINIGKIE-GGSWPSSVPDSVILEGRCGIAPNETIEA 298 (422)
T ss_pred CCCCcCcCHHHHHHHHHHHHHHHHHHhccccCCCcccCCCCCceEeEEEee-CCCCCCccCcEEEEEEEEEECCCCCHHH
Confidence 999999999999999999998763211000000000011124589999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc--------cee-eeccCCCCccCCcc-----------ccccCCcccccCCCCCcccccccccccc
Q 024502 162 VMKRLQEYVDDINEN--------IEK-LDTRGPVSKYVLPD-----------ENIRGRHVLSLHYLTLGRDDFRIFPLRW 221 (266)
Q Consensus 162 v~~~i~~~i~~~~~~--------~~~-~~~~~~p~~~~~~~-----------~~~~g~~~~~~~~~~~gg~D~~~~~~~~ 221 (266)
+.++|++.+++.+.. +++ ......+|...+++ .++.|... ....+.+++|+++|.+..
T Consensus 299 v~~~i~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~lv~~l~~a~~~~~G~~~--~~~~~~g~tD~~~~~~~~ 376 (422)
T PRK06915 299 AKEEFENWIAELNDVDEWFVEHPVEVEWFGARWVPGELEENHPLMTTLEHNFVEIEGNKP--IIEASPWGTDGGLLTQIA 376 (422)
T ss_pred HHHHHHHHHHHHhccChhhhcCCceEEeecccCCcccCCCCCHHHHHHHHHHHHHhCCCC--eeceeeeeccHHHHhccC
Confidence 999999999886542 221 11111233322222 12344431 124567899999999752
Q ss_pred cCceeccCccc-ce-eecchhhhhhhhhHHHHHHHHHHHHH
Q 024502 222 QRHKIKFGRLK-CI-FYLSIYKFISNLFSVLNKSLAAVISR 260 (266)
Q Consensus 222 ~~~~v~~G~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
..+.+.|||.. .. +.-..|+..+.+ ..+..-+++++.+
T Consensus 377 giP~v~fGpg~~~~aH~~dE~v~~~~l-~~~~~~~~~ll~~ 416 (422)
T PRK06915 377 GVPTIVFGPGETKVAHYPNEYIEVDKM-IAAAKIIALTLLD 416 (422)
T ss_pred CCCEEEECCCCccccCCCCceeEHHHH-HHHHHHHHHHHHH
Confidence 45557899965 43 334455444444 4666666666643
No 6
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.95 E-value=8.4e-27 Score=213.17 Aligned_cols=257 Identities=13% Similarity=0.132 Sum_probs=185.0
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCC-CceEEeeeeEEEEEEEEecCCC
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFH 80 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~i~v~G~~~H 80 (266)
+.|++.+..++++|.|+|++|||+|+. .|++.|++.+.++..++|++++.||+.. .+.++++|..+++|+++|+++|
T Consensus 136 ~~l~~~~~~~~~~v~~~~~~dEE~g~~--~g~~~l~~~~~~~~~~~d~~i~~ep~~~~~i~~~~~G~~~~~i~v~G~~~H 213 (427)
T PRK13013 136 EAFLAVYPDFAGSIEISGTADEESGGF--GGVAYLAEQGRFSPDRVQHVIIPEPLNKDRICLGHRGVWWAEVETRGRIAH 213 (427)
T ss_pred HHHHHhCCCCCccEEEEEEeccccCCh--hHHHHHHhcCCccccCCCEEEEecCCCCCceEEeeeeEEEEEEEEEccccc
Confidence 567777767889999999999999862 4888898887665434589999998763 5788999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCC-CccC-CcCCCceEeeEEEecCCCcc----------ceeCCeEEEE
Q 024502 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPK-EQVY-GFETPSTMKPTQWSYPGGGI----------NQIPGECTVS 148 (266)
Q Consensus 81 as~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~-~~~~-~~~~~~t~~~g~i~~gg~~~----------nviP~~a~~~ 148 (266)
++.|+.|+|||..+++++.++++...+....... .... ......+++++.|+ +|... |+||++|+++
T Consensus 214 ~~~p~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~~~~~~~~~~~n~IPd~a~~~ 292 (427)
T PRK13013 214 GSMPFLGDSAIRHMGAVLAEIEERLFPLLATRRTAMPVVPEGARQSTLNINSIH-GGEPEQDPDYTGLPAPCVADRCRIV 292 (427)
T ss_pred cCCCCcCcCHHHHHHHHHHHHHHHhhhhhhcccccCCCCCcccCCCceeeeEEe-CCCccccccccccccccCCceEEEE
Confidence 9999999999999999999997643211110000 0000 00124689999998 88776 9999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHhh---ccee-ee-ccCCCCccCCccc-----------cccCCcccccCCCCCccc
Q 024502 149 GDVRLTPFYNVTDVMKRLQEYVDDINE---NIEK-LD-TRGPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRD 212 (266)
Q Consensus 149 ~diR~~~~~~~~~v~~~i~~~i~~~~~---~~~~-~~-~~~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~ 212 (266)
+|+|+++.++.+++.++|++.+++++. .+++ +. ...+||..++++. +.+|.. .....+.|++
T Consensus 293 idiR~~p~~~~~~v~~~i~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~lv~~l~~a~~~~~g~~--~~~~~~~g~~ 370 (427)
T PRK13013 293 IDRRFLIEEDLDEVKAEITALLERLKRARPGFAYEIRDLFEVLPTMTDRDAPVVRSVAAAIERVLGRQ--ADYVVSPGTY 370 (427)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHhhCCCceeEEEEcccCCcccCCCCCHHHHHHHHHHHHhhCCC--CceeecCccC
Confidence 999999999999999999999987653 2222 22 2356777777651 224432 1123467889
Q ss_pred ccccccccc-cCceeccCccc-c-eeecchhhhhhhhhHHHHHHHHHHHHHhhh
Q 024502 213 DFRIFPLRW-QRHKIKFGRLK-C-IFYLSIYKFISNLFSVLNKSLAAVISRLQM 263 (266)
Q Consensus 213 D~~~~~~~~-~~~~v~~G~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (266)
|++++.+.. ..+.+.|||.. . .+--..|+-.+++......+...+..-+|-
T Consensus 371 D~~~~~~~g~~~~~v~fGPg~~~~aH~~nE~v~i~~l~~~~~~l~~~l~~~~~~ 424 (427)
T PRK13013 371 DQKHIDRIGKLKNCIAYGPGILDLAHQPDEWVGIADMVDSAKVMALVLADLLAG 424 (427)
T ss_pred CHHHHHhcCCCCCEEEECCCCccccCCCCceeEHHHHHHHHHHHHHHHHHHhcc
Confidence 999998753 34688999975 3 355578888777766554444333333343
No 7
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.95 E-value=1.4e-26 Score=209.57 Aligned_cols=238 Identities=20% Similarity=0.237 Sum_probs=176.4
Q ss_pred CceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCC-CceEEeeeeEEEEEEEEecCCCccCCCCCCCH
Q 024502 12 KSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFHSGLPHKAINP 90 (266)
Q Consensus 12 ~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~i~v~G~~~Has~P~~g~nA 90 (266)
+++|+|+|++|||+|+ .|++.+++++.+ ++|.++..+++.. .+.++++|..+++|+++|+++|++.|+.|.||
T Consensus 134 ~~~v~~~~~~~EE~g~---~G~~~~~~~~~~---~~d~~i~~~~~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nA 207 (394)
T PRK08651 134 DGNIELAIVPDEETGG---TGTGYLVEEGKV---TPDYVIVGEPSGLDNICIGHRGLVWGVVKVYGKQAHASTPWLGINA 207 (394)
T ss_pred CCCEEEEEecCccccc---hhHHHHHhccCC---CCCEEEEecCCCCCceEEecccEEEEEEEEEEeccccCCCccccCH
Confidence 7999999999999987 799999987653 3688999998875 68889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEE--EecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHH
Q 024502 91 LELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQ--WSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQE 168 (266)
Q Consensus 91 i~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~--i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~ 168 (266)
+.++++++.+|++...+...... .........++++|. ++ +|...|++|++|++.+|+|+++.++.+++.+++++
T Consensus 208 i~~~~~~i~~l~~~~~~~~~~~~--~~~~~~~~~~~~ig~~~i~-gG~~~nviP~~a~~~~diR~~~~~~~e~i~~~i~~ 284 (394)
T PRK08651 208 FEAAAKIAERLKSSLSTIKSKYE--YDDERGAKPTVTLGGPTVE-GGTKTNIVPGYCAFSIDRRLIPEETAEEVRDELEA 284 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhcccc--ccccccCCCceeecceeee-CCCCCCccCCEEEEEEEeeeCCCCCHHHHHHHHHH
Confidence 99999999999764322111100 000011235778888 88 99999999999999999999999999999999999
Q ss_pred HHHHHhhcc--ee-ee-ccCCCCccCCccc-----------cccCCcccccCCCCCcccccccccccccCceeccCccc-
Q 024502 169 YVDDINENI--EK-LD-TRGPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK- 232 (266)
Q Consensus 169 ~i~~~~~~~--~~-~~-~~~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~- 232 (266)
.+++.+... .+ +. ...+||..++++. +.+|.. ....++.|++|+++|... ..+.+.|||..
T Consensus 285 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~~~g~~--~~~~~~~g~tD~~~~~~~-gip~v~~Gpg~~ 361 (394)
T PRK08651 285 LLDEVAPELGIEVEFEITPFSEAFVTDPDSELVKALREAIREVLGVE--PKKTISLGGTDARFFGAK-GIPTVVYGPGEL 361 (394)
T ss_pred HHHHHhhccCCCeeEEEecccCCccCCCCCHHHHHHHHHHHHHhCCC--CceeeecCcccHHHHhhC-CCcEEEECCCCh
Confidence 998875432 11 22 3346777777651 224432 122457799999999854 45568889975
Q ss_pred ceeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 233 CIFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
...|..--...-.-+..+.+-+.++|.+|
T Consensus 362 ~~~H~~~E~i~~~~l~~~~~i~~~~i~~l 390 (394)
T PRK08651 362 ELAHAPDEYVEVKDVEKAAKVYEEVLKRL 390 (394)
T ss_pred HhcCCCCceeEHHHHHHHHHHHHHHHHHh
Confidence 33333333333444457777888887776
No 8
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.95 E-value=9e-27 Score=209.58 Aligned_cols=235 Identities=20% Similarity=0.279 Sum_probs=175.1
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCC-CCCceEEeeeeEEEEEEEEecCCC
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~i~v~G~~~H 80 (266)
+.|++.+.+++++|.|+|++|||.|+ .|++.+++++.+++ +|++++.+++ .+.+.++++|..+++|+++|+++|
T Consensus 118 ~~l~~~~~~~~~~i~~~~~~~EE~g~---~G~~~~~~~~~~~~--~d~~i~~~~~~~~~v~~~~~G~~~~~i~~~G~~~H 192 (375)
T TIGR01910 118 KAIREAGIKPNGNIILQSVVDEESGE---AGTLYLLQRGYFKD--ADGVLIPEPSGGDNIVIGHKGSIWFKLRVKGKQAH 192 (375)
T ss_pred HHHHHcCCCCCccEEEEEEcCcccCc---hhHHHHHHcCCCCC--CCEEEECCCCCCCceEEEecceEEEEEEEeeeecc
Confidence 45667776789999999999999987 79999999876542 5799999987 367788999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHH
Q 024502 81 SGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (266)
Q Consensus 81 as~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~ 160 (266)
++.|+.|.||+..+++++.+|.++......... ........+++++.|+ +|...|+||++|++.+|+|+.+.++.+
T Consensus 193 s~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~---~~~~~~~~t~~i~~i~-gG~~~nviP~~~~~~~diR~~~~~~~~ 268 (375)
T TIGR01910 193 ASFPQFGVNAIMKLAKLITELNELEEHIYARNS---YGFIPGPITFNPGVIK-GGDWVNSVPDYCEFSIDVRIIPEENLD 268 (375)
T ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHhhhccc---ccccCCCccccceeEE-CCCCcCcCCCEEEEEEEeeeCCCCCHH
Confidence 999999999999999999999876321111000 0001124689999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc--cee-ee-ccCCC-CccCCcc-----------ccccCCcccccCCCCCcccccccccccccCc
Q 024502 161 DVMKRLQEYVDDINEN--IEK-LD-TRGPV-SKYVLPD-----------ENIRGRHVLSLHYLTLGRDDFRIFPLRWQRH 224 (266)
Q Consensus 161 ~v~~~i~~~i~~~~~~--~~~-~~-~~~~p-~~~~~~~-----------~~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~ 224 (266)
++.++|++.+++.+.. +++ +. ...+| |...+++ .+.+|... ....+.|++|+++|.+. ..+
T Consensus 269 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~g~tD~~~~~~~-gip 345 (375)
T TIGR01910 269 EVKQIIEDVVKALSKSDGWLYENEPVVKWSGPNETPPDSRLVKALEAIIKKVRGIEP--EVLVSTGGTDARFLRKA-GIP 345 (375)
T ss_pred HHHHHHHHHHHHHhhcCcHHhhCCCeeeecCCcCCCCCCHHHHHHHHHHHHHhCCCC--eEeeeccchhHHHHHHc-CCc
Confidence 9999999999876532 221 21 11233 3444443 12344321 22457899999999864 355
Q ss_pred eeccCccc--ceeecchhhhhhhhhH
Q 024502 225 KIKFGRLK--CIFYLSIYKFISNLFS 248 (266)
Q Consensus 225 ~v~~G~~~--~~~~~~~~~~~~~~~~ 248 (266)
.+.|||.. ..+--..|+..+++..
T Consensus 346 ~v~~Gpg~~~~~H~~~E~v~~~~~~~ 371 (375)
T TIGR01910 346 SIVYGPGDLETAHQVNEYISIKNLVE 371 (375)
T ss_pred EEEECCCCccccCCCCceeEHHHHHH
Confidence 67899973 4555667777766654
No 9
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.95 E-value=6.4e-26 Score=203.94 Aligned_cols=245 Identities=20% Similarity=0.210 Sum_probs=176.9
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCC-----CceEEeeeeEEEEEEEEe
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~v~G 76 (266)
+.|++.+..++++|+|+|++|||.++. .|++.+++.....+.++|+++..||+.. .+.++++|..+++|+++|
T Consensus 112 ~~l~~~~~~~~~~i~~~~~~~EE~~~~--~G~~~~~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~g~~g~~~~~i~v~G 189 (375)
T PRK13009 112 ERFVAAHPDHKGSIAFLITSDEEGPAI--NGTVKVLEWLKARGEKIDYCIVGEPTSTERLGDVIKNGRRGSLTGKLTVKG 189 (375)
T ss_pred HHHHHhcCCCCceEEEEEEeecccccc--cCHHHHHHHHHHcCcCCCEEEEcCCCcccCCCCeEEEecceEEEEEEEEEe
Confidence 456666667889999999999998652 4899998754333456799999998743 256788999999999999
Q ss_pred cCCCccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCC-ccceeCCeEEEEEEEeCCC
Q 024502 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTP 155 (266)
Q Consensus 77 ~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~-~~nviP~~a~~~~diR~~~ 155 (266)
+++|++.|+.|.||+..+++++.+|+....+... ....+.+++++.|+ +|. ..|+||++|++.+|+|+++
T Consensus 190 ~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~~--------~~~~~~~~~i~~i~-~G~~~~nvip~~~~~~~diR~~~ 260 (375)
T PRK13009 190 VQGHVAYPHLADNPIHLAAPALAELAATEWDEGN--------EFFPPTSLQITNID-AGTGATNVIPGELEAQFNFRFST 260 (375)
T ss_pred cCcccCCCCcccCHHHHHHHHHHHHHhhhccCCC--------ccCCCceEEEEEEe-cCCCCCcccCCcEEEEEEEecCC
Confidence 9999999999999999999999999875322111 11235688999998 775 7899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcceeeeccCCCCccCCcc----------ccccCCcccccCCCCCcccccccccccccCce
Q 024502 156 FYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPD----------ENIRGRHVLSLHYLTLGRDDFRIFPLRWQRHK 225 (266)
Q Consensus 156 ~~~~~~v~~~i~~~i~~~~~~~~~~~~~~~p~~~~~~~----------~~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~ 225 (266)
.++.+++.++|++.+++...++++......+|...++. ++.+|.. .....+.|++|++++.+ ...+.
T Consensus 261 ~~~~e~i~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~a~~~~~g~~--~~~~~~~g~tda~~~~~-~g~p~ 337 (375)
T PRK13009 261 EHTAESLKARVEAILDKHGLDYTLEWTLSGEPFLTPPGKLVDAVVAAIEAVTGIT--PELSTSGGTSDARFIAD-YGAQV 337 (375)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEecCCCcccCCCcHHHHHHHHHHHHHhCCC--ceeeccCCCccHHHHHH-cCCCe
Confidence 99999999999999986543333211223444444332 1234432 12234677899999876 45678
Q ss_pred eccCccc-ceeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 226 IKFGRLK-CIFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 226 v~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
+.|||.. ..+--..|+..+++.. +.+-+++++.+|
T Consensus 338 v~~Gp~~~~~H~~~E~i~~~~l~~-~~~~~~~~~~~~ 373 (375)
T PRK13009 338 VEFGPVNATIHKVNECVSVADLEK-LTRIYERILERL 373 (375)
T ss_pred EEeccCcccCCCCCCcEEHHHHHH-HHHHHHHHHHHH
Confidence 8899987 3455666776666544 444455555544
No 10
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.95 E-value=5.6e-26 Score=205.00 Aligned_cols=245 Identities=16% Similarity=0.213 Sum_probs=180.8
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEEeeeeEEEEEEEEecCCCc
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~~Ha 81 (266)
+.|++. .++++|.|+|++|||.|+ .|++.|+++......++|+++..+|+...++++++|..+++|+++|+++|+
T Consensus 117 ~~l~~~--~~~~~i~~~~~~dEE~g~---~G~~~l~~~~~~~~~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~Hs 191 (385)
T PRK07522 117 PELAAA--PLRRPLHLAFSYDEEVGC---LGVPSMIARLPERGVKPAGCIVGEPTSMRPVVGHKGKAAYRCTVRGRAAHS 191 (385)
T ss_pred HHHHhC--CCCCCEEEEEEeccccCC---ccHHHHHHHhhhcCCCCCEEEEccCCCCeeeeeecceEEEEEEEEeecccc
Confidence 345554 467899999999999987 799999986433345678999999887778889999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhccCCC--CCCCCccCCcC-CCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCC
Q 024502 82 GLPHKAINPLELAMEALKVIQTRFYKDFP--PHPKEQVYGFE-TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (266)
Q Consensus 82 s~P~~g~nAi~~~a~~i~~l~~~~~~~~~--~~~~~~~~~~~-~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~ 158 (266)
+.|+.|.||+..+++++.+|+++..+... +.. ..+. +.++++++.|+ +|...|+||++|++.+|+|+++.++
T Consensus 192 ~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~----~~~~~~~~t~~i~~i~-gG~~~nviP~~a~~~~diR~~~~~~ 266 (385)
T PRK07522 192 SLAPQGVNAIEYAARLIAHLRDLADRLAAPGPFD----ALFDPPYSTLQTGTIQ-GGTALNIVPAECEFDFEFRNLPGDD 266 (385)
T ss_pred CCCccCcCHHHHHHHHHHHHHHHHHHHhhcCCCC----cCCCCCcceeEEeeee-cCccccccCCceEEEEEEccCCCCC
Confidence 99999999999999999999875322111 100 0111 12588999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-H-----hh--ccee-ee-ccCCCCccCCccc-------cccCCcccccCCCCCcccccccccccc
Q 024502 159 VTDVMKRLQEYVDD-I-----NE--NIEK-LD-TRGPVSKYVLPDE-------NIRGRHVLSLHYLTLGRDDFRIFPLRW 221 (266)
Q Consensus 159 ~~~v~~~i~~~i~~-~-----~~--~~~~-~~-~~~~p~~~~~~~~-------~~~g~~~~~~~~~~~gg~D~~~~~~~~ 221 (266)
.+++.++|++.+++ . .. ++++ ++ ...+||..++++. +..+.. ......+++|.++|. ..
T Consensus 267 ~~~i~~~i~~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~td~~~~~-~~ 342 (385)
T PRK07522 267 PEAILARIRAYAEAELLPEMRAVHPEAAIEFEPLSAYPGLDTAEDAAAARLVRALTGDN---DLRKVAYGTEAGLFQ-RA 342 (385)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhcCCCcEEEEeccCCCCCCCCCCcHHHHHHHHHhCCC---CcceEeeecchHHhc-cC
Confidence 99999999999977 1 11 2222 22 3457888777662 233322 112345789999997 45
Q ss_pred cCceeccCccc--ceeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 222 QRHKIKFGRLK--CIFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 222 ~~~~v~~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
..+.+.|||.. ..+.-..|+.++++.. +..-+.+++.+|
T Consensus 343 gip~v~~Gpg~~~~~H~~~E~i~i~~l~~-~~~~~~~~~~~~ 383 (385)
T PRK07522 343 GIPTVVCGPGSIEQAHKPDEFVELAQLAA-CEAFLRRLLASL 383 (385)
T ss_pred CCCEEEECCCChhhCCCCCccccHHHHHH-HHHHHHHHHHHH
Confidence 67788999975 4455677777766554 444555555554
No 11
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=99.94 E-value=1.3e-25 Score=201.69 Aligned_cols=244 Identities=18% Similarity=0.171 Sum_probs=174.3
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCC-----CceEEeeeeEEEEEEEEe
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~v~G 76 (266)
+.|++.+..++++|+|+|++|||.++. .|++.+++........+|+++..||+.. .+.++.+|..+++++++|
T Consensus 109 ~~l~~~~~~~~~~v~~~~~~dEE~~~~--~G~~~~~~~~~~~~~~~d~~i~~ep~~~~~~~~~i~~~~~G~~~~~v~v~G 186 (370)
T TIGR01246 109 ERFVKKNPDHKGSISLLITSDEEGTAI--DGTKKVVETLMARDELIDYCIVGEPSSVKKLGDVIKNGRRGSITGNLTIKG 186 (370)
T ss_pred HHHHHhcCCCCCcEEEEEEeccccCCC--cCHHHHHHHHHhcCCCCCEEEEcCCCCcccCCceEEEeeeEEEEEEEEEEc
Confidence 345566667889999999999998752 4999998753223346799999998642 356789999999999999
Q ss_pred cCCCccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCC-ccceeCCeEEEEEEEeCCC
Q 024502 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTP 155 (266)
Q Consensus 77 ~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~-~~nviP~~a~~~~diR~~~ 155 (266)
+++|++.|+.|+||+..++++++.|.....+.. ...+.+.+++++.|+ +|. ..|+||++|++.+|+|+++
T Consensus 187 ~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~--------~~~~~~~t~~i~~i~-~g~~~~nvvP~~~~~~~diR~~~ 257 (370)
T TIGR01246 187 IQGHVAYPHLANNPIHKAAPALAELTAIKWDEG--------NEFFPPTSLQITNIH-AGTGANNVIPGELYVQFNLRFST 257 (370)
T ss_pred cCcccCCcccCCCHHHHHHHHHHHHhhhhhccC--------CccCCCCceEeeeee-cCCCCCcccCCceEEEEEEecCC
Confidence 999999999999999999999999876422110 112235689999998 775 6799999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhcceeeeccCCCCccCC-cc-----c----cccCCcccccCCCCCcccccccccccccCce
Q 024502 156 FYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVL-PD-----E----NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHK 225 (266)
Q Consensus 156 ~~~~~~v~~~i~~~i~~~~~~~~~~~~~~~p~~~~~-~~-----~----~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~ 225 (266)
.++.+++.+.|++.++.....+++......+|...+ .. . +.+|.. .....+.|++|++++.. ...+.
T Consensus 258 ~~~~~~v~~~i~~~~~~~~~~~~v~~~~~~~p~~~~~~~~~~~~~~a~~~~~g~~--~~~~~~~g~~d~~~~~~-~g~p~ 334 (370)
T TIGR01246 258 EVSDEILKQRVEAILDQHGLDYDLEWSLSGEPFLTNDGKLIDKAREAIEETNGIK--PELSTGGGTSDGRFIAL-MGAEV 334 (370)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEEecCCcceeCCCCHHHHHHHHHHHHHhCCC--CceecCCCCchHHHHHH-cCCCE
Confidence 999999999999998765333332112223333332 22 1 224432 12245678899999875 45778
Q ss_pred eccCccc-ceeecchhhhhhhhhHHHHHHHHHHHHH
Q 024502 226 IKFGRLK-CIFYLSIYKFISNLFSVLNKSLAAVISR 260 (266)
Q Consensus 226 v~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
+.|||.. ..+-...|+..+++... ..-+++++.+
T Consensus 335 ~~~Gp~~~~~H~~~E~i~i~~l~~~-~~~~~~~l~~ 369 (370)
T TIGR01246 335 VEFGPVNATIHKVNECVSIEDLEKL-SDVYQDLLEN 369 (370)
T ss_pred EEecCCcccCCCCCceeEHHHHHHH-HHHHHHHHHh
Confidence 8999987 55666777777666543 3334444443
No 12
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=99.94 E-value=6.7e-26 Score=203.08 Aligned_cols=213 Identities=20% Similarity=0.296 Sum_probs=157.1
Q ss_pred hhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCC--------ceEEeeeeEEEEEEE
Q 024502 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQ--------PCIGTGGMIPWKLHV 74 (266)
Q Consensus 3 ~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~--------i~~~~~g~~~~~i~v 74 (266)
.|++.+..++++|.|+|++|||.+ .|++.+++++.+++ +|.+++.|+.+.. ...+++|..+++|++
T Consensus 104 ~l~~~~~~~~~~i~~~~~~dEE~~----~G~~~~~~~~~~~~--~d~~i~~e~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 177 (363)
T TIGR01891 104 LLKKLADLLEGTVRLIFQPAEEGG----GGATKMIEDGVLDD--VDAILGLHPDPSIPAGTVGLRPGTIMAAADKFEVTI 177 (363)
T ss_pred HHHhchhhCCceEEEEEeecCcCc----chHHHHHHCCCCCC--cCEEEEECCCCCCCCeEEEECCCcceeecceEEEEE
Confidence 455555667899999999999995 69999998876554 3789999886421 123467888999999
Q ss_pred EecCCCccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCC
Q 024502 75 TGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLT 154 (266)
Q Consensus 75 ~G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~ 154 (266)
+|+++|++.|+.|+||+.++++++.+++++..+...+. ...++++|.|+ +|...|+||++|++++|+|++
T Consensus 178 ~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~---------~~~~~~i~~i~-gG~~~nvvP~~~~~~~diR~~ 247 (363)
T TIGR01891 178 HGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDPS---------RPAVVTVGIIE-AGGAPNVIPDKASMSGTVRSL 247 (363)
T ss_pred EeecccccCcccccCHHHHHHHHHHHHHHHhhccCCCC---------CCcEEEEEEEE-cCCCCcEECCeeEEEEEEEeC
Confidence 99999999999999999999999999987532222211 14579999999 999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc--cee-ee-ccCCCCccCCcc---------ccccCCccc-ccCCCCCccccccccccc
Q 024502 155 PFYNVTDVMKRLQEYVDDINEN--IEK-LD-TRGPVSKYVLPD---------ENIRGRHVL-SLHYLTLGRDDFRIFPLR 220 (266)
Q Consensus 155 ~~~~~~~v~~~i~~~i~~~~~~--~~~-~~-~~~~p~~~~~~~---------~~~~g~~~~-~~~~~~~gg~D~~~~~~~ 220 (266)
+.++.+++.+.|++.+++.+.. +++ +. ...+|+...++. ++.+|...+ ..+..+.||+|+++|++.
T Consensus 248 ~~~~~e~~~~~i~~~~~~~~~~~~~~ve~~~~~~~p~~~~~~~l~~~l~~a~~~~~g~~~~~~~~~~~~gg~Da~~~~~~ 327 (363)
T TIGR01891 248 DPEVRDQIIDRIERIVEGAAAMYGAKVELNYDRGLPAVTNDPALTQILKEVARHVVGPENVAEDPEVTMGSEDFAYYSQK 327 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEecCCCCccCCHHHHHHHHHHHHHhcCccceeccCCCCccccCHHHHHHh
Confidence 9999999999999999886532 332 22 234555544433 123443222 122357899999999987
Q ss_pred ccCceeccCccc
Q 024502 221 WQRHKIKFGRLK 232 (266)
Q Consensus 221 ~~~~~v~~G~~~ 232 (266)
+| .+..|-|..
T Consensus 328 ~P-~~~~f~~~~ 338 (363)
T TIGR01891 328 VP-GAFFFLGIG 338 (363)
T ss_pred CC-eeEEEEecC
Confidence 64 334444433
No 13
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.94 E-value=7.3e-25 Score=197.64 Aligned_cols=238 Identities=16% Similarity=0.139 Sum_probs=176.0
Q ss_pred CCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEEeeeeEEEEEEEEecCCCccCCCCCCC
Q 024502 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAIN 89 (266)
Q Consensus 10 ~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~~Has~P~~g~n 89 (266)
.++++|.|+|++|||+|+ .|++.+++.+. +++|+++..||+...++++++|..+++|+++|+++|++.|+.|.|
T Consensus 130 ~~~~~i~~~~~~~EE~g~---~G~~~~~~~~~---~~~d~~i~~ep~~~~~~~~~~G~~~~~i~v~G~~~H~~~p~~g~n 203 (383)
T PRK05111 130 KLKKPLYILATADEETSM---AGARAFAEATA---IRPDCAIIGEPTSLKPVRAHKGHMSEAIRITGQSGHSSDPALGVN 203 (383)
T ss_pred CCCCCeEEEEEeccccCc---ccHHHHHhcCC---CCCCEEEEcCCCCCceeecccceEEEEEEEEeechhccCCccCcC
Confidence 467899999999999987 79999998764 345889999988766778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHH
Q 024502 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (266)
Q Consensus 90 Ai~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~ 169 (266)
||..+++++.+++.+......... ..... ....+++++.|+ +|...|+||++|++.+|+|+.+.++.+++.++|++.
T Consensus 204 ai~~~~~~i~~l~~~~~~~~~~~~-~~~~~-~~~~t~~i~~i~-gg~~~NvVP~~~~~~~diR~~p~~~~~~v~~~i~~~ 280 (383)
T PRK05111 204 AIELMHDVIGELLQLRDELQERYH-NPAFT-VPYPTLNLGHIH-GGDAPNRICGCCELHFDIRPLPGMTLEDLRGLLREA 280 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC-CccCC-CCCCceeEeeee-cCCcCcccCCceEEEEEEecCCCCCHHHHHHHHHHH
Confidence 999999999998765211000000 00111 124579999999 999999999999999999999999999999999999
Q ss_pred HHHHhhcc--ee-ee--ccCCCCccCCccc-------cccCCcccccCCCCCcccccccccccccCceeccCccc-ceee
Q 024502 170 VDDINENI--EK-LD--TRGPVSKYVLPDE-------NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK-CIFY 236 (266)
Q Consensus 170 i~~~~~~~--~~-~~--~~~~p~~~~~~~~-------~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~-~~~~ 236 (266)
++++.... .+ +. ....|+...+++. +++|.. .....+++|..++. +...+.+.|||.. ...|
T Consensus 281 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~----~~~~~~~~Da~~~~-~~g~p~v~~G~g~~~~~H 355 (383)
T PRK05111 281 LAPVSERWPGRITVAPLHPPIPGYECPADHQLVRVVEKLLGHK----AEVVNYCTEAPFIQ-QLGCPTLVLGPGSIEQAH 355 (383)
T ss_pred HHHHHhhCCCeEEEeccccCCCCcCCCCCCHHHHHHHHHhCCC----CceeeeeccHHHHH-hcCCCEEEECCCchHhCc
Confidence 98775432 21 22 1245665555542 233322 12345789988775 5567778899975 3334
Q ss_pred c-chhhhhhhhhHHHHHHHHHHHHHhh
Q 024502 237 L-SIYKFISNLFSVLNKSLAAVISRLQ 262 (266)
Q Consensus 237 ~-~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (266)
. ..|+..+++ ..+..-+++++.++.
