Query 024505
Match_columns 266
No_of_seqs 44 out of 46
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 05:05:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07607 BAR_SH3P_plant The Bin 100.0 2E-121 4E-126 799.5 23.5 209 48-257 1-209 (209)
2 cd07307 BAR The Bin/Amphiphysi 99.5 3.5E-12 7.6E-17 98.1 18.5 187 61-255 6-192 (194)
3 PF03114 BAR: BAR domain; Int 99.2 4.9E-09 1.1E-13 83.8 20.2 219 13-258 3-228 (229)
4 smart00721 BAR BAR domain. 98.7 1.3E-05 2.7E-10 66.6 23.0 227 14-259 5-238 (239)
5 cd07604 BAR_ASAPs The Bin/Amph 97.9 0.0014 3.1E-08 58.0 17.8 196 41-258 8-212 (215)
6 cd07639 BAR_ACAP1 The Bin/Amph 97.6 0.0052 1.1E-07 54.4 16.3 178 67-256 21-198 (200)
7 cd07595 BAR_RhoGAP_Rich-like T 97.6 0.014 3E-07 52.5 18.3 162 87-260 61-226 (244)
8 cd07603 BAR_ACAPs The Bin/Amph 97.5 0.016 3.4E-07 50.8 17.1 179 65-255 19-197 (200)
9 cd07619 BAR_Rich2 The Bin/Amph 97.5 0.016 3.6E-07 53.0 17.8 200 47-262 17-232 (248)
10 cd07606 BAR_SFC_plant The Bin/ 97.4 0.025 5.5E-07 49.9 17.4 183 47-255 14-200 (202)
11 cd07600 BAR_Gvp36 The Bin/Amph 97.3 0.023 5E-07 51.4 16.7 222 13-258 11-242 (242)
12 cd07637 BAR_ACAP3 The Bin/Amph 97.3 0.034 7.4E-07 48.9 17.1 144 103-256 55-198 (200)
13 cd07634 BAR_GAP10-like The Bin 97.3 0.023 5.1E-07 50.9 16.0 182 65-255 19-204 (207)
14 cd07602 BAR_RhoGAP_OPHN1-like 97.2 0.027 5.8E-07 50.3 16.1 182 66-256 20-205 (207)
15 cd07616 BAR_Endophilin_B1 The 97.2 0.032 7E-07 50.5 16.7 154 86-258 72-229 (229)
16 cd07592 BAR_Endophilin_A The B 97.1 0.083 1.8E-06 47.3 17.5 151 86-260 67-218 (223)
17 cd07594 BAR_Endophilin_B The B 97.0 0.13 2.8E-06 46.4 18.6 152 87-257 73-228 (229)
18 cd07613 BAR_Endophilin_A1 The 97.0 0.078 1.7E-06 47.9 16.8 150 86-261 67-219 (223)
19 cd07618 BAR_Rich1 The Bin/Amph 97.0 0.1 2.2E-06 47.7 17.6 196 47-262 17-230 (246)
20 cd07617 BAR_Endophilin_B2 The 96.9 0.087 1.9E-06 47.7 16.6 183 47-257 19-219 (220)
21 cd07593 BAR_MUG137_fungi The B 96.9 0.13 2.7E-06 46.0 17.3 157 85-261 53-211 (215)
22 cd07638 BAR_ACAP2 The Bin/Amph 96.7 0.18 3.9E-06 44.8 16.6 183 48-256 16-198 (200)
23 cd07615 BAR_Endophilin_A3 The 96.5 0.27 5.8E-06 44.5 16.7 148 87-260 68-218 (223)
24 cd07596 BAR_SNX The Bin/Amphip 96.5 0.37 8E-06 39.2 18.2 163 88-255 44-216 (218)
25 cd07636 BAR_GRAF The Bin/Amphi 96.4 0.27 5.8E-06 44.2 16.0 186 61-255 15-204 (207)
26 cd07598 BAR_FAM92 The Bin/Amph 96.3 0.76 1.7E-05 40.8 19.2 154 85-259 41-203 (211)
27 cd07635 BAR_GRAF2 The Bin/Amph 96.2 0.47 1E-05 42.6 16.3 140 107-255 65-204 (207)
28 cd07590 BAR_Bin3 The Bin/Amphi 96.1 1 2.2E-05 40.6 18.4 196 33-257 8-211 (225)
29 cd07588 BAR_Amphiphysin The Bi 96.0 1.1 2.3E-05 40.0 18.1 176 59-259 27-207 (211)
30 cd07601 BAR_APPL The Bin/Amphi 95.4 1.5 3.1E-05 39.5 16.1 146 103-256 59-205 (215)
31 cd07614 BAR_Endophilin_A2 The 95.4 2 4.3E-05 39.0 17.1 152 86-260 67-218 (223)
32 cd07676 F-BAR_FBP17 The F-BAR 94.5 3.7 7.9E-05 37.2 18.1 166 82-254 36-248 (253)
33 cd07643 I-BAR_IMD_MIM Inverse 90.8 14 0.0003 34.4 14.8 88 103-200 69-163 (231)
34 cd07620 BAR_SH3BP1 The Bin/Amp 90.5 16 0.00034 34.4 17.3 152 88-259 62-238 (257)
35 PF10455 BAR_2: Bin/amphiphysi 90.2 17 0.00036 34.4 18.1 139 103-258 146-287 (289)
36 cd07605 I-BAR_IMD Inverse (I)- 89.0 17 0.00037 32.9 17.9 139 110-253 69-214 (223)
37 PF08397 IMD: IRSp53/MIM homol 88.0 17 0.00037 31.6 17.9 192 48-256 10-206 (219)
38 cd07633 BAR_OPHN1 The Bin/Amph 87.6 22 0.00048 32.5 14.8 182 64-254 18-203 (207)
39 cd07642 BAR_ASAP2 The Bin/Amph 87.5 23 0.0005 32.5 17.3 180 74-258 28-212 (215)
40 PF09325 Vps5: Vps5 C terminal 83.3 26 0.00057 29.5 23.8 149 105-255 78-234 (236)
41 cd07599 BAR_Rvs167p The Bin/Am 82.4 31 0.00067 29.7 14.6 139 47-212 22-170 (216)
42 cd07612 BAR_Bin2 The Bin/Amphi 76.9 59 0.0013 29.6 16.5 192 33-259 9-207 (211)
43 PF04912 Dynamitin: Dynamitin 76.8 8.2 0.00018 36.4 6.7 34 150-183 87-120 (388)
44 cd07675 F-BAR_FNBP1L The F-BAR 75.5 69 0.0015 29.7 18.7 149 82-256 36-213 (252)
45 PF06730 FAM92: FAM92 protein; 70.7 89 0.0019 28.9 18.5 157 83-255 46-206 (219)
46 cd07653 F-BAR_CIP4-like The F- 70.2 73 0.0016 27.6 17.8 64 82-145 36-101 (251)
47 cd07591 BAR_Rvs161p The Bin/Am 68.3 89 0.0019 27.9 18.5 175 58-254 25-207 (224)
48 cd07631 BAR_APPL1 The Bin/Amph 58.1 1.6E+02 0.0034 27.3 19.9 183 44-256 19-205 (215)
49 cd07686 F-BAR_Fer The F-BAR (F 57.2 1.6E+02 0.0034 27.1 17.7 80 83-167 37-118 (234)
50 cd07610 FCH_F-BAR The Extended 55.2 1.1E+02 0.0025 24.8 16.6 64 82-146 31-94 (191)
51 cd07624 BAR_SNX7_30 The Bin/Am 49.3 1.8E+02 0.0038 25.2 17.7 131 106-254 67-197 (200)
52 PF07926 TPR_MLP1_2: TPR/MLP1/ 48.3 1.5E+02 0.0032 24.1 9.0 81 151-231 18-99 (132)
53 PRK05849 hypothetical protein; 47.6 31 0.00067 36.6 5.0 58 82-143 434-501 (783)
54 PF01025 GrpE: GrpE; InterPro 44.3 84 0.0018 25.7 6.1 73 186-258 6-78 (165)
55 cd07629 BAR_Atg20p The Bin/Amp 42.4 71 0.0015 27.7 5.7 52 91-145 48-99 (187)
56 KOG4559 Uncharacterized conser 41.2 37 0.0008 28.9 3.6 56 146-201 47-116 (120)
57 PF06075 DUF936: Plant protein 40.6 40 0.00087 34.7 4.4 61 199-260 317-391 (579)
58 KOG3771 Amphiphysin [Intracell 39.8 4.4E+02 0.0095 27.1 13.4 158 9-205 4-171 (460)
59 KOG1118 Lysophosphatidic acid 39.4 4E+02 0.0088 26.6 16.0 219 12-260 2-237 (366)
60 cd07652 F-BAR_Rgd1 The F-BAR ( 38.9 2.9E+02 0.0062 24.7 11.1 61 82-144 36-99 (234)
61 KOG3208 SNARE protein GS28 [In 37.4 1E+02 0.0022 28.9 6.2 39 2-46 8-48 (231)
62 PRK13858 type IV secretion sys 35.0 69 0.0015 28.0 4.4 89 39-134 31-120 (147)
63 PF11697 DUF3293: Protein of u 31.4 21 0.00045 26.9 0.6 18 143-160 52-69 (73)
64 COG5346 Predicted membrane pro 31.3 39 0.00084 29.5 2.3 14 229-242 54-67 (136)
65 cd07654 F-BAR_FCHSD The F-BAR 31.0 4.3E+02 0.0094 24.4 16.6 28 118-145 79-106 (264)
66 cd07611 BAR_Amphiphysin_I_II T 29.4 4.4E+02 0.0096 24.0 17.2 192 33-259 9-207 (211)
67 cd07677 F-BAR_FCHSD2 The F-BAR 27.2 5.4E+02 0.012 24.3 16.3 167 82-252 25-235 (260)
68 PF02617 ClpS: ATP-dependent C 25.3 1.9E+02 0.0042 21.5 4.9 43 134-177 20-71 (82)
69 PF02183 HALZ: Homeobox associ 25.0 1.5E+02 0.0032 20.9 4.0 27 154-180 16-42 (45)
70 COG5490 Uncharacterized conser 24.6 2.7E+02 0.006 24.9 6.4 104 23-145 32-148 (158)
71 PF08826 DMPK_coil: DMPK coile 23.1 1.3E+02 0.0029 22.6 3.6 48 165-214 7-55 (61)
72 cd07655 F-BAR_PACSIN The F-BAR 23.0 5.6E+02 0.012 23.0 19.1 158 83-247 37-238 (258)
73 PF13982 YbfN: YbfN-like lipop 22.9 1.3E+02 0.0028 24.7 3.8 16 146-162 3-18 (89)
74 cd04778 HTH_MerR-like_sg2 Heli 20.4 3E+02 0.0066 24.6 6.0 54 112-167 155-208 (219)
75 PF05911 DUF869: Plant protein 20.3 1.1E+03 0.024 25.5 12.1 102 153-260 592-712 (769)
76 TIGR02449 conserved hypothetic 20.0 4.1E+02 0.0089 20.4 6.4 51 154-210 11-61 (65)
No 1
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=100.00 E-value=2.1e-121 Score=799.50 Aligned_cols=209 Identities=69% Similarity=0.984 Sum_probs=206.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhh
Q 024505 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN 127 (266)
Q Consensus 48 Q~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~ 127 (266)
|+|||||+|||||||||||||||||||||||+||||||+||||||||||+||| +++++||||+++||+||++|||||||
T Consensus 1 q~LekLY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~-~~~~~LsrAa~~yG~a~~~mEkEre~ 79 (209)
T cd07607 1 QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENP-SVNTALSRASLHYGSARNQMEKEREN 79 (209)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCC-CcccHHHHHHHHHhHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999 57789999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHH
Q 024505 128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM 207 (266)
Q Consensus 128 l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~M 207 (266)
||++||+||+||||+||||+||||||||+|||||||||+|+||+||+|||+|+||++|||||++||++||+||+||||||
T Consensus 80 l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~M 159 (209)
T cd07607 80 LHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSM 159 (209)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024505 208 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE 257 (266)
Q Consensus 208 a~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~e 257 (266)
++||||||+||++||+||||+|||||++||||||+|||||++|||+||+|
T Consensus 160 ~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~~e 209 (209)
T cd07607 160 NTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHDE 209 (209)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999986
No 2
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.52 E-value=3.5e-12 Score=98.06 Aligned_cols=187 Identities=23% Similarity=0.363 Sum_probs=163.5
Q ss_pred hhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHH
Q 024505 61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPL 140 (266)
Q Consensus 61 KhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePL 140 (266)
+.+=+.|++.+..++..+.+.......|++-+.++|...+..++..|+.+...||.+...++..+.++..-+...|.+||
T Consensus 6 ~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~pL 85 (194)
T cd07307 6 EKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIEPL 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666677777777888889999999999999875544459999999999999999999999999999999999
Q ss_pred HHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 024505 141 RAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA 220 (266)
Q Consensus 141 RaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~a 220 (266)
+..+. ..+.+.+....+|++.|.+.+.--..+.+-+.+.. +..||..++.++++.+.....+..+....|..
T Consensus 86 ~~~~~-~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~-------~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~ 157 (194)
T cd07307 86 KEYLK-KDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKK-------DSSKLAEAEEELQEAKEKYEELREELIEDLNK 157 (194)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 55678899999999999999998887776554421 56899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024505 221 VESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (266)
Q Consensus 221 VEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (266)
+..........-|.+++++...||..+..++++|.
T Consensus 158 ~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~ 192 (194)
T cd07307 158 LEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLL 192 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 99999999999999999999999999999998875
No 3
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.23 E-value=4.9e-09 Score=83.80 Aligned_cols=219 Identities=21% Similarity=0.351 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCccccchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhh------
Q 024505 13 EQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGT------ 86 (266)
Q Consensus 13 eqVAkQQQAV~Kqfg~~gy~~~d~~v~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~------ 86 (266)
-.+.+-.|.|.-.+|++ +...+|+.=-....++..+...+ ++++++ ++.|+....+-..-..
T Consensus 3 K~~~R~~q~~~~k~g~~-----~~t~~D~~f~~~~~~~~~~~~~~---~~l~~~----~~~~~~~~~~~~~~~~~~~~~~ 70 (229)
T PF03114_consen 3 KKINRAKQRVKQKLGKS-----EKTEIDEEFEELEEKFKQLEESI---KKLQKS----LKKYLDSIKKLSASQKNMKSPF 70 (229)
T ss_dssp HHHHHHHHHHHHHHTSH-----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHHCHTHHH
T ss_pred hHHHHHHHHHHHHcCCC-----CCCcCCHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHhhhhhHHhhhhhHHH
Confidence 45667777888888832 33336764323344444444433 344444 4445544444444555
Q ss_pred -hhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 024505 87 -KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (266)
Q Consensus 87 -KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQE 165 (266)
+|++.+..||.+... +..++.+...||.+...++..+.++..-+.+.|.+||+..+ ..+.+...+...+++.|.+
T Consensus 71 ~~l~~~l~~~~~~~~~--~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~--~~~~~i~~~~kkr~~~~ld 146 (229)
T PF03114_consen 71 EELADALIELGSEFSD--DSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL--KEFKEIKKLIKKREKKRLD 146 (229)
T ss_dssp HHHHHHHHHHHHCTST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHH
Confidence 999999999988652 33489999999999999999999999999999999999988 8999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505 166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQ 245 (266)
Q Consensus 166 aE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHq 245 (266)
.+.....+.+-+.+ ...+.. +.++++.+.....+..+-..-|-.+..-...+-..-|..+|++...||+
T Consensus 147 yd~~~~k~~k~~~~----~~~~~~-------~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~ 215 (229)
T PF03114_consen 147 YDSARSKLEKLRKK----KSKSSK-------EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQ 215 (229)
T ss_dssp HHHHHHHHHHCHTT----SSBTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh----hccccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988777765433 212222 6777777777777777777888888877777777889999999999999
Q ss_pred HHHHHHHHhhhhh
Q 024505 246 RVLQILDQLEGEV 258 (266)
Q Consensus 246 rv~~ILd~l~~em 258 (266)
.+.++|..|..++
T Consensus 216 ~~~~~l~~l~~~l 228 (229)
T PF03114_consen 216 QLYQILEELQPQL 228 (229)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998775
No 4
>smart00721 BAR BAR domain.
Probab=98.75 E-value=1.3e-05 Score=66.57 Aligned_cols=227 Identities=17% Similarity=0.248 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccccchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhcccee---eeccchhhhhhhhhh
Q 024505 14 QVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYI---VTGSKQVEIGTKLSE 90 (266)
Q Consensus 14 qVAkQQQAV~Kqfg~~gy~~~d~~v~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~i---s~gsKq~Ei~~KLae 90 (266)
++.|--|.|.-.+|++ +-..+||.=...-++++.+...+ ..|++.+++|+ .....-......+++
T Consensus 5 ~~~R~~q~~~ek~G~~-----e~T~~D~~f~~le~~~~~~~~~~-------~kl~k~~~~y~q~~~~~~~~~~~~~~~~~ 72 (239)
T smart00721 5 QFNRAKQKVGEKVGKA-----EKTKLDEDFEELERRFDTTEAEI-------EKLQKDTKLYLQPNPAVRAKLASQKKLSK 72 (239)
T ss_pred hhHHHHHHHHHHhCCC-----CcCcCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 4555666777888832 34444665333333333333332 35667777777 555555555555555
Q ss_pred hhhh-hcC--CCC-CCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 024505 91 DSRK-YGS--DNT-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (266)
Q Consensus 91 Dc~k-YG~--en~-~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEa 166 (266)
.... |+. ..+ ......+..+-..||.+...+-.-+..+ .-+...+..|++.-+. .-+.++.....++++.|.+-
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~-~~~~~~~~~~kk~~~~~lDy 150 (239)
T smart00721 73 SLGEVYEGGDDGEGLGADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLL-GEFKEIKKARKKLERKLLDY 150 (239)
T ss_pred HHHHHhcCCCCccccCchhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHH-HHhHHHHHHHHHHHhHHHHH
Confidence 5444 333 111 2334457888888999999998888888 6666777778776653 34567888888888888888
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQR 246 (266)
Q Consensus 167 E~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqr 246 (266)
++.-..+.+=+.+.+ .+.+- ||..||.+|...+.....+.-+...-|..+.+=-.-.-+.-|.+.+++...||..
T Consensus 151 D~~~~kl~~~~~~~~----~~~~~-kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~ 225 (239)
T smart00721 151 DSARHKLKKAKKSKE----KKKDE-KLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRE 225 (239)
T ss_pred HHHHHHHHHHHHhcc----CChhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 877666654333311 22233 9999999999999999999999999999997777766788999999999999999
Q ss_pred HHHHHHHhhhhhh
Q 024505 247 VLQILDQLEGEVS 259 (266)
Q Consensus 247 v~~ILd~l~~emv 259 (266)
+..+|.+|...|.
T Consensus 226 ~~~~l~~l~~~l~ 238 (239)
T smart00721 226 SYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987763
No 5
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=97.93 E-value=0.0014 Score=58.01 Aligned_cols=196 Identities=19% Similarity=0.286 Sum_probs=137.7
Q ss_pred hHHHhHH-HHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHH
Q 024505 41 EAELHQH-QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARA 119 (266)
Q Consensus 41 E~Elq~H-Q~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~ 119 (266)
|..+.+| ..|+||+.+ +-+++..|.-.++--..+++.-++.|..-...++..++.+-..||.+-.
T Consensus 8 ee~l~~~~~~l~Kl~K~--------------~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~ 73 (215)
T cd07604 8 EESLEGDRVGLQKLKKA--------------VKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTK 73 (215)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHH
Confidence 3344443 467777654 4455667777777777888888888876443333358888899999999
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhh-hHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCC-CC-----hhhhh
Q 024505 120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-HLAQRYDRMRQEAEAQAIEVSKRQAK-VRETP-GN-----PDLAL 191 (266)
Q Consensus 120 ~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR-hLaqrYdRmRQEaE~qa~eV~rRq~k-~re~~-gn-----~e~~~ 191 (266)
.|++.+++|..-+..-|..||-..+.+ .|.+++ .+..+||+-+.+-|.-..-+.|.+.+ +++.. .- +|...
T Consensus 74 El~~~~~~L~~~~~~~i~~pL~~f~k~-dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e~~~~e~~~ 152 (215)
T cd07604 74 ELAALFKNLMQNLNNIIMFPLDSLLKG-DLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTEITGAEIAE 152 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchhhhhhhHHH
Confidence 999999999999999999999999998 778887 99999999999888765555554333 11100 00 12222
Q ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024505 192 KLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEV 258 (266)
Q Consensus 192 KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~em 258 (266)
=|+.+....++. =-+=...+..|++-+-.==|+.|++.+.|--+|++.-.+.|++++-=|
T Consensus 153 ~l~~~R~~F~~~-------~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~ 212 (215)
T cd07604 153 EMEKERRMFQLQ-------MCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI 212 (215)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 223322222221 112255777788777777889999999999999999999999987543
No 6
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.62 E-value=0.0052 Score=54.42 Aligned_cols=178 Identities=13% Similarity=0.188 Sum_probs=134.4
Q ss_pred hhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcC
Q 024505 67 IVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG 146 (266)
Q Consensus 67 IVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~G 146 (266)
+|+.+-++|..|....--..+++..-+.+|.+.+ .+..++.+-..|+.+-..|++.|..|+.-...-+..||-..+.+
T Consensus 21 l~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~--~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~ 98 (200)
T cd07639 21 LVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGP--KDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKE 98 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666677777777778888888887643 33347777788999999999999999999999999999998876
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 024505 147 APLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQ 226 (266)
Q Consensus 147 aPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQ 226 (266)
+|-+++....+||+..+.-+.-..-..+ ++ -.-| .-++.|+.-|.--++.-.-.-=+=+..+..|++-.-
T Consensus 99 -dl~~vKe~kK~FdK~s~~~d~al~K~~~----~~--k~k~---~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKk 168 (200)
T cd07639 99 -DLRGFRDARKEFERGAESLEAALQHNAE----TP--RRKA---QEVEEAAAALLGARATFRDRALDYALQINVIEDKKK 168 (200)
T ss_pred -hhHHHHHHhhhHhhcchhHHHHHHHHhh----cc--ccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999988875322221 11 0011 134666666776676666666666777777877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024505 227 RLTLQRLIAMVEAERTYHQRVLQILDQLEG 256 (266)
Q Consensus 227 rlTlQRLiaMVeaEr~YHqrv~~ILd~l~~ 256 (266)
=-=|+.|++.+.|=.+|++.--++|++|+.
T Consensus 169 fefle~ll~~m~a~~tfF~qG~ell~~l~~ 198 (200)
T cd07639 169 FDILEFMLQLMEAQASFFQQGHEALSALHQ 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 777899999999999999999999998863
No 7
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=97.55 E-value=0.014 Score=52.55 Aligned_cols=162 Identities=15% Similarity=0.232 Sum_probs=111.5
Q ss_pred hhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 024505 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (266)
Q Consensus 87 KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEa 166 (266)
-|+..--+||.+=+ .++.|.+|-..||.+-+.+=.+|.++...+-+.|.+||+....+- -.-+.+-|.-+
T Consensus 61 ~Lg~~M~~~g~~l~--~~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~d--------ik~i~k~RKkL 130 (244)
T cd07595 61 GLAQSMLESSKELP--DDSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVE--------IPNIQKQKKRL 130 (244)
T ss_pred HHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 45555667777753 455799999999999999999999999999999999999876521 23445555555
Q ss_pred HHH--HHHHHHHHhh-h-cCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505 167 EAQ--AIEVSKRQAK-V-RETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERT 242 (266)
Q Consensus 167 E~q--a~eV~rRq~k-~-re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~ 242 (266)
+.- .-|.+|++.+ . |+++ ...+..|....+..|.+...-+..---.|+..|-.|=+=-- =-+.-|..+|+|...
T Consensus 131 e~~RLd~D~~k~r~~ka~k~~~-~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~-e~~~~l~~lv~aQl~ 208 (244)
T cd07595 131 SKLVLDMDSARSRYNAAHKSSG-GQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFLAKEA-EIASYLIDLIEAQRE 208 (244)
T ss_pred hhhhHHHHHHHHHHHhcccccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHH
Confidence 543 3455565553 2 3333 34455666555555555555555555566667765533210 124568999999999
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 024505 243 YHQRVLQILDQLEGEVSN 260 (266)
Q Consensus 243 YHqrv~~ILd~l~~emvs 260 (266)
||.+.++||+.+-.+|-.
T Consensus 209 YH~~a~e~L~~l~~~l~~ 226 (244)
T cd07595 209 YHRTALSVLEAVLPELQE 226 (244)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988754
No 8
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.47 E-value=0.016 Score=50.77 Aligned_cols=179 Identities=12% Similarity=0.237 Sum_probs=131.6
Q ss_pred hhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhh
Q 024505 65 RDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMV 144 (266)
Q Consensus 65 rdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv 144 (266)
..|++++-++|..|.....-...++..-..+|.+ |..+..++-+-..||.+-..|+..+..|+.-...-|.+||+..+
T Consensus 19 ~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~--~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~ 96 (200)
T cd07603 19 EKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDY--FRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFV 96 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777777677777777777776 44455688888899999999999999999999999999999999
Q ss_pred cCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 024505 145 LGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQ 224 (266)
Q Consensus 145 ~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQ 224 (266)
.+ .|-+.+-+..+||+.-..-++-..--+. .+|.| | .-++.|+.-|..-++.---.-=+=...+..|.+-
T Consensus 97 k~-dL~~vKE~kk~Fdk~s~~yd~al~k~~~-~~K~K-----~---~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~k 166 (200)
T cd07603 97 KE-DIKKVKESKKHFEKISDDLDNALVKNAQ-APRSK-----P---QEAEEATNILTATRSCFRHTALDYVLQINVLQAK 166 (200)
T ss_pred HH-hhHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCC-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 5778899999999999888875442111 22222 1 1344455555555555544444556677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024505 225 QQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (266)
Q Consensus 225 QQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (266)
.-=-=|+.|++.+.|=-+|.+.-.+++++|+
T Consensus 167 Kk~e~le~ll~~~~A~~tff~qG~el~~dl~ 197 (200)
T cd07603 167 KRHEILSTLLSYMHAQFTFFHQGYDLLEDLE 197 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 6666788899999999999888888888775
No 9
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.46 E-value=0.016 Score=52.99 Aligned_cols=200 Identities=13% Similarity=0.159 Sum_probs=121.6
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhccceeee--ccchhhhh-----hhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHH
Q 024505 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVT--GSKQVEIG-----TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARA 119 (266)
Q Consensus 47 HQ~LekLY~STRaaKhFQrdIVRgvEG~is~--gsKq~Ei~-----~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~ 119 (266)
.++|||---+|+.. =-+|++-++.++-- |+.-=-.. +-|++.+-+||.+=+ .++.|.+|-..||.+-+
T Consensus 17 ~~~le~r~D~~k~~---~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~L~q~M~~~g~elg--~~s~lg~aL~~~gea~~ 91 (248)
T cd07619 17 LLQVEKRLELVKQV---SHSTHKKLTACLQGQQGVDADKRSKKLPLTTLAQCMVEGAAVLG--DDSLLGKMLKLCGETED 91 (248)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhCCCcHHHHHHhccCCCHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHH
Confidence 45666665555443 34666666655532 11100111 248999999999964 35579999999999999
Q ss_pred HHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCC--CChh-hhhhHH
Q 024505 120 QMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAK--VRETP--GNPD-LALKLD 194 (266)
Q Consensus 120 ~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k--~re~~--gn~e-~~~KLq 194 (266)
.|=.+|.++--.+-..|.+||+....+- |-.+-|-...-...|-+. |..|+|.+ ++.++ +|.+ +..|.+
T Consensus 92 kla~a~~~~d~~i~~~fl~PL~~~le~d-lk~I~k~RK~Le~~RLD~-----D~~K~r~~~a~~~~~~~~~~~~~~~k~e 165 (248)
T cd07619 92 KLAQELILFELQIERDVVEPLYVLAEVE-IPNIQKQRKHLAKLVLDM-----DSSRTRWQQSSKSSGLSSNLQPTGAKAD 165 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhHhhH-----HHHHHHHHhccccccccccccCCCCccH
Confidence 9999999999999999999999887743 222222222333333332 23444433 11111 1111 133444
Q ss_pred HHHHHHHHHHHHHH----HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024505 195 AAEVKLHDLKSNMA----ILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEVSNCS 262 (266)
Q Consensus 195 ~AE~Kl~Elks~Ma----~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~emvse~ 262 (266)
.+...+.+....+. .+=-++..-|.-+..|=.. |+..|+|=-.||.+.++||+.+..+|-.-+
T Consensus 166 ~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~-----l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~ 232 (248)
T cd07619 166 ALREEMEEAANRMEICRDQLSADMYSFVAKEIDYANY-----FQTLIEVQAEYHRKSLELLQSVLPQIKAHQ 232 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444 2223333334444443322 999999999999999999999998876544
No 10
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.38 E-value=0.025 Score=49.86 Aligned_cols=183 Identities=15% Similarity=0.206 Sum_probs=139.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHH----HHHHHhhHHHHHHH
Q 024505 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLS----KAALSYGRARAQME 122 (266)
Q Consensus 47 HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~La----rAa~~yg~a~~~mE 122 (266)
-.+|+|||.+.+.--+=+++ -.--...++..-..||.. +.+..+. .+-..|+.+-..|+
T Consensus 14 ~~~~~Kl~K~~~~~~~a~~~--------------~~~a~~~Fa~~L~~f~~~---~dD~~~~a~gg~~l~kF~~~l~ei~ 76 (202)
T cd07606 14 RDRSLKLYKGCRKYRDALGE--------------AYDGDSAFAESLEEFGGG---HDDPISVAVGGPVMTKFTSALREIG 76 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhcCC---CCChHHHhccchHHHHHHHHHHHHH
Confidence 45778888776652222222 222334455666666642 2333333 46678999999999
Q ss_pred HHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHH
Q 024505 123 KERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHD 202 (266)
Q Consensus 123 kEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~E 202 (266)
..|+.|+.-...-+..||...+. --|-+++.+..+||+-..+-++-..-.+.-..+.|+ .+++.|+..|.-
T Consensus 77 ~~~~~L~~q~~~~l~~pL~~F~k-~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~--------~~~~ea~~~l~~ 147 (202)
T cd07606 77 SYKEVLRSQVEHMLNDRLAQFAD-TDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKP--------EILAAAEEDLGT 147 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCch--------HHHHHHHHHHHH
Confidence 99999999999999999999998 567789999999999999999866655543333221 346788888988
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024505 203 LKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (266)
Q Consensus 203 lks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (266)
.++..--..-+=..++..|++-.-=-.|+.|++.+.|=-+|++.-.++|.+|+
T Consensus 148 ~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~ 200 (202)
T cd07606 148 TRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLE 200 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888888888889999999988888899999999999999999999998875
No 11
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.31 E-value=0.023 Score=51.42 Aligned_cols=222 Identities=17% Similarity=0.226 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcc--ccchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhccceeeeccc-h-hhhhhhh
Q 024505 13 EQVARQQQAVFKQFGGGGYGGSDNV--VTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSK-Q-VEIGTKL 88 (266)
Q Consensus 13 eqVAkQQQAV~Kqfg~~gy~~~d~~--v~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsK-q-~Ei~~KL 88 (266)
+.|=+-=+.|-+.|..-||--.-++ .+.+---.-+.+..-|=..| ...+.|.-++- ..++. + =-...-|
T Consensus 11 k~~~~~~l~vt~~ye~esYDYP~n~~es~~~~~~~~~~k~~~l~~~t-~~~e~~~~l~~------~~~~~~~pkTl~~aL 83 (242)
T cd07600 11 KLVYKKILKVTKTYENESYDYPPNLTESISDFSKTIGSKVSELSKAT-SPTEAQKVLLG------TPAPAKLPKTLNHAL 83 (242)
T ss_pred HHHHHHHHHHHHhhcccCCCCCCCchHHHHHHHHhhHHHHHHHhhcC-ChhhhhhhhcC------CCCCCCCCCcHHHHH
Confidence 4455556788899998888322221 12222222344444444433 34556655532 11211 1 1233456
Q ss_pred hhhhhhhcCCCCC---CcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 024505 89 SEDSRKYGSDNTC---TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (266)
Q Consensus 89 aeDc~kYG~en~~---~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQE 165 (266)
++.+-++|.+-.. .+++.|++|-..||.+...|-.-|..+-..+.+-+.+||+.-..+- -..+.+.|.-
T Consensus 84 s~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d--------~k~i~k~RKk 155 (242)
T cd07600 84 SRAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTS--------FQKAHKARKK 155 (242)
T ss_pred HHHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 6666666655332 2367899999999999999999999999999999999999876542 2356677777
Q ss_pred HHHHHHHHHHHHhhhcCC---CCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505 166 AEAQAIEVSKRQAKVRET---PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERT 242 (266)
Q Consensus 166 aE~qa~eV~rRq~k~re~---~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~ 242 (266)
+|.--.+.--.+.|.+.. ...++--..++.||.++.+-+ -.|.-.|..|-.-= --++=|..+|+|.-.