T Consensus 356 ~~~E~v~~~~l-~~~~~i~~~~~~~~~ 381 (383)
T PRK05111 356 QPDEYLELSFI-KPTRELLRQLIHHFC 381 (383)
T ss_pred CCCCcccHHHH-HHHHHHHHHHHHHHh
Confidence 4 555555555 577888888888763
No 14
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.94 E-value=4.9e-25 Score=197.33 Aligned_cols=230 Identities=17% Similarity=0.183 Sum_probs=171.8
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEEeeeeEEEEEEEEecCCCc
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~~Ha 81 (266)
++|++. .++++|.|+|++|||+|+ .|++.+++++. +++|+++..+|+...+..+++|..+++|+++|+++|+
T Consensus 111 ~~l~~~--~~~~~v~~~~~~~EE~g~---~G~~~~~~~~~---~~~d~~i~~ep~~~~~~~~~~G~~~~~v~v~G~~~Hs 182 (364)
T TIGR01892 111 PDLAAE--QLKKPLHLALTADEEVGC---TGAPKMIEAGA---GRPRHAIIGEPTRLIPVRAHKGYASAEVTVRGRSGHS 182 (364)
T ss_pred HHHHhc--CcCCCEEEEEEeccccCC---cCHHHHHHhcC---CCCCEEEECCCCCceeEEeeceEEEEEEEEEcccccc
Confidence 345543 468899999999999987 79999998865 3568999999887666678999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcC-CCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHH
Q 024502 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVT 160 (266)
Q Consensus 82 s~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~ 160 (266)
+.|+.|.||+..+++++.+|.++... ..... ....+. ..++++++.|+ +|...|+||++|++.+|+|+++.++.+
T Consensus 183 ~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~~~--~~~~~~~~~~~~~i~~i~-gg~~~nviP~~~~~~~diR~~p~~~~~ 258 (364)
T TIGR01892 183 SYPDSGVNAIFRAGRFLQRLVHLADT-LLRED--LDEGFTPPYTTLNIGVIQ-GGKAVNIIPGACEFVFEWRPIPGMDPE 258 (364)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHHH-hccCC--CCccCCCCCceEEEeeee-cCCCCcccCCeEEEEEEeecCCCCCHH
Confidence 99999999999999999999865311 11000 000111 13689999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh---ccee-ee-ccCCCCccCCccc-------cccCCcccccCCCCCcccccccccccccCceecc
Q 024502 161 DVMKRLQEYVDDINE---NIEK-LD-TRGPVSKYVLPDE-------NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKF 228 (266)
Q Consensus 161 ~v~~~i~~~i~~~~~---~~~~-~~-~~~~p~~~~~~~~-------~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~ 228 (266)
++.++|++.++..+. ++++ ++ ...+|+...+++. ++.+.. +....+++|+++|.+ ...+.+.|
T Consensus 259 ~v~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~tD~~~~~~-~gip~v~~ 333 (364)
T TIGR01892 259 ELLQLLETIAQALVRDEPGFEVQIEVVSTDPGVNTEPDAELVAFLEELSGNA----PEVVSYGTEAPQFQE-LGAEAVVC 333 (364)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEEccCCCCcCCCCCCHHHHHHHHHhCCC----CceecccccHHHHHh-CCCcEEEE
Confidence 999999999987642 2332 22 3356777666652 333331 123456899999875 45667889
Q ss_pred Cccc--ceeecchhhhhhhhhH
Q 024502 229 GRLK--CIFYLSIYKFISNLFS 248 (266)
Q Consensus 229 G~~~--~~~~~~~~~~~~~~~~ 248 (266)
||.. ..+--+.|+-.+++..
T Consensus 334 Gpg~~~~~H~~~E~i~i~~l~~ 355 (364)
T TIGR01892 334 GPGDIRQAHQPDEYVEIEDLVR 355 (364)
T ss_pred CCCChHhCCCCCceeeHHHHHH
Confidence 9876 3455666766666544
No 15
>PRK07338 hypothetical protein; Provisional
Probab=99.94 E-value=5e-25 Score=199.97 Aligned_cols=236 Identities=15% Similarity=0.072 Sum_probs=178.2
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCC--CCceEEeeeeEEEEEEEEecCC
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~i~v~G~~~ 79 (266)
+.|++.+..++++|.|+|++|||.|+ .|++.+++++. .+.++++..||+. +.+..+.+|..+++|+++|+++
T Consensus 142 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~~~~~~---~~~~~~i~~ep~~~~~~v~~~~kG~~~~~v~v~G~~a 215 (402)
T PRK07338 142 LAFERSPLADKLGYDVLINPDEEIGS---PASAPLLAELA---RGKHAALTYEPALPDGTLAGARKGSGNFTIVVTGRAA 215 (402)
T ss_pred HHHHhcCCCCCCCEEEEEECCcccCC---hhhHHHHHHHh---ccCcEEEEecCCCCCCcEEeecceeEEEEEEEEeEcc
Confidence 56667776778999999999999987 79999988753 2357889999864 4567789999999999999999
Q ss_pred CccC-CCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCC
Q 024502 80 HSGL-PHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (266)
Q Consensus 80 Has~-P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~ 158 (266)
|++. |+.|.||+..+++++.+|+++.. .. . ..+++++.|+ +|...|+||++|++.+|+|+.+.++
T Consensus 216 Hs~~~p~~g~nAi~~~~~~i~~l~~l~~-~~---~---------~~t~~vg~i~-gG~~~nvVP~~a~~~~d~R~~~~~~ 281 (402)
T PRK07338 216 HAGRAFDEGRNAIVAAAELALALHALNG-QR---D---------GVTVNVAKID-GGGPLNVVPDNAVLRFNIRPPTPED 281 (402)
T ss_pred cCCCCcccCccHHHHHHHHHHHHHhhhc-cC---C---------CcEEEEEEEe-cCCCCceeccccEEEEEeccCCHHH
Confidence 9995 89999999999999999987532 11 1 4689999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc--cee-ee-ccCCCCccCCcc--------c---cccCCcccccCCCCCcccccccccccccC
Q 024502 159 VTDVMKRLQEYVDDINEN--IEK-LD-TRGPVSKYVLPD--------E---NIRGRHVLSLHYLTLGRDDFRIFPLRWQR 223 (266)
Q Consensus 159 ~~~v~~~i~~~i~~~~~~--~~~-~~-~~~~p~~~~~~~--------~---~~~g~~~~~~~~~~~gg~D~~~~~~~~~~ 223 (266)
.+++.++|++.+++.+.. +++ +. ...+||...+++ + +.+|.. .....+.|++|+++|.. ...
T Consensus 282 ~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~g~~--~~~~~~~g~tDa~~~~~-~gi 358 (402)
T PRK07338 282 AAWAEAELKKLIAQVNQRHGVSLHLHGGFGRPPKPIDAAQQRLFEAVQACGAALGLT--IDWKDSGGVCDGNNLAA-AGL 358 (402)
T ss_pred HHHHHHHHHHHHhccccCCCeEEEEEccccCCCCCCCcchHHHHHHHHHHHHHcCCC--cccccCCccchHHHHhh-cCC
Confidence 999999999999876422 332 22 224566554433 1 123322 12245788999999975 445
Q ss_pred cee-ccCccc-ceeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 224 HKI-KFGRLK-CIFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 224 ~~v-~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
+.+ .|||.+ ..+.-..|+..+++...-. -+++++.++
T Consensus 359 P~v~~~Gpg~~~~H~~~E~v~i~~l~~~~~-~~~~~l~~~ 397 (402)
T PRK07338 359 PVVDTLGVRGGNIHSEDEFVILDSLVERAQ-LSALILMRL 397 (402)
T ss_pred CeEeccCCCCCCCCCccceEehhhHHHHHH-HHHHHHHHH
Confidence 666 789977 4566788888888766544 444554443
No 16
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.93 E-value=4.9e-25 Score=200.50 Aligned_cols=238 Identities=21% Similarity=0.160 Sum_probs=176.6
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCC--CCceEEeeeeEEEEEEEEecCC
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~i~v~G~~~ 79 (266)
+.|++.+.+++++|.|+|++|||.|+ .|++.++++.. . ++|++|+.||+. +.+.++++|..+++|+++|+++
T Consensus 149 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~G~~~~~~~~~-~--~~d~~i~~ep~~~~~~v~~~~~G~~~~~v~v~G~~~ 222 (410)
T PRK06133 149 KILQQLGFKDYGTLTVLFNPDEETGS---PGSRELIAELA-A--QHDVVFSCEPGRAKDALTLATSGIATALLEVKGKAS 222 (410)
T ss_pred HHHHHcCCCCCCCEEEEEECCcccCC---ccHHHHHHHHh-c--cCCEEEEeCCCCCCCCEEEeccceEEEEEEEEeecc
Confidence 45667776778999999999999987 79999997642 2 458999999876 4678899999999999999999
Q ss_pred Ccc-CCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCC
Q 024502 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (266)
Q Consensus 80 Has-~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~ 158 (266)
|++ .|+.|.||+..+++++..++++.. +.. ..+++++.++ +|...|+||++|++.+|+|+.+.++
T Consensus 223 Hsg~~p~~g~nAi~~~~~~i~~l~~~~~----~~~---------~~t~~~~~i~-gG~~~nvIP~~~~~~~diR~~~~~~ 288 (410)
T PRK06133 223 HAGAAPELGRNALYELAHQLLQLRDLGD----PAK---------GTTLNWTVAK-AGTNRNVIPASASAQADVRYLDPAE 288 (410)
T ss_pred ccCCCcccCcCHHHHHHHHHHHHHhccC----CCC---------CeEEEeeEEE-CCCCCceeCCccEEEEEEEECCHHH
Confidence 985 799999999999999999877531 111 3678999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-hccee-ee-ccCCCCccCCccc--------cccCCccc-cc--CCCCCccccccccccc-ccC
Q 024502 159 VTDVMKRLQEYVDDIN-ENIEK-LD-TRGPVSKYVLPDE--------NIRGRHVL-SL--HYLTLGRDDFRIFPLR-WQR 223 (266)
Q Consensus 159 ~~~v~~~i~~~i~~~~-~~~~~-~~-~~~~p~~~~~~~~--------~~~g~~~~-~~--~~~~~gg~D~~~~~~~-~~~ 223 (266)
.+++.++|++.+++.. .++++ ++ ...+||..++++. +.++.... .. ...+.|++|+++|... +|.
T Consensus 289 ~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~tDa~~~~~~gip~ 368 (410)
T PRK06133 289 FDRLEADLQEKVKNKLVPDTEVTLRFERGRPPLEANAASRALAEHAQGIYGELGRRLEPIDMGTGGGTDAAFAAGSGKAA 368 (410)
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEEeccccCCcccCcchHHHHHHHHHHHHHcCCCccccccCCCCCchHHHHHhcCCCc
Confidence 9999999999998721 12222 22 3357777766641 22221111 11 1347899999999865 334
Q ss_pred ceeccCccc-ceeecchhhhhhhhhHHHHHHHHHHHHH
Q 024502 224 HKIKFGRLK-CIFYLSIYKFISNLFSVLNKSLAAVISR 260 (266)
Q Consensus 224 ~~v~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
....|||.+ ..+--..|+..+++..... -+.+++..
T Consensus 369 v~~g~G~~~~~aH~~nE~i~i~~~~~~~~-~~~~~~~~ 405 (410)
T PRK06133 369 VLEGFGLVGFGAHSNDEYIELNSIVPRLY-LLTRMIME 405 (410)
T ss_pred eEecccCCCCCCCCCCcEEEcccHHHHHH-HHHHHHHH
Confidence 444588866 3566677777777665443 34444433
No 17
>PRK08737 acetylornithine deacetylase; Provisional
Probab=99.93 E-value=1e-24 Score=195.25 Aligned_cols=228 Identities=11% Similarity=0.068 Sum_probs=164.3
Q ss_pred CCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEEeeeeEEEEEEEEecCCCccCC-CCCCC
Q 024502 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLP-HKAIN 89 (266)
Q Consensus 11 ~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~~Has~P-~~g~n 89 (266)
++++|.|+|++|||+|+. .|++.+++.+. ++|++++.||+...++++++|..+++|+++|+++|+|.| +.|+|
T Consensus 117 ~~~~v~~~~~~dEE~g~~--~g~~~~~~~~~----~~~~~iv~Ept~~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~N 190 (364)
T PRK08737 117 GDGDAAFLFSSDEEANDP--RCVAAFLARGI----PYEAVLVAEPTMSEAVLAHRGISSVLMRFAGRAGHASGKQDPSAS 190 (364)
T ss_pred cCCCEEEEEEcccccCch--hhHHHHHHhCC----CCCEEEEcCCCCceeEEecceeEEEEEEEEeeccccCCCcccCCC
Confidence 468999999999999862 48889988753 468999999998888899999999999999999999998 68999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHH
Q 024502 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (266)
Q Consensus 90 Ai~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~ 169 (266)
||..+++++.++.+.......+. .......++++|.|+ ||...|+||++|++++|+|+.+.++.+++.++|++.
T Consensus 191 AI~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~t~~vg~i~-GG~~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~ 264 (364)
T PRK08737 191 ALHQAMRWGGQALDHVESLAHAR-----FGGLTGLRFNIGRVE-GGIKANMIAPAAELRFGFRPLPSMDVDGLLATFAGF 264 (364)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc-----cCCCCCCceEEeeEe-cCCCCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHH
Confidence 99999999988654321111110 000113589999999 999999999999999999999999999999999877
Q ss_pred HHHHhhccee-eeccCCCCccCCcc-------ccccCCcccccCCCCCcccccccccccccCceeccCccc--ceeecch
Q 024502 170 VDDINENIEK-LDTRGPVSKYVLPD-------ENIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK--CIFYLSI 239 (266)
Q Consensus 170 i~~~~~~~~~-~~~~~~p~~~~~~~-------~~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~--~~~~~~~ 239 (266)
++.....++. +....+|+...+++ ..+.............+++|+++|.+ ...+.|.|||.. ..+....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tDa~~~~~-~Gip~v~~GpG~~~~aHt~dE 343 (364)
T PRK08737 265 AEPAAATFEETFRGPSLPSGDIARAEERRLAARDVADALDLPIGNAVDFWTEASLFSA-AGYTALVYGPGDIAQAHTADE 343 (364)
T ss_pred HHHcCCceEEEeccCCCCCcccCcchHHHHHHHHHHhhhcCCCCceeccccCHHHHHH-cCCCEEEECCCChhhccCCCc
Confidence 7653222221 11223444433332 01111101111123456899999974 456788899985 4577788
Q ss_pred hhhhhhhhHHHH
Q 024502 240 YKFISNLFSVLN 251 (266)
Q Consensus 240 ~~~~~~~~~~~~ 251 (266)
|+..+++...-.
T Consensus 344 ~i~i~~l~~~~~ 355 (364)
T PRK08737 344 FVTLDQLQRYAE 355 (364)
T ss_pred ceeHHHHHHHHH
Confidence 888887765443
No 18
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.93 E-value=6.4e-25 Score=199.96 Aligned_cols=242 Identities=17% Similarity=0.123 Sum_probs=171.5
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCC-----CCCCchHHHHHHccc--------------------cCCCCCCcEEEE--e
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDALVKDGL--------------------LNKLKGGPLYWI--D 54 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g-----~~~~~Ga~~~i~~g~--------------------~~~~~~d~~i~~--e 54 (266)
+.|++.+..++++|.|+|++|||.| + .|++.+++... ..++++|++++. |
T Consensus 105 ~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~e 181 (413)
T PRK09290 105 RTLNERGIRPRRPIEVVAFTNEEGSRFGPAM---LGSRVFTGALTPEDALALRDADGVSFAEALAAIGYDGDEAVGAARA 181 (413)
T ss_pred HHHHHcCCCCCCCeEEEEEcCCccccccCcc---ccHHHHHcccCHHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 5677777778999999999999984 3 57887764321 123556666654 3
Q ss_pred CC-------------------C--CCceEEeeeeEEEEEEEEecCCCcc-CC-CCCCCHHHHHHHHHHHHHHhhccCCCC
Q 024502 55 TA-------------------D--KQPCIGTGGMIPWKLHVTGKLFHSG-LP-HKAINPLELAMEALKVIQTRFYKDFPP 111 (266)
Q Consensus 55 ~~-------------------~--~~i~~~~~g~~~~~i~v~G~~~Has-~P-~~g~nAi~~~a~~i~~l~~~~~~~~~~ 111 (266)
|+ + ..+.++++|..+++|+++|+++|++ .| +.|.|||..+++++.+|+.+..+. .+
T Consensus 182 pt~~~~~~~~~~~~~~~~e~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~-~~ 260 (413)
T PRK09290 182 RRDIKAFVELHIEQGPVLEAEGLPIGVVTGIVGQRRYRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAAH-GP 260 (413)
T ss_pred CCCccEEEEEEeccCHHHHHCCCcEEEEeeeeccEEEEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHhc-CC
Confidence 33 2 1356789999999999999999988 68 588999999999999998754222 11
Q ss_pred CCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cee-ee-ccCCCC
Q 024502 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IEK-LD-TRGPVS 187 (266)
Q Consensus 112 ~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~--~~~-~~-~~~~p~ 187 (266)
+.+++++.++.++...|+||++|++.+|+|+++.++.+++.++|++.++..... +++ +. ...+||
T Consensus 261 -----------~~~~~~g~i~~g~~~~NvIP~~a~~~~diR~~p~e~~e~v~~~i~~~~~~~~~~~~~~~e~~~~~~~~~ 329 (413)
T PRK09290 261 -----------DLVATVGRLEVKPNSVNVIPGEVTFTLDIRHPDDAVLDALVAELRAAAEAIAARRGVEVEIELISRRPP 329 (413)
T ss_pred -----------CeEEEEEEEEEcCCCCeEECCEEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCC
Confidence 357899999833478999999999999999999999999999999999876532 322 22 234666
Q ss_pred ccCCcc-----c---cccCCcccccCCCCCcccccccccccccCceeccCccc-ceeecchhhhhhhhhHHHHHHHHHHH
Q 024502 188 KYVLPD-----E---NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK-CIFYLSIYKFISNLFSVLNKSLAAVI 258 (266)
Q Consensus 188 ~~~~~~-----~---~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (266)
..+++. . +..|.. ....++.|++|+++|...+|. .+.|||.. ...|..-....-+.+..+..-+++++
T Consensus 330 ~~~d~~lv~~l~~a~~~~g~~--~~~~~~~g~tDa~~~~~~iP~-~~~~gp~~~~~~H~~dE~v~i~~l~~~~~v~~~~l 406 (413)
T PRK09290 330 VPFDPGLVAALEEAAERLGLS--YRRLPSGAGHDAQILAAVVPT-AMIFVPSVGGISHNPAEFTSPEDCAAGANVLLHAL 406 (413)
T ss_pred ccCCHHHHHHHHHHHHHcCCC--ccccCCccchHHHHHhccCCE-EEEEeccCCCCCCCccccCCHHHHHHHHHHHHHHH
Confidence 665544 1 112322 122457899999999765442 46688865 33444434444445567777788887
Q ss_pred HHh
Q 024502 259 SRL 261 (266)
Q Consensus 259 ~~~ 261 (266)
.++
T Consensus 407 ~~l 409 (413)
T PRK09290 407 LEL 409 (413)
T ss_pred HHH
Confidence 765
No 19
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.93 E-value=1.1e-24 Score=198.43 Aligned_cols=242 Identities=14% Similarity=0.113 Sum_probs=169.0
Q ss_pred ChhhhcccCCCCceEEEEEEcCCCCC-----CCCCchHHHHHHccccC--------------------CCC---------
Q 024502 1 MRKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDALVKDGLLN--------------------KLK--------- 46 (266)
Q Consensus 1 ~k~L~~~~~~~~~~v~~if~~dEE~g-----~~~~~Ga~~~i~~g~~~--------------------~~~--------- 46 (266)
+++|++.+..++++|.|+|++|||++ + .|+..+.+....+ +..
T Consensus 107 ~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (412)
T PRK12893 107 VRTLNDAGIRTRRPIEVVSWTNEEGARFAPAM---LGSGVFTGALPLDDALARRDADGITLGEALARIGYRGTARVGRRA 183 (412)
T ss_pred HHHHHHcCCCCCCCeEEEEEcccccccccccc---ccHHHHhCcCChHHHHhccCCCCCCHHHHHHHcCCCcccccccCC
Confidence 35677777788999999999999986 4 5787776432100 011
Q ss_pred CCcEEEEeCCC----------CCceEEeeeeEEEEEEEEecCCCccC-CC-CCCCHHHHHHHHHHHHHHhhccCCCCCCC
Q 024502 47 GGPLYWIDTAD----------KQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPHPK 114 (266)
Q Consensus 47 ~d~~i~~e~~~----------~~i~~~~~g~~~~~i~v~G~~~Has~-P~-~g~nAi~~~a~~i~~l~~~~~~~~~~~~~ 114 (266)
.|..+..|... ..++++++|..+++|+++|+++|++. |+ .|+|||.++++++.+|+++..+. .+
T Consensus 184 ~~~~~~~~~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~~~-~~--- 259 (412)
T PRK12893 184 VDAYLELHIEQGPVLEAEGLPIGVVTGIQGIRWLEVTVEGQAAHAGTTPMAMRRDALVAAARIILAVERIAAAL-AP--- 259 (412)
T ss_pred ccEEEEEEeccCHHHHHCCCcEEEEeeecccEEEEEEEEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHHhc-CC---
Confidence 23344444322 23567899999999999999999885 84 79999999999999998764322 21
Q ss_pred CccCCcCCCceEeeEEEecC-CCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cee-ee-ccCCCCcc
Q 024502 115 EQVYGFETPSTMKPTQWSYP-GGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IEK-LD-TRGPVSKY 189 (266)
Q Consensus 115 ~~~~~~~~~~t~~~g~i~~g-g~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~--~~~-~~-~~~~p~~~ 189 (266)
..++++|.++ + ++..|+||++|++++|+|+++.++.+++.++|++.++..... +++ +. ...+||..
T Consensus 260 --------~~~~~vg~i~-ggg~~~NvVP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~ 330 (412)
T PRK12893 260 --------DGVATVGRLR-VEPNSRNVIPGKVVFTVDIRHPDDARLDAMEAALRAACAKIAAARGVQVTVETVWDFPPVP 330 (412)
T ss_pred --------CceEEEEEEE-eeCCCceEECCeeEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCCcC
Confidence 3578999998 6 579999999999999999999999999999999999886543 222 22 23567777
Q ss_pred CCcc-----c---cccCCcccccCCCCCcccccccccccccCceeccCccc-ceeecchhhhhhhhhHHHHHHHHHHHHH
Q 024502 190 VLPD-----E---NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK-CIFYLSIYKFISNLFSVLNKSLAAVISR 260 (266)
Q Consensus 190 ~~~~-----~---~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
+++. . +.+|... ...++.|++|+++|.+.. +..+.|||.. ...|..-....-+-+..+..-+++++.+
T Consensus 331 ~d~~l~~~l~~~~~~~g~~~--~~~~~~g~tD~~~~~~~~-p~~v~~gp~~~~~~Hs~dE~v~i~~l~~~~~i~~~ll~~ 407 (412)
T PRK12893 331 FDPALVALVEAAAEALGLSH--MRMVSGAGHDAMFLARVA-PAAMIFVPCRGGISHNEAEDTEPADLAAGANVLLHAVLE 407 (412)
T ss_pred CCHHHHHHHHHHHHHcCCCc--cccCCccHHHHHHHHhhC-CEEEEEeecCCCCCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 7655 1 1234321 224577899999998764 3456788874 3334433333344445556666666655
Q ss_pred h
Q 024502 261 L 261 (266)
Q Consensus 261 ~ 261 (266)
+
T Consensus 408 ~ 408 (412)
T PRK12893 408 L 408 (412)
T ss_pred h
Confidence 4
No 20
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.93 E-value=1.8e-24 Score=192.53 Aligned_cols=226 Identities=18% Similarity=0.153 Sum_probs=166.8
Q ss_pred CCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEEeeeeEEEEEEEEecCCCccCCCCCCCH
Q 024502 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINP 90 (266)
Q Consensus 11 ~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~~Has~P~~g~nA 90 (266)
.+++|.|+|++|||.|+ .|++.+++. .++|+++..||+.+.+.++++|..+++|+++|+++|++.|+.|.||
T Consensus 107 ~~~~v~~~~~~dEE~g~---~G~~~~~~~-----~~~d~~i~~ep~~~~i~~~~~g~~~~~i~~~G~~~H~s~p~~g~nA 178 (347)
T PRK08652 107 EDLNVGIAFVSDEEEGG---RGSALFAER-----YRPKMAIVLEPTDLKVAIAHYGNLEAYVEVKGKPSHGACPESGVNA 178 (347)
T ss_pred cCCCEEEEEecCcccCC---hhHHHHHHh-----cCCCEEEEecCCCCceeeecccEEEEEEEEEeeecccCCCCcCcCH
Confidence 46799999999999987 799999875 2358999999987778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 024502 91 LELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170 (266)
Q Consensus 91 i~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i 170 (266)
+.++++++.+++++....... + ..+++++.+. +|...|++|++|++.+|+|+++.++.+++.+++++.+
T Consensus 179 i~~~a~~i~~l~~~~~~~~~~--------~--~~~~~~~~i~-gg~~~nviP~~~~~~~diR~~~~~~~~~v~~~i~~~~ 247 (347)
T PRK08652 179 IEKAFEMLEKLKELLKALGKY--------F--DPHIGIQEII-GGSPEYSIPALCRLRLDARIPPEVEVEDVLDEIDPIL 247 (347)
T ss_pred HHHHHHHHHHHHHHHHhhhcc--------c--CCCCcceeee-cCCCCCccCCcEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 999999999998753221110 1 1135677788 8889999999999999999999999999999999999
Q ss_pred HHHhhcceeeeccCCCCccCCccc-------c---ccCCcccccCCCCCcccccccccccccCceeccCccc--ceeecc
Q 024502 171 DDINENIEKLDTRGPVSKYVLPDE-------N---IRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK--CIFYLS 238 (266)
Q Consensus 171 ~~~~~~~~~~~~~~~p~~~~~~~~-------~---~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~--~~~~~~ 238 (266)
++...+++ +. ..+|+...+++. + ..|.. .....+.|++|+++|.+. ..+.+.|||.. ..+--+
T Consensus 248 ~~~~v~~~-~~-~~~~~~~~~~~~~lv~~l~~a~~~~g~~--~~~~~~~g~tDa~~~~~~-gip~v~~Gpg~~~~~H~~n 322 (347)
T PRK08652 248 DEYTVKYE-YT-EIWDGFELDEDEEIVQLLEKAMKEVGLE--PEFTVMRSWTDAINFRYN-GTKTVVWGPGELDLCHTKF 322 (347)
T ss_pred HhcCceEE-Ee-ccCCcccCCCCCHHHHHHHHHHHHhCCC--CCcCcCCccchhHHHHHC-CCCEEEECCCchhhcCCCC
Confidence 76433322 11 123444444431 1 12332 122456789999999754 46678899975 345566
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHh
Q 024502 239 IYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
.|+-.+++.. +..-+++++.++
T Consensus 323 E~i~i~~l~~-~~~~l~~~~~~~ 344 (347)
T PRK08652 323 ERIDVREVEK-AKEFLKALNEIL 344 (347)
T ss_pred ceeeHHHHHH-HHHHHHHHHHHH
Confidence 7776666554 444555555554
No 21
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.93 E-value=3.2e-24 Score=196.13 Aligned_cols=247 Identities=13% Similarity=0.153 Sum_probs=181.6
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEEeeeeEEEEEEEEecCCCc
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~~Ha 81 (266)
+.|++.+..++++|.|+|..|||.++ .|+..++..+ +.+|++++.||+...+.++.+|..+++|+++|+++|+
T Consensus 151 ~~l~~~~~~~~~~i~~~~~~dEE~~g---~g~~~~~~~~----~~~d~~iv~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs 223 (427)
T PRK06837 151 DALRAAGLAPAARVHFQSVIEEESTG---NGALSTLQRG----YRADACLIPEPTGEKLVRAQVGVIWFRLRVRGAPVHV 223 (427)
T ss_pred HHHHHcCCCCCCcEEEEEEeccccCC---HhHHHHHhcC----cCCCEEEEcCCCCCccccccceeEEEEEEEEeecccc
Confidence 45667777789999999999999877 6888887665 3568999999887778889999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCC-C-CccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCH
Q 024502 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHP-K-EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (266)
Q Consensus 82 s~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~-~-~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~ 159 (266)
+.|+.|.||+..+++++.+|+.+.... .... . ........+.+++++.|+ +|...|+||++|++.+++|+.+.++.
T Consensus 224 ~~p~~g~nAi~~~~~~i~~l~~~~~~~-~~~~~~~~~~~~~~~~~t~ni~~i~-gG~~~nvVP~~~~~~~~ir~~p~~~~ 301 (427)
T PRK06837 224 REAGTGANAIDAAYHLIQALRELEAEW-NARKASDPHFEDVPHPINFNVGIIK-GGDWASSVPAWCDLDCRIAIYPGVTA 301 (427)
T ss_pred CCcccCcCHHHHHHHHHHHHHHHHHHH-hhcccCCCcccCCCCceeEeeeeEe-CCCCCCccCCEEEEEEEEeECCCCCH
Confidence 999999999999999999997653211 1000 0 000011235689999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc--------ee-eeccCCCCccCCccc-----------cccCCcccccCCCCCcccccccccc
Q 024502 160 TDVMKRLQEYVDDINENI--------EK-LDTRGPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRDDFRIFPL 219 (266)
Q Consensus 160 ~~v~~~i~~~i~~~~~~~--------~~-~~~~~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~D~~~~~~ 219 (266)
+++.+.|++.+++..... ++ +.....+|...+++. +.+|.. .....+.|++|++++..
T Consensus 302 ~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~a~~~~~g~~--~~~~~~~g~tDa~~~~~ 379 (427)
T PRK06837 302 ADAQAEIEACLAAAARDDRFLSNNPPEVVWSGFLAEGYVLEPGSEAEAALARAHAAVFGGP--LRSFVTTAYTDTRFYGL 379 (427)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhCCCeEEEEecccCCcCCCCCCHHHHHHHHHHHHHhCCC--CeeeEEeeccchHHHhc
Confidence 999999999998754321 11 111235566666651 224432 12245689999999875
Q ss_pred cccCceeccCccc-ceeecchhhhhhhhhHHHHHHHHHHHHH
Q 024502 220 RWQRHKIKFGRLK-CIFYLSIYKFISNLFSVLNKSLAAVISR 260 (266)
Q Consensus 220 ~~~~~~v~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
....+.+.|||.. ..+.-+.|+..+++... .+.+++++.+
T Consensus 380 ~~gip~v~~Gp~~~~~H~~nE~i~i~~l~~~-~~~~~~~l~~ 420 (427)
T PRK06837 380 YYGIPALCYGPSGEGIHGFDERVDLESVRKV-TKTIALFVAE 420 (427)
T ss_pred cCCCCEEEECCCCCccCCCCceEEHHHHHHH-HHHHHHHHHH
Confidence 4446678899987 45667778777776654 4444555543
No 22
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.93 E-value=1.7e-24 Score=197.21 Aligned_cols=245 Identities=15% Similarity=0.140 Sum_probs=169.2
Q ss_pred ChhhhcccCCCCceEEEEEEcCCCCCCC--CCchHHH------------------------HHHccccCC-----CCCCc
Q 024502 1 MRKLGETKLKLKSTVIAVFIASEENSAI--TGVGVDA------------------------LVKDGLLNK-----LKGGP 49 (266)
Q Consensus 1 ~k~L~~~~~~~~~~v~~if~~dEE~g~~--~~~Ga~~------------------------~i~~g~~~~-----~~~d~ 49 (266)
++.|++.+..++++|.|++++|||.+.- ...|++. |.+.|+..+ .+.++
T Consensus 107 ~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 186 (414)
T PRK12891 107 VRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLLSRRDDTGRTLGEHLARIGYAGAEPVGGYPVHA 186 (414)
T ss_pred HHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHHhccCCCCCCHHHHHHHCCCCcccccccCCCCE
Confidence 3678888889999999999999998520 0026653 344442110 01123
Q ss_pred EEEEeCCCC----------CceEEeeeeEEEEEEEEecCCCcc-CCC-CCCCHHHHHHHHHHHHHHhhccCCCCCCCCcc
Q 024502 50 LYWIDTADK----------QPCIGTGGMIPWKLHVTGKLFHSG-LPH-KAINPLELAMEALKVIQTRFYKDFPPHPKEQV 117 (266)
Q Consensus 50 ~i~~e~~~~----------~i~~~~~g~~~~~i~v~G~~~Has-~P~-~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~ 117 (266)
.+..|...+ .++++++|..+++|+++|+++|++ .|+ .|+|||..+++++.+++++..+. .+
T Consensus 187 ~~e~h~e~g~vle~~~~~~~iv~~~kG~~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~~~-~~------ 259 (414)
T PRK12891 187 AYELHIEQGAILERAGKTIGVVTAGQGQRWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAFLDALGRRD-AP------ 259 (414)
T ss_pred EEEEEeCCCHHHHHCCCcEEEEeeccCcEEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-CC------
Confidence 333343222 356789999999999999999988 686 58999999999999998764321 11
Q ss_pred CCcCCCceEeeEEEecCC-CccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cee-ee-ccCCCCccCCc
Q 024502 118 YGFETPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IEK-LD-TRGPVSKYVLP 192 (266)
Q Consensus 118 ~~~~~~~t~~~g~i~~gg-~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~--~~~-~~-~~~~p~~~~~~ 192 (266)
+.++++|.|+ +| ...|+||++|++++|+|+++.++.+++.++|++.+++++.. +++ +. ...+||..+++
T Consensus 260 -----~~t~~vg~I~-gG~~~~NvVP~~~~~~~diR~~~~e~~e~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 333 (414)
T PRK12891 260 -----DARATVGMID-ARPNSRNTVPGECFFTVEFRHPDDAVLDRLDAALRAELARIADETGLRADIEQIFGYAPAPFAP 333 (414)
T ss_pred -----CeEEEEEEEE-eeCCCcceECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEEEecCCCcCCCH
Confidence 4689999999 76 68999999999999999999999999999999999876533 222 22 34567776665
Q ss_pred c-----cc---ccCCcccccCCCCCcccccccccccccCceeccCcccce-eecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 193 D-----EN---IRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLKCI-FYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 193 ~-----~~---~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
. .+ ..|.. ....++.|++|++++...+|. .+.|||.... .|..-..+.-+.+..+..-+++++.++
T Consensus 334 ~lv~~l~~a~~~~G~~--~~~~~~~ggtDa~~~~~giPt-~~~~gp~~~~~aH~~dE~v~i~~l~~~~~il~~~l~~~ 408 (414)
T PRK12891 334 GCIDAVRDAARALGLS--HMDIVSGAGHDACFAARGAPT-GMIFVPCVDGLSHNEAEAITPEWFAAGADVLLRAVLQS 408 (414)
T ss_pred HHHHHHHHHHHHcCCC--ceecCCcchHHHHHHHhhCCE-EEEEEcCCCCCCCCccccCCHHHHHHHHHHHHHHHHHH
Confidence 5 11 13332 122467899999988654432 3668887733 344444445555566777777777665
No 23
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.93 E-value=3.8e-24 Score=190.55 Aligned_cols=218 Identities=14% Similarity=0.133 Sum_probs=165.7
Q ss_pred ceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCC-CCceEEeeeeEEEEEEEEecCCCccCCCCCCCHH
Q 024502 13 STVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGTGGMIPWKLHVTGKLFHSGLPHKAINPL 91 (266)
Q Consensus 13 ~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~-~~i~~~~~g~~~~~i~v~G~~~Has~P~~g~nAi 91 (266)
.+|.|+|++|||.|+ .|++.+++++ .++|++++.||+. ..+.++++|..+++|+++|+++|+|.|+ .||+
T Consensus 112 ~~i~~~~~~dEE~g~---~G~~~l~~~~----~~~d~~i~~ep~~~~~i~~~~kG~~~~~i~v~G~~~Has~p~--~nAi 182 (346)
T PRK00466 112 IKVMVSGLADEESTS---IGAKELVSKG----FNFKHIIVGEPSNGTDIVVEYRGSIQLDIMCEGTPEHSSSAK--SNLI 182 (346)
T ss_pred CCEEEEEEcCcccCC---ccHHHHHhcC----CCCCEEEEcCCCCCCceEEEeeEEEEEEEEEEeeccccCCCC--cCHH
Confidence 469999999999987 7999999875 2568999999886 4578899999999999999999999986 4999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 024502 92 ELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVD 171 (266)
Q Consensus 92 ~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~ 171 (266)
..+++++.++.+... ... ..+++++.|+ +|...|+||++|++++|+|+++.++.+++.+++++.++
T Consensus 183 ~~~~~~l~~l~~~~~----~~~---------~~t~~~~~i~-gG~~~NvvP~~a~~~~diR~~p~~~~~~v~~~i~~~~~ 248 (346)
T PRK00466 183 VDISKKIIEVYKQPE----NYD---------KPSIVPTIIR-AGESYNVTPAKLYLHFDVRYAINNKRDDLISEIKDKFQ 248 (346)
T ss_pred HHHHHHHHHHHhccc----cCC---------CCcceeeEEe-cCCcCcccCCceEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 999999998865311 111 3578999999 99999999999999999999999999999999998887
Q ss_pred HHhhcceeeeccCCCCccCCccc-------cc---cCCcccccCCCCCcccccccccccccCceeccCccc-c-eeecch
Q 024502 172 DINENIEKLDTRGPVSKYVLPDE-------NI---RGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK-C-IFYLSI 239 (266)
Q Consensus 172 ~~~~~~~~~~~~~~p~~~~~~~~-------~~---~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~-~-~~~~~~ 239 (266)
++ +++. ....||...+++. +. .|.. .....+.|++|+++|.+.. .+.+.|||.. . .+--+.