T Consensus 156 le~~RLd~D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~-------E~a~~~M~~il~~~--e~i~~L~~fv~AQl~ 226 (242)
T cd07600 156 VEDKRLQLDTARAELKSAEPAEKQEAARVEVETAEDEFVSAT-------EEAVELMKEVLDNP--EPLQLLKELVKAQLA 226 (242)
T ss_pred HHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhH-------HHHHHHHHHHHhhh--HHHHHHHHHHHHHHH
Confidence 776554433333333222 122333455667777776655 34445555443331 146778899999999
Q ss_pred HHHHHHHHHHHhhhhh
Q 024505 243 YHQRVLQILDQLEGEV 258 (266)
Q Consensus 243 YHqrv~~ILd~l~~em 258 (266)
||....++|..|..++
T Consensus 227 Yh~~~~e~L~~l~~~~ 242 (242)
T cd07600 227 YHKTAAELLEELLSVL 242 (242)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999987653
No 12
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.29 E-value=0.034 Score=48.90 Aligned_cols=144 Identities=15% Similarity=0.271 Sum_probs=113.3
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 024505 103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRE 182 (266)
Q Consensus 103 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re 182 (266)
.+..++.+-..||.+-..|+..|..|+.-...-+.+||+.-+.+ .|-..+-+..+||+....-++-..-.+ ++|.+
T Consensus 55 gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~-dL~~~KE~rK~Fdk~se~yd~al~k~~--~~k~k- 130 (200)
T cd07637 55 KDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKE-DVRKFKETKKQFDKVREDLEIALVKNA--QAPRH- 130 (200)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCC-
Confidence 34457778888999999999999999999999999999999886 567788999999999888876654432 22322
Q ss_pred CCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024505 183 TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 256 (266)
Q Consensus 183 ~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~ 256 (266)
.| .-++.|+.-|.+-+++---.-=+=..++..|++-.-=-=|+.|++.+.|=-+|+..--+++++|+.
T Consensus 131 ---k~---~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~p 198 (200)
T cd07637 131 ---KP---HEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDP 198 (200)
T ss_pred ---Ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 12 234666666776666665555566778888888777777899999999999999999999998864
No 13
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=97.26 E-value=0.023 Score=50.85 Aligned_cols=182 Identities=12% Similarity=0.170 Sum_probs=126.0
Q ss_pred hhhhhhccceeeeccchhhhhhhhhhhhhhhcCCC---CCCcch-HHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHH
Q 024505 65 RDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN---TCTSGN-TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPL 140 (266)
Q Consensus 65 rdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en---~~~~~~-~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePL 140 (266)
++||+..-++|..|..=.--..+++.--+.+|-+- +.+++. .++-+-..|+.--..|+.+|+.|+.-...-|..||
T Consensus 19 k~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~l~~pL 98 (207)
T cd07634 19 KELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDVLIAPL 98 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333334444444444221 112222 58889999999999999999999999999999999
Q ss_pred HHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q 024505 141 RAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAA 220 (266)
Q Consensus 141 RaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~a 220 (266)
-..+.+ +|-+++....+||+-...-++-..--.. .+|.+ . -.-++.|+.-|.--++.---.-=+=+-.+..
T Consensus 99 ~~f~k~-dl~~vKe~kK~FDK~se~y~~aleK~l~-l~~~k----k---~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~~ 169 (207)
T cd07634 99 EKFRKE-QIGAAKDGKKKFDKESEKYYSILEKHLN-LSAKK----K---ESHLQRADTQIDREHQNFYEASLEYVFKIQE 169 (207)
T ss_pred HHHHHH-HHHHHHHHccchhHHHhHHHHHHHHHHh-ccccC----C---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876 5789999999999999998763322111 11111 1 1245777777777776665555566667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024505 221 VESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (266)
Q Consensus 221 VEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (266)
|++-.-===|+.|++.+.|=.+|.+.-.+++++++
T Consensus 170 vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~ 204 (207)
T cd07634 170 VQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFA 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 77776666789999999999999999999998875
No 14
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=97.24 E-value=0.027 Score=50.29 Aligned_cols=182 Identities=14% Similarity=0.222 Sum_probs=126.5
Q ss_pred hhhhhccceeeeccchhhhhhhhhhhhhhhcCCC---CCCcc-hHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHH
Q 024505 66 DIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDN---TCTSG-NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLR 141 (266)
Q Consensus 66 dIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en---~~~~~-~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLR 141 (266)
.||++.-++|..|..-.---..++..-+-|+-+- +.+.+ ..++.+-..||..-..||.+|+.|+.-....+..||.
T Consensus 20 kLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL~ 99 (207)
T cd07602 20 ELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLENAEEQLIEPLE 99 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455544444444455565555555331 11222 1367778889999999999999999999999999999
Q ss_pred HhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 024505 142 AMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV 221 (266)
Q Consensus 142 aMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aV 221 (266)
.-+. -+|-+++-...+||+-..+-+.-..--+.=..+.|+ .-++.|+.-|.--+++---.-=+=+.++..|
T Consensus 100 ~F~k-~dl~~~ke~kk~FdK~se~~~~al~k~~~lsk~kk~--------~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~v 170 (207)
T cd07602 100 KFRK-EQIGGAKEEKKKFDKETEKFCSSLEKHLNLSTKKKE--------NQLQEADAQLDMERRNFHQASLEYVFKLQEV 170 (207)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 788999999999999998888655432221111111 2356677666666666555555667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024505 222 ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 256 (266)
Q Consensus 222 EaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~ 256 (266)
++-..=-=|+.|++.+.|=-+|...--+++.+++.
T Consensus 171 q~rKkfefle~ll~~m~a~~tff~qG~el~~d~~p 205 (207)
T cd07602 171 QERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFKP 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 87776667888999999999998888888887753
No 15
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=97.22 E-value=0.032 Score=50.46 Aligned_cols=154 Identities=16% Similarity=0.245 Sum_probs=106.0
Q ss_pred hhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 024505 86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (266)
Q Consensus 86 ~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQE 165 (266)
.-|++..-+||.+=. .++.+..|-..||.|.+.|=.-|.+|.....+-+..||+.-..+ --..|..-|.-
T Consensus 72 ~~Lg~~M~~~g~~~g--~~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~--------dik~i~k~RKk 141 (229)
T cd07616 72 ELLGQYMIDAGNEFG--PGTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEG--------DYKTITKERKL 141 (229)
T ss_pred HHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 568888899999854 45579999999999999999999999998899999999998876 22245556666
Q ss_pred HHHHHHH--HHHHHhh-hcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 024505 166 AEAQAIE--VSKRQAK-VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAER 241 (266)
Q Consensus 166 aE~qa~e--V~rRq~k-~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEa-QQQrlTlQRLiaMVeaEr 241 (266)
+|..-.+ ..|++.+ .+.....+..-.+|..||.|+.+-+.-+ ...|--|-. -- =-+.=|.+.|+|.-
T Consensus 142 Le~rRLdyD~~K~r~~kAk~~~~~~~~e~elr~ae~efees~E~a-------~~~m~~i~~~~~--e~~~~L~~lv~AQl 212 (229)
T cd07616 142 LQNKRLDLDAAKTRLKKAKVAEARAAAEQELRITQSEFDRQAEIT-------RLLLEGISSTHA--HHLRCLNDFVEAQM 212 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCcchhhcchHHHHHHHHHHHHHHHHHH-------HHHHHhhhhcCh--HHHHHHHHHHHHHH
Confidence 6665444 4444333 1111222333556777888877654322 222222211 00 02456889999999
Q ss_pred HHHHHHHHHHHHhhhhh
Q 024505 242 TYHQRVLQILDQLEGEV 258 (266)
Q Consensus 242 ~YHqrv~~ILd~l~~em 258 (266)
.||....+||..|..++
T Consensus 213 ~Yh~~~~e~L~~L~~~l 229 (229)
T cd07616 213 TYYAQCYQYMLDLQKQL 229 (229)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999998763
No 16
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=97.06 E-value=0.083 Score=47.29 Aligned_cols=151 Identities=23% Similarity=0.355 Sum_probs=103.5
Q ss_pred hhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 024505 86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (266)
Q Consensus 86 ~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQE 165 (266)
.-|++.+-+||.+=. .++.++.|-..||.|..++=..|..+--.+.+-+.+||+.-..+- -..|...|.-
T Consensus 67 ~~Lg~~M~~~g~elg--~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~d--------ik~i~k~RKk 136 (223)
T cd07592 67 GLLGEVMLKYGRELG--EDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKD--------LKEINHHRKK 136 (223)
T ss_pred cHHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 568899999999964 345799999999999999999999999999999999999654321 1245555665
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 024505 166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAERTYH 244 (266)
Q Consensus 166 aE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEa-QQQrlTlQRLiaMVeaEr~YH 244 (266)
+|..-.+.--.++|... .++ .-|..||.|+.+-+.- |...|-.+-. .-- -+.=|...|+|...||
T Consensus 137 Le~rRLdyD~~k~k~~k---~~e--eEl~~Ae~kfe~s~E~-------a~~~M~~il~~e~e--~~~~L~~lveAQl~Yh 202 (223)
T cd07592 137 LEGRRLDYDYKKRKQGK---GPD--EELKQAEEKFEESKEL-------AENSMFNLLENDVE--QVSQLSALVEAQLDYH 202 (223)
T ss_pred HHHHHHHHHHHHHhccc---Cch--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCchH--HHHHHHHHHHHHHHHH
Confidence 55544433322223221 122 3466777777765432 2233322211 001 1345889999999999
Q ss_pred HHHHHHHHHhhhhhhh
Q 024505 245 QRVLQILDQLEGEVSN 260 (266)
Q Consensus 245 qrv~~ILd~l~~emvs 260 (266)
...++||..|..+|-.
T Consensus 203 ~~~~e~L~~l~~~L~~ 218 (223)
T cd07592 203 RQSAEILEELQSKLQE 218 (223)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
No 17
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=97.04 E-value=0.13 Score=46.35 Aligned_cols=152 Identities=18% Similarity=0.314 Sum_probs=105.1
Q ss_pred hhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 024505 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (266)
Q Consensus 87 KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEa 166 (266)
-|++-.-+||.+=. .++.++.|-..||.|...|=.-|..+...+.+-+.+||+....+- -.-|..-|.-+
T Consensus 73 ~Lg~~M~~~g~~lg--~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~d--------ik~i~k~RKkL 142 (229)
T cd07594 73 QLGQAMIEAGNDFG--PGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGD--------MKTISKERKLL 142 (229)
T ss_pred HHHHHHHHHHhhCC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 68888899999864 345799999999999999999999999999999999999876532 12344555555
Q ss_pred HHHHHHHHHHHhhhcCC---CCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 024505 167 EAQAIEVSKRQAKVRET---PGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAERT 242 (266)
Q Consensus 167 E~qa~eV~rRq~k~re~---~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEa-QQQrlTlQRLiaMVeaEr~ 242 (266)
|..-.+.--.++|.+.+ ...+..-..|+.|+.|..+-+. .|...|-.|-. .- =-+.-|-+.|+|+-.
T Consensus 143 e~rRLd~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF~~~~E-------~a~~~M~~i~~~~~--~~~~~L~~lv~AQl~ 213 (229)
T cd07594 143 ENKRLDLDACKTRVKKAKSAEAIEQAEQDLRVAQSEFDRQAE-------ITKLLLEGISSTHA--NHLRCLRDFVEAQMT 213 (229)
T ss_pred HHHHHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCc--hHHHHHHHHHHHHHH
Confidence 55444333333333322 1113345667778888776543 33344443322 11 124568899999999
Q ss_pred HHHHHHHHHHHhhhh
Q 024505 243 YHQRVLQILDQLEGE 257 (266)
Q Consensus 243 YHqrv~~ILd~l~~e 257 (266)
||....+||..|..+
T Consensus 214 Yh~q~~e~L~~l~~~ 228 (229)
T cd07594 214 YYAQCYQYMDDLQRQ 228 (229)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999765
No 18
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=96.99 E-value=0.078 Score=47.94 Aligned_cols=150 Identities=19% Similarity=0.265 Sum_probs=101.9
Q ss_pred hhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 024505 86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (266)
Q Consensus 86 ~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQE 165 (266)
.-|++.--+||.+=+ .++.+..|-..||.|.++|=..+..+--...+-+.+||+....+- -.-|..-|.-
T Consensus 67 ~~Lg~~M~~~G~elg--~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~d--------ik~i~k~RKk 136 (223)
T cd07613 67 ALLAEAMLKFGRELG--DECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKD--------LREIQHHLKK 136 (223)
T ss_pred hHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 346777778888864 455799999999999999999999999999999999999864332 1133444554
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 024505 166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERT 242 (266)
Q Consensus 166 aE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aV---EaQQQrlTlQRLiaMVeaEr~ 242 (266)
.|..-.+.--.+.|.. .. + -.-++.|+.|..+-+.-.. ..|-.+ |.-| +.=|.+.|||+-.