T Consensus 249 ~~--~~~~--~~~~~~~~~~~~~~lv~~l~~a~~~~g~~--~~~~~~~g~tD~~~~~~~~-~~~v~fGpg~~~~aH~~nE 321 (346)
T PRK00466 249 EC--GLKI--VDETPPVKVSINNPVVKALMRALLKQNIK--PRLVRKAGTSDMNILQKIT-TSIATYGPGNSMLEHTNQE 321 (346)
T ss_pred hC--cEee--ccCCCCcccCCCCHHHHHHHHHHHHhCCC--ceEEecCCcCcHHHHHHhC-CCEEEECCCCcccccCCCc
Confidence 52 2221 2345666665541 11 2321 1223457899999998655 5788999976 3 466778
Q ss_pred hhhhhhhhHHHHHHHHHHHHHh
Q 024502 240 YKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
|+..+++... ..-+.+++.+|
T Consensus 322 ~i~i~~l~~~-~~~~~~~i~~l 342 (346)
T PRK00466 322 KITLDEIYIA-VKTYMLAIEEL 342 (346)
T ss_pred eeeHHHHHHH-HHHHHHHHHHH
Confidence 8888776654 34444544443
No 24
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.93 E-value=2.7e-24 Score=195.76 Aligned_cols=241 Identities=20% Similarity=0.142 Sum_probs=169.3
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCC----CCCCchHHHHHHcccc---------------------CCCCCCcEEEEeCC
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENS----AITGVGVDALVKDGLL---------------------NKLKGGPLYWIDTA 56 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g----~~~~~Ga~~~i~~g~~---------------------~~~~~d~~i~~e~~ 56 (266)
+.|++.+..++++|.|++++|||++ +. .|++.+++.... .++.+|.++..||+
T Consensus 106 ~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~--~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~ 183 (412)
T PRK12892 106 RALNEHGIATRHPLDVVAWCDEEGSRFTPGF--LGSRAYAGRLDPADALAARCRSDGVPLRDALAAAGLAGRPRPAADRA 183 (412)
T ss_pred HHHHHcCCCCCCCeEEEEecCcccccccCcc--ccHHHHHcCCCHHHHHhCccCCCCcCHHHHHHHcCCChhhccccccc
Confidence 5677788889999999999999984 31 589988742110 02334555555543
Q ss_pred C---------------------CCceEEeeeeEEEEEEEEecCCCcc-CCC-CCCCHHHHHHHHHHHHHHhhccCCCCCC
Q 024502 57 D---------------------KQPCIGTGGMIPWKLHVTGKLFHSG-LPH-KAINPLELAMEALKVIQTRFYKDFPPHP 113 (266)
Q Consensus 57 ~---------------------~~i~~~~~g~~~~~i~v~G~~~Has-~P~-~g~nAi~~~a~~i~~l~~~~~~~~~~~~ 113 (266)
. ..++++++|..+++|+++|+++|++ .|+ .|.|||.++++++.+++++..+...
T Consensus 184 ~~~~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~~~~i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~~~~~~--- 260 (412)
T PRK12892 184 RPKGYLEAHIEQGPVLEQAGLPVGVVTGIVGIWQYRITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHFPRVCG--- 260 (412)
T ss_pred CccEEEEEEeccCHhHhhCCCcEEEEEEeccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCC---
Confidence 1 1356789999999999999999987 465 6799999999999999875432211
Q ss_pred CCccCCcCCCceEeeEEEecCC-CccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cee-ee-ccCCCCc
Q 024502 114 KEQVYGFETPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IEK-LD-TRGPVSK 188 (266)
Q Consensus 114 ~~~~~~~~~~~t~~~g~i~~gg-~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~--~~~-~~-~~~~p~~ 188 (266)
+.++++|.|+ +| ...|+||++|++++|+|+++.++.+++.++|++.++..... +++ +. ...+|+.
T Consensus 261 ---------~~~~~vg~i~-gg~~~~NvIP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~e~~~~~~~~~~ 330 (412)
T PRK12892 261 ---------PAVVTVGRVA-LDPGSPSIIPGRVEFSFDARHPSPPVLQRLVALLEALCREIARRRGCRVSVDRIAEYAPA 330 (412)
T ss_pred ---------CcEEEEEEEE-ecCCCCeEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEEecCCCc
Confidence 4689999998 65 79999999999999999999999999999999999876432 222 22 2356666
Q ss_pred cCCcc-----ccc---cCCcccccCCCCCcccccccccccccCceeccCccc-ceeec-chhhhhhhhhHHHHHHHHHHH
Q 024502 189 YVLPD-----ENI---RGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK-CIFYL-SIYKFISNLFSVLNKSLAAVI 258 (266)
Q Consensus 189 ~~~~~-----~~~---~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~ 258 (266)
.+++. .+. .|.. ....++.|++|+++|.+.+| ..+.|||.. ...|. ..|.-. ..+..+.+-+++++
T Consensus 331 ~~d~~lv~~~~~a~~~~g~~--~~~~~~~g~tDa~~~~~~ip-~~~~~gp~~~~~~H~~~E~v~i-~~l~~~~~il~~~l 406 (412)
T PRK12892 331 PCDAALVDALRAAAEAAGGP--YLEMPSGAGHDAQNMARIAP-SAMLFVPSKGGISHNPAEDTSP-ADLAQGARVLADTL 406 (412)
T ss_pred CCCHHHHHHHHHHHHHcCCC--ccccCcchHHHHHHHHhHCC-EEEEEeccCCCCCCCCCCCCCH-HHHHHHHHHHHHHH
Confidence 65544 111 3332 12345789999999987643 345588876 33344 445444 44446666666666
Q ss_pred HHh
Q 024502 259 SRL 261 (266)
Q Consensus 259 ~~~ 261 (266)
.++
T Consensus 407 ~~~ 409 (412)
T PRK12892 407 RRL 409 (412)
T ss_pred HHh
Confidence 553
No 25
>PRK13004 peptidase; Reviewed
Probab=99.92 E-value=1.5e-23 Score=190.21 Aligned_cols=244 Identities=14% Similarity=0.077 Sum_probs=174.0
Q ss_pred ChhhhcccCCCCceEEEEEEcCCCCC-CCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEEeeeeEEEEEEEEecCC
Q 024502 1 MRKLGETKLKLKSTVIAVFIASEENS-AITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLF 79 (266)
Q Consensus 1 ~k~L~~~~~~~~~~v~~if~~dEE~g-~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~~ 79 (266)
|++|++.+..++++|.++|++|||.+ + .|++.++++.. +++|++++.|++...+.++++|..+++|+++|+++
T Consensus 122 ~~~l~~~~~~~~~~i~~~~~~~EE~~~g---~~~~~~~~~~~---~~~d~~i~~e~~~~~i~~~~~G~~~~~v~v~G~~~ 195 (399)
T PRK13004 122 AKIIKDLGLDDEYTLYVTGTVQEEDCDG---LCWRYIIEEDK---IKPDFVVITEPTDLNIYRGQRGRMEIRVETKGVSC 195 (399)
T ss_pred HHHHHhcCCCCCCeEEEEEEcccccCcc---hhHHHHHHhcC---CCCCEEEEccCCCCceEEecceEEEEEEEEecccc
Confidence 35677777778999999999999974 3 57888887632 45789999999877788899999999999999999
Q ss_pred CccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCH
Q 024502 80 HSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (266)
Q Consensus 80 Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~ 159 (266)
|++.|+.|.||+..+++++.+|+..... ... ..+.+..+++++.|..++...|+||++|++.+|+|+++.++.
T Consensus 196 Ha~~p~~g~nAi~~~~~~i~~l~~~~~~-~~~------~~~~~~~~~~v~~i~~g~~~~nvvP~~~~~~~diR~~~~~~~ 268 (399)
T PRK13004 196 HGSAPERGDNAIYKMAPILNELEELNPN-LKE------DPFLGKGTLTVSDIFSTSPSRCAVPDSCAISIDRRLTVGETW 268 (399)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhccc-ccc------CCcCCCceEEEeeeecCCCCCCccCCEEEEEEEEcCCCCCCH
Confidence 9999999999999999999999875321 000 011224578899997333589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc--ceee------------e-ccCCCCccCCccc-----------cccCCcccccCCCCCcccc
Q 024502 160 TDVMKRLQEYVDDINEN--IEKL------------D-TRGPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRDD 213 (266)
Q Consensus 160 ~~v~~~i~~~i~~~~~~--~~~~------------~-~~~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~D 213 (266)
+++.+++++.......+ ++.. + ...+|+...+++. +..|... ......+++|
T Consensus 269 ~~v~~~i~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~a~~~~~g~~~--~~~~~~~~td 346 (399)
T PRK13004 269 ESVLAEIRALPAVKKANAKVSMYNYDRPSYTGLVYPTECYFPTWLYPEDHEFVKAAVEAYKGLFGKAP--EVDKWTFSTN 346 (399)
T ss_pred HHHHHHHHHHHhhccccceEEEecccCCCcccccccccccccccccCCCCHHHHHHHHHHHHHhCCCC--eecccccccC
Confidence 99999998884432212 2211 1 1234666655551 1223221 1123456778
Q ss_pred cccccccccCceeccCccc-c-eeecchhhhhhhhhHHHHHHHHHHHHH
Q 024502 214 FRIFPLRWQRHKIKFGRLK-C-IFYLSIYKFISNLFSVLNKSLAAVISR 260 (266)
Q Consensus 214 ~~~~~~~~~~~~v~~G~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
.+.|.+....+.+.|||.. . .+.-..|+..+++... .+-+++++.+
T Consensus 347 ~~~~~~~~Gip~v~~Gpg~~~~aH~~nE~i~i~~l~~~-~~~~~~~~~~ 394 (399)
T PRK13004 347 GVSIAGRAGIPTIGFGPGKEPLAHAPNEYTWKEQLVKA-AAMYAAIPKS 394 (399)
T ss_pred CeEEehhcCCCEEEECCCcccccCCCCceeEHHHHHHH-HHHHHHHHHH
Confidence 8877755667788999976 3 4555777777776654 4444444443
No 26
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.92 E-value=4.8e-24 Score=190.19 Aligned_cols=222 Identities=18% Similarity=0.180 Sum_probs=163.5
Q ss_pred CCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEEeeeeEEEEEEEEecCCCccCCCCCCC
Q 024502 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKAIN 89 (266)
Q Consensus 10 ~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~~Has~P~~g~n 89 (266)
+++++|.|+|++|||+++.. .|++.+++.. .+.+++|++++.||+.+.+.++.+|..+++|+++|+++|++.|+.|.|
T Consensus 112 ~~~~~i~~~~~~~EE~~~~~-~G~~~~~~~~-~~~~~~d~~i~~ep~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~n 189 (352)
T PRK13007 112 EPAHDLTLVFYDCEEVEAEA-NGLGRLAREH-PEWLAGDFAILLEPTDGVIEAGCQGTLRVTVTFHGRRAHSARSWLGEN 189 (352)
T ss_pred ccCCCeEEEEEecccccCCc-ccHHHHHHhc-ccccCCCEEEEecCCCCceEeeccceEEEEEEEEecccccCCCccCcC
Confidence 57899999999999986411 3888888653 223567899999998888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHH
Q 024502 90 PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEY 169 (266)
Q Consensus 90 Ai~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~ 169 (266)
|+..+++++.++++...+..... +.....+++++.|+ +|...|+||++|++.+|+|+++.++.+++.++|++.
T Consensus 190 Ai~~~~~~i~~l~~~~~~~~~~~------~~~~~~~~~~~~i~-gG~~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~ 262 (352)
T PRK13007 190 AIHKAAPVLARLAAYEPREVVVD------GLTYREGLNAVRIS-GGVAGNVIPDECVVNVNYRFAPDRSLEEALAHVREV 262 (352)
T ss_pred HHHHHHHHHHHHHHhcccccccC------CCCccceeEeEeEe-cCCcCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHH
Confidence 99999999999987532221100 01113478999999 999999999999999999999999999999999998
Q ss_pred HHHHhhcceeeeccCCCCccCCcc-------ccccCCcccccCCCCCcccccccccccccCceeccCccc--ceeecchh
Q 024502 170 VDDINENIEKLDTRGPVSKYVLPD-------ENIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK--CIFYLSIY 240 (266)
Q Consensus 170 i~~~~~~~~~~~~~~~p~~~~~~~-------~~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~--~~~~~~~~ 240 (266)
+++.+ ++++. ...++...+++ .+.+|.. ..+..|++|++++.. ...+.+.|||.. ..+--..|
T Consensus 263 ~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~g~td~~~~~~-~Gip~v~~Gpg~~~~~H~~~E~ 334 (352)
T PRK13007 263 FDGFA-EVEVT--DLAPGARPGLDHPAAAALVAAVGGE----VRAKYGWTDVARFSA-LGIPAVNFGPGDPALAHQRDEH 334 (352)
T ss_pred hcccc-EEEee--cccCCCCCCCCCHHHHHHHHHhCCC----CccccccchHHHHHh-CCCCEEEeCCCchhhccCCCCc
Confidence 87654 33321 12233333333 1233421 134578899999874 456678899865 34555666
Q ss_pred hhhhhhhH
Q 024502 241 KFISNLFS 248 (266)
Q Consensus 241 ~~~~~~~~ 248 (266)
+..+++..
T Consensus 335 v~i~~l~~ 342 (352)
T PRK13007 335 VPVAQITA 342 (352)
T ss_pred eEHHHHHH
Confidence 66666554
No 27
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.92 E-value=4.8e-24 Score=194.31 Aligned_cols=245 Identities=15% Similarity=0.056 Sum_probs=169.1
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCC--CCchHHHHHHccc--------------------cCCCCCCcEEE--EeC--
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAI--TGVGVDALVKDGL--------------------LNKLKGGPLYW--IDT-- 55 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~--~~~Ga~~~i~~g~--------------------~~~~~~d~~i~--~e~-- 55 (266)
+.|++.+..++++|.|++++|||.++- ...|++.+.+... ..+..+|.+.. .||
T Consensus 106 ~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ep~~ 185 (414)
T PRK12890 106 AALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVLATRDDDGTTLAEALRRIGGDPDALPGALRPPGA 185 (414)
T ss_pred HHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcccChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCC
Confidence 566777777899999999999997320 0047765543211 01222333222 233
Q ss_pred ---------C----------CCCceEEeeeeEEEEEEEEecCCCcc-CCC-CCCCHHHHHHHHHHHHHHhhccCCCCCCC
Q 024502 56 ---------A----------DKQPCIGTGGMIPWKLHVTGKLFHSG-LPH-KAINPLELAMEALKVIQTRFYKDFPPHPK 114 (266)
Q Consensus 56 ---------~----------~~~i~~~~~g~~~~~i~v~G~~~Has-~P~-~g~nAi~~~a~~i~~l~~~~~~~~~~~~~ 114 (266)
. ...++++++|..+++|+++|+++|++ .|+ .+.|||..+++++.+|+++..+. .+
T Consensus 186 ~~~~~~~h~~~g~~~~~~~~~~~i~~~~kG~~~~~i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~~-~~--- 261 (414)
T PRK12890 186 VAAFLELHIEQGPVLEAEGLPIGVVTAIQGIRRQAVTVEGEANHAGTTPMDLRRDALVAAAELVTAMERRARAL-LH--- 261 (414)
T ss_pred ccEEEEEeeCcCHHHHhCCCceEEEEeecCcEEEEEEEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHHHhc-CC---
Confidence 1 12356789999999999999999998 485 45899999999999998864322 11
Q ss_pred CccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cee-ee-ccCCCCccC
Q 024502 115 EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IEK-LD-TRGPVSKYV 190 (266)
Q Consensus 115 ~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~--~~~-~~-~~~~p~~~~ 190 (266)
..++++|.|+.++...|+||++|++.+|+|+++.++.+++.++|++.+++.... +++ +. ...+|+..+
T Consensus 262 --------~~~~~~g~i~~gg~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (414)
T PRK12890 262 --------DLVATVGRLDVEPNAINVVPGRVVFTLDLRSPDDAVLEAAEAALLAELEAIAAARGVRIELERLSRSEPVPC 333 (414)
T ss_pred --------CeEEEEEEEEECCCCceEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEeecCCCcCC
Confidence 467899999833589999999999999999999999999999999998876543 222 22 335666666
Q ss_pred Ccc-----c---cccCCcccccCCCCCcccccccccccccCceeccCccc-ceeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 191 LPD-----E---NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK-CIFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 191 ~~~-----~---~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
++. . +..|.. ....++.|++|+++|.+.. ...+.|||.. ...|..-....-.-+..+.+.+++++.++
T Consensus 334 ~~~l~~~l~~~~~~~g~~--~~~~~~~g~tDa~~~~~~g-p~~~~~gp~~~~~aHs~dE~v~i~~l~~~~~i~~~ll~~l 410 (414)
T PRK12890 334 DPALVDAVEAAAARLGYP--SRRMPSGAGHDAAAIARIG-PSAMIFVPCRGGISHNPEEAMDPEDLAAGARVLLDAVLRL 410 (414)
T ss_pred CHHHHHHHHHHHHHcCCC--ceecCCcccHHHHHHHhhC-CEEEEEecCCCCCCCCcCccCCHHHHHHHHHHHHHHHHHH
Confidence 654 1 113332 1124578999999998766 5566788876 33444444444445667788888888776
No 28
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.92 E-value=6.1e-24 Score=192.55 Aligned_cols=236 Identities=22% Similarity=0.275 Sum_probs=166.2
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHc--cccCCCCCCcEEEEe---CCCCCceEEeeeeEEEEEEEEe
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD--GLLNKLKGGPLYWID---TADKQPCIGTGGMIPWKLHVTG 76 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~--g~~~~~~~d~~i~~e---~~~~~i~~~~~g~~~~~i~v~G 76 (266)
+.|.+.+..++++|.|+|++|||.|+. .|++.+++. +.+++ .|.+++.+ ++...+.++++|..+++|+++|
T Consensus 130 ~~l~~~~~~~~~~v~~~~~~dEE~g~~--~g~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~i~~~~~G~~~~~v~v~G 205 (400)
T PRK13983 130 KALMDLGIRPKYNLGLAFVSDEETGSK--YGIQYLLKKHPELFKK--DDLILVPDAGNPDGSFIEIAEKSILWLKFTVKG 205 (400)
T ss_pred HHHHHhCCCCCCcEEEEEEeccccCCc--ccHHHHHhhcccccCC--CCEEEEecCCCCCCceeEEeecceEEEEEEEEe
Confidence 567777778999999999999998863 489999986 43333 36777754 3334467789999999999999
Q ss_pred cCCCccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcC-CCceEeeEEEecCC-CccceeCCeEEEEEEEeCC
Q 024502 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFE-TPSTMKPTQWSYPG-GGINQIPGECTVSGDVRLT 154 (266)
Q Consensus 77 ~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~t~~~g~i~~gg-~~~nviP~~a~~~~diR~~ 154 (266)
+++|++.|+.|+||+..+++++.+++..+.+.+.... ..+. ...+++++.+. +| ...|+||++|++++|+|++
T Consensus 206 ~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~g~~~~nvvp~~~~~~~diR~~ 280 (400)
T PRK13983 206 KQCHASTPENGINAHRAAADFALELDEALHEKFNAKD----PLFDPPYSTFEPTKKE-ANVDNINTIPGRDVFYFDCRVL 280 (400)
T ss_pred EccccCCCCCCCCHHHHHHHHHHHHHHHHHhhhcccc----cccCCCCcccccceee-cCCcCCcccCCeeEEEEEEEeC
Confidence 9999999999999999999999999873222221100 0000 12356778887 55 6889999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcc--ee-ee-cc-CCCCccCCccc-----------cccCCcccccCCCCCccccccccc
Q 024502 155 PFYNVTDVMKRLQEYVDDINENI--EK-LD-TR-GPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRDDFRIFP 218 (266)
Q Consensus 155 ~~~~~~~v~~~i~~~i~~~~~~~--~~-~~-~~-~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~D~~~~~ 218 (266)
+.++.+++.++|++.+++.+... ++ +. .. .+++...+++. +.+|.. .....+.|++|.+++.
T Consensus 281 p~~~~~~v~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~l~~a~~~~~g~~--~~~~~~~g~td~~~~~ 358 (400)
T PRK13983 281 PDYDLDEVLKDIKEIADEFEEEYGVKIEVEIVQREQAPPPTPPDSEIVKKLKRAIKEVRGIE--PKVGGIGGGTVAAFLR 358 (400)
T ss_pred CCCCHHHHHHHHHHHHHHhccccCcceeEEEeeccCCccCCCCCcHHHHHHHHHHHHhcCCC--ceeeeecCcHHHHHHH
Confidence 99999999999999998765331 21 22 11 33444444441 234432 1223467888888876
Q ss_pred ccccCceeccCcccc-eeecchhhhhhhhhHH
Q 024502 219 LRWQRHKIKFGRLKC-IFYLSIYKFISNLFSV 249 (266)
Q Consensus 219 ~~~~~~~v~~G~~~~-~~~~~~~~~~~~~~~~ 249 (266)
. ...+.+.|||..+ .+.-+.|+..+++...
T Consensus 359 ~-~gip~v~~Gp~~~~~H~~nE~v~i~~l~~~ 389 (400)
T PRK13983 359 K-KGYPAVVWSTLDETAHQPNEYAKISNLIED 389 (400)
T ss_pred H-cCCCEEEeCCccccCCCCCceeeHHHHHHH
Confidence 4 4567788999873 4555666666665543
No 29
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.92 E-value=4.6e-24 Score=193.56 Aligned_cols=250 Identities=17% Similarity=0.148 Sum_probs=168.7
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEe-----CCC-CCceEEeeeeEEEEEEEE
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWID-----TAD-KQPCIGTGGMIPWKLHVT 75 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e-----~~~-~~i~~~~~g~~~~~i~v~ 75 (266)
+.|++.+..++++|.|+|++|||.|+. .|++.+++++.+.+. |..+..+ |+. ..+.++++|..+++|+++
T Consensus 125 ~~l~~~~~~~~~~v~l~~~~dEE~g~~--~G~~~~~~~~~~~~~--~~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~ 200 (400)
T TIGR01880 125 RNLKASGFKFKRTIHISFVPDEEIGGH--DGMEKFAKTDEFKAL--NLGFALDEGLASPDDVYRVFYAERVPWWVVVTAP 200 (400)
T ss_pred HHHHHcCCCCCceEEEEEeCCcccCcH--hHHHHHHHhhhccCC--ceEEEEcCCCcccccccceeEEeeEEEEEEEEEe
Confidence 466777777899999999999999752 499999987655443 4555442 332 246779999999999999
Q ss_pred ecCCCccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCC
Q 024502 76 GKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTP 155 (266)
Q Consensus 76 G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~ 155 (266)
|+++|++.|. +.||+..+++++..|.++....+..........+...++++++.|+ +|...|+||++|++.+|+|+++
T Consensus 201 G~~~Hs~~~~-~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~-gG~~~nvIP~~a~~~~diR~~p 278 (400)
T TIGR01880 201 GNPGHGSKLM-ENTAMEKLEKSVESIRRFRESQFQLLQSNPDLAIGDVTSVNLTKLK-GGVQSNVIPSEAEAGFDIRLAP 278 (400)
T ss_pred cCCCCCCCCC-CCCHHHHHHHHHHHHHHhhHHHHHHHhcCccccccccceeecceec-cCCcCCcCCCccEEEEEEeeCC
Confidence 9999999875 4699999999998886542110000000001111123689999999 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccee-ee-ccCCC-CccCCcc-------ccc---cCCcccccCCCCCccccccccccccc
Q 024502 156 FYNVTDVMKRLQEYVDDINENIEK-LD-TRGPV-SKYVLPD-------ENI---RGRHVLSLHYLTLGRDDFRIFPLRWQ 222 (266)
Q Consensus 156 ~~~~~~v~~~i~~~i~~~~~~~~~-~~-~~~~p-~~~~~~~-------~~~---~g~~~~~~~~~~~gg~D~~~~~~~~~ 222 (266)
.++.+++.++|++.+++....+++ +. ....+ +...+++ .++ .+.. ..+..+.|++|++++.+ ..
T Consensus 279 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~~~~--~~~~~~~g~tDa~~~~~-~g 355 (400)
T TIGR01880 279 SVDFEEMENRLDEWCADAGEGVTYEFSQHSGKPLVTPHDDSNPWWVAFKDAVKEMGCT--FKPEILPGSTDSRYIRA-AG 355 (400)
T ss_pred CCCHHHHHHHHHHHHhccCCceEEEEeecCCCCCCCCCCCCCHHHHHHHHHHHHcCCe--ecceeecCcchHHHHHh-CC
Confidence 999999999999999875333332 22 11222 2222222 111 2211 12245789999999975 34
Q ss_pred CceeccCcccc----eeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 223 RHKIKFGRLKC----IFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 223 ~~~v~~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
.+.+.|||... .+....|+..+++ .-+..-+.+++.+|
T Consensus 356 ip~v~fgp~~~~~~~aH~~dE~i~i~~l-~~~~~~~~~~l~~~ 397 (400)
T TIGR01880 356 VPALGFSPMNNTPVLLHDHNEFLNEAVF-LRGIEIYQTLISAL 397 (400)
T ss_pred CCeEEECCccCCcccccCCCCceEHHHH-HHHHHHHHHHHHHh
Confidence 56688999752 3556666555544 34556667777665
No 30
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=99.91 E-value=7e-23 Score=185.57 Aligned_cols=242 Identities=15% Similarity=0.054 Sum_probs=171.7
Q ss_pred hhhhcccCCCCceEEEEEEcCCCC-CCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEEeeeeEEEEEEEEecCCC
Q 024502 2 RKLGETKLKLKSTVIAVFIASEEN-SAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFH 80 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~-g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~~H 80 (266)
+.|++.+..+++++.|++++|||. ++ .|++.+++++. +++|++++.||+...+.++++|..+++|+++|+++|
T Consensus 121 ~~l~~~~~~~~~~v~~~~~~dEE~~~g---~~~~~~~~~~~---~~~d~~i~~ep~~~~i~~g~~G~~~~~v~v~G~~~H 194 (395)
T TIGR03526 121 KIIKDLGLLDDYTLLVTGTVQEEDCDG---LCWQYIIEEDK---IKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCH 194 (395)
T ss_pred HHHHHcCCCCCceEEEEEecccccCCc---HhHHHHHhccC---CCCCEEEecCCCCceEEEEcceEEEEEEEEecCCCc
Confidence 456677666778999999999995 33 57777776543 357899999998777888999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhhccC-CCCCCCCccCCcCCCceEeeEEEecCCC-ccceeCCeEEEEEEEeCCCCCC
Q 024502 81 SGLPHKAINPLELAMEALKVIQTRFYKD-FPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTPFYN 158 (266)
Q Consensus 81 as~P~~g~nAi~~~a~~i~~l~~~~~~~-~~~~~~~~~~~~~~~~t~~~g~i~~gg~-~~nviP~~a~~~~diR~~~~~~ 158 (266)
++.|+.|.|||.++++++.+|+...... .++ +.+..+++++.|+ +|. ..|+||++|++++|+|++++++
T Consensus 195 s~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~--------~~~~~~~~v~~i~-~g~~~~nviP~~~~~~~d~R~~~~~~ 265 (395)
T TIGR03526 195 GSAPERGDNAIYKMAPILKELSQLNANLVEDP--------FLGKGTLTVSEIF-FSSPSRCAVADGCTISIDRRLTWGET 265 (395)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHhhhhhcCCc--------ccCccceeeeeee-cCCCCCCccCCeEEEEEEEecCCCCC
Confidence 9999999999999999999998753211 111 1124689999998 654 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccee-eec--------------cCCCCccCCccc-----------cccCCcccccCCCCCccc
Q 024502 159 VTDVMKRLQEYVDDINENIEK-LDT--------------RGPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRD 212 (266)
Q Consensus 159 ~~~v~~~i~~~i~~~~~~~~~-~~~--------------~~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~ 212 (266)
.+++.+.|++.++....+.++ +.. ..+||...+++. +.+|.... .....+++
T Consensus 266 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~g~~~~--~~~~~~~~ 343 (395)
T TIGR03526 266 WEYALEQIRNLPAVQGAEAEVEMYEYDRPSYTGLVYPTECYFPTWVLPEDHLITKAALETYKRLFGKEPG--VDKWTFST 343 (395)
T ss_pred HHHHHHHHHHHHHhcCCcceEEEeccccccccccccccccccCccccCCCCHHHHHHHHHHHHHhCCCCc--eeeeeeec
Confidence 999999999987654222221 110 024555455441 22333211 12235556
Q ss_pred ccccccccccCceeccCccc-c-eeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 213 DFRIFPLRWQRHKIKFGRLK-C-IFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 213 D~~~~~~~~~~~~v~~G~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
|...|..+...+.|.|||.. . .+.-+.|+..+++... .+-+++++.++
T Consensus 344 ~~~~~~~~~g~p~v~~Gpg~~~~aH~~dE~i~i~~l~~~-~~~~~~~~~~~ 393 (395)
T TIGR03526 344 NGVSIMGRHGIPVIGFGPGDEDQAHAPNEKTWKEDLVKA-AAMYAAIPTVY 393 (395)
T ss_pred ccceehhhcCCCEEEECCcchhhccCCCceEEHHHHHHH-HHHHHHHHHHh
Confidence 77544434567788999986 3 4556888888877654 34445555443
No 31
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.91 E-value=2.6e-23 Score=188.72 Aligned_cols=241 Identities=16% Similarity=0.111 Sum_probs=164.5
Q ss_pred ChhhhcccCCCCceEEEEEEcCCCC-----CCCCCchHHHHHHccc-------cC--C---------CCCCc--------
Q 024502 1 MRKLGETKLKLKSTVIAVFIASEEN-----SAITGVGVDALVKDGL-------LN--K---------LKGGP-------- 49 (266)
Q Consensus 1 ~k~L~~~~~~~~~~v~~if~~dEE~-----g~~~~~Ga~~~i~~g~-------~~--~---------~~~d~-------- 49 (266)
++.|++.+..++++|.|+++.|||. ++ .|++.+..... .+ + ..++.