T Consensus 137 Le~rRLd~D~~K~r~~--k~-~--eeElr~A~~kFees~E~a~-------~~M~n~l~~e~e~----~~~L~~fveAQl~ 200 (223)
T cd07613 137 LEGRRLDFDYKKKRQG--KI-P--DEELRQALEKFDESKEIAE-------SSMFNLLEMDIEQ----VSQLSALVQAQLE 200 (223)
T ss_pred HHHHHHhHHHHHHhCC--CC-c--HHHHHHHHHHHHHHHHHHH-------HHHHHHHHcCchH----HHHHHHHHHHHHH
Confidence 4444333322222222 21 1 3457788888887665322 222221 1111 2368899999999
Q ss_pred HHHHHHHHHHHhhhhhhhc
Q 024505 243 YHQRVLQILDQLEGEVSNC 261 (266)
Q Consensus 243 YHqrv~~ILd~l~~emvse 261 (266)
||+..++||..|..++-.-
T Consensus 201 Yh~qa~eiL~~l~~~l~~~ 219 (223)
T cd07613 201 YHKQATQILQQVTVKLEDR 219 (223)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987643
No 19
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=96.98 E-value=0.1 Score=47.74 Aligned_cols=196 Identities=14% Similarity=0.223 Sum_probs=125.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchh--h------hhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHH
Q 024505 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQV--E------IGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRAR 118 (266)
Q Consensus 47 HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~--E------i~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~ 118 (266)
-++||+---+|+.. =-+|++.++.+. -|..-. | -..-|++.--+||.+=+ .++.+.+|-..||.+-
T Consensus 17 ~~~le~r~D~~k~~---~~~i~k~~~~~l-qpnp~~r~ek~~kk~p~~~Lgq~M~e~~~~lg--~~s~~g~aL~~~gea~ 90 (246)
T cd07618 17 LLQIERRLDTVRSV---SHNVHKRLIACF-QGQVGTDAEKRHKKLPLTALAQNMQEGSAQLG--EESLIGKMLDTCGDAE 90 (246)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHc-CCChHHHHHHHhccCCHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHH
Confidence 45666666665543 335666666553 121111 1 13456777778888854 3556999999999999
Q ss_pred HHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCC-hhhhhh---
Q 024505 119 AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKV--RETPGN-PDLALK--- 192 (266)
Q Consensus 119 ~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~--re~~gn-~e~~~K--- 192 (266)
+.+=.+|-++--.+-..|.+||+....+- |-++-+....-...|-+.+ ..|++.+. +.+++| ..+..|
T Consensus 91 ~kla~~~~~~d~~ie~~fl~PL~~~le~d-lk~I~K~RkkLe~~RLD~D-----~~K~r~~~a~~~~~~~~~~~~~K~~~ 164 (246)
T cd07618 91 NKLAFELSQHEVLLEKDILDPLNQLAEVE-IPNIQKQRKQLAKLVLDWD-----SARGRYNQAHKSSGTNFQAMPSKIDM 164 (246)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhHHhhHH-----HHHHHHHhccccCccccccccchhhh
Confidence 99999998888888889999999887743 2233333333344444433 33443321 112222 122445
Q ss_pred ----HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 024505 193 ----LDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEVSNCS 262 (266)
Q Consensus 193 ----Lq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~emvse~ 262 (266)
+..|+.|+.+-|...+. ++-.-| +=|..+ +.=|+..|+|=..||...++||+.+..+|-.-+
T Consensus 165 l~ee~e~a~~k~E~~kD~~~~---dm~~~l-~~e~e~----~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~~ 230 (246)
T cd07618 165 LKEEMDEAGNKVEQCKDQLAA---DMYNFA-SKEGEY----AKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQ 230 (246)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHH-HcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888877665 444333 333333 345889999999999999999999999987766
No 20
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=96.93 E-value=0.087 Score=47.68 Aligned_cols=183 Identities=15% Similarity=0.241 Sum_probs=123.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhccceeeec--cch---------------hhhhhhhhhhhhhhcCCCCCCcchHHHH
Q 024505 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTG--SKQ---------------VEIGTKLSEDSRKYGSDNTCTSGNTLSK 109 (266)
Q Consensus 47 HQ~LekLY~STRaaKhFQrdIVRgvEG~is~g--sKq---------------~Ei~~KLaeDc~kYG~en~~~~~~~Lar 109 (266)
.++|++.--+|+.. =.+|++.+|-|+--- ++- .--..-|++..-+||.+-. .++.+..
T Consensus 19 f~~l~~~~D~tk~~---~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g--~~s~~G~ 93 (220)
T cd07617 19 FENLLARADSTKNW---TEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTEAANDFG--PGTPYGK 93 (220)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcC--CCCchHH
Confidence 45666666666543 346666666655321 110 1113347888889998854 3456999
Q ss_pred HHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhh
Q 024505 110 AALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDL 189 (266)
Q Consensus 110 Aa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~ 189 (266)
|-..||.|...|=.-+..+.-...+-+.+||+....+- -.-|..-|.-+|..-.+.-..++|.+. +|
T Consensus 94 aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~d--------lk~i~k~RKkLe~rRLd~D~~K~r~~k----ae- 160 (220)
T cd07617 94 TLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGD--------WKTISKERRLLQNRRLDLDACKARLKK----AE- 160 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhc----cH-
Confidence 99999999999999999999999999999999876542 123556667777665555555555442 34
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024505 190 ALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVE-SQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE 257 (266)
Q Consensus 190 ~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVE-aQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~e 257 (266)
..|+.|+.|..+-+. .+. ..|--|- ..- =.+.=|-+.|+|...||....+||..|..+
T Consensus 161 -~elr~A~~kf~~~~E-~a~------~~M~~il~~~~--e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 219 (220)
T cd07617 161 -HELRVAQTEFDRQAE-VTR------LLLEGISSTHV--NHLRCLHEFVEAQATYYAQCYRHMLDLQKQ 219 (220)
T ss_pred -HHHHHHHHHHHHHHH-HHH------HHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378899999887544 222 2232221 100 125568899999999999999999999875
No 21
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=96.92 E-value=0.13 Score=45.98 Aligned_cols=157 Identities=16% Similarity=0.261 Sum_probs=107.2
Q ss_pred hhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHH
Q 024505 85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQ 164 (266)
Q Consensus 85 ~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQ 164 (266)
..-|++.--.||.+=+ .++.+..|-..||.|.++|-...++|..-+.+-+.+||+-.+. |-+ -|..-|.
T Consensus 53 ~~~Lg~~M~~~g~~lg--~dS~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~-----~~k----~i~k~RK 121 (215)
T cd07593 53 VEALGLVMINHGEEFP--QDSEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA-----EMK----EYHSARK 121 (215)
T ss_pred HHHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----HHHHHHH
Confidence 4467777778888864 4556999999999999999999999999999999999986652 222 4566677
Q ss_pred HHHHHHHHHHHHHhhhcCCC-CChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 024505 165 EAEAQAIEVSKRQAKVRETP-GNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVES-QQQRLTLQRLIAMVEAERT 242 (266)
Q Consensus 165 EaE~qa~eV~rRq~k~re~~-gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEa-QQQrlTlQRLiaMVeaEr~ 242 (266)
-+|..-.+.--.++|.+.+. ..+..-.-|+.|+.|..+-+.- |...|-.|-. .-- -+.=|...|+|.-.
T Consensus 122 kLe~rRLdyD~~ksk~~kak~~~~~~eeElr~Ae~kfees~E~-------a~~~M~~i~~~e~e--~~~~L~~lv~AQl~ 192 (215)
T cd07593 122 KLESRRLAYDAALTKSQKAKKEDSRLEEELRRAKAKYEESSED-------VEARMVAIKESEAD--QYRDLTDLLDAELD 192 (215)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcChH--HHHHHHHHHHHHHH
Confidence 77766665555554443221 1222334456677777665432 3333433321 111 13457889999999
Q ss_pred HHHHHHHHHHHhhhhhhhc
Q 024505 243 YHQRVLQILDQLEGEVSNC 261 (266)
Q Consensus 243 YHqrv~~ILd~l~~emvse 261 (266)
||...++||..|..+.-+.
T Consensus 193 Yh~q~~e~L~~l~~~~~~~ 211 (215)
T cd07593 193 YHQQSLDVLREVRQSWPSK 211 (215)
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 9999999999999876543
No 22
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.72 E-value=0.18 Score=44.82 Aligned_cols=183 Identities=12% Similarity=0.230 Sum_probs=134.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhh
Q 024505 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN 127 (266)
Q Consensus 48 Q~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~ 127 (266)
.+|+|||..-+.--+.+++-+.+...|+. |- .|-.+||++.+ ..+++|. .|+.+-..|+..|+.
T Consensus 16 ~~l~Kl~K~~~~~~dag~~~~~a~~~F~~-~l----------~d~~~~~~~De-~i~~~l~----kF~~~l~ei~~~~~~ 79 (200)
T cd07638 16 LKLDKLVKLCIGMIDAGKAFCQANKQFMN-GI----------RDLAQYSSKDA-VIETSLT----KFSDTLQEMINYHTI 79 (200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HH----------HHHHHhCCcch-hhHHHHH----HHHHHHHHHHHHHHH
Confidence 57888888887777777777666555532 11 23455777765 2344454 599999999999999
Q ss_pred HHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHH
Q 024505 128 LLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNM 207 (266)
Q Consensus 128 l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~M 207 (266)
|+.-...-+..||..-+.. +|-+++-...+||+..++-++-..--++= +|.| ..-++.|+.-|.--++.-
T Consensus 80 L~~q~~~~l~~~L~~F~k~-dl~~vke~kk~FdK~s~~~~~aL~K~~~~-~k~k--------~~e~eEa~~~l~~~r~~F 149 (200)
T cd07638 80 LFDQAQRSIKAQLQTFVKE-DLRKFKDAKKQFDKVSEEKENALVKNAQV-QRNK--------QHEVEEATNILTATRKCF 149 (200)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhHHHHHHHHHhccC-CcCc--------hHHHHHHHHHHHHHHHHH
Confidence 9999999999999887764 66789999999999997666543221111 0111 123466777777777777
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024505 208 AILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 256 (266)
Q Consensus 208 a~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~ 256 (266)
.-..=+=+.++..|++-.-=-=|+.|++.+.|=.+|...--++|++++-
T Consensus 150 ~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~p 198 (200)
T cd07638 150 RHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELGP 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 6666677888888888887778899999999999999999999988863
No 23
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=96.53 E-value=0.27 Score=44.50 Aligned_cols=148 Identities=19% Similarity=0.297 Sum_probs=102.0
Q ss_pred hhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 024505 87 KLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (266)
Q Consensus 87 KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEa 166 (266)
-|++.--+||.+=+ .++.+..|-..||.|...+=..+..+.-...+-+.+||+....+- -.-|..-|.-.
T Consensus 68 ~Lg~~M~~~G~~lg--~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~d--------ik~i~k~RKkL 137 (223)
T cd07615 68 LLGDCMLRYGRELG--EESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKD--------LKEIGHHLKKL 137 (223)
T ss_pred HHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 46777778888854 345699999999999999999999999999999999999654432 11334445545
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 024505 167 EAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTY 243 (266)
Q Consensus 167 E~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aV---EaQQQrlTlQRLiaMVeaEr~Y 243 (266)
|..-.+.--.+.| .+. . .-.-++.|+.|..|-+.- |...|-.+ |.-| +.=|.+.|+|+-.|
T Consensus 138 e~rRLd~D~~K~r--~~k-~--~~eE~~~A~~kfees~E~-------a~~~M~n~le~e~e~----~~~L~~lv~AQl~Y 201 (223)
T cd07615 138 EGRRLDFDYKKKR--QGK-I--PDEEIRQAVEKFEESKEL-------AERSMFNFLENDVEQ----VSQLSVLIEAALDY 201 (223)
T ss_pred HHHHHHHHHHHHc--CCC-C--cHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcChHH----HHHHHHHHHHHHHH
Confidence 5444333333223 222 1 244577888888876542 33344332 1222 34578999999999
Q ss_pred HHHHHHHHHHhhhhhhh
Q 024505 244 HQRVLQILDQLEGEVSN 260 (266)
Q Consensus 244 Hqrv~~ILd~l~~emvs 260 (266)
|+..++||..|..++-.
T Consensus 202 h~~a~eiL~~l~~~l~~ 218 (223)
T cd07615 202 HRQSTEILEDLQSKLQN 218 (223)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988754
No 24
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.46 E-value=0.37 Score=39.23 Aligned_cols=163 Identities=13% Similarity=0.186 Sum_probs=112.3
Q ss_pred hhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHH
Q 024505 88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE 167 (266)
Q Consensus 88 LaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE 167 (266)
|+.-|..++....... ..|+.+-..+|.+...+-.-.+.+....-..+.+||+-++.-.+ -+|.+-.+.+++.++.+
T Consensus 44 lg~~~~~Ls~~e~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~--s~k~~l~~R~~~~~~~~ 120 (218)
T cd07596 44 FGKALIKLAKCEEEVG-GELGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQ--AVKETLDDRADALLTLQ 120 (218)
T ss_pred HHHHHHHHHhhccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3444445554433211 35889999999999998888999999999999999998884322 35555566556666665
Q ss_pred HHHHHHHHHHh---hhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 024505 168 AQAIEVSKRQA---KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR-------LIAMV 237 (266)
Q Consensus 168 ~qa~eV~rRq~---k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQR-------LiaMV 237 (266)
.--..+.+.+. |.+.+++ -+..|...++.++.++...+..+-+..-..-..+..+=.|..-.| |..++
T Consensus 121 ~~~~~l~~k~~~~~kl~~~~~--~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~ 198 (218)
T cd07596 121 SLKKDLASKKAQLEKLKAAPG--IKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFA 198 (218)
T ss_pred HHHHHHHHHHHHHHHHhhcCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554443 4443332 233577788888888888777777776666666666666666555 66788
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024505 238 EAERTYHQRVLQILDQLE 255 (266)
Q Consensus 238 eaEr~YHqrv~~ILd~l~ 255 (266)
+....||+.+++++..+.
T Consensus 199 ~~qi~~~~~~~~~W~~~~ 216 (218)
T cd07596 199 RLQVQYAEKIAEAWESLL 216 (218)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999988764
No 25
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=96.45 E-value=0.27 Score=44.18 Aligned_cols=186 Identities=11% Similarity=0.216 Sum_probs=140.3
Q ss_pred hhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCC---CCCCcch-HHHHHHHHhhHHHHHHHHHHhhHHHHHhhhh
Q 024505 61 KHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSD---NTCTSGN-TLSKAALSYGRARAQMEKERGNLLKALGTQV 136 (266)
Q Consensus 61 KhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~e---n~~~~~~-~LarAa~~yg~a~~~mEkEre~l~r~L~~QV 136 (266)
.+|=++|++..-++|..|..=.---.+++..-+-|+-+ ++.+++. .++.+-..|+.+-..||++|+.|+.--...+
T Consensus 15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l 94 (207)
T cd07636 15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASEVL 94 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888877765555556677766666632 2223333 3778888999999999999999999999999
Q ss_pred hhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHH
Q 024505 137 AEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAA 216 (266)
Q Consensus 137 ~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~a 216 (266)
..||-.-+- -+|..++.-..+||+-.+.-++-..-..-=..| +.+ ..++.|+.-|.--+++---..=+=+-
T Consensus 95 ~~~L~~F~k-edi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k------~K~--~~~eEA~~~L~~~r~~F~~~sLdYV~ 165 (207)
T cd07636 95 ITPLEKFRK-EQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSK------KKE--SQLHEADSQVDLVRQHFYEVSLEYVF 165 (207)
T ss_pred HHHHHHHHH-HHHHHHHHHhhhHhhhhhHHHHHHHHHhcCccc------CCc--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988765 466789999999999999888654332211011 112 26889999999888888777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024505 217 AMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (266)
Q Consensus 217 Am~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (266)
.+..|++-.-=-=|+.|++.+.|=.+|...--+++.++.
T Consensus 166 qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~ 204 (207)
T cd07636 166 KVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFS 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 888888877777789999999999999988888887764
No 26
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.27 E-value=0.76 Score=40.79 Aligned_cols=154 Identities=17% Similarity=0.238 Sum_probs=99.0
Q ss_pred hhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcC-CCchhhhhHH-HHHHHH
Q 024505 85 GTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG-APLDDARHLA-QRYDRM 162 (266)
Q Consensus 85 ~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~G-aPLEDARhLa-qrYdRm 162 (266)
+.-|+.-|.-||+.- + ..|++|-..|+..-..|+.=|+.-...+-..|.+||+..+.= ...-|++..+ ..|+++
T Consensus 41 ~~~fak~~~~la~~E---~-~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~~~~ar~~~ 116 (211)
T cd07598 41 GDELAKSINAYADTE---N-PSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGTICKHARDDLKNTFTARNKE 116 (211)
T ss_pred HHHHHHHHHHHHhcc---C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788898763 2 359999999999999999888888888888999999875432 2233333211 123332
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 024505 163 RQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR-------LIA 235 (266)
Q Consensus 163 RQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQR-------Lia 235 (266)
.+ -...-.|.|.. ||.+-.++..||++|+.-+.-..-.. ..++.+=.|.--+| |..