T Consensus 98 ~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~---~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 174 (401)
T TIGR01879 98 VDALKEAYVVPLHPIEVVAFTEEEGSRFPYGM---WGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPDLPNQPLRPR 174 (401)
T ss_pred HHHHHHcCCCCCCCeEEEEEeCCcCcCccccc---ccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCCccccccccc
Confidence 3578888888999999999999997 44 68888764220 00 0 11222
Q ss_pred -----EEEEeCCC----------CCceEEeeeeEEEEEEEEecCCCccC-CC-CCCCHHHHHHHHHHHHHHhhccCCCCC
Q 024502 50 -----LYWIDTAD----------KQPCIGTGGMIPWKLHVTGKLFHSGL-PH-KAINPLELAMEALKVIQTRFYKDFPPH 112 (266)
Q Consensus 50 -----~i~~e~~~----------~~i~~~~~g~~~~~i~v~G~~~Has~-P~-~g~nAi~~~a~~i~~l~~~~~~~~~~~ 112 (266)
.+-+|... ..++++++|..+++|+++|+++|++. |+ .|+||+.++++++.+++++..+. ..
T Consensus 175 ~~~~~~~e~Hieqg~~l~~~g~~~~v~~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~~-~~- 252 (401)
T TIGR01879 175 GDIKAYVELHIEQGPVLESNGQPIGVVNAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKRM-GD- 252 (401)
T ss_pred ccccEEEEEEEcCCcChhhCCCeEEEEEEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-CC-
Confidence 22233221 12456899999999999999999985 53 67999999999999998764322 11
Q ss_pred CCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cee-ee-ccCCCCc
Q 024502 113 PKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IEK-LD-TRGPVSK 188 (266)
Q Consensus 113 ~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~--~~~-~~-~~~~p~~ 188 (266)
+.+.++|.|+.++...|+||++|++.+|+|++++++.+++.++|++.+++.... +++ ++ ...++|.
T Consensus 253 ----------~~~~~vg~i~~g~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (401)
T TIGR01879 253 ----------PTVGTVGKVEARPNGVNVIPGKVTFTLDLRHTDAAVLRDFTQQLENDIKAISDERDIGIDIERWMDEEPV 322 (401)
T ss_pred ----------CeEEEEEEEEecCCceEEECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCceEEEEEeecCCCc
Confidence 357899999833577999999999999999999999999999999999876542 222 22 2345666
Q ss_pred cCCcc-----c---cccCCcccccCCCCCcccccccccccccCceeccCccc-ceeec-chhhhhhhhhHHHHHHHHHHH
Q 024502 189 YVLPD-----E---NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK-CIFYL-SIYKFISNLFSVLNKSLAAVI 258 (266)
Q Consensus 189 ~~~~~-----~---~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~ 258 (266)
.++.. . +..|.. ....++.+++|+++|.... ...+.|||.. ...|. ..|+..+ -+..+..-+++++
T Consensus 323 ~~d~~lv~~l~~a~~~~g~~--~~~~~~~ggtDa~~~~~~~-~~~v~fgPg~~~~aH~~dE~v~~e-~l~~~~~vl~~~i 398 (401)
T TIGR01879 323 PCSEELVAALTELCERLGYN--ARVMVSGAGHDAQILAPIV-PIGMIFIPSINGISHNPAEWSNIT-DCAEGAKVLYLMV 398 (401)
T ss_pred CCCHHHHHHHHHHHHHcCCC--ccccccchHHHHHHHHhhC-CEEEEEecCCCCCcCCCCccCCHH-HHHHHHHHHHHHH
Confidence 55544 1 112322 1124578999999998764 4577899986 33333 3444443 3444555555555
Q ss_pred HH
Q 024502 259 SR 260 (266)
Q Consensus 259 ~~ 260 (266)
.+
T Consensus 399 ~~ 400 (401)
T TIGR01879 399 YQ 400 (401)
T ss_pred Hh
Confidence 44
No 32
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=99.91 E-value=4.9e-23 Score=185.18 Aligned_cols=210 Identities=17% Similarity=0.179 Sum_probs=152.3
Q ss_pred cCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEEeeeeEEEEEEEEecCCCccCCCCC
Q 024502 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHSGLPHKA 87 (266)
Q Consensus 8 ~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~~Has~P~~g 87 (266)
+..++++|.|+|++|||+++.. .|++.+++... +..++|++++.||+...+.++++|..+++|+++|+++|++.|+.|
T Consensus 124 ~~~~~~~i~~~~~~dEE~~~~~-~G~~~~~~~~~-~~~~~d~~iv~Ept~~~i~~g~~G~~~~~i~v~G~~~H~s~p~~g 201 (373)
T TIGR01900 124 ETELKHDLTLIAYDCEEVAAEK-NGLGHIRDAHP-DWLAADFAIIGEPTGGGIEAGCNGNIRFDVTAHGVAAHSARAWLG 201 (373)
T ss_pred ccCCCCCEEEEEEecccccCCC-CCHHHHHHhCc-ccccCCEEEEECCCCCcccccceeeEEEEEEEEeeccccCCCCCC
Confidence 4467899999999999986310 38999987632 223568999999998888899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHH
Q 024502 88 INPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQ 167 (266)
Q Consensus 88 ~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~ 167 (266)
.|||..+++++.+|+++....... . ......+++++.|+ ||...|+||++|++++|+|+.+.++.+++.+.|+
T Consensus 202 ~NAi~~~~~~i~~l~~l~~~~~~~-~-----~~~~~~t~~v~~I~-GG~~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~ 274 (373)
T TIGR01900 202 DNAIHKAADIINKLAAYEAAEVNI-D-----GLDYREGLNATFCE-GGKANNVIPDEARMHLNFRFAPDKDLAEAKALMM 274 (373)
T ss_pred CCHHHHHHHHHHHHHHhhcccccc-c-----CCcccceEEEEEEe-CCCCCcccCCeEEEEEEEecCCCcCHHHHHHHHH
Confidence 999999999999998753221110 0 01113579999999 9999999999999999999999999999999997
Q ss_pred HHHHH--------Hhh--------cceeee-ccCCCCcc---CCcc-c-------cccCCcccccCCCCCcccccccccc
Q 024502 168 EYVDD--------INE--------NIEKLD-TRGPVSKY---VLPD-E-------NIRGRHVLSLHYLTLGRDDFRIFPL 219 (266)
Q Consensus 168 ~~i~~--------~~~--------~~~~~~-~~~~p~~~---~~~~-~-------~~~g~~~~~~~~~~~gg~D~~~~~~ 219 (266)
+.++. +.. .++ ++ ....++.. +++. + ++.+.. +....|++|+++|.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~g~tD~~~~~- 348 (373)
T TIGR01900 275 GADAGAELGNGEHVAEGGEFDGQDGIE-IAMEDEAGGALPGLGAPLAQDLIDAVGEEKGRD----PLAKFGWTDVARFS- 348 (373)
T ss_pred hhhhhhhhhHHHHHHhhccccccccce-EEEcccCCCCCCCCCCHHHHHHHHHHHhccCCC----cccccCCccHHHHH-
Confidence 65322 211 111 11 11112121 1221 1 222321 12366889999986
Q ss_pred cccCceeccCccc
Q 024502 220 RWQRHKIKFGRLK 232 (266)
Q Consensus 220 ~~~~~~v~~G~~~ 232 (266)
....+.+.|||..
T Consensus 349 ~~gip~v~~Gpg~ 361 (373)
T TIGR01900 349 ALGIPALNFGAGD 361 (373)
T ss_pred hcCCCEEEeCCCC
Confidence 4467888999987
No 33
>PRK07473 carboxypeptidase; Provisional
Probab=99.91 E-value=4.8e-23 Score=185.35 Aligned_cols=233 Identities=12% Similarity=0.071 Sum_probs=167.2
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCC--CCceEEeeeeEEEEEEEEecCC
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~i~v~G~~~ 79 (266)
++|++.+..++++|.|+|++|||.|+ .|++.+++++.. ++|++++.||+. +.++++++|..+++|+++|+++
T Consensus 125 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~g~~~~~~~~~~---~~d~~iv~ep~~~~~~v~~~~~G~~~~~v~~~G~~a 198 (376)
T PRK07473 125 RQLARAGITTPLPITVLFTPDEEVGT---PSTRDLIEAEAA---RNKYVLVPEPGRPDNGVVTGRYAIARFNLEATGRPS 198 (376)
T ss_pred HHHHHcCCCCCCCEEEEEeCCcccCC---ccHHHHHHHhhc---cCCEEEEeCCCCCCCCEEEECeeeEEEEEEEEeEcC
Confidence 45666666677899999999999988 799999986532 458999999984 4688899999999999999999
Q ss_pred Ccc-CCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCC
Q 024502 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (266)
Q Consensus 80 Has-~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~ 158 (266)
|++ .|+.|+||+..+++++.+|+.+.. . ..++++|.|+ +|...|+||++|+++++.|....++
T Consensus 199 Hag~~p~~g~nAi~~~~~~i~~l~~~~~----~-----------~~~~~vg~i~-gg~~~n~VP~~~~~~~d~r~~~~~~ 262 (376)
T PRK07473 199 HAGATLSEGRSAIREMARQILAIDAMTT----E-----------DCTFSVGIVH-GGQWVNCVATTCTGEALSMAKRQAD 262 (376)
T ss_pred CCCCCcccCcCHHHHHHHHHHHHHHhcC----C-----------CceEeEeeEE-cCCCCcCCCCceEEEEEEEeCCHhH
Confidence 986 799999999999999999987521 1 3578999999 9999999999999999999877666
Q ss_pred HHHHHHHHHHHHHHHhhccee-ee-ccCCCCccCCccc-----------cccCCcccccCCCCCcccccccccccccCce
Q 024502 159 VTDVMKRLQEYVDDINENIEK-LD-TRGPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHK 225 (266)
Q Consensus 159 ~~~v~~~i~~~i~~~~~~~~~-~~-~~~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~ 225 (266)
.+++.+++.+.++. ...+++ +. ....|+...+++. +.+|.. .....+.|++|+++|+.. ..+.
T Consensus 263 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~--~~~~~~~g~tDa~~~~~~-giP~ 338 (376)
T PRK07473 263 LDRGVARMLALSGT-EDDVTFTVTRGVTRPVWEPDAGTMALYEKARAIAGQLGLS--LPHGSAGGGSDGNFTGAM-GIPT 338 (376)
T ss_pred HHHHHHHHHHhhCc-CCCeEEEEEccccCCCCCCChhHHHHHHHHHHHHHHcCCC--CccccCccccHhhhHHhc-CCCE
Confidence 66666655554431 112222 22 2234554333321 123321 122456789999999754 4566
Q ss_pred ec-cCccc-ceeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 226 IK-FGRLK-CIFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 226 v~-~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
+. |||.+ ..+--..|+..+++...- .-+++++.+|
T Consensus 339 v~g~Gpg~~~~H~~dE~v~i~~l~~~~-~vl~~~l~~~ 375 (376)
T PRK07473 339 LDGLGVRGADYHTLNEHIEVDSLAERG-RLMAGLLATL 375 (376)
T ss_pred EEeccCCCCCCCCCCceEecccHHHHH-HHHHHHHHhc
Confidence 74 99977 345557888777776543 3344444443
No 34
>PRK08262 hypothetical protein; Provisional
Probab=99.91 E-value=2.2e-23 Score=193.57 Aligned_cols=253 Identities=15% Similarity=0.118 Sum_probs=163.8
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEE------EEeCCC------CCceEEeeeeEE
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLY------WIDTAD------KQPCIGTGGMIP 69 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i------~~e~~~------~~i~~~~~g~~~ 69 (266)
+.|++.+.+++++|+|+|++|||+|+ .|++.+++.....+.++|.++ ..++.+ +.++++.+|..+
T Consensus 167 ~~l~~~~~~l~~~I~llf~~dEE~g~---~G~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~p~~~i~~~~kG~~~ 243 (486)
T PRK08262 167 EALLAQGFQPRRTIYLAFGHDEEVGG---LGARAIAELLKERGVRLAFVLDEGGAITEGVLPGVKKPVALIGVAEKGYAT 243 (486)
T ss_pred HHHHHcCCCCCCeEEEEEecccccCC---cCHHHHHHHHHHhcCCEEEEEeCCceecccccCCCCceEEeeEEeeeeeEE
Confidence 56777777789999999999999987 799998864221223334432 222211 234567899999
Q ss_pred EEEEEEecCCCccCCCCCCCHHHHHHHHHHHHHHhhccC-C-----------CCCCC-----------------------
Q 024502 70 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD-F-----------PPHPK----------------------- 114 (266)
Q Consensus 70 ~~i~v~G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~-~-----------~~~~~----------------------- 114 (266)
++|+++|+++|++.|+. .||+..+++++.+|++...+. + .+...
T Consensus 244 ~~i~v~G~~~Hss~p~~-~nai~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (486)
T PRK08262 244 LELTARATGGHSSMPPR-QTAIGRLARALTRLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAK 322 (486)
T ss_pred EEEEEecCCCCCCCCCC-CCHHHHHHHHHHHHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhc
Confidence 99999999999999998 999999999999987631000 0 00000
Q ss_pred CccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcceeeeccCCCCccCCcc-
Q 024502 115 EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPD- 193 (266)
Q Consensus 115 ~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~~~~~~~~~~p~~~~~~~- 193 (266)
......+..++++++.|+ ||...|+||++|++.+|+|+++.++.+++.++|++.+++...++++......|+...+++
T Consensus 323 ~~~~~~~~~~t~~i~~I~-gG~~~NvIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 401 (486)
T PRK08262 323 SPETAAMLRTTTAPTMLK-GSPKDNVLPQRATATVNFRILPGDSVESVLAHVRRAVADDRVEIEVLGGNSEPSPVSSTDS 401 (486)
T ss_pred CCccceeEEeeeeeeEEe-cCCccccCCCccEEEEEEEeCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCC
Confidence 000001224689999999 999999999999999999999999999999999998876422222111222344433333
Q ss_pred ----------ccccCCcccccCCCCCcccccccccccccC----ceeccCccc-c-eeecchhhhhhhhhHHHHHHHHHH
Q 024502 194 ----------ENIRGRHVLSLHYLTLGRDDFRIFPLRWQR----HKIKFGRLK-C-IFYLSIYKFISNLFSVLNKSLAAV 257 (266)
Q Consensus 194 ----------~~~~g~~~~~~~~~~~gg~D~~~~~~~~~~----~~v~~G~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 257 (266)
++..+... ..+.++.|++|+++|.+..|. ..+.+||.. . .+.-..|+..+ .+..+.+-+.++
T Consensus 402 ~lv~~l~~a~~~~~g~~~-~~~~~~~g~tDa~~~~~~~p~~~~~~~~~~gpg~~~~~Ht~dE~i~i~-~l~~~~~i~~~~ 479 (486)
T PRK08262 402 AAYKLLAATIREVFPDVV-VAPYLVVGATDSRHYSGISDNVYRFSPLRLSPEDLARFHGTNERISVA-NYARMIRFYYRL 479 (486)
T ss_pred HHHHHHHHHHHHHCCCCc-cccceecccccHHHHHHhcCCeEEECCccCCcccccCCCCCCCceeHH-HHHHHHHHHHHH
Confidence 12233211 122346799999999876542 234466653 2 33344444444 444556666666
Q ss_pred HHHh
Q 024502 258 ISRL 261 (266)
Q Consensus 258 ~~~~ 261 (266)
+.++
T Consensus 480 l~~~ 483 (486)
T PRK08262 480 IENA 483 (486)
T ss_pred HHHh
Confidence 5543
No 35
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.91 E-value=3.4e-23 Score=188.02 Aligned_cols=243 Identities=16% Similarity=0.075 Sum_probs=171.3
Q ss_pred ChhhhcccCCCCceEEEEEEcCCCCC-----CCCCchHHHHHHcc----c---cC-------------CC----------
Q 024502 1 MRKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDALVKDG----L---LN-------------KL---------- 45 (266)
Q Consensus 1 ~k~L~~~~~~~~~~v~~if~~dEE~g-----~~~~~Ga~~~i~~g----~---~~-------------~~---------- 45 (266)
++.|++.+.+++++|.+++..+||.+ . .|++.+.-.- . .| ++
T Consensus 100 ~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~---~Gs~~~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~ 176 (406)
T TIGR03176 100 VDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVF---WGSKNIFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRKAPTVRD 176 (406)
T ss_pred HHHHHHcCCCCCCCeEEEEeccccCccCCccc---ccHHHHhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCccccccccc
Confidence 36788888899999999999999985 4 5777765200 0 00 01
Q ss_pred CCCcEEEEeCCCCC----------ceEEeeeeEEEEEEEEecCCCccCCCC--CCCHHHHHHHHHHHHHHhhccCCCCCC
Q 024502 46 KGGPLYWIDTADKQ----------PCIGTGGMIPWKLHVTGKLFHSGLPHK--AINPLELAMEALKVIQTRFYKDFPPHP 113 (266)
Q Consensus 46 ~~d~~i~~e~~~~~----------i~~~~~g~~~~~i~v~G~~~Has~P~~--g~nAi~~~a~~i~~l~~~~~~~~~~~~ 113 (266)
++++.+-+|...|. ++.+.+|..+++|+++|+++|++.|+. ++||+.++++++.++.+...+ .. .
T Consensus 177 ~~~~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~-~~--~ 253 (406)
T TIGR03176 177 DIKAFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSIERAKE-IG--D 253 (406)
T ss_pred ccceEEEEEECCCcchHHCCCeEEEEeecccceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-cC--C
Confidence 22345556654331 245799999999999999999997654 489999999999999876332 11 1
Q ss_pred CCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cee-ee-ccCCCCcc
Q 024502 114 KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IEK-LD-TRGPVSKY 189 (266)
Q Consensus 114 ~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~--~~~-~~-~~~~p~~~ 189 (266)
..++++|.|+.+|+..|+||++|++++|+|+++.++.+++.+++++.+++++.. +++ +. ....+|..
T Consensus 254 ---------~~~~tvG~I~~gg~~~NvIP~~a~~~~DiR~~~~~~~e~v~~~i~~~i~~ia~~~g~~~ei~~~~~~~p~~ 324 (406)
T TIGR03176 254 ---------PLVLTFGKVEPVPNTVNVVPGETTFTIDCRHTDAAVLRNFTKELENDMKAIADEMDITIDIDLWMDEAPVP 324 (406)
T ss_pred ---------CcEEEEEEEEEcCCceEEECCeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCCCC
Confidence 468999999856789999999999999999999999999999999999887644 222 22 11223333
Q ss_pred CCcc-----ccc---cCCcccccCCCCCcccccccccccccCceeccCccc-ceeecchhhhhhhhhHHHHHHHHHHHHH
Q 024502 190 VLPD-----ENI---RGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK-CIFYLSIYKFISNLFSVLNKSLAAVISR 260 (266)
Q Consensus 190 ~~~~-----~~~---~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
.++. .+. .+.. ....++.||+|+++|.+.+| ..+.|||.. ...|..-..+...-+..+..-+++++.+
T Consensus 325 ~d~~lv~~l~~a~~~~~~~--~~~~~sggg~Da~~~~~~vP-~~~ifgp~~~g~~H~p~E~v~~e~l~~g~~vl~~~l~~ 401 (406)
T TIGR03176 325 MNKEIVAIIEQLAKAEKLN--YRLMHSGAGHDAQIFAPRVP-TAMIFVPSIGGISHNPAERTNIEDLVEGVKTLADMLYE 401 (406)
T ss_pred CCHHHHHHHHHHHHHcCCC--ceecCcccHHHHHHHHHHCC-EEEEEEeCCCCCCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 3433 111 1111 12356789999999998754 456788864 4455655566666677788888888776
Q ss_pred h
Q 024502 261 L 261 (266)
Q Consensus 261 ~ 261 (266)
|
T Consensus 402 l 402 (406)
T TIGR03176 402 L 402 (406)
T ss_pred H
Confidence 6
No 36
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=99.91 E-value=1.5e-22 Score=183.33 Aligned_cols=243 Identities=14% Similarity=0.031 Sum_probs=171.1
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEEeeeeEEEEEEEEecCCCc
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKLFHS 81 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~~Ha 81 (266)
++|++.+..++++|.|++++|||.++. .|.+.+++.. .+++|++++.||+...+.++++|..+++|+++|+++|+
T Consensus 121 ~~l~~~g~~~~~~i~~~~~~dEE~~~g--~~~~~~~~~~---~~~~d~~iv~ep~~~~i~~g~~G~~~~~v~~~G~~~Hs 195 (395)
T TIGR03320 121 KIIKDLGLLDDYTLLVTGTVQEEDCDG--LCWQYIIEED---GIKPEFVVITEPTDMNIYRGQRGRMEIKVTVKGVSCHG 195 (395)
T ss_pred HHHHHcCCCCCceEEEEecccccccCc--hHHHHHHHhc---CCCCCEEEEcCCCccceEEecceEEEEEEEEeeecccc
Confidence 456777767788999999999997530 3446666543 34678999999988778889999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCC-ccceeCCeEEEEEEEeCCCCCCHH
Q 024502 82 GLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG-GINQIPGECTVSGDVRLTPFYNVT 160 (266)
Q Consensus 82 s~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~-~~nviP~~a~~~~diR~~~~~~~~ 160 (266)
+.|+.|.||+..+++++.++++..... .. ..+.+..++++|.|+ +|. ..|+||++|++.+|+|+++.++.+
T Consensus 196 s~p~~g~nAi~~~~~~l~~l~~~~~~~-~~------~~~~~~~t~~v~~i~-~g~~~~NviP~~~~~~~diR~~p~~~~~ 267 (395)
T TIGR03320 196 SAPERGDNAIYKMAPILKELSQLNANL-VE------DPFLGKGTLTVSEIF-FSSPSRCAVADGCTISIDRRLTWGETWE 267 (395)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhh-cC------CcccCcCceeeeeee-cCCCCcCccCCEEEEEEEEecCCCCCHH
Confidence 999999999999999999998753211 10 011124588999998 654 789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccee-eec--------------cCCCCccCCccc-----------cccCCcccccCCCCCccccc
Q 024502 161 DVMKRLQEYVDDINENIEK-LDT--------------RGPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRDDF 214 (266)
Q Consensus 161 ~v~~~i~~~i~~~~~~~~~-~~~--------------~~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~D~ 214 (266)
++.++|++.+......+++ +.. ..+|+...+++. +++|.... .....+++|.
T Consensus 268 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~g~~~~--~~~~~~~~~~ 345 (395)
T TIGR03320 268 YALEQIRNLPAVQGAEAKVEMYNYDRPSYTGLVYPTECYFPTWVLPEDHLITKAALETYKRLFGKEPG--VDKWTFSTNG 345 (395)
T ss_pred HHHHHHHHHHhhcCCCceEeeeccCcccccccccccccccCccccCCCCHHHHHHHHHHHHHhCCCCc--eeecceeccc
Confidence 9999999987653222221 110 124555455441 22333211 1123555677
Q ss_pred ccccccccCceeccCccc-c-eeecchhhhhhhhhHHHHHHHHHHHHH
Q 024502 215 RIFPLRWQRHKIKFGRLK-C-IFYLSIYKFISNLFSVLNKSLAAVISR 260 (266)
Q Consensus 215 ~~~~~~~~~~~v~~G~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
..+..+...+.|.|||.. . .+.-+.|+..+++... ..-+++++..
T Consensus 346 ~~~~~~~g~p~v~~Gpg~~~~aH~~nE~v~i~~l~~~-~~~~~~~~~~ 392 (395)
T TIGR03320 346 VSIMGRHGIPVIGFGPGDEDQAHAPNEKTWKEDLVRA-AAMYAAIPTV 392 (395)
T ss_pred ceehhhcCCCEEEECCCchhhccCCCcEEEHHHHHHH-HHHHHHHHHH
Confidence 444445667888999986 4 3556889888887653 4444555543
No 37
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.91 E-value=1.5e-22 Score=180.50 Aligned_cols=228 Identities=17% Similarity=0.109 Sum_probs=166.9
Q ss_pred cCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCC-CceEEeeeeEEEEEEEEecCCCccCCCC
Q 024502 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFHSGLPHK 86 (266)
Q Consensus 8 ~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~i~v~G~~~Has~P~~ 86 (266)
+..++++|.|+|++|||.|+ .|...++.++ .++|++++.||+.. .++++++|..+++|+++|+++|+|.|
T Consensus 107 ~~~~~~~i~~~~~~dEE~g~---~~~~~~l~~~----~~~d~~iv~Ept~~~~i~~~~kG~~~~~l~~~G~~~Hss~~-- 177 (348)
T PRK04443 107 EALVRARVSFVGAVEEEAPS---SGGARLVADR----ERPDAVIIGEPSGWDGITLGYKGRLLVTYVATSESFHSAGP-- 177 (348)
T ss_pred cccCCCCEEEEEEcccccCC---hhHHHHHHhc----cCCCEEEEeCCCCccceeeecccEEEEEEEEEeCCCccCCC--
Confidence 34678999999999999987 5666666544 25789999999874 58889999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHH
Q 024502 87 AINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166 (266)
Q Consensus 87 g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i 166 (266)
+.||+..+++++.+|.++.. ...+ ....+...+++++.|+ . ..|+||++|++.+|+|+++.++.+++.+.|
T Consensus 178 g~NAi~~~~~~l~~l~~~~~-~~~~-----~~~~~~~~~~~i~~i~-~--~~n~iP~~~~~~~d~R~~p~~~~~~i~~~i 248 (348)
T PRK04443 178 EPNAAEDAIEWWLAVEAWFE-ANDG-----RERVFDQVTPKLVDFD-S--SSDGLTVEAEMTVGLRLPPGLSPEEAREIL 248 (348)
T ss_pred CCCHHHHHHHHHHHHHHHHh-cCcc-----ccccccccceeeeEEe-c--CCCCCCceEEEEEEEccCCCCCHHHHHHHH
Confidence 78999999999999987532 1011 1112234577888887 2 459999999999999999999999999999
Q ss_pred HHHHHHHhhcceeeeccCCCCccCCccc-----------cccCCcccccCCCCCcccccccccccccCceeccCccc-c-
Q 024502 167 QEYVDDINENIEKLDTRGPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK-C- 233 (266)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~-~- 233 (266)
++.+.. +++......||...+++. +..+. .......|++|+++|.+....+.+.|||.. +
T Consensus 249 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~g~tD~~~~~~~~gip~v~~Gpg~~~~ 321 (348)
T PRK04443 249 DALLPT----GTVTFTGAVPAYMVSKRTPLARAFRVAIREAGGT---PRLKRKTGTSDMNVVAPAWGCPMVAYGPGDSDL 321 (348)
T ss_pred HHhCCC----cEEEEecCCCceecCCCCHHHHHHHHHHHHhcCC---cceeccccCCcHHHHhhhcCCCEEEECCCCccc
Confidence 888743 222112245666555551 12221 112335689999999765567788999985 4
Q ss_pred eeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 234 IFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
.+--+.|+-.+++.. ..+-+.+++.||
T Consensus 322 ~H~~dE~i~i~~l~~-~~~~~~~~~~~l 348 (348)
T PRK04443 322 DHTPDEHLPLAEYLR-AIAVLTDVLERL 348 (348)
T ss_pred cCCCcccccHHHHHH-HHHHHHHHHhhC
Confidence 366788888888765 455666776664
No 38
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.90 E-value=2e-23 Score=186.92 Aligned_cols=221 Identities=14% Similarity=0.169 Sum_probs=160.3
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCC--CCceEEeeeeEEEEEEEEecCC
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD--KQPCIGTGGMIPWKLHVTGKLF 79 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~--~~i~~~~~g~~~~~i~v~G~~~ 79 (266)
+.|++.+ .++++|.|+|++|||.|+ .|++.+++.+ ++.++++..+++. +.++++.+|..+++|+++|+++
T Consensus 113 ~~l~~~~-~~~~~v~~~~~~~EE~g~---~G~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~g~~~~~i~~~G~~~ 184 (361)
T TIGR01883 113 DVLSTEE-TPHGTIEFIFTVKEELGL---IGMRLFDESK----ITAAYGYCLDAPGEVGNIQLAAPTQVKVDATIAGKDA 184 (361)
T ss_pred HHHHhcC-CCCCCEEEEEEcccccCc---hhHhHhChhh----cCcceeEEEeCCCCcceEEecCCceEEEEEEEEeeec
Confidence 3455544 568899999999999987 7999887643 3456777777643 4577788999999999999999
Q ss_pred Ccc-CCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCC
Q 024502 80 HSG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (266)
Q Consensus 80 Has-~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~ 158 (266)
|++ .|+.|+||+..+++++.++... ...+ ..+++++.++ +|...|+||++|++.+|+|+.+.++
T Consensus 185 Ha~~~p~~g~nAi~~~~~~i~~l~~~---~~~~-----------~~~~~i~~i~-gG~~~nvVP~~~~~~~diR~~~~~~ 249 (361)
T TIGR01883 185 HAGLVPEDGISAISVARMAIHAMRLG---RIDE-----------ETTANIGSFS-GGVNTNIVQDEQLIVAEARSLSFRK 249 (361)
T ss_pred CCCCCcccCcCHHHHHHHHHHhcccc---CCCC-----------ccccccceee-cCCccCccCCceEEEEEEecCCHHH
Confidence 985 7999999999999999888542 1121 3568899998 9999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHhhc--cee-ee-ccCCCCccCCccc-------cc---cCCcccccCCCCCcccccccccccccCc
Q 024502 159 VTDVMKRLQEYVDDINEN--IEK-LD-TRGPVSKYVLPDE-------NI---RGRHVLSLHYLTLGRDDFRIFPLRWQRH 224 (266)
Q Consensus 159 ~~~v~~~i~~~i~~~~~~--~~~-~~-~~~~p~~~~~~~~-------~~---~g~~~~~~~~~~~gg~D~~~~~~~~~~~ 224 (266)
.+++.+++++.++..... .++ +. ...+++...+++. +. +|.. ....++.|++|+++|.+. ..+
T Consensus 250 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~g~~--~~~~~~~g~tD~~~~~~~-giP 326 (361)
T TIGR01883 250 AEAQVQTMRERFEQAAEKYGATLEEETRLIYEGFKIHPQHPLMNIFKKAAKKIGLK--TSEIFSGGGSDANVLNEK-GVP 326 (361)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEEEEeccccccCCCCCHHHHHHHHHHHHcCCC--cEEEecCcccHHHHHhhC-CCc
Confidence 888999999988776432 221 22 2345555444431 11 2321 112456799999999854 456
Q ss_pred eeccCcccc-eeecchhhhhhhhhH
Q 024502 225 KIKFGRLKC-IFYLSIYKFISNLFS 248 (266)
Q Consensus 225 ~v~~G~~~~-~~~~~~~~~~~~~~~ 248 (266)
.+.|||... .+--..|+..+++..
T Consensus 327 ~v~~G~g~~~~Hs~~E~v~i~~~~~ 351 (361)
T TIGR01883 327 TVNLSAGYVHAHTEKETISIEQLVK 351 (361)
T ss_pred eEEECCCcccCcCcceeEEHHHHHH
Confidence 777888773 333355665555544
No 39
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.90 E-value=2.2e-22 Score=183.78 Aligned_cols=245 Identities=17% Similarity=0.195 Sum_probs=176.3
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEEeeeeEEEEEEEEecC---
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIGTGGMIPWKLHVTGKL--- 78 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~~~g~~~~~i~v~G~~--- 78 (266)
++|++.+..++++|.|+|++|||+|+ .|++.+++.+. .+|++++.||+... ..+++|...++++++|++
T Consensus 131 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~G~~~~~~~~~----~~d~~i~~ep~~~~-~~~~~G~~~~~~~v~g~~~~~ 202 (421)
T PRK08596 131 QLLHEAGIELPGDLIFQSVIGEEVGE---AGTLQCCERGY----DADFAVVVDTSDLH-MQGQGGVITGWITVKSPQTFH 202 (421)
T ss_pred HHHHHcCCCCCCcEEEEEEeccccCC---cCHHHHHhcCC----CCCEEEECCCCCCc-cccccceeeEEEEEEeecccc
Confidence 56777777889999999999999987 79999998753 46899999987654 468888887788888764
Q ss_pred -------CCccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEE
Q 024502 79 -------FHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDV 151 (266)
Q Consensus 79 -------~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~di 151 (266)
+|++.|+.|.||+..+++++.+|+.+... +.......... .+..+++++.|+ ||...|+||++|++.+|+
T Consensus 203 ~~~~~~~~H~~~p~~G~nai~~~~~~i~~l~~~~~~-~~~~~~~~~~~-~~~~t~~v~~i~-gG~~~nvvP~~~~~~~d~ 279 (421)
T PRK08596 203 DGTRRQMIHAGGGLFGASAIEKMMKIIQSLQELERH-WAVMKSYPGFP-PGTNTINPAVIE-GGRHAAFIADECRLWITV 279 (421)
T ss_pred cccccccccccCCccCcCHHHHHHHHHHHHHHHHHH-HhhcccCccCC-CCCcceeeeeee-CCCCCCccCceEEEEEEe
Confidence 79999999999999999999999875211 00000000000 124689999999 999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHhhc----------ce-----eee--ccCCCCccCCccc-----------cccCCcccc
Q 024502 152 RLTPFYNVTDVMKRLQEYVDDINEN----------IE-----KLD--TRGPVSKYVLPDE-----------NIRGRHVLS 203 (266)
Q Consensus 152 R~~~~~~~~~v~~~i~~~i~~~~~~----------~~-----~~~--~~~~p~~~~~~~~-----------~~~g~~~~~ 203 (266)
|++++++.+++.++|++.+++.... ++ ++. ...+|+...+++. +.+|.. .
T Consensus 280 R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~a~~~~~g~~--~ 357 (421)
T PRK08596 280 HFYPNETYEQVIKEIEEYIGKVAAADPWLRENPPQFKWGGESMIEDRGEIFPSLEIDSEHPAVKTLSSAHESVLSKN--A 357 (421)
T ss_pred eeCCCCCHHHHHHHHHHHHHHHHhcChhhhhCCceeEEecccccccccccCCCccCCCCchHHHHHHHHHHHHhCCC--C
Confidence 9999999999999999999875321 11 011 1235777776661 233432 1
Q ss_pred cCCCCCcccccccccccccCceeccCccc--ceeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 204 LHYLTLGRDDFRIFPLRWQRHKIKFGRLK--CIFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 204 ~~~~~~gg~D~~~~~~~~~~~~v~~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
......+++|++++.+ ...+.+.|||.. ..+-.+.|+-.+++... +.-+.+++.++
T Consensus 358 ~~~~~~g~tD~~~~~~-~gip~v~~Gpg~~~~~H~~~E~v~i~~~~~~-~~~~~~~l~~~ 415 (421)
T PRK08596 358 ILDMSTTVTDGGWFAE-FGIPAVIYGPGTLEEAHSVNEKVEIEQLIEY-TKVITAFIYEW 415 (421)
T ss_pred eeeEEeeecchhhhhh-cCCCEEEECCCcccccCCCCceEEHHHHHHH-HHHHHHHHHHH
Confidence 2233568899999975 456778889875 44667788887777654 44455555443
No 40
>PRK09133 hypothetical protein; Provisional
Probab=99.89 E-value=2.4e-22 Score=185.99 Aligned_cols=248 Identities=17% Similarity=0.136 Sum_probs=163.6
Q ss_pred hhhhcccCCCCceEEEEEEcCCC-CCCCCCchHHHHHHccccCCCCCCcEEEEeCCC------C-----CceEEeeeeEE
Q 024502 2 RKLGETKLKLKSTVIAVFIASEE-NSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD------K-----QPCIGTGGMIP 69 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE-~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~------~-----~i~~~~~g~~~ 69 (266)
+.|++.+..++++|.|+|++||| +|+ .|++.+++... +.++.|++++ |+.. + .+.++++|..+
T Consensus 154 ~~l~~~~~~~~~~i~~~~~~dEE~~g~---~G~~~l~~~~~-~~~~~~~~i~-e~~~~~~~~~gept~~~i~~g~kG~~~ 228 (472)
T PRK09133 154 IRLKREGFKPKRDIILALTGDEEGTPM---NGVAWLAENHR-DLIDAEFALN-EGGGGTLDEDGKPVLLTVQAGEKTYAD 228 (472)
T ss_pred HHHHhcCCCCCCCEEEEEECccccCcc---chHHHHHHHHh-hccCeEEEEE-CCCccccCCCCCceEEEeeeecceeEE
Confidence 56677777789999999999999 666 79999997642 2345678888 6643 2 23468999999
Q ss_pred EEEEEEecCCCccCCCCCCCHHHHHHHHHHHHHHhhccCC-CC----------------------------CC-------
Q 024502 70 WKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDF-PP----------------------------HP------- 113 (266)
Q Consensus 70 ~~i~v~G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~-~~----------------------------~~------- 113 (266)
++|+++|+++|+|.|+ +.|||..+++++.+|.+...+.. .+ .+
T Consensus 229 ~~i~v~G~~~Hss~p~-~~nAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (472)
T PRK09133 229 FRLEVTNPGGHSSRPT-KDNAIYRLAAALSRLAAYRFPVMLNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALL 307 (472)
T ss_pred EEEEEecCCCCCCCCC-CCChHHHHHHHHHHHhhCCCCCccCCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHH
Confidence 9999999999999997 48999999999999876411100 00 00
Q ss_pred -CCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcceeeeccCCCCccCCc
Q 024502 114 -KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLP 192 (266)
Q Consensus 114 -~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~~~~~~~~~~p~~~~~~ 192 (266)
...........+++++.|+ +|...|+||++|++++|+|+++.++.+++.++|++.++.....++.. ....++...+.
T Consensus 308 ~~~~~~~~~~~~t~~~~~i~-gG~~~NvVP~~a~~~lDiR~~p~~~~e~v~~~I~~~i~~~~v~v~~~-~~~~~~~~~~~ 385 (472)
T PRK09133 308 SADPSYNAMLRTTCVATMLE-GGHAENALPQRATANVNCRIFPGDTIEAVRATLKQVVADPAIKITRI-GDPSPSPASPL 385 (472)
T ss_pred hcCcchhheeeeeEEeeEEe-cCCcCccCCCceEEEEEEEeCCchhHHHHHHHHHHHhcCCCEEEEEc-cCCCCCCCCCC
Confidence 0000000124689999999 99999999999999999999999999999999999886521122211 11122222222
Q ss_pred c-------c----cccCCcccccCCCCCcccccccccccccCcee----ccCccc--ceeecchhhhhhhhhHHHHHHHH
Q 024502 193 D-------E----NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKI----KFGRLK--CIFYLSIYKFISNLFSVLNKSLA 255 (266)
Q Consensus 193 ~-------~----~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v----~~G~~~--~~~~~~~~~~~~~~~~~~~~~~~ 255 (266)
+ . +.++... ..+..+.|++|+++|... ..+.+ .|||.. ..+--..|+..+++... ..-++
T Consensus 386 ~~~l~~~l~~~~~~~~~g~~-~~~~~~~ggtDa~~~~~~-gip~~~~~~i~gp~~~~~aH~~dE~v~i~~l~~~-~~~l~ 462 (472)
T PRK09133 386 RPDIMKAVEKLTAAMWPGVP-VIPSMSTGATDGRYLRAA-GIPTYGVSGLFGDPDDTFAHGLNERIPVASFYEG-RDFLY 462 (472)
T ss_pred CcHHHHHHHHHHHHHCCCCc-eeccccccccchHHHHhc-CCCceeecCcccCcccccCCCCCCceeHHHHHHH-HHHHH
Confidence 2 1 1221111 123457899999999753 23333 366544 23556777777766553 33444
Q ss_pred HHHHH
Q 024502 256 AVISR 260 (266)
Q Consensus 256 ~~~~~ 260 (266)
+++.+
T Consensus 463 ~~l~~ 467 (472)
T PRK09133 463 ELVKD 467 (472)
T ss_pred HHHHH
Confidence 44443
No 41
>PRK06446 hypothetical protein; Provisional
Probab=99.88 E-value=1.2e-21 Score=179.57 Aligned_cols=250 Identities=16% Similarity=0.153 Sum_probs=166.1
Q ss_pred hhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCC------CceEEeeeeEEEEEEEEe
Q 024502 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK------QPCIGTGGMIPWKLHVTG 76 (266)
Q Consensus 3 ~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~------~i~~~~~g~~~~~i~v~G 76 (266)
.|++.+ .++++|.|+|++|||.|+ .|++.+++.. ...+++|+++ .|++.. .++++++|..+++++++|
T Consensus 117 ~l~~~~-~~~~~i~~~~~~dEE~g~---~g~~~~l~~~-~~~~~~d~vi-~E~~~~~~~~~~~i~~~~kG~~~~~l~v~G 190 (436)
T PRK06446 117 HLIDKH-KLNVNVKFLYEGEEEIGS---PNLEDFIEKN-KNKLKADSVI-MEGAGLDPKGRPQIVLGVKGLLYVELVLRT 190 (436)
T ss_pred HHHHcC-CCCCCEEEEEEcccccCC---HhHHHHHHHH-HHHhCCCEEE-ECCCCccCCCCeEEEEecCeEEEEEEEEEe
Confidence 344443 567899999999999998 7888888752 1124567877 476643 467899999999999999
Q ss_pred --cCCCccCCCCCCCHHHHHHHHHHHHHHhhcc--------CCCCCC---------------------------CCc---
Q 024502 77 --KLFHSGLPHKAINPLELAMEALKVIQTRFYK--------DFPPHP---------------------------KEQ--- 116 (266)
Q Consensus 77 --~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~--------~~~~~~---------------------------~~~--- 116 (266)
+++|+|.|+.|.||+..+++++.+|.+...+ .+.+.. ...
T Consensus 191 ~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 270 (436)
T PRK06446 191 GTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDVRELTEEERELLKKYDIDVEELRKALGFKELKYSDREK 270 (436)
T ss_pred CCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCCCCCCHHHHHHHHhCCCCHHHHHHHhCCccccCCCccc
Confidence 9999999999999999999999998753100 000000 000
Q ss_pred -cCCcCCCceEeeEEEecCC----CccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcceeeeccCCCCccCC
Q 024502 117 -VYGFETPSTMKPTQWSYPG----GGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVL 191 (266)
Q Consensus 117 -~~~~~~~~t~~~g~i~~gg----~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~~~~~~~~~~p~~~~~ 191 (266)
........+++++.++ +| ...|+||++|++++|+|+++.++.+++.+.|++.+++....+++......+|...+
T Consensus 271 ~~~~~~~~~t~nv~~i~-~g~~~~~~~nvvP~~a~~~~d~R~~p~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~p~~~~ 349 (436)
T PRK06446 271 IAEALLTEPTCNIDGFY-SGYTGKGSKTIVPSRAFAKLDFRLVPNQDPYKIFELLKKHLQKVGFNGEIIVHGFEYPVRTS 349 (436)
T ss_pred HHHHHHhCCcEEEeeee-ccccCCCCCcEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHHcCCCeEEEEcCCcceeecC
Confidence 0001224688999997 65 46799999999999999999999999999999999874333332112234555555
Q ss_pred ccc-----------cccCCcccccCCCCCcccccccccccccCc--eeccCc--cc-ceeecchhhhhhhhhHHHHHHHH
Q 024502 192 PDE-----------NIRGRHVLSLHYLTLGRDDFRIFPLRWQRH--KIKFGR--LK-CIFYLSIYKFISNLFSVLNKSLA 255 (266)
Q Consensus 192 ~~~-----------~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~--~v~~G~--~~-~~~~~~~~~~~~~~~~~~~~~~~ 255 (266)
++. +.++.... ......|++|+++|.+....+ ...||+ .. ..+-.+.|+..+++.. +++-+.
T Consensus 350 ~~~~~v~~l~~a~~~~~g~~~~-~~~~~~g~~d~~~~~~~~gip~v~~~~g~g~~~~~~H~~dE~i~i~~l~~-~~~~~~ 427 (436)
T PRK06446 350 VNSKVVKAMIESAKRVYGTEPV-VIPNSAGTQPMGLFVYKLGIRDIVSAIGVGGYYSNAHAPNENIRIDDYYK-AIKHTE 427 (436)
T ss_pred CCCHHHHHHHHHHHHHhCCCCc-eecCCCCcchHHHHHHHhCCCcceeecccCCCCcCCcCCCCCcCHHHHHH-HHHHHH
Confidence 541 22333211 112234666888887543333 324544 23 5566777877776654 556667
Q ss_pred HHHHHh
Q 024502 256 AVISRL 261 (266)
Q Consensus 256 ~~~~~~ 261 (266)
++++++
T Consensus 428 ~~~~~~ 433 (436)
T PRK06446 428 EFLKLY 433 (436)
T ss_pred HHHHHh
Confidence 777665
No 42
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.88 E-value=2.9e-21 Score=171.33 Aligned_cols=220 Identities=18% Similarity=0.173 Sum_probs=160.9
Q ss_pred CceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCC-CceEEeeeeEEEEEEEEecCCCccCCCCCCCH
Q 024502 12 KSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-QPCIGTGGMIPWKLHVTGKLFHSGLPHKAINP 90 (266)
Q Consensus 12 ~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~-~i~~~~~g~~~~~i~v~G~~~Has~P~~g~nA 90 (266)
.++|.|+|++|||+|+ .|++.+++... ++++++.||+.. .+.++++|..+++++++|+++|+|.|. ||
T Consensus 101 ~~~i~~~~~~dEE~g~---~G~~~~~~~~~-----~~~~ii~ept~~~~i~~~~kG~~~~~v~~~G~~~Hss~~~---~a 169 (336)
T TIGR01902 101 GIKVIVSGLVDEESSS---KGAREVIDKNY-----PFYVIVGEPSGAEGITLGYKGSLQLKIMCEGTPFHSSSAG---NA 169 (336)
T ss_pred CCcEEEEEEeCcccCC---ccHHHHHhhcC-----CCEEEEecCCCCcceeeeeeeEEEEEEEEEecCcccCCCh---hH
Confidence 4689999999999987 79999987642 358899999874 578899999999999999999999886 48
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 024502 91 LELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170 (266)
Q Consensus 91 i~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i 170 (266)
+..+..++.++.+.+..... . ...+++++.++ +|...|+||++|++++|+|+++.++.+++.+++++.
T Consensus 170 i~~~~~~~~~l~~~~~~~~~-~---------~~~~~~~~~i~-gg~~~nvIP~~a~~~idiR~~p~~~~~~~~~~i~~~- 237 (336)
T TIGR01902 170 AELLIDYSKKIIEVYKQPEN-Y---------DKPSIVPTIIR-FGESYNDTPAKLELHFDLRYPPNNKPEEAIKEITDK- 237 (336)
T ss_pred HHHHHHHHHHHHHHhccccC-C---------CCCcceeEEEE-ccCCCcCCCceEEEEEEEeeCCCCCHHHHHHHHHhc-
Confidence 99999999988743221111 0 12467888898 999999999999999999999999999988888761
Q ss_pred HHHhhcceeeeccCCCCccCCccc-------cc---cCCcccccCCCCCcccccccccccccCceeccCccc-c-eeecc
Q 024502 171 DDINENIEKLDTRGPVSKYVLPDE-------NI---RGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK-C-IFYLS 238 (266)
Q Consensus 171 ~~~~~~~~~~~~~~~p~~~~~~~~-------~~---~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~-~-~~~~~ 238 (266)
..+++......||...+++. +. .+.. .....+.|++|+++|.+.++.+.+.|||.. . .+--+
T Consensus 238 ----~~~~~~~~~~~~p~~~~~~~~lv~~~~~a~~~~~~~--~~~~~~~g~tD~~~~~~~~g~p~v~~Gpg~~~~aH~~n 311 (336)
T TIGR01902 238 ----FPICLEIVDETPPYKVSRNNPLVRAFVRAIRKQGMK--PRLKKKTGTSDMNILAPIWTVPMVAYGPGDSTLDHTPQ 311 (336)
T ss_pred ----cCceEEEEeccCceecCCCCHHHHHHHHHHHHcCCC--eEEeeccccCccceeccccCCCeEEECCCCcccCCCCc
Confidence 12222112345666555551 11 1211 111334688999999876688899999986 3 36778
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHh
Q 024502 239 IYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
.|+..+++...- .-+.+++.++
T Consensus 312 E~v~i~~l~~~~-~~~~~~l~~l 333 (336)
T TIGR01902 312 EKISLAEYLIGI-KTLMLAIEEL 333 (336)
T ss_pred ceeEHHHHHHHH-HHHHHHHHHH
Confidence 888888876644 4445555443
No 43
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.88 E-value=2.5e-21 Score=182.99 Aligned_cols=244 Identities=18% Similarity=0.206 Sum_probs=169.5
Q ss_pred ChhhhcccCCCCceEEEEEEcCCCC-----CCCCCchHHHHH--------H----ccc-----cC--CC-----------
Q 024502 1 MRKLGETKLKLKSTVIAVFIASEEN-----SAITGVGVDALV--------K----DGL-----LN--KL----------- 45 (266)
Q Consensus 1 ~k~L~~~~~~~~~~v~~if~~dEE~-----g~~~~~Ga~~~i--------~----~g~-----~~--~~----------- 45 (266)
++.|++.+.+++++|.|+...+||+ ++ .|++.+. + +|. ++ ++
T Consensus 282 ~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~---~GS~~~~G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~ 358 (591)
T PRK13799 282 VKELHEQGERLPFHFEVIAFAEEEGQRFKATF---LGSGALIGDFNMELLDIKDADGISLREAIQHAGHCIDAIPKIARD 358 (591)
T ss_pred HHHHHHcCCCCCCCeEEEEecCCCccCCCccc---cchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 3678899999999999999999998 33 5777665 1 122 00 11
Q ss_pred --CCCcEEEEeCCCC--------C--ceEEeeeeEEEEEEEEecCCCccC-C-CCCCCHHHHHHHHHHHHHHhhccCCCC
Q 024502 46 --KGGPLYWIDTADK--------Q--PCIGTGGMIPWKLHVTGKLFHSGL-P-HKAINPLELAMEALKVIQTRFYKDFPP 111 (266)
Q Consensus 46 --~~d~~i~~e~~~~--------~--i~~~~~g~~~~~i~v~G~~~Has~-P-~~g~nAi~~~a~~i~~l~~~~~~~~~~ 111 (266)
++++.+-+|...| . ++++.+|..+++|+++|+++|++. | +.++||+.++++++..++.+..+. +
T Consensus 359 ~~~~~a~~ElHIEQgp~Le~~~~~igvV~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~~--~ 436 (591)
T PRK13799 359 PADVLGFIEVHIEQGPVLLELDIPLGIVTSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQD--Q 436 (591)
T ss_pred CCCccEEEEEEeCCCHHHHHCCCcEEEEeeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHhc--C
Confidence 2234555665544 2 356899999999999999999985 5 458999999999999998864332 1
Q ss_pred CCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cee-ee-ccCCCC
Q 024502 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IEK-LD-TRGPVS 187 (266)
Q Consensus 112 ~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~--~~~-~~-~~~~p~ 187 (266)
.. ..++++|.|+.+++..|+||++|++++|+|+++.++.+.+.+++++.+++++.. +++ ++ ....|+
T Consensus 437 ~~---------~~v~tVG~I~~~~ga~NvIP~~a~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~~g~~~ei~~~~~~~~ 507 (591)
T PRK13799 437 HA---------SLVATMGQLNVPSGSTNVIPGRCQFSLDIRAATDEIRDAAVADILAEIAAIAARRGIEYKAELAMKAAA 507 (591)
T ss_pred CC---------CcEEEEEEEEecCCCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEEecCCC
Confidence 11 357899999854568999999999999999999999999988888888877643 222 22 234667
Q ss_pred ccCCcc-----c---cccCCcccccCCCCCcccccccccccccCceeccCccc--ceeecchhhhhhhhhHHHHHHHHHH
Q 024502 188 KYVLPD-----E---NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK--CIFYLSIYKFISNLFSVLNKSLAAV 257 (266)
Q Consensus 188 ~~~~~~-----~---~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (266)
..+|+. . +.+|.. ....++.+|+|+++|++..| ..+.|+|.+ ...|..-..+...-+..+..-+.++
T Consensus 508 ~~~d~~lv~~~~~a~~~~G~~--~~~~~sgag~Da~~~a~~~p-~amif~~~g~~g~sHsp~E~v~~edL~~g~~vl~~~ 584 (591)
T PRK13799 508 APCAPELMKQLEAATDAAGVP--LFELASGAGHDAMKIAEIMD-QAMLFTRCGNAGISHNPLESMTADDMELSADAFLDF 584 (591)
T ss_pred cCCCHHHHHHHHHHHHHcCCC--ceecCcchHHHHHHHHhhCC-EEEEEEecCCCCCCCCccccCCHHHHHHHHHHHHHH
Confidence 777775 1 123322 12256789999999998765 345566642 3334444444444455666666666
Q ss_pred HHHh
Q 024502 258 ISRL 261 (266)
Q Consensus 258 ~~~~ 261 (266)
+.++
T Consensus 585 l~~l 588 (591)
T PRK13799 585 LNNF 588 (591)
T ss_pred HHHH
Confidence 6554
No 44
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.88 E-value=3.2e-21 Score=182.32 Aligned_cols=242 Identities=18% Similarity=0.194 Sum_probs=170.4
Q ss_pred ChhhhcccCCCCceEEEEEEcCCCCC-----CCCCchHHHH--------HH----ccc-----c--CCC-----------
Q 024502 1 MRKLGETKLKLKSTVIAVFIASEENS-----AITGVGVDAL--------VK----DGL-----L--NKL----------- 45 (266)
Q Consensus 1 ~k~L~~~~~~~~~~v~~if~~dEE~g-----~~~~~Ga~~~--------i~----~g~-----~--~~~----------- 45 (266)
++.|++.+..++++|.|++..|||++ . .|++.+ ++ +|. + .++
T Consensus 282 ~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~---~GS~~~~G~~~~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~ 358 (591)
T PRK13590 282 VRELHRQGRRLPFGLEVVGFAEEEGQRYKATF---LGSGALIGDFDPAWLDQKDADGITMREAMQHAGLCIDDIPKLRRD 358 (591)
T ss_pred HHHHHHcCCCCCCCeEEEEecCCccccCCccc---cchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccC
Confidence 36788888888899999999999973 3 466642 22 111 0 011
Q ss_pred --CCCcEEEEeCCCC----------CceEEeeeeEEEEEEEEecCCCccC-CCC-CCCHHHHHHHHHHHHHHhhccCCCC
Q 024502 46 --KGGPLYWIDTADK----------QPCIGTGGMIPWKLHVTGKLFHSGL-PHK-AINPLELAMEALKVIQTRFYKDFPP 111 (266)
Q Consensus 46 --~~d~~i~~e~~~~----------~i~~~~~g~~~~~i~v~G~~~Has~-P~~-g~nAi~~~a~~i~~l~~~~~~~~~~ 111 (266)
++++.+-+|...| .++++.+|..+++|+++|+++|++. |.. +.||+..+++++..+++.... .+
T Consensus 359 ~~~~~a~~ElHiEqg~~Le~~~~~~gvV~~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~--~~ 436 (591)
T PRK13590 359 PARYLGFVEVHIEQGPVLNELDLPLGIVTSINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ--DG 436 (591)
T ss_pred CCCccEEEEEEeCCCHHHHHCCCceEEEeeeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc--CC
Confidence 1234455555433 2456899999999999999999995 543 689999999999999875321 11
Q ss_pred CCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc--cee-ee-ccCCCC
Q 024502 112 HPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN--IEK-LD-TRGPVS 187 (266)
Q Consensus 112 ~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~--~~~-~~-~~~~p~ 187 (266)
..+.++|.++..|+..|+||++|++++|+|+.+.++.+.+.+++++.+++++.. +++ ++ ....|+
T Consensus 437 -----------~~v~tVG~i~~~Gg~~NVIP~~a~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~~g~~vei~~~~~~~~ 505 (591)
T PRK13590 437 -----------DSVGTVGMLEVPGGSINVVPGRCRFSLDIRAPTDAQRDAMVADVLAELEAICERRGLRYTLEETMRAAA 505 (591)
T ss_pred -----------CcEEEEEEEEECCCCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEeecCCC
Confidence 346799999855779999999999999999999999999999999998887643 222 22 335666
Q ss_pred ccCCcc-----c---cccCCcccccCCCCCcccccccccccccCceeccCccc--ceeecchhhhhhhhhHHHHHHHHHH
Q 024502 188 KYVLPD-----E---NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK--CIFYLSIYKFISNLFSVLNKSLAAV 257 (266)
Q Consensus 188 ~~~~~~-----~---~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (266)
..+|+. . +.+|.. ....++.||+|+++|++.+| ..+.|||.. ...|..-..+...-+..+..-+.++
T Consensus 506 ~~~d~~lv~~~~~aa~~~G~~--~~~~~sggg~Da~~~a~~~p-~~mifgpg~~~g~sH~p~E~v~~edL~~g~~vl~~l 582 (591)
T PRK13590 506 APSAPAWQQRWEAAVAALGLP--LFRMPSGAGHDAMKLHEIMP-QAMLFVRGENAGISHNPLESSTADDMQLAVQAFQHL 582 (591)
T ss_pred cCCCHHHHHHHHHHHHHcCCC--cccCCcchhHHHHHHHHHCC-EEEEEEeeCCCCCCCCCccCCCHHHHHHHHHHHHHH
Confidence 777765 1 123332 12356889999999998765 345687763 3445555555556666777777777
Q ss_pred HHHh
Q 024502 258 ISRL 261 (266)
Q Consensus 258 ~~~~ 261 (266)
+.++
T Consensus 583 l~~l 586 (591)
T PRK13590 583 LDQL 586 (591)
T ss_pred HHHH
Confidence 7554
No 45
>PRK13381 peptidase T; Provisional
Probab=99.87 E-value=2.7e-21 Score=175.67 Aligned_cols=232 Identities=13% Similarity=0.051 Sum_probs=159.6
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCC-CCCceEEeeeeEEEEEEEEecCCC
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~i~v~G~~~H 80 (266)
+.|++.+ .++++|.|+|++|||+|+ .|++.++.++ +.+|.++..|.. ++.+.++.+|..+++|+++|+++|
T Consensus 151 ~~l~~~~-~~~g~i~~~~~~dEE~g~---~G~~~~~~~~----~~~d~~~~~~~~~~~~i~~~~~G~~~~~v~v~Gk~aH 222 (404)
T PRK13381 151 ENLTENE-VEHGDIVVAFVPDEEIGL---RGAKALDLAR----FPVDFAYTIDCCELGEVVYENFNAASAEITITGVTAH 222 (404)
T ss_pred HHHHhcC-CCCCCEEEEEEccccccc---ccHHHHHHhc----CCCCEEEEecCCCcceEEEecCcceEEEEEEEeEecC
Confidence 3455553 468899999999999987 7999998653 345788776643 355777899999999999999999
Q ss_pred cc-CCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCH
Q 024502 81 SG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (266)
Q Consensus 81 as-~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~ 159 (266)
++ .|+.|.|||.++++++.+|+++..+...+.. ..+++++.++ ++ |++|++.+|+|+.+.++.
T Consensus 223 a~~~p~~g~NAI~~a~~~i~~l~~~~~~~~~~~~---------~~~i~v~~i~-g~------p~~~~~~~diR~~~~~~~ 286 (404)
T PRK13381 223 PMSAKGVLVNPILMANDFISHFPRQETPEHTEGR---------EGYIWVNDLQ-GN------VNKAKLKLIIRDFDLDGF 286 (404)
T ss_pred CCCCcccCcCHHHHHHHHHHhCCccCCCCCCCCc---------ccEEEEEeEE-eC------cceEEEEEEEecCCHHHH
Confidence 87 5899999999999999988764222211100 2356777776 32 899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc-----cee-ee-ccCCCCccCCcc-------ccc---cCCcccccCCCCCccccccccccccc
Q 024502 160 TDVMKRLQEYVDDINEN-----IEK-LD-TRGPVSKYVLPD-------ENI---RGRHVLSLHYLTLGRDDFRIFPLRWQ 222 (266)
Q Consensus 160 ~~v~~~i~~~i~~~~~~-----~~~-~~-~~~~p~~~~~~~-------~~~---~g~~~~~~~~~~~gg~D~~~~~~~~~ 222 (266)
+++.++|++.+++++.. +++ +. ....++...+++ .+. .|.. .....+.+++|+++|.+. .
T Consensus 287 e~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~l~~a~~~~g~~--~~~~~~~g~tDa~~~~~~-g 363 (404)
T PRK13381 287 EARKQFIEEVVAKINAKYPTARVSLTLTDQYSNISNSIKDDRRAVDLAFDAMKELGIE--PKVIPMRGGTDGAALSAK-G 363 (404)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEEEeCCchhhcccccCHHHHHHHHHHHHHcCCC--eeeccCCccchHHHHhcC-C
Confidence 99999999999887543 221 11 111222222222 111 2321 122456799999999753 4
Q ss_pred CceeccCccc-ceeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 223 RHKIKFGRLK-CIFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 223 ~~~v~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
.+.+.|||.+ ..+....|+..+++... .+-+.+++.++
T Consensus 364 iP~v~~GpG~~~aH~~dE~v~i~~l~~~-~~v~~~~~~~~ 402 (404)
T PRK13381 364 LPTPNLFTGAHNFHSRFEFLPVSSFVKS-YEVTITICLLA 402 (404)
T ss_pred CCeEEECccccCCcCcceeEEHHHHHHH-HHHHHHHHHHh
Confidence 6778888887 34556778777666543 34445555543
No 46
>PRK05469 peptidase T; Provisional
Probab=99.87 E-value=2e-21 Score=176.73 Aligned_cols=231 Identities=13% Similarity=0.019 Sum_probs=154.5
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCC-CCCceEEeeeeEEEEEEEEecCCC
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFH 80 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~i~v~G~~~H 80 (266)
++|++.+..++++|.|+|++|||+| .|++.++.+. +..|..+..++. .+.+.++.+|..+++|+++|+++|
T Consensus 153 ~~l~~~~~~~~g~v~~~f~~dEE~g----~Ga~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~g~~~~~i~v~Gk~~H 224 (408)
T PRK05469 153 EYLIAHPEIKHGDIRVAFTPDEEIG----RGADKFDVEK----FGADFAYTVDGGPLGELEYENFNAASAKITIHGVNVH 224 (408)
T ss_pred HHHHhCCCCCCCCEEEEEecccccC----CCHHHhhhhh----cCCcEEEEecCCCcceEEeccCceeEEEEEEeeecCC
Confidence 4566666667899999999999986 4888886432 234566555543 345666778899999999999999
Q ss_pred cc-CCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCH
Q 024502 81 SG-LPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (266)
Q Consensus 81 as-~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~ 159 (266)
++ .|++|.|||.++++++..|+....+..... ...+++++.++ +| |++|++++|+|+.+.++.
T Consensus 225 a~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~---------~~~~i~~g~i~-gg------p~~~~i~~diR~~~~e~~ 288 (408)
T PRK05469 225 PGTAKGKMVNALLLAADFHAMLPADETPETTEG---------YEGFYHLTSIK-GT------VEEAELSYIIRDFDREGF 288 (408)
T ss_pred CCCCcccccCHHHHHHHHHHhCCCCCCCCCCCC---------ceEEEEEEEEE-Ec------cceEEEEEEEecCCHHHH
Confidence 86 589999999999999998775422111100 02346777776 43 899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc---ee-ee-ccCCC----CccCCcc-----ccc---cCCcccccCCCCCccccccccccccc
Q 024502 160 TDVMKRLQEYVDDINENI---EK-LD-TRGPV----SKYVLPD-----ENI---RGRHVLSLHYLTLGRDDFRIFPLRWQ 222 (266)
Q Consensus 160 ~~v~~~i~~~i~~~~~~~---~~-~~-~~~~p----~~~~~~~-----~~~---~g~~~~~~~~~~~gg~D~~~~~~~~~ 222 (266)
+++.++|++.+++.+... .+ ++ ...++ +..+++. .+. .|.. ....++.|++|+++|.. ..
T Consensus 289 e~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~~a~~~~g~~--~~~~~~~ggtD~~~~~~-~g 365 (408)
T PRK05469 289 EARKALMQEIAKKVNAKYGEGRVELEIKDQYYNMREKIEPHPHIVDLAKQAMEDLGIE--PIIKPIRGGTDGSQLSF-MG 365 (408)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEEeehhhhhhhhhcCCHHHHHHHHHHHHHcCCC--cEEecCCCcccHHHHhh-CC
Confidence 999999999998876332 11 22 11222 2333433 111 2321 12245789999999985 34
Q ss_pred CceeccCcccceeecc-hhhhhhhhhHHHHHHHHHHHHH
Q 024502 223 RHKIKFGRLKCIFYLS-IYKFISNLFSVLNKSLAAVISR 260 (266)
Q Consensus 223 ~~~v~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
.+.+.+||.+...|.. .|+..+++ ..+..-+.+++..
T Consensus 366 iP~v~~gpG~~~~H~~~E~v~i~~l-~~~~~~~~~~~~~ 403 (408)
T PRK05469 366 LPCPNIFTGGHNFHGKFEFVSLESM-EKAVEVIVEIAEL 403 (408)
T ss_pred CceEEECcCcccCcCcceeeEHHHH-HHHHHHHHHHHHH
Confidence 5667788876333333 55555444 4555556666543
No 47
>PRK07906 hypothetical protein; Provisional
Probab=99.86 E-value=9.6e-21 Score=173.21 Aligned_cols=246 Identities=17% Similarity=0.161 Sum_probs=158.5
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCC-----------CceEEeeeeEEE
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----------QPCIGTGGMIPW 70 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~-----------~i~~~~~g~~~~ 70 (266)
++|++.+..++++|.|+|++|||+++. .|++.+++... +.++...++..|++.. .++++++|..++
T Consensus 118 ~~l~~~~~~~~~~i~~~~~~dEE~g~~--~g~~~l~~~~~-~~~~~~~~ii~e~~~~~~~~~~~~~~~~i~~~~kG~~~~ 194 (426)
T PRK07906 118 RHLARTGRRPPRDLVFAFVADEEAGGT--YGAHWLVDNHP-ELFEGVTEAISEVGGFSLTVPGRDRLYLIETAEKGLAWM 194 (426)
T ss_pred HHHHHcCCCCCccEEEEEecCcccchh--hhHHHHHHHHH-HhccchheEEECCCceeeccCCCccEEEEEeccceEEEE
Confidence 567777778899999999999999762 49999987532 1111112344454321 256789999999
Q ss_pred EEEEEecCCCccCCCCCCCHHHHHHHHHHHHHHhhccC------------CCC-----CCCC-------------ccCCc
Q 024502 71 KLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKD------------FPP-----HPKE-------------QVYGF 120 (266)
Q Consensus 71 ~i~v~G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~------------~~~-----~~~~-------------~~~~~ 120 (266)
+|+++|+++|+|.|+. .|||..+++++.+|.+...+. +.. .... .....
T Consensus 195 ~v~v~G~~~Hss~p~~-~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 273 (426)
T PRK07906 195 RLTARGRAGHGSMVND-DNAVTRLAEAVARIGRHRWPLVLTPTVRAFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGA 273 (426)
T ss_pred EEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhh
Confidence 9999999999999975 899999999999987532110 000 0000 00000
Q ss_pred CCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcceeeeccCCCCccCCccc------
Q 024502 121 ETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDE------ 194 (266)
Q Consensus 121 ~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~~~~~~~~~~p~~~~~~~~------ 194 (266)
+...+++++.|+ +|...|+||++|++.+|+|+++.++ +++.+.+++.+. ..+++......|+...+++.