T Consensus 117 ~~--------~~~~leklk~~--~~~d~~~i~eaE~~l~~a~~d~~r~s-------~~l~ee~~rFe~~k~~d~K~~l~~ 179 (211)
T cd07598 117 LK--------QLKQLEKLRQK--NPSDRQIISQAESELQKASVDANRST-------KELEEQMDNFEKQKIRDIKTIFSD 179 (211)
T ss_pred HH--------HHHHHHHHHhc--CCchhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 11223344433 44445577789999988776333333 33343333333333 347
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 024505 236 MVEAERTYHQRVLQILDQLEGEVS 259 (266)
Q Consensus 236 MVeaEr~YHqrv~~ILd~l~~emv 259 (266)
.|+.|=.||..+++++..+...+.
T Consensus 180 fv~~~m~~~~kale~~~~~~~~~~ 203 (211)
T cd07598 180 FVLIEMLFHAKALEVYTAAYQDIQ 203 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999988876543
No 27
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=96.22 E-value=0.47 Score=42.64 Aligned_cols=140 Identities=11% Similarity=0.219 Sum_probs=106.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 024505 107 LSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGN 186 (266)
Q Consensus 107 LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn 186 (266)
++..-..|+++...++.+|+-|+.-+...+..||-.-+- -+|-.++-...+||+-..+-++-..-.+.=.+|.|+.
T Consensus 65 i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL~~F~k-edl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk~~--- 140 (207)
T cd07635 65 IDASLQEFSNFLKNLEEQREIMALNVTETLIKPLERFRK-EQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKKKEP--- 140 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCCcc---
Confidence 467778999999999999999999999999999988754 4678899999999999999987766544443333321
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024505 187 PDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLE 255 (266)
Q Consensus 187 ~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~ 255 (266)
-++.|+.-|.--++.---..=+=+.++..|++-..=-=|+.|++.+.|=.+|...--+++.++.
T Consensus 141 -----e~~EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~ 204 (207)
T cd07635 141 -----QLQEADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFN 204 (207)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 2445666555555544444445566777777766666788999999999999988888888764
No 28
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.09 E-value=1 Score=40.56 Aligned_cols=196 Identities=17% Similarity=0.247 Sum_probs=127.6
Q ss_pred CCCccccchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHH
Q 024505 33 GSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAAL 112 (266)
Q Consensus 33 ~~d~~v~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~ 112 (266)
..|..+-|++ ++.+.||+ +++..|+|.-+=.+.+-....-+.-|+..|++ | |+.++ +..+-.++.
T Consensus 8 T~D~~fe~~~--~rf~~lE~------~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~-~--~~~~~----~~~~~~~~e 72 (225)
T cd07590 8 TVDRELEREV--QKLQQLES------TTKKLYKDMKKYIEAVLALSKAEQRLSQDLAS-G--PLCED----NDELRNLVE 72 (225)
T ss_pred CCChHHHHHH--HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-c--ccCCC----ChHHHHHHH
Confidence 4466653332 34555553 45667776655555555555666677777776 3 65543 123667999
Q ss_pred HhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhh-----hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCh
Q 024505 113 SYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-----HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNP 187 (266)
Q Consensus 113 ~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR-----hLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~ 187 (266)
.|...-..|+.--..++..+.+.|.+||.....=-|.-..+ |...=|||.|..++.. +.|-+ ..
T Consensus 73 ~y~~~~~~l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl-------~~K~~----k~ 141 (225)
T cd07590 73 ALDSVTTQLDKTVQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVEKL-------AEKEK----TG 141 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HhCcc----CC
Confidence 99999999996668889999999999999887766664443 5556688888877633 22321 22
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024505 188 DLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAV---ESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGE 257 (266)
Q Consensus 188 e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aV---EaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~e 257 (266)
.+-.||..||..+..-+..-..+..+.-.=|-.. ...==.-+||-|+.| +-.||.-.-.++.+|..-
T Consensus 142 ~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~---Ql~f~~e~~k~~~~l~~~ 211 (225)
T cd07590 142 PNLAKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKS---QVLYYSQSTKIFTQLAPN 211 (225)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 3369999999999988877766665443322211 111112356666555 679999999999888754
No 29
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=96.00 E-value=1.1 Score=40.01 Aligned_cols=176 Identities=22% Similarity=0.239 Sum_probs=115.5
Q ss_pred hhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhh
Q 024505 59 AGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAE 138 (266)
Q Consensus 59 aaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~e 138 (266)
.+|.+|||+-.=.+.+-..-.-|+.|+.-|++= |+.+. +| ...+......++.=-.++...|.++|.+
T Consensus 27 ~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~l---Y~p~~---~~------~~~~~~v~e~~d~~~~~l~~~l~~~Vl~ 94 (211)
T cd07588 27 SANRLQKDLKNYLNSVRAMKQASKTLSETLKEL---YEPDW---PG------REHLASIFEQLDLLWNDLEEKLSDQVLG 94 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCcc---cc------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899998877777777777788888877543 33332 22 1233445666666667788889999999
Q ss_pred HHHHhhcCCCchhhh-----hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHH
Q 024505 139 PLRAMVLGAPLDDAR-----HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKE 213 (266)
Q Consensus 139 PLRaMv~GaPLEDAR-----hLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKE 213 (266)
||.....=-|--..| |=..=|||.|..++.. +.| +. .+..||..||.+++..+..-..|..+
T Consensus 95 Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~~kL-------~~K----~~--kde~KL~kae~el~~Ak~~Ye~lN~~ 161 (211)
T cd07588 95 PLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNLEAL-------KAK----KK--VDDQKLTKAEEELQQAKKVYEELNTE 161 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHH-------Hhc----cc--ccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999887655543332 2233499999988754 222 21 34789999999999888877776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024505 214 AAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEVS 259 (266)
Q Consensus 214 A~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~emv 259 (266)
=-.=|-..=.=..-.=---+-+++-++-.||.-+..+..+|.+-|.
T Consensus 162 L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~ 207 (211)
T cd07588 162 LHEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMD 207 (211)
T ss_pred HHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4333322221111111122346677899999999999999988774
No 30
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.43 E-value=1.5 Score=39.54 Aligned_cols=146 Identities=12% Similarity=0.180 Sum_probs=107.1
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 024505 103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRE 182 (266)
Q Consensus 103 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re 182 (266)
++....-+-..|+.+-..|+..|+.|..-+..-+..||-..+.+ +|-+++-+..+||+-..+-++-..-.++=..| |
T Consensus 59 dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~pL~~F~k~-Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~-k- 135 (215)
T cd07601 59 DDEILVSTLKQFSKVVDELSTMHSTLSSQLADTVLHPISQFMES-DLAEIMTLKELFKAASNDHDGVLSKYSRLSKK-R- 135 (215)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcC-C-
Confidence 34445557778999999999999999999999999999998876 56889999999999999998854444332111 1
Q ss_pred CCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q 024505 183 TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILD-QLEG 256 (266)
Q Consensus 183 ~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd-~l~~ 256 (266)
+ ++.. .+.|+.-|.--++.---.-=+=..++..|++-..===|+.|++.+.|=.+|.+.--++|. +++.
T Consensus 136 -~-~~~~---~~Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~p 205 (215)
T cd07601 136 -E-NTKV---KIEVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEE 205 (215)
T ss_pred -C-chHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111 235555555555555444455566777777777777789999999999999999999987 6654
No 31
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=95.42 E-value=2 Score=38.95 Aligned_cols=152 Identities=20% Similarity=0.320 Sum_probs=98.7
Q ss_pred hhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHH
Q 024505 86 TKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQE 165 (266)
Q Consensus 86 ~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQE 165 (266)
.-|++.--+||.+=+ .++.+..|-..||.|...+=..|..+--.+.+-+.+||+.-..+- -..|..-|.-
T Consensus 67 ~~Lg~~M~~~G~~lg--~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~d--------ik~i~k~RKk 136 (223)
T cd07614 67 GLLGETMIRYGKELG--DESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKD--------LKEIQHHLKK 136 (223)
T ss_pred hHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 346777788898854 455699999999999999999999999999999999999765332 1244555555
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505 166 AEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQ 245 (266)
Q Consensus 166 aE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHq 245 (266)
+|..-.+.--.+.| .+. .++ .-|+.|..|..+-+. .|...|-.|-.=. -=-+.=|...|+|.-.||+
T Consensus 137 Le~rRLdyD~~K~r--~~k-~~e--eelr~a~ekFees~E-------~a~~~M~~il~~e-~e~~~~L~~lveAQl~Yh~ 203 (223)
T cd07614 137 LEGRRLDFDYKKKR--QGK-IPD--EELRQAMEKFEESKE-------VAETSMHNLLETD-IEQVSQLSALVDAQLDYHR 203 (223)
T ss_pred HHHHHHHHHHHHHc--CCC-Cch--HHHHHHHHHHHHHHH-------HHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHH
Confidence 55544433322222 222 222 234445545544332 2233333221100 0014458899999999999
Q ss_pred HHHHHHHHhhhhhhh
Q 024505 246 RVLQILDQLEGEVSN 260 (266)
Q Consensus 246 rv~~ILd~l~~emvs 260 (266)
..++||..|..++..
T Consensus 204 qa~eiL~~l~~~l~~ 218 (223)
T cd07614 204 QAVQILDELAEKLKR 218 (223)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 32
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.46 E-value=3.7 Score=37.20 Aligned_cols=166 Identities=15% Similarity=0.153 Sum_probs=91.2
Q ss_pred hhhhhhhhhhhhhhcCCCC----CCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhc------------
Q 024505 82 VEIGTKLSEDSRKYGSDNT----CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL------------ 145 (266)
Q Consensus 82 ~Ei~~KLaeDc~kYG~en~----~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~------------ 145 (266)
-|.+.+|..-|.||..--. ..+..++-.|...+=+.-..+=.+++.+-.-|.++|++||...+.
T Consensus 36 keYakkL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~ 115 (253)
T cd07676 36 LSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHD 115 (253)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999965421 011224555655554444455589999999999999999987776
Q ss_pred ----CCCchhh----hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHH-HH
Q 024505 146 ----GAPLDDA----RHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEA-AA 216 (266)
Q Consensus 146 ----GaPLEDA----RhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA-~a 216 (266)
..|++.. .--...|++.++|+|.-..-..+ ++. +.+.++ .+++-+..++..-+..|. -.|+- ..
T Consensus 116 ~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~k--a~~-d~~~sk---~~~eK~k~~~~~~~~~~e-~aKn~Y~~ 188 (253)
T cd07676 116 GRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEK--MDA-DINVTK---ADVEKARQQAQIRHQMAE-DSKAEYSS 188 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccc-cccCCH---HHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 1222211 12456889999988875332222 110 111122 233445555555554444 34433 33
Q ss_pred HHHHHHHHH---------------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q 024505 217 AMAAVESQQ---------------QRLTLQRLIAM-------VEAERTYHQRVLQILDQL 254 (266)
Q Consensus 217 Am~aVEaQQ---------------QrlTlQRLiaM-------VeaEr~YHqrv~~ILd~l 254 (266)
.+.-....| |.+-=.|+.-| .+.|+.++..|...||.+
T Consensus 189 ~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e~~~~~~i~~cl~~i 248 (253)
T cd07676 189 YLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKTYAEVDRQVIPIIGKCLDGI 248 (253)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333 55555554433 345666555555555543
No 33
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=90.83 E-value=14 Score=34.40 Aligned_cols=88 Identities=23% Similarity=0.321 Sum_probs=61.0
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhh-------hhHHHHHHHHHHHHHHHHHHHHH
Q 024505 103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDA-------RHLAQRYDRMRQEAEAQAIEVSK 175 (266)
Q Consensus 103 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDA-------RhLaqrYdRmRQEaE~qa~eV~r 175 (266)
.|..|.| +..-+..+|.-+..|++.|-+...-||-.=+- ++. +.-+.-|.|+|+|.---..|..|
T Consensus 69 lG~~Ltr----i~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E----~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~k 140 (231)
T cd07643 69 IGSALTR----MCMRHKSIETKLKQFTSALMDCLVNPLQEKIE----EWKKVANQLDKDHAKEYKKARQEIKKKSSDTIR 140 (231)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3444555 44556669999999999999998887754321 122 33456799999999999999999
Q ss_pred HHhhhcCCCCChhhhhhHHHHHHHH
Q 024505 176 RQAKVRETPGNPDLALKLDAAEVKL 200 (266)
Q Consensus 176 Rq~k~re~~gn~e~~~KLq~AE~Kl 200 (266)
=|.|+|... ++.-..|..|.+-+
T Consensus 141 lqkk~rKg~--~~~~~~ldsa~~dv 163 (231)
T cd07643 141 LQKKARKGK--GDLQPQLDSAMQDV 163 (231)
T ss_pred HHHHHhccC--CccchHHHHHHHHH
Confidence 999999754 44444444444333
No 34
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=90.45 E-value=16 Score=34.41 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=95.0
Q ss_pred hhhhhhhhcCCCCCCcchHHHHHHHHhhHHH-HHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHH
Q 024505 88 LSEDSRKYGSDNTCTSGNTLSKAALSYGRAR-AQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEA 166 (266)
Q Consensus 88 LaeDc~kYG~en~~~~~~~LarAa~~yg~a~-~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEa 166 (266)
|++---+||.+=+ .++.|.+|- ..|-+. ++|=.+..++---+-..|.+||--... --|-+.-|...+-.++|.+.
T Consensus 62 Ls~~M~es~keLg--~dS~lg~aL-e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e-~dL~~I~k~rKkL~k~~LD~ 137 (257)
T cd07620 62 LSISMAESFKDFD--AESSIRRVL-EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSE-EDLPEILKNKKQFAKLTTDW 137 (257)
T ss_pred HHHHHHHHHhhCC--CcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hhHHHHHHHHHHHHhHHhhH
Confidence 4444467777754 234466666 677666 999999999999999999999988766 22334455555666666666
Q ss_pred HHHHHHHHHHHh-h-hcC--CCCCh----------hhhhh-------HHHHHHHHHHHHHHHHHhcHHHHHHHH---HHH
Q 024505 167 EAQAIEVSKRQA-K-VRE--TPGNP----------DLALK-------LDAAEVKLHDLKSNMAILGKEAAAAMA---AVE 222 (266)
Q Consensus 167 E~qa~eV~rRq~-k-~re--~~gn~----------e~~~K-------Lq~AE~Kl~Elks~Ma~LGKEA~aAm~---aVE 222 (266)
..- |+|. . .+. .+||. .+..| ++.|+.|+.+-|.. +++.|- +=|
T Consensus 138 D~~-----K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~-------~~a~Mynfl~kE 205 (257)
T cd07620 138 NSA-----KSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQ-------YSADLYHFATKE 205 (257)
T ss_pred HHH-----HHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh
Confidence 542 2222 1 111 12221 23466 44555555554432 333332 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024505 223 SQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEVS 259 (266)
Q Consensus 223 aQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~emv 259 (266)
..|- .=|+..||+-..||++.++||+.+..+|-
T Consensus 206 ~e~a----~~l~~lveaQ~~YHrqsl~~Le~~l~~~~ 238 (257)
T cd07620 206 DSYA----NYFIRLLELQAEYHKNSLEFLDKNITELK 238 (257)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 23788899999999999999999999874
No 35
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=90.22 E-value=17 Score=34.41 Aligned_cols=139 Identities=22% Similarity=0.351 Sum_probs=94.2
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHH--HHHHHHHHhhh
Q 024505 103 SGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQ--AIEVSKRQAKV 180 (266)
Q Consensus 103 ~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~q--a~eV~rRq~k~ 180 (266)
+.+.|++|-..|+.+...|..-|-.+-..+-+..-.||+.-++. .+. .=.++|+.++.- -.|+.|-..|.