T Consensus 274 ~~~~t~~~~~i~-gG~~~NviP~~~~~~~d~R~~p~~~-~~i~~~i~~~~~---~~v~~~~~~~~~~~~~~~~~~~v~~l 348 (426)
T PRK07906 274 TLRNTANPTMLK-AGYKVNVIPGTAEAVVDGRFLPGRE-EEFLATVDELLG---PDVEREWVHRDPALETPFDGPLVDAM 348 (426)
T ss_pred hhcccccceeEe-ccCccccCCCceEEEEEEeECCCCc-HHHHHHHHHHhC---CCeEEEEecCCCCCCCCCCcHHHHHH
Confidence 113589999999 9999999999999999999998875 666666666543 22332112235555555541
Q ss_pred -c----ccCCcccccCCCCCcccccccccccccCceeccCccc---------ceeecchhhhhhhhhHHHHHHHHHHHH
Q 024502 195 -N----IRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK---------CIFYLSIYKFISNLFSVLNKSLAAVIS 259 (266)
Q Consensus 195 -~----~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (266)
+ ..+.. ........||+|+++|.. +..+.+.|||.. ..+--+.|+..+++... ..-+++++.
T Consensus 349 ~~a~~~~~~~~-~~~~~~~~ggtDa~~~~~-~g~p~~~~gp~~~~~~~~~~~~~H~~~E~v~~~~l~~~-~~~~~~~l~ 424 (426)
T PRK07906 349 NAALLAEDPGA-RVVPYMLSGGTDAKAFSR-LGIRCYGFAPLRLPPDLDFAALFHGVDERVPVDALRFG-VRVLDRFLR 424 (426)
T ss_pred HHHHHHHCCCC-eEeeeeecccCcHHHHHh-cCCceEEEeccccCccccccccCcCCCCceeHHHHHHH-HHHHHHHHH
Confidence 1 11111 112234678899999984 456788899863 23555677776665543 334444443
No 48
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.86 E-value=4.9e-21 Score=167.09 Aligned_cols=226 Identities=16% Similarity=0.164 Sum_probs=158.8
Q ss_pred ChhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeC--CCC---CceEEeeeeEEEEEEEE
Q 024502 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT--ADK---QPCIGTGGMIPWKLHVT 75 (266)
Q Consensus 1 ~k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~--~~~---~i~~~~~g~~~~~i~v~ 75 (266)
++.|+..+.+++|+|.+.|+||||+++. .|++.+.+...+++... +.+.-|+ +.. .++++++|.+|++|++.
T Consensus 141 ir~L~~~g~kp~Rti~lsfvpDEEi~G~--~Gm~~fa~~~~~~~l~~-~filDEG~~se~d~~~vfyaEkg~w~~~v~~~ 217 (420)
T KOG2275|consen 141 IRNLKASGFKPKRTIHLSFVPDEEIGGH--IGMKEFAKTEEFKKLNL-GFILDEGGATENDFATVFYAEKGPWWLKVTAN 217 (420)
T ss_pred HHHHHhcCCCcCceEEEEecCchhccCc--chHHHHhhhhhhcccce-eEEecCCCCCcccceeEEEEeeceeEEEEEec
Confidence 3567788889999999999999999875 79999987444444432 3333444 333 34789999999999999
Q ss_pred ecCCCccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCC
Q 024502 76 GKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTP 155 (266)
Q Consensus 76 G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~ 155 (266)
|++||+|.|.. ..|+.++.+++.++.+...++..-..+++.....+.+|+|++.|+ ||.+.|++|...++.+|+|..+
T Consensus 218 G~~GHss~~~~-nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~~~~~vtT~Nv~~i~-GGv~~N~~P~~~ea~~dirv~~ 295 (420)
T KOG2275|consen 218 GTPGHSSYPPP-NTAIEKLEKLVESLEEFREKQVDLLASGPKLALGDVTTINVGIIN-GGVQSNVLPETFEAAFDIRVRP 295 (420)
T ss_pred CCCCCCCCCCC-ccHHHHHHHHHHHHHHhHHHHHHHhhcCCceeccceeEEeeeeee-cccccCcCchhheeeeeeEecc
Confidence 99999998532 478999999999988764222111111223344457899999999 9999999999999999999999
Q ss_pred CCCHHHHHHHH-HHHHHHHhhccee-eecc---CCCCccCCcc--------ccccCCccc-ccCCCCCcccccccccccc
Q 024502 156 FYNVTDVMKRL-QEYVDDINENIEK-LDTR---GPVSKYVLPD--------ENIRGRHVL-SLHYLTLGRDDFRIFPLRW 221 (266)
Q Consensus 156 ~~~~~~v~~~i-~~~i~~~~~~~~~-~~~~---~~p~~~~~~~--------~~~~g~~~~-~~~~~~~gg~D~~~~~~~~ 221 (266)
..+..++.+++ ++++++.+..++. +... .+++...+.+ ...+.+... ..+....|++|.+++.. .
T Consensus 296 ~~d~~~i~~~l~~~w~~~~~eg~t~~f~~~~~~~~~~~t~~~~s~p~w~~~~~a~~~~~~k~~~~i~~gstdsr~~rn-~ 374 (420)
T KOG2275|consen 296 HVDVKAIRDQLEDEWAEEAGEGVTLEFSQKVILDYPPVTPTDDSNPFWTAFAGALKDEGGKGYPEIGPGSTDSRHIRN-E 374 (420)
T ss_pred CCCHHHHHHHHHHHhhhhcCCceEEeccCcccCCCCCCCCCCCCChHHHHHHHHHHHhcCccceeecccccccchhhh-c
Confidence 99999999999 8888877655442 2222 4444433333 111111111 12466789999998864 3
Q ss_pred cCceeccCccc
Q 024502 222 QRHKIKFGRLK 232 (266)
Q Consensus 222 ~~~~v~~G~~~ 232 (266)
-.+...|=|+.
T Consensus 375 gvp~~~fsp~~ 385 (420)
T KOG2275|consen 375 GVPAIGFSPII 385 (420)
T ss_pred Ccchhcccccc
Confidence 45666666554
No 49
>PRK08201 hypothetical protein; Provisional
Probab=99.86 E-value=2.4e-20 Score=171.97 Aligned_cols=250 Identities=16% Similarity=0.133 Sum_probs=166.9
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCC-----CceEEeeeeEEEEEEEEe
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~v~G 76 (266)
+.|.+.+..++++|.|+|++|||.|+ .|+..++++.. +.+++|++++.|++.. .++++++|..+++|+++|
T Consensus 133 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~ii~e~~~~~~~~~~i~~g~kG~~~~~l~v~G 208 (456)
T PRK08201 133 EALLKVEGTLPVNVKFCIEGEEEIGS---PNLDSFVEEEK-DKLAADVVLISDTTLLGPGKPAICYGLRGLAALEIDVRG 208 (456)
T ss_pred HHHHHhcCCCCCCEEEEEEcccccCC---ccHHHHHHhhH-HhccCCEEEEeCCCcCCCCCEEEEEecCCeEEEEEEEEe
Confidence 34555555678899999999999998 78888887532 2345689999998742 367899999999999999
Q ss_pred cCC--CccCCCC-CCCHHHHHHHHHHHHHHhhcc--------CCCCCCC-------C------------c-cCCc-----
Q 024502 77 KLF--HSGLPHK-AINPLELAMEALKVIQTRFYK--------DFPPHPK-------E------------Q-VYGF----- 120 (266)
Q Consensus 77 ~~~--Has~P~~-g~nAi~~~a~~i~~l~~~~~~--------~~~~~~~-------~------------~-~~~~----- 120 (266)
+++ |+|.|.. +.|||..+++++.+|++...+ .+.+... . . ...+
T Consensus 209 ~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (456)
T PRK08201 209 AKGDLHSGLYGGAVPNALHALVQLLASLHDEHGTVAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGY 288 (456)
T ss_pred CCCCCccccccCcCCCHHHHHHHHHHhcCCCCCCEecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcch
Confidence 998 9987654 479999999999998653110 0000000 0 0 0000
Q ss_pred ------CCCceEeeEEEecCCC----ccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh-ccee-ee-ccCCCC
Q 024502 121 ------ETPSTMKPTQWSYPGG----GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE-NIEK-LD-TRGPVS 187 (266)
Q Consensus 121 ------~~~~t~~~g~i~~gg~----~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~-~~~~-~~-~~~~p~ 187 (266)
....+++++.|+ ||. ..|+||++|++.+|+|+.+.++.+++.++|++.+++... .+++ +. ...+||
T Consensus 289 ~~~~~~~~~~t~~i~~i~-gg~~~~~~~NvVP~~a~~~~diR~~p~~~~e~v~~~i~~~l~~~~~~~~~v~~~~~~~~~~ 367 (456)
T PRK08201 289 TALERTWARPTLELNGVY-GGFQGEGTKTVIPAEAHAKITCRLVPDQDPQEILDLIEAHLQAHTPAGVRVTIRRFDKGPA 367 (456)
T ss_pred HHHHHHHhCCcEEEEeee-cCCCCCCCceEECcceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEECCCcCc
Confidence 112478888887 653 379999999999999999999999999999999886421 1222 22 234566
Q ss_pred ccCCccc-----------cccCCcccccCCCCCccc---ccccccccccCceeccCccc--c-eeecchhhhhhhhhHHH
Q 024502 188 KYVLPDE-----------NIRGRHVLSLHYLTLGRD---DFRIFPLRWQRHKIKFGRLK--C-IFYLSIYKFISNLFSVL 250 (266)
Q Consensus 188 ~~~~~~~-----------~~~g~~~~~~~~~~~gg~---D~~~~~~~~~~~~v~~G~~~--~-~~~~~~~~~~~~~~~~~ 250 (266)
...+++. +.+|... .....|++ |.. |......+.+.|||.. + .+--+.|+-.+++.. .
T Consensus 368 ~~~~~~~~~~~~l~~a~~~~~g~~~---~~~~~gg~~~~~~~-~~~~~gip~v~~GpG~~~~~~H~~nE~v~i~~l~~-~ 442 (456)
T PRK08201 368 FVAPIDHPAIQAAARAYEAVYGTEA---AFTRMGGSIPVVET-FSSQLHIPIVLMGFGLPSENFHAPNEHFHLENFDK-G 442 (456)
T ss_pred eecCCCCHHHHHHHHHHHHHhCCCc---eecCCCCcHHHHHH-HHHHhCCCEEEecCCCCCCCCCCCCCCcCHHHHHH-H
Confidence 6666551 2233321 12233444 444 4444556777788873 3 455678888777654 4
Q ss_pred HHHHHHHHHHh
Q 024502 251 NKSLAAVISRL 261 (266)
Q Consensus 251 ~~~~~~~~~~~ 261 (266)
++.+++++.++
T Consensus 443 ~~~l~~~~~~~ 453 (456)
T PRK08201 443 LRTLVEYWHQL 453 (456)
T ss_pred HHHHHHHHHHh
Confidence 56666666665
No 50
>PRK09104 hypothetical protein; Validated
Probab=99.85 E-value=6.2e-20 Score=169.59 Aligned_cols=252 Identities=16% Similarity=0.097 Sum_probs=166.1
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCC-----CceEEeeeeEEEEEEEEe
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVTG 76 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~v~G 76 (266)
+.|++.+..++++|.|+|++|||.|+ .|++.++++.. +.+++|.+|+.|++.. .++++++|..+++++++|
T Consensus 141 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~iv~E~~~~~~~~~~i~~~~kG~~~~~l~v~g 216 (464)
T PRK09104 141 RAWKAVTGSLPVRVTILFEGEEESGS---PSLVPFLEANA-EELKADVALVCDTGMWDRETPAITTSLRGLVGEEVTITA 216 (464)
T ss_pred HHHHHhcCCCCCcEEEEEECccccCC---ccHHHHHHhhH-HhcCCCEEEEeCCCCCCCCCeEEEeecCCeEEEEEEEEe
Confidence 45666666778899999999999998 68888776532 2345789999996532 467899999999999999
Q ss_pred --cCCCccC-CCCCCCHHHHHHHHHHHHHHhhccC-C-------CCC-------------CCC---c-----------cC
Q 024502 77 --KLFHSGL-PHKAINPLELAMEALKVIQTRFYKD-F-------PPH-------------PKE---Q-----------VY 118 (266)
Q Consensus 77 --~~~Has~-P~~g~nAi~~~a~~i~~l~~~~~~~-~-------~~~-------------~~~---~-----------~~ 118 (266)
+++|+|. |+.+.||+..+++++.+|.+...+- + .+. ... . ..
T Consensus 217 ~~~~~Hss~~~~~g~nai~~~~~~l~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (464)
T PRK09104 217 ADRDLHSGLFGGAAANPIRVLTRILAGLHDETGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGR 296 (464)
T ss_pred CCCCccccccCCccCCHHHHHHHHHHhccCCCCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccH
Confidence 6899996 6889999999999999986521100 0 000 000 0 00
Q ss_pred C----cCCCceEeeEEEecCCC----ccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHh-hccee-ee-ccCCCC
Q 024502 119 G----FETPSTMKPTQWSYPGG----GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN-ENIEK-LD-TRGPVS 187 (266)
Q Consensus 119 ~----~~~~~t~~~g~i~~gg~----~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~-~~~~~-~~-~~~~p~ 187 (266)
. .+...+++++.|+ +|. ..|+||++|++++|+|+++.++.+++.+.|++.+++.. .+..+ +. ....||
T Consensus 297 ~~~~~~~~~~t~~i~~i~-gg~~~~~~~nvvP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~~~~~~~v~~~~~~~~~~ 375 (464)
T PRK09104 297 SVLEQIWSRPTCEINGIW-GGYTGEGFKTVIPAEASAKVSFRLVGGQDPAKIREAFRAYVRARLPADCSVEFHDHGGSPA 375 (464)
T ss_pred HHHHHHhhCCeEEEeccc-cCCCCCCCccEecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEecCCCCc
Confidence 0 0123578999998 774 46999999999999999999999999999999997642 12222 22 224567
Q ss_pred ccCCccc-----------cccCCcccccCCCCCccc-ccccccccccCceeccCcc--c-ceeecchhhhhhhhhHHHHH
Q 024502 188 KYVLPDE-----------NIRGRHVLSLHYLTLGRD-DFRIFPLRWQRHKIKFGRL--K-CIFYLSIYKFISNLFSVLNK 252 (266)
Q Consensus 188 ~~~~~~~-----------~~~g~~~~~~~~~~~gg~-D~~~~~~~~~~~~v~~G~~--~-~~~~~~~~~~~~~~~~~~~~ 252 (266)
...+++. +.++... ......|+. |++.|.+....+.+.|||. . ..+--+.|+-.+++.. ++.
T Consensus 376 ~~~~~~~~~v~~l~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~gip~v~~g~G~~~~~aH~~nE~i~i~~l~~-~~~ 452 (464)
T PRK09104 376 IALPYDSPALAAAKAALSDEWGKPA--VLIGSGGSIPIVGDFKRILGMDSLLVGFGLDDDRIHSPNEKYDLESFHK-GIR 452 (464)
T ss_pred eECCCCCHHHHHHHHHHHHHhCCCc--eecCCCCcHHHHHHHHHHhCCCEEEecCCCCCCCCcCCCCCcCHHHHHH-HHH
Confidence 7666661 2233321 112233332 4677765555555556664 2 3555666666666543 444
Q ss_pred HHHHHHHHh
Q 024502 253 SLAAVISRL 261 (266)
Q Consensus 253 ~~~~~~~~~ 261 (266)
-+.+++.++
T Consensus 453 ~~~~ll~~~ 461 (464)
T PRK09104 453 SWARILAAL 461 (464)
T ss_pred HHHHHHHHh
Confidence 555555544
No 51
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.85 E-value=1.2e-19 Score=165.24 Aligned_cols=242 Identities=22% Similarity=0.238 Sum_probs=165.5
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHcccc-CCCCCCcEEEEeCC----CC-CceEEeeeeEEEEEEEE
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLL-NKLKGGPLYWIDTA----DK-QPCIGTGGMIPWKLHVT 75 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~-~~~~~d~~i~~e~~----~~-~i~~~~~g~~~~~i~v~ 75 (266)
+.|.+.+..++++|.++|++|||+++ .|+..+++.+.. .++.+|+++..|++ .+ .+.++++|..+++|+++
T Consensus 129 ~~l~~~~~~~~~~v~~~~~~dEE~g~---~~~~~~~~~~~~~~~~~~d~~i~~E~~~~~~~~~~~~~~~kG~~~~~v~v~ 205 (409)
T COG0624 129 SALKAAGGELPGDVRLLFTADEESGG---AGGKAYLEEGEEALGIRPDYEIVGEPTLESEGGDIIVVGHKGSLWLEVTVK 205 (409)
T ss_pred HHHHHhCCCCCeEEEEEEEeccccCC---cchHHHHHhcchhhccCCCEEEeCCCCCcccCCCeEEEcceeEEEEEEEEE
Confidence 45666666788999999999999998 688888776532 24677999999982 22 34568999999999999
Q ss_pred ecCCCccC--CCCCCC----HHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEec-------CCCccceeC
Q 024502 76 GKLFHSGL--PHKAIN----PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSY-------PGGGINQIP 142 (266)
Q Consensus 76 G~~~Has~--P~~g~n----Ai~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~-------gg~~~nviP 142 (266)
|+++|+|. |+.+.| |+..+++++..+.++..+... .+.+++++.+.. +|...|+||
T Consensus 206 G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~nviP 274 (409)
T COG0624 206 GKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEGFD-----------GPLGLNVGLILAGPGASVNGGDKVNVIP 274 (409)
T ss_pred eecccccccCCcccccHHHHHHHHHHHHHHHhccccccccc-----------CCccccccccccCCcccccCCccCceec
Confidence 99999998 899999 555555555444432211111 024556665541 333469999
Q ss_pred CeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh--ccee-ee-ccCCCCccCCcc-----------ccccCCcccccCCC
Q 024502 143 GECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE--NIEK-LD-TRGPVSKYVLPD-----------ENIRGRHVLSLHYL 207 (266)
Q Consensus 143 ~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~--~~~~-~~-~~~~p~~~~~~~-----------~~~~g~~~~~~~~~ 207 (266)
++|++.+|+|+.+.++.+++.+.+++.++.... .++. +. ....++...+.+ .+.+|.. .....
T Consensus 275 ~~~~~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~g~~--~~~~~ 352 (409)
T COG0624 275 GEAEATVDIRLLPGEDLDDVLEELEAELRAIAPKEGVEYEIEPGLGEPPLPVPGDSPLVAALAEAAEELLGLP--PEVST 352 (409)
T ss_pred ceEEEEEEEecCCcCCHHHHHHHHHHHHHHhccccCceEEeccccCCccccCCCchHHHHHHHHHHHHhhCCC--ceecC
Confidence 999999999999999999999999999887644 2332 21 123444444443 1223443 22233
Q ss_pred CCcccccccccccccCceeccCccc-ce-eecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 208 TLGRDDFRIFPLRWQRHKIKFGRLK-CI-FYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 208 ~~gg~D~~~~~~~~~~~~v~~G~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
..+++|+.++.... .+.+.|||.. .. +--..|+-.+++... .+-+.++|.+|
T Consensus 353 ~G~~~da~~~~~~~-~~~~~fgp~~~~~~H~~~E~v~i~~l~~~-~~~~~~~l~~l 406 (409)
T COG0624 353 GGGTHDARFFARLG-IPAVIFGPGDIGLAHQPNEYVELEDLVKG-AKVLARLLYEL 406 (409)
T ss_pred CCCcchHHHHHhcC-CeeEEECCCCcccccCCCceeeHHHHHHH-HHHHHHHHHHH
Confidence 44669999988765 3499999988 44 447888888887764 44455555544
No 52
>PRK07907 hypothetical protein; Provisional
Probab=99.84 E-value=2.8e-19 Score=164.58 Aligned_cols=246 Identities=11% Similarity=0.047 Sum_probs=166.2
Q ss_pred cCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCC-----CceEEeeeeEEEEEEEE--ecCCC
Q 024502 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADK-----QPCIGTGGMIPWKLHVT--GKLFH 80 (266)
Q Consensus 8 ~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~-----~i~~~~~g~~~~~i~v~--G~~~H 80 (266)
+..++++|.|+++.|||+|+ .|++.+++... +.+++|++++.|++.. .+.++++|..+++++++ |+++|
T Consensus 140 ~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~-~~~~~d~~iv~E~~~~~~~~p~i~~~~kG~~~~~l~v~~~G~~~H 215 (449)
T PRK07907 140 GGDLPVGVTVFVEGEEEMGS---PSLERLLAEHP-DLLAADVIVIADSGNWSVGVPALTTSLRGNADVVVTVRTLEHAVH 215 (449)
T ss_pred ccCCCCcEEEEEEcCcccCC---ccHHHHHHhch-HhhcCCEEEEecCCcCCCCCeEEEEecCCcEEEEEEEEECCCCCC
Confidence 34567899999999999998 79999998631 2356789999998754 35678999999999998 89999
Q ss_pred ccCC-CCCCCHHHHHHHHHHHHHHhhccC----CCCCCCCccC---------------------------CcCCCceEee
Q 024502 81 SGLP-HKAINPLELAMEALKVIQTRFYKD----FPPHPKEQVY---------------------------GFETPSTMKP 128 (266)
Q Consensus 81 as~P-~~g~nAi~~~a~~i~~l~~~~~~~----~~~~~~~~~~---------------------------~~~~~~t~~~ 128 (266)
+|.| ..+.||+..+++++.+|.+...+. +......... ..+...++++
T Consensus 216 ss~~~~~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i 295 (449)
T PRK07907 216 SGQFGGAAPDALTALVRLLATLHDEDGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITV 295 (449)
T ss_pred CccccccCCCHHHHHHHHHHhhCCCCCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEE
Confidence 9975 668999999999999987532110 0000000000 0022457888
Q ss_pred EEEecC---CCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh-ccee-ee-ccCCCCccCCccc--------
Q 024502 129 TQWSYP---GGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE-NIEK-LD-TRGPVSKYVLPDE-------- 194 (266)
Q Consensus 129 g~i~~g---g~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~-~~~~-~~-~~~~p~~~~~~~~-------- 194 (266)
+.|+ + |...|+||++|++++|+|+.+.++.+++.+.|++.+++... ...+ +. ...++|...+++.
T Consensus 296 ~~i~-~~~~g~~~nvIP~~a~~~~diR~~p~~~~e~v~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~ 374 (449)
T PRK07907 296 IGID-APPVAGASNALPPSARARLSLRVAPGQDAAEAQDALVAHLEAHAPWGAHVTVERGDAGQPFAADASGPAYDAARA 374 (449)
T ss_pred Eeee-cCCCCCCCCEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEECCCcCceeCCCCCHHHHHHHH
Confidence 8887 4 46789999999999999999999999999999999876422 2221 22 2245666655551
Q ss_pred ---cccCCcccccCCCCCcccc-ccccccccc-CceeccCccc--c-eeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 195 ---NIRGRHVLSLHYLTLGRDD-FRIFPLRWQ-RHKIKFGRLK--C-IFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 195 ---~~~g~~~~~~~~~~~gg~D-~~~~~~~~~-~~~v~~G~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
+.+|.... .....|+.+ .+.|.+..+ .+.+.|||.. + .+--+.|+..+++.. +++-++++|.++
T Consensus 375 a~~~~~g~~~~--~~~~~g~~~~~~~~~~~~~~~~~v~~Gpg~~~~~aH~~nE~i~i~~l~~-~~~~~~~~l~~~ 446 (449)
T PRK07907 375 AMREAWGKDPV--DMGMGGSIPFIAELQEAFPQAEILVTGVEDPKTRAHSPNESVHLGELER-AAVAEALLLARL 446 (449)
T ss_pred HHHHHhCCCce--ecCCCCcHHHHHHHHHhcCCCcEEEeccCCCCCCCcCCCCCcCHHHHHH-HHHHHHHHHHHH
Confidence 23443211 122233333 234444343 4677899874 3 455688888877664 566677777665
No 53
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.83 E-value=5.4e-19 Score=163.23 Aligned_cols=240 Identities=13% Similarity=0.027 Sum_probs=153.0
Q ss_pred ChhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEE---------EEeCCCCCc-----------
Q 024502 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLY---------WIDTADKQP----------- 60 (266)
Q Consensus 1 ~k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i---------~~e~~~~~i----------- 60 (266)
+++|++.+..++++|+|+|+.|||+|+ .|++.+++.+. .+|+++ ..|+....+
T Consensus 129 ~~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~~~~~~----~~d~~~~~d~~~~~~~ge~g~~~~~~~~~~~~~~~ 201 (466)
T TIGR01886 129 MKILKELGLPPSKKIRFVVGTNEETGW---VDMDYYFKHEE----TPDFGFSPDAEFPIINGEKGNFTLELSFKGDNKGD 201 (466)
T ss_pred HHHHHHhCCCCCCCEEEEEECccccCc---ccHHHHHhcCc----CCCEEEECCCCceeEEEecceEEEEEEEecCCCCc
Confidence 357788888899999999999999998 79999998754 134432 223221110
Q ss_pred ----------------------e---------------EEeeee---------EEEEEEEEecCCCccCCCCCCCHHHHH
Q 024502 61 ----------------------C---------------IGTGGM---------IPWKLHVTGKLFHSGLPHKAINPLELA 94 (266)
Q Consensus 61 ----------------------~---------------~~~~g~---------~~~~i~v~G~~~Has~P~~g~nAi~~~ 94 (266)
. .+++|. .+++|+++|+++|+|.|+.|+|||..+
T Consensus 202 ~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~ 281 (466)
T TIGR01886 202 YVLDSFKAGLAENMVPQVARAVISGPDAEALKAAYESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFL 281 (466)
T ss_pred eeEEEEEcCCcCCccCCeeEEEEecCCHHHHHHHHHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHH
Confidence 0 012332 278899999999999999999999999
Q ss_pred HHHHHHH----------HHhhccCCC-C----C-CCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCC
Q 024502 95 MEALKVI----------QTRFYKDFP-P----H-PKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYN 158 (266)
Q Consensus 95 a~~i~~l----------~~~~~~~~~-~----~-~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~ 158 (266)
++++.++ +.+ .+.+. . . ........++.+++|+|.|+ +|.. | ++|++.+|+|++++++
T Consensus 282 ~~~l~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~g~~S~nvgvI~-gG~~-~---~~~~l~iD~R~~Pge~ 355 (466)
T TIGR01886 282 ALFLNQYAFAGGAKNFIHFL-AEVEHEDFYGEKLGIAFHDELMGDLAMNAGMFD-FDHA-N---KESKLLLNFRYPQGTS 355 (466)
T ss_pred HHHHHhccCChhHHHHHHHH-HHhcCCCCCcccCCCcccccCcCceEEEeEEEE-EecC-C---ceEEEEEEEecCCCCC
Confidence 9988873 111 11100 0 0 00011123456799999999 7654 3 7999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcceeeeccCCCCccCCccc-----------cccCCcccccCCCCCcccccccccccccCceec
Q 024502 159 VTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIK 227 (266)
Q Consensus 159 ~~~v~~~i~~~i~~~~~~~~~~~~~~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~ 227 (266)
.+++.++|++.+... ..++ +.....+|...+++. +..|... ....+.+++|+++|... ...+.
T Consensus 356 ~eev~~eI~~~i~~~-~~v~-~~~~~~~P~~~~~ds~lv~~l~~a~~~v~G~~~--~~~~~~ggTDa~~~~~~--i~~gv 429 (466)
T TIGR01886 356 PETMQKQVLDKFGGI-VDVT-YNGHFEEPHYVPGSDPLVQTLLKVYEKHTGKKG--HEVIIGGGTYGRLLERG--VAYGA 429 (466)
T ss_pred HHHHHHHHHHHHhcc-cEEE-EecccCCCcccCCCCHHHHHHHHHHHHHhCCCC--ceeeecCccHHHhcccc--ccccc
Confidence 999999999988752 1222 111123444455441 2233321 12346788999998632 22233
Q ss_pred cCccc--ceeecchhhhhhhhhHHHHHHHHHHHHH
Q 024502 228 FGRLK--CIFYLSIYKFISNLFSVLNKSLAAVISR 260 (266)
Q Consensus 228 ~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
|||.. -.+..+.|+-.+++...-..+ ++++.+
T Consensus 430 ~gPG~~~~aH~~dE~V~i~el~~a~~iy-~~~i~~ 463 (466)
T TIGR01886 430 MFEGGPDVMHQANEFMMLDDLILAAAIY-AEAIYE 463 (466)
T ss_pred ccCCCCCCccCCCcceEHHHHHHHHHHH-HHHHHH
Confidence 44765 246668888888877655443 344433
No 54
>PRK07079 hypothetical protein; Provisional
Probab=99.83 E-value=3.6e-19 Score=164.69 Aligned_cols=246 Identities=16% Similarity=0.105 Sum_probs=163.2
Q ss_pred cCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCC---C--CceEEeeeeEEEEEEEEec--CCC
Q 024502 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD---K--QPCIGTGGMIPWKLHVTGK--LFH 80 (266)
Q Consensus 8 ~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~---~--~i~~~~~g~~~~~i~v~G~--~~H 80 (266)
+..+.++|.|+|++|||+|+ .|++.++++.. ..+++|++++.|++. + .++++++|..+++|+++|+ +.|
T Consensus 147 ~~~~~~~i~~~~~~dEE~g~---~G~~~l~~~~~-~~~~~d~~iv~e~~~~~~~~~~i~~g~kG~~~~~v~v~G~~~~~h 222 (469)
T PRK07079 147 GGRLGFNVKLLIEMGEEIGS---PGLAEVCRQHR-EALAADVLIASDGPRLSAERPTLFLGSRGAVNFRLRVNLRDGAHH 222 (469)
T ss_pred CCCCCCCEEEEEECccccCC---ccHHHHHHHhH-HhcCCCEEEEeCCCccCCCCeEEEEecceEEEEEEEEeeCCCCCC
Confidence 35788999999999999998 79999998642 224578999998753 2 3678999999999999998 345
Q ss_pred ccCCCCC--CCHHHHHHHHHHHHHHhhccC--------------------CCCCCCC--c---------c----CCcCCC
Q 024502 81 SGLPHKA--INPLELAMEALKVIQTRFYKD--------------------FPPHPKE--Q---------V----YGFETP 123 (266)
Q Consensus 81 as~P~~g--~nAi~~~a~~i~~l~~~~~~~--------------------~~~~~~~--~---------~----~~~~~~ 123 (266)
++ ++.| .||+..++++|.++.+...+. +...... . . ...+..
T Consensus 223 s~-~~~g~~~nai~~l~~ai~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (469)
T PRK07079 223 SG-NWGGLLRNPGTVLAHAIASLVDARGRIQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTPAERVFGW 301 (469)
T ss_pred CC-ccccccCCHHHHHHHHHHHhCCCCCCEecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCHHHHHhhC
Confidence 55 4444 699999999999885421000 0000000 0 0 001123
Q ss_pred ceEeeEEEecCCC---ccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh-cceeeeccCCCCccCCccc-----
Q 024502 124 STMKPTQWSYPGG---GINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE-NIEKLDTRGPVSKYVLPDE----- 194 (266)
Q Consensus 124 ~t~~~g~i~~gg~---~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~-~~~~~~~~~~p~~~~~~~~----- 194 (266)
.+++++.|+ +|. ..|+||++|++++|+|++++++.+++.++|++.+++... .+++......+|...+++.
T Consensus 302 ~t~nv~~i~-gG~~~~~~NvVP~~a~~~vdiR~~P~~~~e~v~~~l~~~i~~~~~~~v~~~~~~~~~p~~~~~~~~~v~~ 380 (469)
T PRK07079 302 NTLEVLAFK-TGNPDAPVNAIPGSARAVCQLRFVVGTDWENLAPHLRAHLDAHGFPMVEVTVERGSPATRLDPDDPWVRW 380 (469)
T ss_pred CceEEEeee-cCCCCCcceEecCceEEEEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCCceecCCCCHHHHH
Confidence 478999998 774 589999999999999999999999999999999987532 2332112345566555551
Q ss_pred ------cccCCcccccCCCCCcccccccccccccCceeccCcc--c-ceeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 195 ------NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRL--K-CIFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 195 ------~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
+..|.. ........|++|.++|.+....+.+.||+. + ..+--+.|+..+++.. ++..+.+++.++
T Consensus 381 l~~a~~~~~g~~-~~~~~~~~g~~d~~~~~~~~giP~v~~g~~~~~~~~H~~dE~v~l~~l~~-~~~~~~~~~~~~ 454 (469)
T PRK07079 381 ALASIARTTGKK-PALLPNLGGSLPNDVFADILGLPTLWVPHSYPACSQHAPNEHLLASVARE-GLQIMAGLFWDL 454 (469)
T ss_pred HHHHHHHHhCCC-CceecCCCcchhHHHHHHHhCCCEEEecCCCCCccCcCCCCCCCHHHHHH-HHHHHHHHHHHH
Confidence 123322 111122445668888876555566666432 2 3465678888777654 455566666655
No 55
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.83 E-value=6.4e-20 Score=166.96 Aligned_cols=223 Identities=14% Similarity=0.073 Sum_probs=147.6
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCC-CCceEEeeeeEEEEEEEEecCCC
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGTGGMIPWKLHVTGKLFH 80 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~-~~i~~~~~g~~~~~i~v~G~~~H 80 (266)
++|++.+..++++|+|+|++|||+| .|++.++.++ ++.|..+..++.+ +.+.+...|..+++|+++|+++|
T Consensus 155 ~~L~e~~~~~~g~I~~~ft~dEE~g----~Ga~~l~~~~----~~~~~~~~i~gep~g~i~~~~~g~~~~~I~v~Gk~aH 226 (410)
T TIGR01882 155 DYLINHPEIKHGTIRVAFTPDEEIG----RGAHKFDVKD----FNADFAYTVDGGPLGELEYETFSAAAAKITIQGNNVH 226 (410)
T ss_pred HHHHhCCCCCCCCEEEEEECcccCC----cCcchhhhhh----cCccEEEEeCCCCCCeEEEccccceEEEEEEEEEecC
Confidence 5666654446899999999999986 5888886543 2334444333322 34566667889999999999999
Q ss_pred ccCC-CCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCH
Q 024502 81 SGLP-HKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNV 159 (266)
Q Consensus 81 as~P-~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~ 159 (266)
++.+ +.+.||+..+.+++..+.... .+. .++.+.+.++ ++ ..|.+|++|++.+|+|+.+.++.
T Consensus 227 a~~~~~~g~nAi~~a~~~~~~l~~~~----~~~----------~t~~~~g~i~-~g-~i~giPd~a~l~~diR~~~~e~~ 290 (410)
T TIGR01882 227 PGTAKGKMINAAQIAIDLHNLLPEDD----RPE----------YTEGREGFFH-LL-SIDGTVEEAKLHYIIRDFEKENF 290 (410)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCcC----CCc----------cccceeEEEE-EE-eEEEecCEEEEEEEEecCCHHHH
Confidence 9965 689999999888866554321 110 1111234454 33 46779999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcce---e-ee-ccCCC--Ccc--CCcc-----c---cccCCcccccCCCCCccccccccccccc
Q 024502 160 TDVMKRLQEYVDDINENIE---K-LD-TRGPV--SKY--VLPD-----E---NIRGRHVLSLHYLTLGRDDFRIFPLRWQ 222 (266)
Q Consensus 160 ~~v~~~i~~~i~~~~~~~~---~-~~-~~~~p--~~~--~~~~-----~---~~~g~~~~~~~~~~~gg~D~~~~~~~~~ 222 (266)
+++.++|++++++.+.... + ++ ...++ +.. +++. . +.+|.. ....++.||+|+++|+. ..
T Consensus 291 e~i~~~i~~i~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~lv~~~~~a~~~~G~~--~~~~~~~ggtDa~~~~~-~G 367 (410)
T TIGR01882 291 QERKELMKRIVEKMNNEYGQDRIKLDMNDQYYNMAEKIEKVMEIVDIAKQAMENLGIE--PKISPIRGGTDGSQLSY-MG 367 (410)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEEEeeecChhhccCCCHHHHHHHHHHHHHhCCC--CcccccceechHHHHHh-CC
Confidence 9999999999988754321 1 22 12222 222 2322 1 123322 12245689999999975 45
Q ss_pred CceeccCccc-ceeecchhhhhhhhhHHHH
Q 024502 223 RHKIKFGRLK-CIFYLSIYKFISNLFSVLN 251 (266)
Q Consensus 223 ~~~v~~G~~~-~~~~~~~~~~~~~~~~~~~ 251 (266)
.+.+.+||.. ..+....|+-.+++...--
T Consensus 368 ip~~~~G~G~~~aHt~dE~v~i~~l~~~~~ 397 (410)
T TIGR01882 368 LPTPNIFAGGENMHGRFEYISVDNMVKAVD 397 (410)
T ss_pred CCCCeEcCCcccCcCCceEEEHHHHHHHHH
Confidence 6677788866 4566778877777765443
No 56
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.82 E-value=3.8e-19 Score=164.42 Aligned_cols=141 Identities=21% Similarity=0.255 Sum_probs=109.7
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCC-CCceEEe----------------
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD-KQPCIGT---------------- 64 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~-~~i~~~~---------------- 64 (266)
.+|++.+. .+++|.++|++|||+|+ .|++.+... . .++|++++.|++. +.+++++
T Consensus 125 ~~l~~~~~-~~~~i~~l~t~dEE~G~---~ga~~l~~~-~---~~~~~~i~~e~~~~g~l~~g~~G~~~~~~~~~~~r~~ 196 (485)
T PRK15026 125 AVLADENV-VHGPLEVLLTMTEEAGM---DGAFGLQSN-W---LQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREA 196 (485)
T ss_pred HHHHhCCC-CCCCEEEEEEcccccCc---HhHHHhhhc-c---CCcCEEEEeCCCCCCeEEEeCCCcceEEEEEEEEEEe
Confidence 34555553 48899999999999998 799998652 2 3568999999874 4454333
Q ss_pred --eeeEEEEEEEEe-cCCCcc-CCCCCC-CHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccc
Q 024502 65 --GGMIPWKLHVTG-KLFHSG-LPHKAI-NPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGIN 139 (266)
Q Consensus 65 --~g~~~~~i~v~G-~~~Has-~P~~g~-nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~n 139 (266)
+|..+++|+++| ++|||+ .|++|+ |||..+++++.++.. .++++++.|+ ||+..|
T Consensus 197 ~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~~~-------------------~~~~~v~~i~-GG~~~N 256 (485)
T PRK15026 197 VPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAE-------------------ELDLRLIDFN-GGTLRN 256 (485)
T ss_pred cCCCceEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHhHh-------------------hCCeEEEEEe-CCCccC
Confidence 466789999999 999999 799999 999999999987431 2468999999 999999
Q ss_pred eeCCeEEEEEEEeCCCCCCHHHHHHHHHHHH
Q 024502 140 QIPGECTVSGDVRLTPFYNVTDVMKRLQEYV 170 (266)
Q Consensus 140 viP~~a~~~~diR~~~~~~~~~v~~~i~~~i 170 (266)
+||++|++.+++|....+..+.+.+.+.+.+
T Consensus 257 aIp~~a~a~i~~~~~~~~~~~~~~~~~~~~~ 287 (485)
T PRK15026 257 AIPREAFATIAVAADKVDALKSLVNTYQEIL 287 (485)
T ss_pred CCCCCcEEEEEEChhHHHHHHHHHHHHHHHH
Confidence 9999999999999876555555555444433
No 57
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.81 E-value=6.5e-19 Score=162.87 Aligned_cols=241 Identities=16% Similarity=0.129 Sum_probs=151.8
Q ss_pred ChhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccC--CCCCCc---EEEEeCCC------------------
Q 024502 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP---LYWIDTAD------------------ 57 (266)
Q Consensus 1 ~k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~--~~~~d~---~i~~e~~~------------------ 57 (266)
|+.|++.+..++++|.|+|++|||+|+ .|++++++..... ++.+|. ++..|+..
T Consensus 130 l~~l~~~g~~~~~~i~l~~~~DEE~g~---~G~~~l~~~~~~~~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~ 206 (466)
T PRK07318 130 LKIIKELGLPLSKKVRFIVGTDEESGW---KCMDYYFEHEEAPDFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVL 206 (466)
T ss_pred HHHHHHcCCCCCccEEEEEEcccccCc---hhHHHHHHhCCCCCEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCcee
Confidence 356777777888999999999999998 7999999864211 111222 33334311
Q ss_pred -----C-----Cc------------------------eEEeeeeE-----EEEEEEEecCCCccCCCCCCCHHHHHHHHH
Q 024502 58 -----K-----QP------------------------CIGTGGMI-----PWKLHVTGKLFHSGLPHKAINPLELAMEAL 98 (266)
Q Consensus 58 -----~-----~i------------------------~~~~~g~~-----~~~i~v~G~~~Has~P~~g~nAi~~~a~~i 98 (266)
+ .+ ..+++|.. +++|+++|+++|+|.|+.|.|||..+++++
T Consensus 207 ~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i 286 (466)
T PRK07318 207 VSFKSGLRENMVPDSAEAVITGDDLDDLIAAFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFL 286 (466)
T ss_pred EEEEcCccceecCcccEEEEecCCHHHHHHHHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHH
Confidence 0 00 01345543 799999999999999999999999999999
Q ss_pred HHHHH------hh---ccCCC----CC--CCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHH
Q 024502 99 KVIQT------RF---YKDFP----PH--PKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVM 163 (266)
Q Consensus 99 ~~l~~------~~---~~~~~----~~--~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~ 163 (266)
.+|+. ++ ..... .. .........+..++++|.|+ +|... +|++.+|+|+++.++.+++.
T Consensus 287 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~nvg~i~-gg~~~-----~~~~~iDiR~~p~~~~~~v~ 360 (466)
T PRK07318 287 NQLNLDGDAKAFLDFAAEYLHEDTRGEKLGIAYEDDVMGDLTMNVGVFS-FDEEK-----GGTLGLNFRYPVGTDFEKIK 360 (466)
T ss_pred HhccCchhHHHHHHHHHHhcCCCCCcccCCCcccCCCccCeEEEeeEEE-EecCc-----EEEEEEEEeCCCCCCHHHHH
Confidence 98863 10 00000 00 00000111234688999998 55321 69999999999999999999
Q ss_pred HHHHHHHHHHhhcceeeeccCCCCccCCccc-----------cccCCcccccCCCCCcccccccccccccCceeccCccc
Q 024502 164 KRLQEYVDDINENIEKLDTRGPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK 232 (266)
Q Consensus 164 ~~i~~~i~~~~~~~~~~~~~~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~ 232 (266)
++|++.+++.. +++.....+||...+++. +..|.. .....+.||+|+++|.. .+.|||..
T Consensus 361 ~~i~~~~~~~~--~~~~~~~~~~p~~~~~d~~lv~~l~~a~~~~~g~~--~~~~~~~ggtDa~~~~~-----~i~~Gp~~ 431 (466)
T PRK07318 361 AKLEKLIGVTG--VELSEHEHQKPHYVPKDDPLVKTLLKVYEKQTGLK--GEEQVIGGGTYARLLKR-----GVAFGAMF 431 (466)
T ss_pred HHHHHHHHhcC--eEEEEccCCCceeeCCCCHHHHHHHHHHHHHhCCC--CCeeEEcchHhHhhCCC-----eEEeCCCC
Confidence 99999887643 332112345564444441 123322 12234678899998853 46788652
Q ss_pred -----ceeecchhhhhhhhhHHHHHHHHHHHHH
Q 024502 233 -----CIFYLSIYKFISNLFSVLNKSLAAVISR 260 (266)
Q Consensus 233 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (266)
..+.-..|+..+++...- .-+.+++.+
T Consensus 432 pg~~~~aH~~dE~v~i~~l~~~~-~v~~~~l~~ 463 (466)
T PRK07318 432 PGSEDTMHQANEYIEIDDLIKAA-AIYAEAIYE 463 (466)
T ss_pred CCCCCCCcCCCcceeHHHHHHHH-HHHHHHHHH
Confidence 256677777777765543 334444444
No 58
>PRK06156 hypothetical protein; Provisional
Probab=99.80 E-value=4.8e-18 Score=158.90 Aligned_cols=242 Identities=14% Similarity=0.136 Sum_probs=152.8
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCC--CCCc---EEEEeCCC-------------------
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKL--KGGP---LYWIDTAD------------------- 57 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~--~~d~---~i~~e~~~------------------- 57 (266)
+.|.+.+.+++++|.|+|+.|||.|+ .|++.+++.+...++ .+|. ++..|++.
T Consensus 167 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~G~~~~~~~~~~~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l 243 (520)
T PRK06156 167 KAIKDSGLPLARRIELLVYTTEETDG---DPLKYYLERYTPPDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEI 243 (520)
T ss_pred HHHHHcCCCCCceEEEEEecccccCc---hhHHHHHHhcCCCCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeE
Confidence 45677777788999999999999998 799999876532111 1121 23444321
Q ss_pred -----CC----c---------------------------eEEeeeeE---------EEEEEEEecCCCccCCCCCCCHHH
Q 024502 58 -----KQ----P---------------------------CIGTGGMI---------PWKLHVTGKLFHSGLPHKAINPLE 92 (266)
Q Consensus 58 -----~~----i---------------------------~~~~~g~~---------~~~i~v~G~~~Has~P~~g~nAi~ 92 (266)
|. + ..+++|.. +++|+++|+++|+|.|+.|.|||.
T Consensus 244 ~~~~gG~~~n~ip~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~ 323 (520)
T PRK06156 244 VAMTGGAFANQIPQTAVATLSGGDPAALAAALQAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVT 323 (520)
T ss_pred EEEEcCCcCCCCCCccEEEEecCCHHHHHHHHHHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHH
Confidence 00 0 00112333 899999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC------------CCC-CCC-----CccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCC
Q 024502 93 LAMEALKVIQTRFYKD------------FPP-HPK-----EQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLT 154 (266)
Q Consensus 93 ~~a~~i~~l~~~~~~~------------~~~-~~~-----~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~ 154 (266)
.+++++.++++..... ... ... .....+.+..+++++.|. +|. ++|++++|+|++
T Consensus 324 ~aa~ii~~L~~~l~~~~~~~~~~~i~~~~~~~~~g~~~g~~~~~~~~g~~t~~~~~I~-gg~------~~~~l~iDiR~~ 396 (520)
T PRK06156 324 RLALFLQSLDGDLPHNHAADAARYINDLVGLDYLGEKFGVAYKDDFMGPLTLSPTVVG-QDD------KGTEVTVNLRRP 396 (520)
T ss_pred HHHHHHHhccccccchhHHHHHHHHHHhhCCCCccCcCCccccCCCccCcEEeeeEEE-EeC------CeEEEEEEeeCC
Confidence 9999999986521000 000 000 001122234567777776 443 689999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc--cee-eeccCCCCccCCccc-----------cccCCcccccCCCCCccccccccccc
Q 024502 155 PFYNVTDVMKRLQEYVDDINEN--IEK-LDTRGPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRDDFRIFPLR 220 (266)
Q Consensus 155 ~~~~~~~v~~~i~~~i~~~~~~--~~~-~~~~~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~D~~~~~~~ 220 (266)
++++.+++.++|++.++++... +++ +.....+|...+++. +.+|.. .....+.|++|+++|.
T Consensus 397 p~~~~eev~~~I~~~i~~~~~~~gv~ve~~~~~~~p~~~~~d~~lv~~l~~a~~~~~G~~--~~~~~~~ggTDa~~~~-- 472 (520)
T PRK06156 397 VGKTPELLKGEIADALAAWQAKHQVALDIDYYWGEPMVRDPKGPWLKTLLDVFGHFTGLD--AKPVAIAGSTNAKLFP-- 472 (520)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcCceEEEeecCCCceeeCCCCHHHHHHHHHHHHHhCCC--CceeeecChhhhhhCC--
Confidence 9999999999999998875432 222 221223444444441 223332 1224467889998773
Q ss_pred ccCceeccCccc-c----eeecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 221 WQRHKIKFGRLK-C----IFYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 221 ~~~~~v~~G~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
+.+.|||.. . .+.-..|+-.+++......+ ++++.++
T Consensus 473 ---~~v~fGP~~~g~~~~aHt~dE~V~ie~l~~~~~i~-~~~l~~l 514 (520)
T PRK06156 473 ---NAVSFGPAMPGVKYTGHTENEFKTVEQFMLDLQMY-TEMLIRI 514 (520)
T ss_pred ---ccEEEcCCCCCCCCCCcCcccCCCHHHHHHHHHHH-HHHHHHH
Confidence 489999962 1 46668888888777655444 4444444
No 59
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.80 E-value=2.2e-18 Score=159.72 Aligned_cols=221 Identities=18% Similarity=0.139 Sum_probs=145.3
Q ss_pred CCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEE-----------eCCCCCc------eEE--eeeeEEE
Q 024502 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWI-----------DTADKQP------CIG--TGGMIPW 70 (266)
Q Consensus 10 ~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~-----------e~~~~~i------~~~--~~g~~~~ 70 (266)
.++++|.++|++|||+|+ .|++.+.+... ..+.++.. ++..... .+. ++|..++
T Consensus 126 ~~~~~i~~~~~~dEE~g~---~Gs~~l~~~~~----~~~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~ 198 (477)
T TIGR01893 126 LKHPPLELLFTVDEETGM---DGALGLDENWL----SGKILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGY 198 (477)
T ss_pred CCCCCEEEEEEeccccCc---hhhhhcChhhc----CCcEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEE
Confidence 356799999999999987 79999976432 22333333 3322111 111 4788999
Q ss_pred EEEEEe-cCCCcc-CCCCC-CCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEE
Q 024502 71 KLHVTG-KLFHSG-LPHKA-INPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTV 147 (266)
Q Consensus 71 ~i~v~G-~~~Has-~P~~g-~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~ 147 (266)
+|+++| +++|++ .|+.+ .||+.++++++.++.... .++++.+. ||...|+||++|++
T Consensus 199 ~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~~-------------------~~~v~~~~-gg~~~N~ip~~~~~ 258 (477)
T TIGR01893 199 QISLKGLKGGHSGADIHKGRANANKLMARVLNELKENL-------------------NFRLSDIK-GGSKRNAIPREAKA 258 (477)
T ss_pred EEEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhhhcC-------------------CeEEEEEe-CCCcccccCCceEE
Confidence 999999 999997 58888 599999999999887531 14567776 88888888888888
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHh-----------------------------------------------------
Q 024502 148 SGDVRLTPFYNVTDVMKRLQEYVDDIN----------------------------------------------------- 174 (266)
Q Consensus 148 ~~diR~~~~~~~~~v~~~i~~~i~~~~----------------------------------------------------- 174 (266)
++|+|..+.+..+.+.+.+.+.+.+..
T Consensus 259 ~~diR~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~ 338 (477)
T TIGR01893 259 LIAIDENDVKLLENLVKNFQSKFKSEYSELEPNITIEVSKRENSVKVFSENTTDKLINALNGLPNGVQSVSDEEPGLVES 338 (477)
T ss_pred EEEEChhHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEECCCcccccCHHHHHHHHHHHHHCCccceeeccCCCCeEEe
Confidence 888776655555555554444433222
Q ss_pred -----------------------------------------hcceeee-ccCCCCccCCccc-----------cccCCcc
Q 024502 175 -----------------------------------------ENIEKLD-TRGPVSKYVLPDE-----------NIRGRHV 201 (266)
Q Consensus 175 -----------------------------------------~~~~~~~-~~~~p~~~~~~~~-----------~~~g~~~ 201 (266)
.+++ ++ ...+||...+++. +..|..
T Consensus 339 t~n~g~i~~~~~~~~~~i~~R~~~~~~~~~i~~~i~~~~~~~~~~-v~~~~~~~p~~~~~d~plv~~l~~a~~~~~g~~- 416 (477)
T TIGR01893 339 SLNLGVVKTKENKVIFTFLIRSSVESDKDYVTEKIESIAKLAGAR-VEVSAGYPSWQPDPQSNLLDTARKVYSEMFGED- 416 (477)
T ss_pred eeeEEEEEEcCCEEEEEEEeCCCCchhHHHHHHHHHHHhhhcCeE-EEEecCCCcccCCCCCHHHHHHHHHHHHHHCCC-
Confidence 0111 11 2356777766661 233432
Q ss_pred cccCCCCCccccccccccccc-CceeccCcccce-eecchhhhhhhhhHHHHHHHHHHHHHh
Q 024502 202 LSLHYLTLGRDDFRIFPLRWQ-RHKIKFGRLKCI-FYLSIYKFISNLFSVLNKSLAAVISRL 261 (266)
Q Consensus 202 ~~~~~~~~gg~D~~~~~~~~~-~~~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (266)
.....+.||.|+++|.+.++ .+.+.|||.... +--+.|+..+++.. +++.+++++.++
T Consensus 417 -~~~~~~~Ggtd~~~~~~~~~~i~~v~~Gp~~~~~H~~nE~i~i~~l~~-~~~~~~~ll~~~ 476 (477)
T TIGR01893 417 -PEVKVIHAGLECGIISSKIPDIDMISIGPNIYDPHSPNERVSISSVEK-VWDFLVKVLERL 476 (477)
T ss_pred -CeEEEeecCccHHHHHhhCCCceEEEeCCCCCCCCCCCceeeHHHHHH-HHHHHHHHHHhc
Confidence 11245678899999987664 346999997744 44578888877664 456667777654
No 60
>PRK07205 hypothetical protein; Provisional
Probab=99.75 E-value=1e-16 Score=147.46 Aligned_cols=240 Identities=13% Similarity=0.095 Sum_probs=143.9
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccC--CCCCCc--------------EEEEeCCCCC------
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP--------------LYWIDTADKQ------ 59 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~--~~~~d~--------------~i~~e~~~~~------ 59 (266)
+.|++.+..++++|.|+|+.|||+|+ .|++.+++..... .+.+|. .+..++++..
T Consensus 129 ~~l~~~~~~~~~~i~l~~~~dEE~g~---~g~~~~~~~~~~~~~~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~ 205 (444)
T PRK07205 129 KALLDAGVQFNKRIRFIFGTDEETLW---RCMNRYNEVEEQATMGFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQ 205 (444)
T ss_pred HHHHHcCCCCCCcEEEEEECCcccCc---ccHHHHHhCCCCCCeeECCCCCCceEEEEeceEEEEEEeCCccceEEecCC
Confidence 46677777889999999999999998 7888888642111 122231 2333443210
Q ss_pred -----ceEE-eeee------------------EEEEEEEEecCCCccCCCCCCCHHHHHHHHHHHHHHh-----hccCCC
Q 024502 60 -----PCIG-TGGM------------------IPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTR-----FYKDFP 110 (266)
Q Consensus 60 -----i~~~-~~g~------------------~~~~i~v~G~~~Has~P~~g~nAi~~~a~~i~~l~~~-----~~~~~~ 110 (266)
+..+ ++|. .+.+|+++|+++|+|.|+.|.|||..+++++.+++.. +.+.+.
T Consensus 206 ~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~ 285 (444)
T PRK07205 206 AFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKENEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPHPALDFLANVIG 285 (444)
T ss_pred cccccCceeEEEecCHHHHHHHHHhcCceEeecCcEEEEEeEEcccCCCccCcCHHHHHHHHHHhccHHHHHHHHHHhcC
Confidence 0011 2221 2348999999999999999999999999999888642 111110
Q ss_pred CCC------CCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcceeeeccC
Q 024502 111 PHP------KEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRG 184 (266)
Q Consensus 111 ~~~------~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~~~~~~~~~ 184 (266)
... ........+..++|+|. .|++|++|++++|+|+++.++.+++.+.|++.+++.. +++.....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~t~nvg~-------~nvvP~~a~~~ld~R~~p~~~~e~v~~~i~~~~~~~~--v~~~~~~~ 356 (444)
T PRK07205 286 EDATGLNIFGDIEDEPSGKLSFNIAG-------LTITKEKSEIRIDIRIPVLADKEKLVQQLSQKAQEYG--LTYEEFDY 356 (444)
T ss_pred CCCccccCCccccCCCcCCceEEeEE-------EEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC--cEEEEecC
Confidence 000 00001112234566654 4799999999999999999999999999999887632 32211223
Q ss_pred CCCccCCccc-----------cccCCcccccCCCCCcccccccccccccCceeccC---ccc--ceeecchhhhhhhhhH
Q 024502 185 PVSKYVLPDE-----------NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFG---RLK--CIFYLSIYKFISNLFS 248 (266)
Q Consensus 185 ~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G---~~~--~~~~~~~~~~~~~~~~ 248 (266)
++|...+++. +.+|.. . ....+.|++|..++ .+.+.|| |.. ..+.-+.|+..+.+..
T Consensus 357 ~~p~~~~~~~~lv~~l~~~~~~~~g~~-~-~~~~~gg~~~~~~~-----~~~i~~G~~~Pg~~~~aH~~nE~v~i~~l~~ 429 (444)
T PRK07205 357 LAPLYVPLDSELVSTLMSVYQEKTGDD-S-PAQSSGGATFARTM-----PNCVAFGALFPGAPQTEHQANEHIVLEDLYR 429 (444)
T ss_pred CCceeeCCCcHHHHHHHHHHHHHhCCC-C-ceEEeccHHHHHhC-----CCcEEECCccCCCCCCCcCcccCccHHHHHH
Confidence 4555444441 223332 1 12334555665432 3578899 532 2455666666666554
Q ss_pred HHHHHHHHHHHHh
Q 024502 249 VLNKSLAAVISRL 261 (266)
Q Consensus 249 ~~~~~~~~~~~~~ 261 (266)
+..-+++++.++
T Consensus 430 -~~~~l~~~l~~l 441 (444)
T PRK07205 430 -AMDIYAEAIYRL 441 (444)
T ss_pred -HHHHHHHHHHHH
Confidence 334455555544
No 61
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.75 E-value=9.9e-18 Score=124.85 Aligned_cols=109 Identities=27% Similarity=0.375 Sum_probs=92.6
Q ss_pred EEeeeeEEEEEEEEecCCCccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCcccee
Q 024502 62 IGTGGMIPWKLHVTGKLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQI 141 (266)
Q Consensus 62 ~~~~g~~~~~i~v~G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nvi 141 (266)
++++|..+++|+++|+++|+|.|+.|.||+..+++++.+|++...+.... ......+..+++++.++ +|...|+|
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~----~~~~~~~~~~~~~~~i~-gG~~~n~i 75 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFR----PEEFFPGPPTLNIGSIE-GGTAPNVI 75 (111)
T ss_dssp EEEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTST----HHHCTCTSEEEEEEEEE-EESSTTEE
T ss_pred CcCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccc----cccccccccceeEeecc-cCCcCCEE
Confidence 47899999999999999999999999999999999999998864322100 00111236899999999 99999999
Q ss_pred CCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 024502 142 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (266)
Q Consensus 142 P~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~ 175 (266)
|++|++++++|+++.++.+++++.|++.+++.+.
T Consensus 76 p~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~~~~ 109 (111)
T PF07687_consen 76 PDEATLTVDIRYPPGEDLEEIKAEIEAAVEKIAK 109 (111)
T ss_dssp SSEEEEEEEEEESTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCcchHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999988764
No 62
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.74 E-value=9.4e-17 Score=147.48 Aligned_cols=228 Identities=17% Similarity=0.115 Sum_probs=140.8
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccC--CCCCCc---EEEEeC---------------------
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLN--KLKGGP---LYWIDT--------------------- 55 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~--~~~~d~---~i~~e~--------------------- 55 (266)
+.|++.+.+++++|.|+|+.|||+|+ .|++.+++..... .+.+|+ ++..++
T Consensus 119 ~~l~~~~~~~~~~i~~~~~~dEE~g~---~g~~~~l~~~~~~~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~ 195 (447)
T TIGR01887 119 KILKELGLKLKKKIRFIFGTDEETGW---ACIDYYFEHEEAPDIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLES 195 (447)
T ss_pred HHHHHcCCCCCCcEEEEEECCcccCc---HhHHHHHHhcCCCCEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEE
Confidence 56777777889999999999999998 7999988763221 122333 333332
Q ss_pred ------CCCC-----ceEEee-------------------eeE-----EEEEEEEecCCCccCCCCCCCHHHHHHHHHHH
Q 024502 56 ------ADKQ-----PCIGTG-------------------GMI-----PWKLHVTGKLFHSGLPHKAINPLELAMEALKV 100 (266)
Q Consensus 56 ------~~~~-----i~~~~~-------------------g~~-----~~~i~v~G~~~Has~P~~g~nAi~~~a~~i~~ 100 (266)
+... ..++.+ |.. +++|+++|+++|+|.|++|.|||..+++++.+
T Consensus 196 ~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~ 275 (447)
T TIGR01887 196 FKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELEGSFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQ 275 (447)
T ss_pred EeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcceEEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHh
Confidence 2211 123333 555 79999999999999999999999999999998
Q ss_pred HH--Hhhcc-------CCC------CCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHH
Q 024502 101 IQ--TRFYK-------DFP------PHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKR 165 (266)
Q Consensus 101 l~--~~~~~-------~~~------~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~ 165 (266)
+. +...+ ... ...........+.+++|+|.|+ ++ .|++|++++|+|++++++.+++.++
T Consensus 276 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~nvg~I~-~g-----~p~~~~~~~d~R~~p~~~~e~~~~~ 349 (447)
T TIGR01887 276 LNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLTMNVGVID-YE-----NAEAGLIGLNVRYPVGNDPDTMLKN 349 (447)
T ss_pred ccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcEEEEEEEE-Ee-----CCcEEEEEEEEecCCCCCHHHHHHH
Confidence 86 21000 000 0000000011345789999998 55 3899999999999999999987777
Q ss_pred HHHHHHHHhhcceeeeccCCCCccCCccc-----------cccCCcccccCCCCCcccccccccccccCceeccCccc-c
Q 024502 166 LQEYVDDINENIEKLDTRGPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK-C 233 (266)
Q Consensus 166 i~~~i~~~~~~~~~~~~~~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~-~ 233 (266)
+.+.+.. ..........+|...+++. +..|.. . ......|++|+++|. +.+.|||.. .
T Consensus 350 i~~~~~~---~~~~~~~~~~~p~~~~~~~~lv~~l~~~~~~~~g~~-~-~~~~~~ggtda~~~~-----~~i~~Gp~~pG 419 (447)
T TIGR01887 350 ELAKESG---IVEVTENGYLKPLYVPKDDPLVQTLMKVYEKQTGDE-G-TPVAIGGGTYARLME-----NGVAFGALFPG 419 (447)
T ss_pred HHHHhhC---cEEEEEccCCCCeEECCCCHHHHHHHHHHHHHhCCC-C-CeeEecchhhhhhCC-----CcEEeCCCCCC
Confidence 7644321 1111112234455555541 123332 1 112346678877642 368999863 2
Q ss_pred ----eeecchhhhhhhhhH
Q 024502 234 ----IFYLSIYKFISNLFS 248 (266)
Q Consensus 234 ----~~~~~~~~~~~~~~~ 248 (266)
.+-...|+-.+.+..
T Consensus 420 ~~~~aH~~dE~v~i~~l~~ 438 (447)
T TIGR01887 420 EEDTMHQANEYIMIDDLLL 438 (447)
T ss_pred CCCCccCCCcceeHHHHHH
Confidence 355566665555543
No 63
>PRK08554 peptidase; Reviewed
Probab=99.69 E-value=4.7e-16 Score=142.56 Aligned_cols=245 Identities=18% Similarity=0.121 Sum_probs=142.4
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCCCCceEE-eeeeEEEEEE-------
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQPCIG-TGGMIPWKLH------- 73 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i~~~-~~g~~~~~i~------- 73 (266)
+.|++. .++++|+|+|++|||+|+ .++..+++........+|++++.||+...+.+. .+|. +++++
T Consensus 116 ~~l~~~--~~~~~i~l~~~~dEE~g~---~~~~~~~~~~~~~~~~~~~~iv~Ept~~~~~~~~~kg~-~~~~~~~~~~~~ 189 (438)
T PRK08554 116 KELSKE--PLNGKVIFAFTGDEEIGG---AMAMHIAEKLREEGKLPKYMINADGIGMKPIIRRRKGF-GVTIRVPSEKVK 189 (438)
T ss_pred HHHHhc--CCCCCEEEEEEcccccCc---cccHHHHHHHHhcCCCCCEEEEeCCCCCcchhhcCCce-EEEEEecccccc
Confidence 445443 367899999999999987 455576664322234678999999987654433 3333 34443
Q ss_pred -------------EEec-CCCccCCCCCCC--HHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCC-
Q 024502 74 -------------VTGK-LFHSGLPHKAIN--PLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGG- 136 (266)
Q Consensus 74 -------------v~G~-~~Has~P~~g~n--Ai~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~- 136 (266)
+.|. ++|++.|..+.| |+..+++++.++............ ... -.....++++.... +|.