T Consensus 146 ~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~-~~~-------~a~k~RkkV~~sRL~~D~~R~~~k~ 217 (289)
T PF10455_consen 146 DEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNT-DFK-------KANKARKKVENSRLQFDAARANLKN 217 (289)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34679999999999999999999999999999999999875532 233 334555555543 45666666665
Q ss_pred cCCCCChh-hhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024505 181 RETPGNPD-LALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEV 258 (266)
Q Consensus 181 re~~gn~e-~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~em 258 (266)
+..|-+.+ .-..|+.||- |+-+ -=.+|+.-|-.|=.-=- .+.-|-.+|.|-..||+..+++|..+-.++
T Consensus 218 ~~~pekee~~r~~lE~aED---eFv~----aTeeAv~~Mk~vl~~~e--~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l 287 (289)
T PF10455_consen 218 KAKPEKEEQLRVELEQAED---EFVS----ATEEAVEVMKEVLDNSE--PLRLLKELVKAQLEYHKKAAEALSELLKSL 287 (289)
T ss_pred cCCcccCHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHhcCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333322 2344555554 3333 33567777765543322 245577899999999999999999876543
No 36
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=89.03 E-value=17 Score=32.86 Aligned_cols=139 Identities=18% Similarity=0.261 Sum_probs=91.8
Q ss_pred HHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhH-------HHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 024505 110 AALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHL-------AQRYDRMRQEAEAQAIEVSKRQAKVRE 182 (266)
Q Consensus 110 Aa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhL-------aqrYdRmRQEaE~qa~eV~rRq~k~re 182 (266)
+-......+..+|..++.+.++|-..+..||.-=+- +|.+-+ ..-|.+.|++.+--..|..|=|.|++.
T Consensus 69 ~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e----~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~ 144 (223)
T cd07605 69 ALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLE----LDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQK 144 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333466677899999999999999999999764321 233333 346778888988888888887777775
Q ss_pred CCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505 183 TPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQ 253 (266)
Q Consensus 183 ~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~ 253 (266)
+ |.+....||..+-.-+.+...-|..+=+.+--...--|--.=..=+.++-..++.|-+||...-..|.+
T Consensus 145 ~-~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~ 214 (223)
T cd07605 145 S-GTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLST 214 (223)
T ss_pred c-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 566667778777665555555555444333322222222222233567778899999999887776654
No 37
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=88.01 E-value=17 Score=31.63 Aligned_cols=192 Identities=18% Similarity=0.293 Sum_probs=121.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhh
Q 024505 48 QRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGN 127 (266)
Q Consensus 48 Q~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~ 127 (266)
--||+|.. +|+.|++ ++.+.+.+|.--++-..|+++-|-. .++ +. .|.-+-..+...+..+|.++++
T Consensus 10 P~~e~lv~---~~~kY~~----al~~~~~a~~~f~dal~ki~~~A~~----s~~-s~-~lG~~L~~~s~~~r~i~~~~~~ 76 (219)
T PF08397_consen 10 PAWENLVS---LGKKYQK----ALRAMSQAAAAFFDALQKIGDMASN----SRG-SK-ELGDALMQISEVHRRIENELEE 76 (219)
T ss_dssp HHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT----SSS-HH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccC----CCc-cc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 34566553 4666664 4466777777777777888876653 111 22 3677777888899999999999
Q ss_pred HHHHHhhhhhhHHHHhhcCCCc---hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHH
Q 024505 128 LLKALGTQVAEPLRAMVLGAPL---DDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLK 204 (266)
Q Consensus 128 l~r~L~~QV~ePLRaMv~GaPL---EDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elk 204 (266)
+.+.|-+.+.-||..=+-.-+= ..=++...-|.+.+.+.+-...|..|=+.|.+. |.++....+..+-..+.+..
T Consensus 77 ~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~k--gk~~~~~~~~~~~~~v~~~~ 154 (219)
T PF08397_consen 77 VFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRK--GKDDQKYELKEALQDVTERQ 154 (219)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CCccccHHHHHHHHHHHHHH
Confidence 9999999999999865542211 111223455667777777777776665555553 33444444555544555555
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024505 205 SNMAILGKEAAAAMAAVESQQQRLT--LQRLIAMVEAERTYHQRVLQILDQLEG 256 (266)
Q Consensus 205 s~Ma~LGKEA~aAm~aVEaQQQrlT--lQRLiaMVeaEr~YHqrv~~ILd~l~~ 256 (266)
+-|...=+++- =.|.-...-|.. +.++-..|..|-+||-...++|...=.
T Consensus 155 ~ele~~~~~~~--r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~ 206 (219)
T PF08397_consen 155 SELEEFEKQSL--REALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLD 206 (219)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 55554433333 233344444554 688899999999999986666655433
No 38
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=87.60 E-value=22 Score=32.48 Aligned_cols=182 Identities=10% Similarity=0.154 Sum_probs=99.8
Q ss_pred hhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCC---CCcch-HHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhH
Q 024505 64 QRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNT---CTSGN-TLSKAALSYGRARAQMEKERGNLLKALGTQVAEP 139 (266)
Q Consensus 64 QrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~---~~~~~-~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~eP 139 (266)
=++||+-.-|.|.+|..=.--..+++.-.+-++-+-+ .|+++ .++.+-..||..-..||++|..|+.--...|..|
T Consensus 18 IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~~~ 97 (207)
T cd07633 18 IKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNASDLLIKP 97 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665555555666666665554421 12222 2788888999999999999999999999999999
Q ss_pred HHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHH
Q 024505 140 LRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMA 219 (266)
Q Consensus 140 LRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~ 219 (266)
|..-+-- -+.-++.-...||+.+.+-++--.--+- + ||-+. -.-++-|.+-|.--++..--.-=+=+--+.
T Consensus 98 L~~F~Ke-di~~~Ke~KK~FdK~se~~~~aL~k~a~--~----s~k~K--~~e~eEA~~~L~~~r~~F~~~aLdYV~qI~ 168 (207)
T cd07633 98 LENFRKE-QIGFTKERKKKFEKDSEKFYSLLDRHVN--L----SSKKK--ESQLQEADLQVDKERQNFYESSLEYVYQIQ 168 (207)
T ss_pred HHHHHHH-HHHHHHHHhhhhhhhhhHHHHHHHHHhc--c----cccCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9877641 1222455567788887777653221110 0 00011 112444444444444333322222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024505 220 AVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL 254 (266)
Q Consensus 220 aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l 254 (266)
.|.+..-==-+.-|++.+.+=-+|.+-=-+++.++
T Consensus 169 ~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df 203 (207)
T cd07633 169 EVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDF 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 33332222234455666666666555444554443
No 39
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=87.50 E-value=23 Score=32.51 Aligned_cols=180 Identities=16% Similarity=0.288 Sum_probs=122.9
Q ss_pred eeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhh
Q 024505 74 YIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR 153 (266)
Q Consensus 74 ~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR 153 (266)
+..+|.-+++--.-+++--++-|.--.|.++..++++-+.||.....|-+=.++|+--+..-|.-||-..+-| -|-+-+
T Consensus 28 ~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~-dLr~vK 106 (215)
T cd07642 28 IHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKG-DLKGVK 106 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHhH
Confidence 4566777777777777777777774223345568999999999999999999999888888899999999875 244445
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHH-HHHHHHHHHHHHHhcHHHHH---HHHHHHHHHHHH
Q 024505 154 -HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAA-EVKLHDLKSNMAILGKEAAA---AMAAVESQQQRL 228 (266)
Q Consensus 154 -hLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~A-E~Kl~Elks~Ma~LGKEA~a---Am~aVEaQQQrl 228 (266)
.+.+-||+.|.+-|+-.....+-+.|. +-+.-+.+.+.. |---++|..+=....-+|+- =+..+..-|-+=
T Consensus 107 ~d~KK~fdK~~~dyE~~~~k~ek~~r~~----~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~e 182 (215)
T cd07642 107 GDLKKPFDKAWKDYETKVTKIEKEKKEH----AKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVD 182 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc----CCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 567789999999998765333222111 011112222221 11123444444445555555 455566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024505 229 TLQRLIAMVEAERTYHQRVLQILDQLEGEV 258 (266)
Q Consensus 229 TlQRLiaMVeaEr~YHqrv~~ILd~l~~em 258 (266)
=||.|+....|--+|++.=+..|+.|+-=|
T Consensus 183 iL~~l~~~~~AQ~tfF~qG~k~le~l~p~~ 212 (215)
T cd07642 183 LLQNLIKYFHAQCNFFQDGLKAVETLKPSI 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999997644
No 40
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=83.33 E-value=26 Score=29.51 Aligned_cols=149 Identities=15% Similarity=0.220 Sum_probs=97.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 024505 105 NTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETP 184 (266)
Q Consensus 105 ~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~ 184 (266)
..|+++-..||.+...+-.=.+.+....-....+||+-.+.-.+ -++.+-.+=+++..+-+.-..++.+++.....-.
T Consensus 78 ~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~--svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~ 155 (236)
T PF09325_consen 78 KSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIE--SVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLK 155 (236)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45889999999888777666666666555667778876654322 3334333444555666777777777776654443
Q ss_pred CCh-hhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Q 024505 185 GNP-DLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQR-------LIAMVEAERTYHQRVLQILDQLE 255 (266)
Q Consensus 185 gn~-e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQR-------LiaMVeaEr~YHqrv~~ILd~l~ 255 (266)
+++ ...-|+..++..+.+++..+..+-++--..-..+-.-=.|.--.| |..+++..-.||+.++++...+.
T Consensus 156 ~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~ 234 (236)
T PF09325_consen 156 ASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFL 234 (236)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 332 235788888888888888887776665544444433333333333 56788999999999998887764
No 41
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=82.45 E-value=31 Score=29.69 Aligned_cols=139 Identities=17% Similarity=0.129 Sum_probs=85.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCC---cchHHHHHHHHhhHHHHHHHH
Q 024505 47 HQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCT---SGNTLSKAALSYGRARAQMEK 123 (266)
Q Consensus 47 HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~---~~~~LarAa~~yg~a~~~mEk 123 (266)
|-.+.+...|.++--..|.+++...++++.... -+.+++.. ...++. ....|..+...|..
T Consensus 22 ~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~---------------~~~~~~~~~~~~~~~~~-~~~~y~~~~~~l~~ 85 (216)
T cd07599 22 IEQSKAFRDSWRSILTHQIAFAKEFAELYDPIV---------------GPKESVGSHPAPESTLA-RLSRYVKALEELKK 85 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC---------------CCCcCcCCCCCcHHHHH-HHHHHHHHHHHHHH
Confidence 334444555556666777777777777654211 11111110 122233 34557888888877
Q ss_pred HHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHH-------HHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHH
Q 024505 124 ERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQR-------YDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAA 196 (266)
Q Consensus 124 Ere~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqr-------YdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~A 196 (266)
+=...+..+.+.|..|+..+..= +.+.+.+-.+ |||+|...+. ..+.| ++.++..-.||..|
T Consensus 86 ~~~~~l~~i~~~V~~P~~~~~~~--~~~i~k~IkKR~~k~lDyd~~~~k~~k------~~~~k---~~~~~kd~~kl~ka 154 (216)
T cd07599 86 ELLEELEFFEERVILPAKELKKY--IKKIRKTIKKRDHKKLDYDKLQNKLNK------LLQKK---KELSLKDEKQLAKL 154 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHH------HHhcC---CCCChhHHHHHHHH
Confidence 77777889999999999998863 3344443333 7777776655 12333 12356668899999
Q ss_pred HHHHHHHHHHHHHhcH
Q 024505 197 EVKLHDLKSNMAILGK 212 (266)
Q Consensus 197 E~Kl~Elks~Ma~LGK 212 (266)
|.+|.+.+..-..|..
T Consensus 155 e~~l~~a~~~y~~lN~ 170 (216)
T cd07599 155 ERKLEEAKEEYEALNE 170 (216)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888777666544
No 42
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=76.86 E-value=59 Score=29.57 Aligned_cols=192 Identities=13% Similarity=0.145 Sum_probs=114.5
Q ss_pred CCCccccchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHH
Q 024505 33 GSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAAL 112 (266)
Q Consensus 33 ~~d~~v~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~ 112 (266)
..|.++.| +-.+.+.||+ +++.+|+|.=+=.+.+-..-.-|+.|+.-|++ =|+.+.. | ..
T Consensus 9 T~D~~Fe~--~e~rf~~le~------~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e---~Y~~~~~---~------~~ 68 (211)
T cd07612 9 TKDEQFEQ--CAMNLNMQQS------DGNRLYKDLKAYLNAVKVMHESSKRLSQTLQD---IYEPDWD---G------HE 68 (211)
T ss_pred cCchhHHH--HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCcC---c------cc
Confidence 34444422 2345555553 56778888754444433344556666666666 3555432 1 11
Q ss_pred HhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhh-----hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCh
Q 024505 113 SYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-----HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNP 187 (266)
Q Consensus 113 ~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR-----hLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~ 187 (266)
.+......++.=.+++...+.++|.+||-..+.=-|=-..+ |=..=|||.|..++..- +.+ .
T Consensus 69 ~~~~v~e~~d~~~~~~~~~~~~~vL~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~~kl~-----------~k~-~- 135 (211)
T cd07612 69 DLGAIVEGEDLLWNDYEAKLHDQALRTMESYMAQFPDVKERVAKRGRKLVDYDSARHHLEALQ-----------NAK-K- 135 (211)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------hcc-c-
Confidence 22333344555677888899999999999876655543333 22344999998876432 222 1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024505 188 DLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTL--QRLIAMVEAERTYHQRVLQILDQLEGEVS 259 (266)
Q Consensus 188 e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTl--QRLiaMVeaEr~YHqrv~~ILd~l~~emv 259 (266)
....||..||..|+.-+..-..|..+=--=|-..= +-|+.+ --+=++|-.+-.||.-+..|...|..-|.
T Consensus 136 kD~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~--~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~ 207 (211)
T cd07612 136 KDDAKIAKAEEEFNRAQVVFEDINRELREELPILY--DSRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMK 207 (211)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33789999999999888777666544322221110 112221 12236677899999999999988887663
No 43
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=76.81 E-value=8.2 Score=36.37 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=28.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 024505 150 DDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRET 183 (266)
Q Consensus 150 EDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~ 183 (266)
.+---+.|||.|||.|++-...||.+++...+++
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~ 120 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKES 120 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3445678999999999999999999998766554
No 44
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=75.45 E-value=69 Score=29.67 Aligned_cols=149 Identities=18% Similarity=0.202 Sum_probs=81.1
Q ss_pred hhhhhhhhhhhhhhcCCCCCCcch-HH-HHHHHHhhHHHHHH---HHHHhhHHHHHhhhhhhHHHHhhcCCCchhhh--h
Q 024505 82 VEIGTKLSEDSRKYGSDNTCTSGN-TL-SKAALSYGRARAQM---EKERGNLLKALGTQVAEPLRAMVLGAPLDDAR--H 154 (266)
Q Consensus 82 ~Ei~~KLaeDc~kYG~en~~~~~~-~L-arAa~~yg~a~~~m---EkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR--h 154 (266)
-|.+.||..=|+||+.--...... .+ +.+| |.+-...+ =.+||.+-.-|.+||+.||-.++ .+|+..| |
T Consensus 36 ~eYakkL~~L~Kky~~KK~~~~e~p~~t~~~s--~~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~--~~l~~~rk~~ 111 (252)
T cd07675 36 QNYAKQLRNLVKKYCPKRSSKDEEPRFTSCLS--FYNILNELNDYAGQREVVAEEMGHRVYGELMRYS--HDLKGERKMH 111 (252)
T ss_pred HHHHHHHHHHHHHhccccCCCCCCccccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHH
Confidence 467889999999997643211110 11 2222 55544544 47899999999999999998877 4444433 2
Q ss_pred ------H--------------HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhh--HHHHHHHHHHHHHHHHHhcH
Q 024505 155 ------L--------------AQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALK--LDAAEVKLHDLKSNMAILGK 212 (266)
Q Consensus 155 ------L--------------aqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~K--Lq~AE~Kl~Elks~Ma~LGK 212 (266)
| ..+|++.++|+|.--. +.-..+.++ +.+| ++-+..++..=...|. -.|
T Consensus 112 ~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~-------k~~ka~~d~-~~tk~~~eK~k~~~~~~~q~~e-~aK 182 (252)
T cd07675 112 LQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQ-------SYERLDNDT-NATKSDVEKAKQQLNLRTHMAD-ESK 182 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcccCc-ccCHHHHHHHHHHHHHHHHHHH-HHH
Confidence 1 2467777777775422 211122111 1222 3344444444333333 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024505 213 EAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEG 256 (266)
Q Consensus 213 EA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~ 256 (266)
.-=+....+-.. .-.+-||+-+-+|||.|.+
T Consensus 183 n~Y~~~L~~~N~-------------~q~k~Y~e~mP~vfd~lQ~ 213 (252)
T cd07675 183 NEYAAQLQNFNG-------------EQHKHFYIVIPQIYKQLQE 213 (252)
T ss_pred HHHHHHHHHHHH-------------hhHhHHHHHHHHHHHHHHH
Confidence 222222222111 2345688888888888875
No 45
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=70.75 E-value=89 Score=28.87 Aligned_cols=157 Identities=21% Similarity=0.343 Sum_probs=104.2
Q ss_pred hhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHH
Q 024505 83 EIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRM 162 (266)
Q Consensus 83 Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRm 162 (266)
.-+..|+.-|.-|+++-. .+ |..+-..|+..-.-++.=|.....-|-+-|.+||+.-- .---.+| +-|
T Consensus 46 Dk~D~lak~l~~yA~~E~---~~-l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~--~~cK~~r------~el 113 (219)
T PF06730_consen 46 DKGDELAKQLQDYANTEN---PN-LKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYG--TICKHAR------DEL 113 (219)
T ss_pred hhhHHHHHHHHHHHhcCC---cc-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHH------HHH
Confidence 345678888888987643 22 55577889999999999999999999999999998642 2222222 223
Q ss_pred HHHHHHHHHHHHHHHh--hhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH-HHHHHH-HHHH
Q 024505 163 RQEAEAQAIEVSKRQA--KVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRL-TLQRLI-AMVE 238 (266)
Q Consensus 163 RQEaE~qa~eV~rRq~--k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrl-TlQRLi-aMVe 238 (266)
..---++--|+.+.+. |.| ..||-+-..+-.||+.|+..+-..+--.+.----|...|. |+| .+..++ ..|-
T Consensus 114 K~~~~ar~kEikq~~~Leklr--~k~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEk--qKl~DlK~i~sdFv~ 189 (219)
T PF06730_consen 114 KKFNKARNKEIKQLKQLEKLR--QKNPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEK--QKLKDLKKIFSDFVT 189 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--ccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3333344445555543 444 2355555567788988887665555555555555555544 343 567766 7899
Q ss_pred HHHHHHHHHHHHHHHhh
Q 024505 239 AERTYHQRVLQILDQLE 255 (266)
Q Consensus 239 aEr~YHqrv~~ILd~l~ 255 (266)
-|-.||-..+++|..-+
T Consensus 190 iEM~fHaKALEv~T~a~ 206 (219)
T PF06730_consen 190 IEMVFHAKALEVYTAAY 206 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987544
No 46
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=70.15 E-value=73 Score=27.63 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=42.4
Q ss_pred hhhhhhhhhhhhhhcCCCC-C-CcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhc
Q 024505 82 VEIGTKLSEDSRKYGSDNT-C-TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL 145 (266)
Q Consensus 82 ~Ei~~KLaeDc~kYG~en~-~-~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~ 145 (266)
-|.+.+|..=|++|..-.. + ..+.++..|-..+=+.-..+-+-+.++-..|.++|.+||..++-
T Consensus 36 ~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~ 101 (251)
T cd07653 36 QEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLIS 101 (251)
T ss_pred HHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777764321 1 11235666655555555566677888888888999999988864
No 47
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=68.26 E-value=89 Score=27.89 Aligned_cols=175 Identities=18% Similarity=0.209 Sum_probs=102.6
Q ss_pred hhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHH-Hhhhh
Q 024505 58 RAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKA-LGTQV 136 (266)
Q Consensus 58 RaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~-L~~QV 136 (266)
.+++-+|+++-.=.+.+.+..+-|+.|+.-|++ =|+...+. . ...++..|+.+-..+..+-..-+.. +...|
T Consensus 25 ~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~---lY~p~~~~-~---~~~~~~~y~~~v~~l~~~~~~el~~~~~~~V 97 (224)
T cd07591 25 KASTKLQKEAKGYLDSLRALTSSQARIAETISS---FYGDAGDK-D---GAMLSQEYKQAVEELDAETVKELDGPYRQTV 97 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCCc-c---HhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 356788888887777777777777666665554 36555421 1 2456778888888776555444444 88899
Q ss_pred hhHHHHhhcCCCchhhhhHH-------HHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHH
Q 024505 137 AEPLRAMVLGAPLDDARHLA-------QRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAI 209 (266)
Q Consensus 137 ~ePLRaMv~GaPLEDARhLa-------qrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~ 209 (266)
.+|+-.+..=-| +.+.+. -=|||.|...+.. +.|.. . + ..||..||.+|.+-+..-..
T Consensus 98 ~~Pl~~~~~~~~--~i~k~IkKR~~KllDYD~~~~k~~kl-------~~K~~----k-d-~~kL~kae~el~~a~~~Ye~ 162 (224)
T cd07591 98 LDPIGRFNSYFP--EINEAIKKRNHKLLDYDAARAKVRKL-------IDKPS----E-D-PTKLPRAEKELDEAKEVYET 162 (224)
T ss_pred HHHHHHHHHHhh--hHHHHHHHHHhhHhhHHHHHHHHHHH-------Hhccc----C-C-HHHHHHHHHHHHHHHHHHHH
Confidence 999988874433 333332 2388888877743 22321 1 1 28999999999887776665
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024505 210 LGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL 254 (266)
Q Consensus 210 LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l 254 (266)
|...=-.=|-..=+-..-+--.=+-++|-.+-+||-.+...|..+
T Consensus 163 lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~ 207 (224)
T cd07591 163 LNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQV 207 (224)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544322222221111111111223345555666666665555544
No 48
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=58.09 E-value=1.6e+02 Score=27.27 Aligned_cols=183 Identities=12% Similarity=0.157 Sum_probs=115.1
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhc---CCCCCCcchHHHHHHHHhhHHHHH
Q 024505 44 LHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYG---SDNTCTSGNTLSKAALSYGRARAQ 120 (266)
Q Consensus 44 lq~HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG---~en~~~~~~~LarAa~~yg~a~~~ 120 (266)
-|.||-++++|-.|+- . |.- -.++|.--..|- -+- ...+..++.+-..|+.+-..
T Consensus 19 ~~~~~~~~~~~~a~~~-------l----------s~a----~~~~~~~l~~~~~~~f~~-~~dDe~i~~~L~kFs~~L~E 76 (215)
T cd07631 19 NQLFQAMHRIYDAQNE-------L----------SAA----THLTSKLLKEYEKQRFPL-GGDDEVMSSTLQQFSKVIDE 76 (215)
T ss_pred HHHHHHHHHHHHHHHH-------H----------HHH----HHHHHHHHHHHHHhcCCc-CCCcHHHHHHHHHHHHHHHH
Confidence 4779999999988761 1 110 123444333343 221 12345588888899999999
Q ss_pred HHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHH
Q 024505 121 MEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKL 200 (266)
Q Consensus 121 mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl 200 (266)
|+.+|..|..-...-+..||-.-+- -+|..++....+||+...+-+.--.-.++=..+.++.-.-.|.+.=+..+..+-
T Consensus 77 l~~~~~~L~~q~~~sl~~pL~~F~k-edL~~~Ke~KK~FdK~Se~~d~Al~K~a~lsk~K~~E~~~eea~~~v~~tR~~F 155 (215)
T cd07631 77 LSSCHAVLSTQLADAMMFPITQFKE-RDLKEILTLKEVFQIASNDHDAAINRYSRLSKRRENEKVKYEVTEDVYTSRKKQ 155 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 9999999998888889999988554 577889999999999999988765544432212111000001111122211111
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh
Q 024505 201 HDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQ-ILDQLEG 256 (266)
Q Consensus 201 ~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~-ILd~l~~ 256 (266)
..++| +=+.++..+++-..=-=|+.|++.++|=.+|...--+ ++.+++.
T Consensus 156 --~~~aL-----dYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~ 205 (215)
T cd07631 156 --HQTMM-----HYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEE 205 (215)
T ss_pred --HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 12233 2344566666666666678899999999999888888 4445543
No 49
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=57.18 E-value=1.6e+02 Score=27.07 Aligned_cols=80 Identities=19% Similarity=0.208 Sum_probs=46.7
Q ss_pred hhhhhhhhhhhhhcCCCCC--CcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHH
Q 024505 83 EIGTKLSEDSRKYGSDNTC--TSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYD 160 (266)
Q Consensus 83 Ei~~KLaeDc~kYG~en~~--~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYd 160 (266)
|.+.+|..=|.+|.-.... ...+.+.++-..+=+--..+=+.|+.+-.-|.++|+..|-.++. |=+.+...|+
T Consensus 37 EYA~~L~~L~kq~~kk~~~~~~~~s~v~~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~-----~~~~~~k~~~ 111 (234)
T cd07686 37 EYASTLQNLCNQVDKESTSQLDYVSNVSKSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIK-----DKQQVKKSYI 111 (234)
T ss_pred HHHHHHHHHHHHhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHH
Confidence 5667777778887432111 11223444444444444555588999999999999999977753 3344444444
Q ss_pred HHHHHHH
Q 024505 161 RMRQEAE 167 (266)
Q Consensus 161 RmRQEaE 167 (266)
-..+..+
T Consensus 112 ~~~~kl~ 118 (234)
T cd07686 112 GVHQQIE 118 (234)
T ss_pred HHHHHHH
Confidence 4444433
No 50
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=55.16 E-value=1.1e+02 Score=24.83 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=50.8
Q ss_pred hhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcC
Q 024505 82 VEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLG 146 (266)
Q Consensus 82 ~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~G 146 (266)
-|-+.+|..=|++|..-+..+. .++..+-..+-..-..+-+-+..+-..|.+.|.+|++....-
T Consensus 31 ~eYak~L~kLak~~~~~~~~~~-~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~~ 94 (191)
T cd07610 31 EEYAKNLQKLAKKFSKKPESGK-TSLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKED 94 (191)
T ss_pred HHHHHHHHHHHHHhhcccCCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888876543222 468888888888888888999999999999999999988764
No 51
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.29 E-value=1.8e+02 Score=25.23 Aligned_cols=131 Identities=18% Similarity=0.228 Sum_probs=80.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 024505 106 TLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPG 185 (266)
Q Consensus 106 ~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~g 185 (266)
.|+.|-..+|.+-.....--.++...+...+++|||-++.=+ .=-|.+-.+=+..+.+-|....++.+++..
T Consensus 67 ~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~--~svk~~l~~R~~~q~~~e~~~e~L~~k~~~------ 138 (200)
T cd07624 67 ELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYS--DAVKDVLKRRDQFQIEYELSVEELNKKRLE------ 138 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 389999999999999999999999999999999999887411 111233333345666777777777777655
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024505 186 NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQL 254 (266)
Q Consensus 186 n~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l 254 (266)
--.+++.|+.++......|. + =+.--+.+-++===.=|+.+++.--.|.+.++.+-+.+
T Consensus 139 ---l~~ev~~a~~~~e~~~~~~~---~----E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~ 197 (200)
T cd07624 139 ---LLKEVEKLQDKLECANADLK---A----DLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAWEEV 197 (200)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12234445555554444331 0 01111111111111225677888888888877765544
No 52
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=48.26 E-value=1.5e+02 Score=24.13 Aligned_cols=81 Identities=22% Similarity=0.264 Sum_probs=63.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 024505 151 DARHLAQRYDRMRQEAEAQAIEVSKRQAK-VRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLT 229 (266)
Q Consensus 151 DARhLaqrYdRmRQEaE~qa~eV~rRq~k-~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlT 229 (266)
+......+-..++++.+.|+.-+..-+.+ -+|---.++.+..|......+.++++.+..|=.++-+|-..++.-+.-..
T Consensus 18 ~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~ 97 (132)
T PF07926_consen 18 QEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWE 97 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44455667788999999998888877776 44555577888999999999999999999999999999888876655444
Q ss_pred HH
Q 024505 230 LQ 231 (266)
Q Consensus 230 lQ 231 (266)
-+
T Consensus 98 ~q 99 (132)
T PF07926_consen 98 EQ 99 (132)
T ss_pred HH
Confidence 33
No 53
>PRK05849 hypothetical protein; Provisional
Probab=47.64 E-value=31 Score=36.59 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=40.6
Q ss_pred hhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHH-------HHHHhhHHHHHh---hhhhhHHHHh
Q 024505 82 VEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQM-------EKERGNLLKALG---TQVAEPLRAM 143 (266)
Q Consensus 82 ~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~m-------EkEre~l~r~L~---~QV~ePLRaM 143 (266)
++=...|-|||++||+=.- ..+|||+..==.-.+.+ ++|++++++.|. ++++.-+..+
T Consensus 434 l~~i~~lle~~~~~Gtl~F----a~~AR~~Fva~~~l~sl~~~g~~s~~~~~~f~~s~~Tv~~~~~~D~~~l 501 (783)
T PRK05849 434 LDKIYWLLEDCKRYGTLPF----AGIARAAFVATQLLKSLVEIGALSQEELDAFLNSLNTVSKELSKDLNSL 501 (783)
T ss_pred HHHHHHHHHHHHHhCCchh----HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence 5667889999999998742 24999987644433333 578899887664 4666666665
No 54
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=44.34 E-value=84 Score=25.66 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=49.0
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024505 186 NPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRVLQILDQLEGEV 258 (266)
Q Consensus 186 n~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv~~ILd~l~~em 258 (266)
..+...++...+.++.+|...+.-|......+.+-.+.-++|+.-.+--....+...+-..++.|+|.|+.=.
T Consensus 6 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~ 78 (165)
T PF01025_consen 6 EEEEDEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERAL 78 (165)
T ss_dssp CTCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666667777777777777666555556677777778888888886543
No 55
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.40 E-value=71 Score=27.68 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=31.8
Q ss_pred hhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhc
Q 024505 91 DSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL 145 (266)
Q Consensus 91 Dc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~ 145 (266)
-|..++...++ +.|+-+-..+|.+-...=.-=++|..-+...+.|||+.||.
T Consensus 48 ~fn~ls~~E~~---~~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~ 99 (187)
T cd07629 48 RFNAFSLEEQK---SELAEALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQ 99 (187)
T ss_pred HHHHHhhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34445555442 23444444555444444444456888889999999999874
No 56
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.17 E-value=37 Score=28.89 Aligned_cols=56 Identities=34% Similarity=0.404 Sum_probs=36.4
Q ss_pred CCCchhhhhH-------HHHHHHHHHHHHHHHHHHHHHHhhhcC-------CCCChhhhhhHHHHHHHHH
Q 024505 146 GAPLDDARHL-------AQRYDRMRQEAEAQAIEVSKRQAKVRE-------TPGNPDLALKLDAAEVKLH 201 (266)
Q Consensus 146 GaPLEDARhL-------aqrYdRmRQEaE~qa~eV~rRq~k~re-------~~gn~e~~~KLq~AE~Kl~ 201 (266)
.+|+||=..| ++||--|||=||.-+...+---.|.-. -....|.+-||++|-+||.