T Consensus 190 ~~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~~-~~~-~~~~~~~~~~~~p~-~g~n 266 (438)
T PRK08554 190 VKGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASHFLRESNVLAVSLEGKFL-KGN-VVPGEVTLTYLEPG-EGEE 266 (438)
T ss_pred cccceeeeeeceeecccCccccccccCCcCchHHHHHHHHHhhcCceEEEEeeeee-ecC-cccceeEEEEecCC-CCcc
Confidence 4444 499998766655 577777777655432100000000 000 00001122222111 111
Q ss_pred ----------------------------------cccee---CCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhccee
Q 024502 137 ----------------------------------GINQI---PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEK 179 (266)
Q Consensus 137 ----------------------------------~~nvi---P~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~~~~ 179 (266)
..|++ |++|++++|+|+.+ .+.+++.++|++.++....++++
T Consensus 267 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~n~~~i~~g~a~~~~DiR~~~-~~~e~v~~~i~~~~~~~~~~~~~ 345 (438)
T PRK08554 267 VEVDLGLTRLLKAIVPLVRAPIKAEKYSDYGVSITPNVYSFAEGKHVLKLDIRAMS-YSKEDIERTLKEVLEFNLPEAEV 345 (438)
T ss_pred ccccccHHHHHHHHHHHHHHhhccccccccceeeccceEEecCCeEEEEEEEEecC-CCHHHHHHHHHHHhhccCCCceE
Confidence 34454 99999999999977 68899999999888653222221
Q ss_pred -ee-ccCCCCccCCccc-------cc---cCCcccccCCCCCcccccccccccccCceeccCccc-ceeecchhhhhhhh
Q 024502 180 -LD-TRGPVSKYVLPDE-------NI---RGRHVLSLHYLTLGRDDFRIFPLRWQRHKIKFGRLK-CIFYLSIYKFISNL 246 (266)
Q Consensus 180 -~~-~~~~p~~~~~~~~-------~~---~g~~~~~~~~~~~gg~D~~~~~~~~~~~~v~~G~~~-~~~~~~~~~~~~~~ 246 (266)
+. ....|+.+.+++. ++ .|.. ..+....|++|+++|+.. -.+.+.|||.+ ..+--..|+..+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~lv~~~~~~~~~~g~~--~~~~~~~GgtDa~~~~~~-Gip~v~~Gp~~~~~H~~~E~v~i~~l 422 (438)
T PRK08554 346 EIRTNEKAGYLFTPPDEEIVKVALRVLKELGED--AEPVEGPGASDSRYFTPY-GVKAIDFGPKGGNIHGPNEYVEIDSL 422 (438)
T ss_pred EEEeccCCCCcCCCCChHHHHHHHHHHHHhCCC--cEEEecCCchHHHHHHhc-CCCceEECCCCCCCCCCcceEEHHHH
Confidence 22 2234566666551 11 2321 223467899999999754 24456699966 56667888888877
Q ss_pred hHHHHHHHHHHHHH
Q 024502 247 FSVLNKSLAAVISR 260 (266)
Q Consensus 247 ~~~~~~~~~~~~~~ 260 (266)
..... -+.+++-+
T Consensus 423 ~~~~~-i~~~~i~~ 435 (438)
T PRK08554 423 KKMPE-VYKRIALR 435 (438)
T ss_pred HHHHH-HHHHHHHH
Confidence 76543 33444433
No 64
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.19 E-value=4e-11 Score=107.75 Aligned_cols=197 Identities=14% Similarity=0.111 Sum_probs=143.5
Q ss_pred CCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCC-CCCceEEeeeeEEEEEEEEecCCCcc-CCCC
Q 024502 9 LKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA-DKQPCIGTGGMIPWKLHVTGKLFHSG-LPHK 86 (266)
Q Consensus 9 ~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~-~~~i~~~~~g~~~~~i~v~G~~~Has-~P~~ 86 (266)
..++++|++.|+||||.|+ .|+..+.-. ++..|..+..+.. .+.+.+...+...+++++.|+.+|++ .+..
T Consensus 165 ~i~h~~i~~g~s~~Ee~g~---rg~~~~~~a----~f~a~~ay~iDGg~~g~i~~ea~~~~~~~~~~~g~~~h~~~a~~~ 237 (414)
T COG2195 165 EIPHGGIRGGFSPDEEIGG---RGAANKDVA----RFLADFAYTLDGGPVGEIPREAFNAAAVRATIVGPNVHPGSAKGK 237 (414)
T ss_pred cccccCeEEEecchHHhhh---hhhhhccHH----hhhcceeEecCCCccCeeeeeccchheeeeeeeccCcCccchHHH
Confidence 5678999999999999997 788877543 4556778877743 35566777788899999999999997 4677
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHH
Q 024502 87 AINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRL 166 (266)
Q Consensus 87 g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i 166 (266)
..||+..+.+++..+... ..+. .++.+-|..+ .++..|.+.+++...+.+|.......+..++.+
T Consensus 238 ~i~a~~~a~e~~~~~~~~---~~~e-----------~t~~~~Gv~~-~~~~~~~V~~~s~~~~~iR~~d~~~~~s~~~~~ 302 (414)
T COG2195 238 MINALLLAAEFILELPLE---EVPE-----------LTEGPEGVYH-LGDSTNSVEETSLNLAIIRDFDNLLFRARKDSM 302 (414)
T ss_pred HhhHHHhhhhhhhcCCcc---cccc-----------cccccceEEe-ccccccchhhhhhhhhhhhhcchhHHHHhHHHH
Confidence 889999888887655432 1111 3566788888 899999999999999999999987777777777
Q ss_pred HHHHHHHhhcce----e-ee-ccCCCCccCCccc-----------cccCCcccccCCCCCccccccccccc-ccCceecc
Q 024502 167 QEYVDDINENIE----K-LD-TRGPVSKYVLPDE-----------NIRGRHVLSLHYLTLGRDDFRIFPLR-WQRHKIKF 228 (266)
Q Consensus 167 ~~~i~~~~~~~~----~-~~-~~~~p~~~~~~~~-----------~~~g~~~~~~~~~~~gg~D~~~~~~~-~~~~~v~~ 228 (266)
++.+++...++. + ++ ...||.+..+++. ++..+ +...++.||+|.+.+..+ .|...+..
T Consensus 303 ~~~~~~~~~~~g~~~~~~~~~~~~Yp~~~~~~~~~iv~~a~~a~~~l~~~---p~v~~i~gGtd~~~is~~g~p~~~i~~ 379 (414)
T COG2195 303 KDVVEEMAASLGKLAGAELEVKDSYPGWKIKPDSPLVDLAKKAYKELGIK---PKVKPIHGGTDGGVLSFKGLPTPNIST 379 (414)
T ss_pred HHHHHHHHHHhhhccceEEEEeccccCcCCCCCchHHHHHHHHHHHhCCC---ceEEEeecccchhhhhccCCCCceEec
Confidence 777776654432 1 33 4567777666662 22222 223678999999988766 45566666
Q ss_pred Cc
Q 024502 229 GR 230 (266)
Q Consensus 229 G~ 230 (266)
||
T Consensus 380 Gp 381 (414)
T COG2195 380 GP 381 (414)
T ss_pred cc
Confidence 65
No 65
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=98.67 E-value=7.3e-07 Score=78.51 Aligned_cols=251 Identities=20% Similarity=0.257 Sum_probs=149.6
Q ss_pred ChhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHcc---ccCCCCCCcEEEEeC-CCC--Cc--eEEeeeeEEEEE
Q 024502 1 MRKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDG---LLNKLKGGPLYWIDT-ADK--QP--CIGTGGMIPWKL 72 (266)
Q Consensus 1 ~k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g---~~~~~~~d~~i~~e~-~~~--~i--~~~~~g~~~~~i 72 (266)
++++.+.+..++-||.|+|..-||.|+ .|-..+++.. ++.+ +|++...+. +-+ .+ .+|.+|...+.|
T Consensus 144 v~a~~~~g~~lpvnv~f~~EgmEEsgS---~~L~~l~~~~kD~~~~~--vD~vciSdnyWlg~kkPcltyGlRG~~yf~i 218 (473)
T KOG2276|consen 144 VKALQQLGIDLPVNVVFVFEGMEESGS---EGLDELIEKEKDKFFKD--VDFVCISDNYWLGTKKPCLTYGLRGVIYFQI 218 (473)
T ss_pred HHHHHHhCccccceEEEEEEechhccC---ccHHHHHHHHhhhhhcc--CCEEEeeCceeccCCCcccccccccceeEEE
Confidence 467888999999999999999999999 6777777542 2333 466655443 222 34 457889999999
Q ss_pred EEEe--cCCCccCC-CCCCCHHHHHHHHHHHHHHh--------hccCCCCCCC---------------------CccCCc
Q 024502 73 HVTG--KLFHSGLP-HKAINPLELAMEALKVIQTR--------FYKDFPPHPK---------------------EQVYGF 120 (266)
Q Consensus 73 ~v~G--~~~Has~P-~~g~nAi~~~a~~i~~l~~~--------~~~~~~~~~~---------------------~~~~~~ 120 (266)
+|.| +-.||+.- -.-.-|+..+..++..|.+. +.+.+.|.-. ...+.+
T Consensus 219 ~v~g~~~DlHSGvfGG~~hE~m~dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~~ 298 (473)
T KOG2276|consen 219 EVEGPSKDLHSGVFGGVVHEAMNDLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLPT 298 (473)
T ss_pred EEeecccccccccccchhHHHHHHHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhcccccccccc
Confidence 9999 88999842 11135666666666655432 1111222100 000000
Q ss_pred ------------CCCceEe--eEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcce----e-ee
Q 024502 121 ------------ETPSTMK--PTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIE----K-LD 181 (266)
Q Consensus 121 ------------~~~~t~~--~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~~~----~-~~ 181 (266)
++..+++ -|.++ +++...+||.++...+.+|..|..+.+.+.+.+.+.+++.-.+.. . +.
T Consensus 299 ~~k~~~l~~rWryPSLsihgIeGaFs-~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~~nS~N~l~~~ 377 (473)
T KOG2276|consen 299 DDKKRILMHRWRYPSLSIHGIEGAFS-GPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAELNSPNKLKVS 377 (473)
T ss_pred CchHHHhhhhcccCccceecccceee-CCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEe
Confidence 1112221 24466 778889999999999999999999999988888887776543321 1 22
Q ss_pred -ccCCCCccCCcc-----------ccccCCcccccCCCCCcc-----cccccccccccCceeccCccc-ceeecchhhhh
Q 024502 182 -TRGPVSKYVLPD-----------ENIRGRHVLSLHYLTLGR-----DDFRIFPLRWQRHKIKFGRLK-CIFYLSIYKFI 243 (266)
Q Consensus 182 -~~~~p~~~~~~~-----------~~~~g~~~~~~~~~~~gg-----~D~~~~~~~~~~~~v~~G~~~-~~~~~~~~~~~ 243 (266)
...-.|+..|++ +.++|.+. ...--|| =+|.-.. ..+...+.+|... ..+-.+.++.+
T Consensus 378 ~~~~~~~Wv~d~~~~~y~a~krA~~~v~gveP---d~~ReGgSIPvt~tfQ~~~-~~~V~llP~G~~dD~aHsqNEkl~i 453 (473)
T KOG2276|consen 378 MGHAGAPWVSDPDDPHYLALKRAIETVYGVEP---DFTREGGSIPVTLTFQDIT-GKSVLLLPYGASDDGAHSQNEKLNI 453 (473)
T ss_pred ecCCCCceecCCCchhHHHHHHHHHHhhCCCC---CccccCCccceehHHHHHh-CCCeEEecccccccchhhhcccccH
Confidence 334455666766 13344321 1111111 1111111 1234445566555 33446677777
Q ss_pred hhhhHHHHHHHHHHHHHhh
Q 024502 244 SNLFSVLNKSLAAVISRLQ 262 (266)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~ 262 (266)
+|- --|.+-|+|.|++|.
T Consensus 454 ~N~-~~G~k~l~ay~~el~ 471 (473)
T KOG2276|consen 454 TNY-VEGTKVLAAYISELA 471 (473)
T ss_pred HHH-hhhHHHHHHHHHHHh
Confidence 764 457788888888763
No 66
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.19 E-value=6e-06 Score=73.58 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=103.2
Q ss_pred CCCCceEEEEEEcCCCCCCCCCchHHHHHHccc-c-CCCC--CCcEEEEeCCC----C----CceEEeeeeEEEEEEEEe
Q 024502 9 LKLKSTVIAVFIASEENSAITGVGVDALVKDGL-L-NKLK--GGPLYWIDTAD----K----QPCIGTGGMIPWKLHVTG 76 (266)
Q Consensus 9 ~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~-~-~~~~--~d~~i~~e~~~----~----~i~~~~~g~~~~~i~v~G 76 (266)
...+|||.|+.+||||..+ .|++..+.... + ++++ .-.+|..+++. | .+.+|..|..-.-.-|.|
T Consensus 159 ~~~~GNlLf~a~pdEE~~s---~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~f~vvG 235 (553)
T COG4187 159 TDRQGNLLFMAVPDEEVES---RGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVG 235 (553)
T ss_pred CCCCCcEEEEeccchhhhc---ccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEeccchhhcceeEEEe
Confidence 4789999999999999988 79888765321 1 2222 23456666542 2 234578888888889999
Q ss_pred cCCCccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCccCCcCCCceEeeEEEecCCCccce-eCCeEEEEEEEeCCC
Q 024502 77 KLFHSGLPHKAINPLELAMEALKVIQTRFYKDFPPHPKEQVYGFETPSTMKPTQWSYPGGGINQ-IPGECTVSGDVRLTP 155 (266)
Q Consensus 77 ~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~g~i~~gg~~~nv-iP~~a~~~~diR~~~ 155 (266)
...|++.|..|+||-..++.++.+++... ++.... .++-..+++.+..-. --...|| .|.++.+.+++-+.
T Consensus 236 ~etHvG~~f~Gvnan~maSei~~~le~N~--~l~dr~--~Ge~t~PPs~L~qkD---lKe~Y~VqTp~~a~~~fN~l~h- 307 (553)
T COG4187 236 CETHVGYPFEGVNANFMASEITRRLELNA--DLADRV--DGEITPPPSCLEQKD---LKESYNVQTPERAWLYFNWLYH- 307 (553)
T ss_pred eccccCCcccCCCHHHHHHHHHHHhhcCh--hhhhhh--CCeeCCCcHhhhhhh---hhhhccccCcchhhhhheehhh-
Confidence 99999999999999999999999886421 111100 000111122222222 2345666 68999999998665
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 024502 156 FYNVTDVMKRLQEYVDDINE 175 (266)
Q Consensus 156 ~~~~~~v~~~i~~~i~~~~~ 175 (266)
+.+.+++.+++++.++..+.
T Consensus 308 ~~ta~~~~d~l~~~a~~A~~ 327 (553)
T COG4187 308 SRTAKELFDRLKEEAETAAE 327 (553)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 46688888888777665543
No 67
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=97.50 E-value=5.3e-05 Score=61.15 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=43.8
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCc-hHHHHHHccccCCCCCCcEEEEeCCCCCc
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGV-GVDALVKDGLLNKLKGGPLYWIDTADKQP 60 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~-Ga~~~i~~g~~~~~~~d~~i~~e~~~~~i 60 (266)
+.|++.+..++++|.|+|++|||+|+ . |++.+++++....+++|.++..|++....
T Consensus 49 ~~l~~~~~~~~~~i~~~~~~~EE~g~---~~g~~~l~~~~~~~~~~~~~~~~~e~~~~~~ 105 (189)
T PF01546_consen 49 KALKESGDDLPGNIIFLFTPDEEIGS---IGGAKHLLEEGAFFGLHPDYVIIGEPTGKGG 105 (189)
T ss_dssp HHHHHTTTTCSSEEEEEEESTCCGTS---TTHHHHHHHHCEEEEEEESEEEECECETTSE
T ss_pred HHHHhccccccccccccccccccCCC---cchhhhhhhhccccccccccccccccccccc
Confidence 45666778999999999999999997 5 99999998643344567888777765543
No 68
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=92.64 E-value=0.078 Score=42.34 Aligned_cols=51 Identities=27% Similarity=0.257 Sum_probs=36.7
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeC
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDT 55 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~ 55 (266)
|.|++.+.+++++|+|+|..+||.|. .|++.+++.......+..++|..+.
T Consensus 39 r~l~~~~~~~~~~i~fv~~~~EE~gl---~GS~~~~~~~~~~~~~~~~~inlD~ 89 (179)
T PF04389_consen 39 RVLKELKPQPKRTIRFVFFDGEEQGL---LGSRAFVEHDHEELDNIAAVINLDM 89 (179)
T ss_dssp HHHHHSTHSSSEEEEEEEESSGGGTS---HHHHHHHHHHHCHHHHEEEEEEECS
T ss_pred HHHHHhhcccCccEEEEEecccccCc---cchHHHHHhhhcccccceeEEeccc
Confidence 56777777889999999999999998 8999999731111112235666664
No 69
>PRK09864 putative peptidase; Provisional
Probab=89.40 E-value=0.49 Score=42.45 Aligned_cols=39 Identities=23% Similarity=0.163 Sum_probs=32.6
Q ss_pred CCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCC
Q 024502 11 LKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (266)
Q Consensus 11 ~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~ 57 (266)
++.+|+++|+..||.|. +||+.... .++||.+|..+.+.
T Consensus 193 ~~~~vy~v~TvQEEvGl---rGA~~aa~-----~i~PDiaIavDvt~ 231 (356)
T PRK09864 193 PEITLYGVGSVEEEVGL---RGAQTSAE-----HIKPDVVIVLDTAV 231 (356)
T ss_pred CCCeEEEEEEcchhcch---HHHHHHHh-----cCCCCEEEEEeccc
Confidence 67899999999999998 79887764 35789999888764
No 70
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=89.25 E-value=0.49 Score=42.37 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=32.7
Q ss_pred CCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCC
Q 024502 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (266)
Q Consensus 10 ~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~ 57 (266)
+++.+|+++|+..||.|. +||+.... .++||.+|..+.+.
T Consensus 197 ~~~~~l~~~~tvqEEvG~---rGA~~aa~-----~i~pD~aI~vDv~~ 236 (350)
T TIGR03107 197 ELPNTLIAGANVQEEVGL---RGAHVSTT-----KFNPDIFFAVDCSP 236 (350)
T ss_pred CCCceEEEEEEChhhcCc---hhhhhHHh-----hCCCCEEEEEecCC
Confidence 467899999999999998 79886543 35789999988764
No 71
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=88.79 E-value=0.48 Score=41.33 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=30.1
Q ss_pred CCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCC
Q 024502 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTA 56 (266)
Q Consensus 10 ~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~ 56 (266)
.+..+|+++|+..||.|. .||+..... ++||.++..+.+
T Consensus 153 ~~~~~v~~v~tvqEEvG~---rGA~~aa~~-----i~PD~ai~vD~~ 191 (292)
T PF05343_consen 153 ELDVDVYFVFTVQEEVGL---RGAKTAAFR-----IKPDIAIAVDVT 191 (292)
T ss_dssp S-SSEEEEEEESSCTTTS---HHHHHHHHH-----H-CSEEEEEEEE
T ss_pred CCCceEEEEEEeeeeecC---cceeecccc-----cCCCEEEEEeee
Confidence 345899999999999998 899887654 467888877653
No 72
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=88.21 E-value=0.45 Score=42.49 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=33.9
Q ss_pred cCCCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCC
Q 024502 8 KLKLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (266)
Q Consensus 8 ~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~ 57 (266)
+.+++.+++++|++.||.|. +||+.... .++||.+|..+.++
T Consensus 197 ~~~~~~~vy~v~tvqEEVGl---rGA~~~a~-----~i~pd~aiavd~~~ 238 (355)
T COG1363 197 GIELPADVYFVASVQEEVGL---RGAKTSAF-----RIKPDIAIAVDVTP 238 (355)
T ss_pred cCCCCceEEEEEecchhhcc---chhhcccc-----ccCCCEEEEEeccc
Confidence 45788999999999999997 78776653 35789999888654
No 73
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=87.93 E-value=0.44 Score=42.45 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=27.0
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHc
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKD 39 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~ 39 (266)
+.|++. .++++|+|++..+||.|. .|++.+++.
T Consensus 156 r~l~~~--~~~~~I~fv~~~~EE~Gl---~GS~~~~~~ 188 (346)
T PRK10199 156 ERLKNV--PTEYGIRFVATSGEEEGK---LGAENLLKR 188 (346)
T ss_pred HHHhhC--CCCCcEEEEEECCcccCc---HHHHHHHHh
Confidence 445543 467899999999999998 899999986
No 74
>PRK09961 exoaminopeptidase; Provisional
Probab=86.86 E-value=0.98 Score=40.37 Aligned_cols=40 Identities=25% Similarity=0.169 Sum_probs=32.4
Q ss_pred CCCceEEEEEEcCCCCCCCCCchHHHHHHccccCCCCCCcEEEEeCCC
Q 024502 10 KLKSTVIAVFIASEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTAD 57 (266)
Q Consensus 10 ~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~~~~~~d~~i~~e~~~ 57 (266)
++..+|+++|+..||.|. +||+.... .++||.+|..+.+.
T Consensus 185 ~~~~~v~~~~tvqEEvG~---rGa~~aa~-----~i~pd~~I~vDv~~ 224 (344)
T PRK09961 185 ELPAEVWLVASSSEEVGL---RGGQTATR-----AVSPDVAIVLDTAC 224 (344)
T ss_pred CCCceEEEEEEcccccch---HHHHHHHh-----ccCCCEEEEEeccC
Confidence 467899999999999998 78887753 25789999888653
No 75
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=84.35 E-value=0.63 Score=41.54 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=21.1
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCC
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSA 27 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~ 27 (266)
+.|++.+..++++|+++|+.+||+|.
T Consensus 196 ~~l~~~~~~~~~~v~~~~t~qEEvG~ 221 (343)
T TIGR03106 196 KAIVEHKVPLPVDVHPLFTITEEVGS 221 (343)
T ss_pred HHHHhcCCCCCceEEEEEECCcccCc
Confidence 45665555678999999999999984
No 76
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=71.99 E-value=10 Score=35.57 Aligned_cols=127 Identities=6% Similarity=-0.040 Sum_probs=87.4
Q ss_pred ceEeeEEEecCCCccceeCCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcceeeeccCCCCccCCccc---------
Q 024502 124 STMKPTQWSYPGGGINQIPGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINENIEKLDTRGPVSKYVLPDE--------- 194 (266)
Q Consensus 124 ~t~~~g~i~~gg~~~nviP~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~~~~~~~~~~p~~~~~~~~--------- 194 (266)
++.|+|.+. ...+.+++.+++|+++..+.+++.+++++..+.....+++ ...+||++.+++.
T Consensus 344 ~S~Nlg~v~-------~~~~~~~i~~~~Rs~~~~~~~~i~~~i~~~~~~~g~~~~~--~~~~p~w~~~~ds~lv~~l~~~ 414 (485)
T PRK15026 344 TSLNVGVVT-------MTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA--KGAYPGWQPDANSPVMHLVRET 414 (485)
T ss_pred eeeEEEEEE-------EeCCEEEEEEEecCCCchHHHHHHHHHHHHHHHcCcEEEE--eCCCCCCCCCCCCHHHHHHHHH
Confidence 455666655 5567899999999999999999999998876554322221 4578999988872
Q ss_pred --cccCCcccccCCCCCccccccccccccc-CceeccCccc-ceeecchhhhhhhhhHHHHHHHHHHHHHhh
Q 024502 195 --NIRGRHVLSLHYLTLGRDDFRIFPLRWQ-RHKIKFGRLK-CIFYLSIYKFISNLFSVLNKSLAAVISRLQ 262 (266)
Q Consensus 195 --~~~g~~~~~~~~~~~gg~D~~~~~~~~~-~~~v~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (266)
+..|+. .......||.|.+.|.+++| .+.|.|||.. ..+--..++.++.+ ..-...+..++.++|
T Consensus 415 y~e~~G~~--~~~~~ihaglEcG~~~~~~p~i~~VsfGP~~~~~HspdE~v~I~s~-~~~~~~l~~~l~~~~ 483 (485)
T PRK15026 415 YQRLFNKT--PNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESV-GHYWTLLTELLKEIP 483 (485)
T ss_pred HHHHHCCC--CeEEEEEEEehHHHHHhhCCCCCEEEECCCCCCCCCCCcEEEhHHH-HHHHHHHHHHHHhhh
Confidence 344543 12234568999999997765 4699999998 55556666666655 333445555565554
No 77
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=61.80 E-value=5.9 Score=36.30 Aligned_cols=35 Identities=34% Similarity=0.289 Sum_probs=29.3
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHccc
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGL 41 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~ 41 (266)
|.|++.. ++.+|+|++...||.|. .|+..++....
T Consensus 241 r~l~~~~--p~~~v~f~~~~aEE~Gl---~GS~~~~~~~~ 275 (435)
T COG2234 241 RVLKGNP--PKRTVRFVAFGAEESGL---LGSEAYVKRLS 275 (435)
T ss_pred HHHhcCC--CCceEEEEEecchhhcc---cccHHHHhcCC
Confidence 5566654 88999999999999998 89999998654
No 78
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=59.21 E-value=4.9 Score=31.82 Aligned_cols=54 Identities=15% Similarity=-0.077 Sum_probs=39.1
Q ss_pred CCCCcccccccccc--cccCceeccCcccceeecchhhhhhhhhHHHHHHHHHHHH
Q 024502 206 YLTLGRDDFRIFPL--RWQRHKIKFGRLKCIFYLSIYKFISNLFSVLNKSLAAVIS 259 (266)
Q Consensus 206 ~~~~gg~D~~~~~~--~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (266)
..+.|++|+++|.+ ....+.+.|||.....|...+.....-+..+.+.++++|.
T Consensus 133 ~~~~g~tD~~~~~~~~~~~~~~i~~G~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~ 188 (189)
T PF01546_consen 133 VASGGGTDAGFLAEVKGLGIPAIGFGPGGSNAHTPDEYIDIEDLVKGAKIYAALLE 188 (189)
T ss_dssp EEESSSSTHHHHHCHHHTTEEEEEEESCEESTTSTT-EEEHHHHHHHHHHHHHHHH
T ss_pred cceeccccchhhhhhhccccceeeeCCCCCCCCCCCcEecHHHHHHHHHHHHHHHh
Confidence 56789999999997 5677899999998555555555556666667777776653
No 79
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=54.75 E-value=9 Score=37.56 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=30.2
Q ss_pred hhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHcc
Q 024502 3 KLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDG 40 (266)
Q Consensus 3 ~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g 40 (266)
.+++.+++|.|+|+|+...+||.|. .|+-.+++..
T Consensus 387 ~~~k~gwrP~RtI~F~sWdAeEfGl---iGStE~~E~~ 421 (702)
T KOG2195|consen 387 KLKKRGWRPRRTILFASWDAEEFGL---LGSTEWAEEY 421 (702)
T ss_pred HHHHcCCCccceEEEEEccchhccc---cccHHHHHHH
Confidence 4566779999999999999999998 7998888753
No 80
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=33.15 E-value=23 Score=35.29 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=35.4
Q ss_pred hhhhcccCCCCceEEEEEEcCCCCCCCCCchHHHHHHcccc-CCCCCCcEEEEeC
Q 024502 2 RKLGETKLKLKSTVIAVFIASEENSAITGVGVDALVKDGLL-NKLKGGPLYWIDT 55 (266)
Q Consensus 2 k~L~~~~~~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~g~~-~~~~~d~~i~~e~ 55 (266)
|.+.+....+..+|+|+|..+||.+. .|+..++.+... +.+ .+++..|.
T Consensus 176 Rv~s~~~~~l~~~vVFLfNgaEE~~L---~gsH~FItQH~w~~~~--ka~INLea 225 (834)
T KOG2194|consen 176 RVLSKSDKLLTHSVVFLFNGAEESGL---LGSHAFITQHPWSKNI--KAVINLEA 225 (834)
T ss_pred HHhhcCCCcccccEEEEecCcccchh---hhcccceecChhhhhh--heEEeccc
Confidence 55666666779999999999999987 688888875432 223 36666553
No 81
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=29.57 E-value=1.3e+02 Score=20.82 Aligned_cols=31 Identities=0% Similarity=0.059 Sum_probs=25.6
Q ss_pred eEEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 024502 144 ECTVSGDVRLTPFYNVTDVMKRLQEYVDDIN 174 (266)
Q Consensus 144 ~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~ 174 (266)
..+.++.||.+++....++.++|.+.++-.+
T Consensus 8 ~f~~tIaIrvp~~~~y~~L~~ki~~kLkl~~ 38 (80)
T cd06406 8 HFKYTVAIQVARGLSYATLLQKISSKLELPA 38 (80)
T ss_pred EEEEEEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 3556889999999999999999998886433
No 82
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=29.50 E-value=1.7e+02 Score=19.29 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=25.5
Q ss_pred CeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 024502 143 GECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (266)
Q Consensus 143 ~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~ 176 (266)
+...+.+.+..+...+..++.+.+++..++.+.+
T Consensus 43 ~~~~~~~~v~~p~~~~~~~l~~~l~~l~~~~~~~ 76 (81)
T cd04869 43 PLFKAQATLALPAGTDLDALREELEELCDDLNVD 76 (81)
T ss_pred ceEEEEEEEecCCCCCHHHHHHHHHHHHHHhcce
Confidence 5667777777777667888888888888776533
No 83
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=28.50 E-value=51 Score=25.95 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=12.1
Q ss_pred CceeccCcccce--eecch
Q 024502 223 RHKIKFGRLKCI--FYLSI 239 (266)
Q Consensus 223 ~~~v~~G~~~~~--~~~~~ 239 (266)
..+|=||||+|. ||+-.
T Consensus 72 ~~iI~~sPMGCrTGFYli~ 90 (158)
T PRK02260 72 VEIIDISPMGCRTGFYLIL 90 (158)
T ss_pred ceEEEECCCccccccEEEE
Confidence 457888999987 55543
No 84
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.76 E-value=1.8e+02 Score=19.09 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=25.8
Q ss_pred CeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Q 024502 143 GECTVSGDVRLTPFYNVTDVMKRLQEYVDDINEN 176 (266)
Q Consensus 143 ~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~~ 176 (266)
+...+.+.+..+...+.+++.+.+++..++.+..
T Consensus 37 ~~f~~~~~v~~p~~~~~~~l~~~l~~l~~~l~l~ 70 (75)
T cd04870 37 GRLSLGILVQIPDSADSEALLKDLLFKAHELGLQ 70 (75)
T ss_pred CeeEEEEEEEcCCCCCHHHHHHHHHHHHHHcCce
Confidence 4567777778887778898999888888776543
No 85
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=26.06 E-value=1.6e+02 Score=20.17 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=27.0
Q ss_pred eEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 024502 144 ECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (266)
Q Consensus 144 ~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~ 175 (266)
++++++.+|.+++.+..++.+.|.+.+.-.+.
T Consensus 4 h~~fTVai~v~~g~~y~~L~~~ls~kL~l~~~ 35 (78)
T cd06411 4 QCAFTVALRAPRGADVSSLRALLSQALPQQAQ 35 (78)
T ss_pred EEEEEEEEEccCCCCHHHHHHHHHHHhcCChh
Confidence 47899999999999999999999888765443
No 86
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=23.73 E-value=74 Score=26.78 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=24.1
Q ss_pred CCCceEEEEEEcCCCCCCCCCchHHHHHHc
Q 024502 10 KLKSTVIAVFIASEENSAITGVGVDALVKD 39 (266)
Q Consensus 10 ~~~~~v~~if~~dEE~g~~~~~Ga~~~i~~ 39 (266)
.++++|.|.|-.+|--|- .|++.|+.+
T Consensus 48 ~~~knV~F~~F~GEs~dY---iGS~R~vyD 74 (234)
T PF05450_consen 48 NLNKNVLFAFFNGESFDY---IGSSRFVYD 74 (234)
T ss_pred cccCcEEEEEecCccccc---cchHHHHHH
Confidence 578999999999999987 799999865
No 87
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=22.43 E-value=1.8e+02 Score=19.87 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=24.1
Q ss_pred CCeEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Q 024502 142 PGECTVSGDVRLTPFYNVTDVMKRLQEYVDDINE 175 (266)
Q Consensus 142 P~~a~~~~diR~~~~~~~~~v~~~i~~~i~~~~~ 175 (266)
+....+.+++|.++ .+.+.+++.+.+..++.+.
T Consensus 46 ~~~~~~e~~v~~~~-~~~~~lr~~L~~la~elgv 78 (84)
T cd04871 46 SPKACVEFSVRGQP-ADLEALRAALLELASELNV 78 (84)
T ss_pred CCcEEEEEEEeCCC-CCHHHHHHHHHHHhcccCc
Confidence 45568889999766 6788888888776665543
No 88
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=22.19 E-value=4.1e+02 Score=21.21 Aligned_cols=30 Identities=3% Similarity=-0.035 Sum_probs=22.3
Q ss_pred eEEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 024502 144 ECTVSGDVRLTPFYNVTDVMKRLQEYVDDI 173 (266)
Q Consensus 144 ~a~~~~diR~~~~~~~~~v~~~i~~~i~~~ 173 (266)
++.+.+.+-++.....+.+.+.+++.+..+
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l 143 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAV 143 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhC
Confidence 577777777776666777888888888764
No 89
>PF02664 LuxS: S-Ribosylhomocysteinase (LuxS); InterPro: IPR003815 In bacteria, the regulation of gene expression in response to changes in cell density is called quorum sensing. Quorum-sensing bacteria produce, release, and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. For example, enteric bacteria use quorum sensing to regulate several traits that allow them to establish and maintain infection in their host, including motility, biofilm formation, and virulence-specific genes []. The LuxS/AI-2 system is one of several quorum sensing mechanisms. AI-2 (autoinducer-2) is a signalling molecule that functions in interspecies communication by regulating niche-specific genes with diverse functions in various bacteria, often in response to population density. LuxS (S-ribosylhomocysteinase; 4.4.1.21 from EC) is an autoinducer-production protein that has a metabolic function as a component of the activated methyl cycle. LuxS converts S-ribosylhomocysteine to homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD); DPD can then spontaneously cyclise to active AI-2 [, ]. LuxS is a homodimeric iron-dependent metalloenzyme containing two identical tetrahedral metal-binding sites similar to those found in peptidases and amidases []. ; GO: 0005506 iron ion binding, 0009372 quorum sensing; PDB: 1J6X_B 1VGX_A 1INN_B 1VJE_B 1J6V_A 1VH2_A 1J6W_B 1JOE_B 1J98_A 1IE0_A ....
Probab=21.42 E-value=24 Score=27.64 Aligned_cols=18 Identities=39% Similarity=0.927 Sum_probs=12.2
Q ss_pred CceeccCcccce--eecchh
Q 024502 223 RHKIKFGRLKCI--FYLSIY 240 (266)
Q Consensus 223 ~~~v~~G~~~~~--~~~~~~ 240 (266)
..+|-||||+|. ||+-..
T Consensus 72 ~~iI~~gPMGCrTGFYli~~ 91 (157)
T PF02664_consen 72 DKIIDFGPMGCRTGFYLILW 91 (157)
T ss_dssp EEEEEEEE-TTSSEEEEEEE
T ss_pred CeEEEecCcccccccEEEEe
Confidence 467889999987 665443
Done!