T Consensus 47 e~~iEdYKLLEeMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst~kLEaAa~~Ld 116 (120)
T KOG4559|consen 47 EAPIEDYKLLEEMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDSTDKLEAAAAKLD 116 (120)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4789998776 699999999999876544433222211 0113456677777777764
No 57
>PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=40.61 E-value=40 Score=34.66 Aligned_cols=61 Identities=38% Similarity=0.425 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcHHH-----HHHHHHHHHHHHHHHHHHHH---HHH------HHHHHHHHHHHHHHHHhhhhhhh
Q 024505 199 KLHDLKSNMAILGKEA-----AAAMAAVESQQQRLTLQRLI---AMV------EAERTYHQRVLQILDQLEGEVSN 260 (266)
Q Consensus 199 Kl~Elks~Ma~LGKEA-----~aAm~aVEaQQQrlTlQRLi---aMV------eaEr~YHqrv~~ILd~l~~emvs 260 (266)
-..-|=+.++-||||| +|.++||||+|.=..-..|| .|. -.+.+-|.-|-..| .||.+|+.
T Consensus 317 sw~sLP~sL~kLGKEa~~~Rd~A~~aA~eALqEASAaE~lir~Ls~fseL~ssak~~~P~~~v~~Fl-~lh~~l~~ 391 (579)
T PF06075_consen 317 SWDSLPSSLAKLGKEAMQQRDAAQKAAVEALQEASAAESLIRCLSMFSELCSSAKEDNPQPTVEQFL-SLHQDLVQ 391 (579)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcHHHHHHHH-HHHHHHHH
Confidence 3456778999999999 58999999999877655554 452 22333555555444 35665544
No 58
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.77 E-value=4.4e+02 Score=27.09 Aligned_cols=158 Identities=24% Similarity=0.278 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCccccchHHHhHHHHHHHHHhhhhhhhhhhhhhh---hhccceeeeccchhhhh
Q 024505 9 TKLREQVARQQQAVFKQFGGGGYGGSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIV---RGVEGYIVTGSKQVEIG 85 (266)
Q Consensus 9 sklreqVAkQQQAV~Kqfg~~gy~~~d~~v~DE~Elq~HQ~LekLY~STRaaKhFQrdIV---RgvEG~is~gsKq~Ei~ 85 (266)
.-+...+.+-++-|+-.||-+ |-.+ ||.= . |...++...-..|+..|+|.= .+|-|+ ++-.
T Consensus 4 k~~kKa~sRa~ekvlqk~g~~-----~~Tk-D~~F-E--~~~~~f~~~e~e~~kLqkd~k~y~~av~am-------~~a~ 67 (460)
T KOG3771|consen 4 KGVQKALNRAPEKVLQKLGKV-----DETK-DEQF-E--QEERNFNKQEAEGKRLQKDLKNYLDAVRAM-------LAAS 67 (460)
T ss_pred hhhHHHhccccHHHHhhcCCc-----cccc-chHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 345666888899999999832 2222 3322 1 113344444566777887752 223333 4667
Q ss_pred hhhhhhhhh-hcCCCCCCcchHHHHHHHHhhH-HHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHH-----HH
Q 024505 86 TKLSEDSRK-YGSDNTCTSGNTLSKAALSYGR-ARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLA-----QR 158 (266)
Q Consensus 86 ~KLaeDc~k-YG~en~~~~~~~LarAa~~yg~-a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLa-----qr 158 (266)
.+|+++|+- |..+.+ |. +|.. .-..++.=-.+|+..|.++|..||-..+.=-|=-+.+-+. +-
T Consensus 68 ~~l~e~l~eiy~p~~~---g~-------~~l~~v~~~~d~l~~d~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~D 137 (460)
T KOG3771|consen 68 KKLAESLQEIYEPDWP---GR-------DYLQAVADNDDLLWKDLDQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLVD 137 (460)
T ss_pred HHHHHHHHHhcCcccc---cH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhhh
Confidence 889999875 666543 22 2221 1234445556788899999999999888777766655433 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHH
Q 024505 159 YDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKS 205 (266)
Q Consensus 159 YdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks 205 (266)
||++|.--+.. |.+.+. ...|+..||..|..-+.
T Consensus 138 yD~~r~~~~kv-------q~~k~k------d~~k~~KAeeEl~~Aq~ 171 (460)
T KOG3771|consen 138 YDSARHSFEKL-------QAKKKK------DEAKLAKAEEELEKAQQ 171 (460)
T ss_pred hHHHHHHHHHH-------HHhcCC------ChhhhHHHHHHHHHHHH
Confidence 99999665532 223221 24566667776654443
No 59
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=39.38 E-value=4e+02 Score=26.59 Aligned_cols=219 Identities=17% Similarity=0.297 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccccchH--HHh-----HHHHHHHHHhhhhh---------hhhhhhhhhhhcccee
Q 024505 12 REQVARQQQAVFKQFGGGGYGGSDNVVTDEA--ELH-----QHQRLERLYISTRA---------GKHFQRDIVRGVEGYI 75 (266)
Q Consensus 12 reqVAkQQQAV~Kqfg~~gy~~~d~~v~DE~--Elq-----~HQ~LekLY~STRa---------aKhFQrdIVRgvEG~i 75 (266)
+.|..|-+|-+=..|||. ...=+|.. ||. +.--+-+|+.+|-- ||----+++.-|-|-+
T Consensus 2 ~kqF~ka~Q~~sEK~gga-----e~TkLdDdF~eme~~vdvt~~~v~~i~~~tteylqpnpa~rakl~~~n~lsKvrG~~ 76 (366)
T KOG1118|consen 2 KKQFNKASQWTSEKVGGA-----EGTKLDDDFLEMEKEVDVTSKGVTKILAKTTEYLQPNPASRAKLAMLNTLSKVRGQV 76 (366)
T ss_pred chHHHHHHHHhccccccc-----cCCcCChHHHHHHHhHHHHHHHHHHHHHhhHHhcCCChhhhhHHHHHHHHHHhcccc
Confidence 446666777888888742 22222322 222 23345566665521 2222236677777777
Q ss_pred eeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhH
Q 024505 76 VTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHL 155 (266)
Q Consensus 76 s~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhL 155 (266)
-+--++.+.| -|++---|||-|=+.. +.+..+-..||.+...|-.=.+.|---+---..+||.-. -+-|++.+
T Consensus 77 k~~~ypq~e~-~Lg~~mik~gkeLg~d--Ss~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l----~~~elK~i 149 (366)
T KOG1118|consen 77 KEKGYPQTEG-LLGDVMIKHGKELGDD--SSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNL----QLKELKDI 149 (366)
T ss_pred cCCCCccchh-HHHHHHHHHHHhcCCC--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh----hHHHHHHH
Confidence 6655554432 4666667888876532 235667778899999888888888777777778888643 23444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 024505 156 AQRYDRMRQEAEAQAIEVSK-RQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTLQRLI 234 (266)
Q Consensus 156 aqrYdRmRQEaE~qa~eV~r-Rq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTlQRLi 234 (266)
-+.-.+| |-..+..|-.+ |+-|.+ | --|..|..|..|-|.- -+.---++..+|.-| ++-|.
T Consensus 150 ~hh~KKL--EgRRldyD~kkkk~~K~~------d--EelrqA~eKfEESkE~----aE~sM~nlle~d~eq----vsqL~ 211 (366)
T KOG1118|consen 150 QHHRKKL--EGRRLDYDYKKKKQGKIK------D--EELRQALEKFEESKEL----AEDSMFNLLENDVEQ----VSQLS 211 (366)
T ss_pred HHHHHHh--hhhhhHHHHHHHHhccCC------h--HHHHHHHHHHHHHHHH----HHHHHHHHHhcCHHH----HHHHH
Confidence 4433333 12223333332 222322 2 2477888888876531 011112223334333 34578
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024505 235 AMVEAERTYHQRVLQILDQLEGEVSN 260 (266)
Q Consensus 235 aMVeaEr~YHqrv~~ILd~l~~emvs 260 (266)
++|+++-.||+.-++||+.|..-.-+
T Consensus 212 ~Li~aqLdfhrqs~~iL~~l~~~l~~ 237 (366)
T KOG1118|consen 212 ALIQAQLDFHRQSTQILQELQMKLFS 237 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999865433
No 60
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=38.88 E-value=2.9e+02 Score=24.70 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=33.7
Q ss_pred hhhhhhhhhhhhhhcCCC--C-CCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhh
Q 024505 82 VEIGTKLSEDSRKYGSDN--T-CTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMV 144 (266)
Q Consensus 82 ~Ei~~KLaeDc~kYG~en--~-~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv 144 (266)
.|-+.+|..=|++|..-- | ...| ++..|-..+=.....|=+.+..|-..|. +|.+||-.++
T Consensus 36 eeYak~L~KLak~~~~~~~~~~~~~g-s~~~a~~~il~~~e~lA~~h~~~a~~L~-~~~~eL~~l~ 99 (234)
T cd07652 36 EEHARGLKKLARTTLDTYKRPDHKQG-SFSNAYHSSLEFHEKLADNGLRFAKALN-EMSDELSSLA 99 (234)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 466778888888887521 1 1233 4665544444444444455555555553 5666665443
No 61
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.43 E-value=1e+02 Score=28.94 Aligned_cols=39 Identities=33% Similarity=0.424 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHhcCCCCCCCCccccchHHHhH
Q 024505 2 EAIRKQATKLREQVARQQ--QAVFKQFGGGGYGGSDNVVTDEAELHQ 46 (266)
Q Consensus 2 da~rKqAsklreqVAkQQ--QAV~Kqfg~~gy~~~d~~v~DE~Elq~ 46 (266)
|+|||||-+|--|..-+= -.+|+.=++||| .+|+..+..
T Consensus 8 e~LRkqArslE~~ld~kL~syskl~as~~gg~------~~~~s~~~~ 48 (231)
T KOG3208|consen 8 EALRKQARSLENQLDSKLVSYSKLGASTHGGY------DIDTSPLSG 48 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CCCcccccC
Confidence 799999999988876541 244444455555 345555443
No 62
>PRK13858 type IV secretion system T-DNA border endonuclease VirD1; Provisional
Probab=35.01 E-value=69 Score=28.04 Aligned_cols=89 Identities=17% Similarity=0.097 Sum_probs=61.2
Q ss_pred cchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHHHhh-HH
Q 024505 39 TDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAALSYG-RA 117 (266)
Q Consensus 39 ~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~~yg-~a 117 (266)
++|+|...-..-=+.+--| --.|=|..++.+-|+|.+.-...|-..++..+|.+-|+ |=|-|+|.+-.+| .-
T Consensus 31 LTe~Ey~~L~~rA~~aGlS--~SEfIRqAi~~~~g~V~v~r~T~e~~~~lir~l~gian-----NLNQLAr~aN~~~~~~ 103 (147)
T PRK13858 31 LRSAEYESFSAQARLLGLS--DSMAIRVAVRRIGGFLEIDAETREKMEAILQSIGTLSS-----NIAALLSAYAENPRPD 103 (147)
T ss_pred cCHHHHHHHHHHHHHcCCC--HHHHHHHHHHhcCCeEeecccCHHHHHHHHHHHHHHHH-----HHHHHHHHHhcCCCCc
Confidence 6777755443333333322 23688888876669996565666666677777776653 3467999999999 78
Q ss_pred HHHHHHHHhhHHHHHhh
Q 024505 118 RAQMEKERGNLLKALGT 134 (266)
Q Consensus 118 ~~~mEkEre~l~r~L~~ 134 (266)
...|+.||--|=+.|+.
T Consensus 104 ~~~l~~er~~~g~~~~~ 120 (147)
T PRK13858 104 LEALRAERIAFGKEFAD 120 (147)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999887776654
No 63
>PF11697 DUF3293: Protein of unknown function (DUF3293); InterPro: IPR021710 This bacterial family of proteins has no known function.
Probab=31.37 E-value=21 Score=26.86 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=15.7
Q ss_pred hhcCCCchhhhhHHHHHH
Q 024505 143 MVLGAPLDDARHLAQRYD 160 (266)
Q Consensus 143 Mv~GaPLEDARhLaqrYd 160 (266)
+|.|.|+++|+.|.++|.
T Consensus 52 ~V~~i~~~~A~~Lg~~f~ 69 (73)
T PF11697_consen 52 AVLGISLEEAIALGRKFG 69 (73)
T ss_pred EEcCCCHHHHHHHHHHhC
Confidence 577999999999999985
No 64
>COG5346 Predicted membrane protein [Function unknown]
Probab=31.30 E-value=39 Score=29.46 Aligned_cols=14 Identities=57% Similarity=0.831 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHH
Q 024505 229 TLQRLIAMVEAERT 242 (266)
Q Consensus 229 TlQRLiaMVeaEr~ 242 (266)
|+|||++|-|-|.+
T Consensus 54 t~~rimaMAekEQa 67 (136)
T COG5346 54 TLQRIMAMAEKEQA 67 (136)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999999987
No 65
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.01 E-value=4.3e+02 Score=24.43 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=23.2
Q ss_pred HHHHHHHHhhHHHHHhhhhhhHHHHhhc
Q 024505 118 RAQMEKERGNLLKALGTQVAEPLRAMVL 145 (266)
Q Consensus 118 ~~~mEkEre~l~r~L~~QV~ePLRaMv~ 145 (266)
-..+-++|+.+-..|.+||++||..+..
T Consensus 79 t~~~A~~~~~~ae~l~~~i~~~l~~l~~ 106 (264)
T cd07654 79 LDAVAQSRQNRCEAYRRYISEPAKTGRS 106 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3455688999999999999999987763
No 66
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=29.45 E-value=4.4e+02 Score=24.05 Aligned_cols=192 Identities=14% Similarity=0.168 Sum_probs=108.6
Q ss_pred CCCccccchHHHhHHHHHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhhhcCCCCCCcchHHHHHHH
Q 024505 33 GSDNVVTDEAELHQHQRLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGSDNTCTSGNTLSKAAL 112 (266)
Q Consensus 33 ~~d~~v~DE~Elq~HQ~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~kYG~en~~~~~~~LarAa~ 112 (266)
..|.++.| +-.+.+.||+ +++.+|+|.-+=.+.+-..-.-|+.|+.-|++= |+...+..++ +.-.
T Consensus 9 T~D~~Fe~--~errf~~lE~------~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~e~---Y~p~~~g~~~--~~~~-- 73 (211)
T cd07611 9 TKDEQFEE--YVQNFKRQET------EGTRLQRELRAYLAAIKGMQEASKKLTESLHEV---YEPDWYGRDD--VKTI-- 73 (211)
T ss_pred cCchHHHH--HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCcccccch--HHHH--
Confidence 34454422 2345555553 567888887555555555556678888888744 3444321122 1111
Q ss_pred HhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhh-----hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCh
Q 024505 113 SYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDAR-----HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNP 187 (266)
Q Consensus 113 ~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDAR-----hLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~ 187 (266)
| ..++-=-++|+.-|.+||.+|+-....=-|--..+ |=-.=|||+|.-++.. .+.+ +
T Consensus 74 --~---~~~d~~~~dl~~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r~~~~kL-----------~~k~--~ 135 (211)
T cd07611 74 --G---EKCDLLWEDFHQKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEAL-----------QTSK--R 135 (211)
T ss_pred --H---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----------hccc--c
Confidence 1 11222233566668889999998876655544433 2334599998877643 2333 2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 024505 188 DLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQRLTL--QRLIAMVEAERTYHQRVLQILDQLEGEVS 259 (266)
Q Consensus 188 e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQrlTl--QRLiaMVeaEr~YHqrv~~ILd~l~~emv 259 (266)
.+..||..||..|+.-+..-..|..+=-.=|-..= +-|+.+ .-+=++|-.+-.||.-+..+-..|.+=|.
T Consensus 136 kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~--~~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~ 207 (211)
T cd07611 136 KDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLW--SRRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMT 207 (211)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999998877776665543221111100 112211 12235677788888888877777766553
No 67
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.15 E-value=5.4e+02 Score=24.34 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=91.3
Q ss_pred hhhhhhhhhhhhhhcCCC------------C-CCcchHHHHHHHHhh------HHHHHHHHHHhhHHHHHhhhhhhHHHH
Q 024505 82 VEIGTKLSEDSRKYGSDN------------T-CTSGNTLSKAALSYG------RARAQMEKERGNLLKALGTQVAEPLRA 142 (266)
Q Consensus 82 ~Ei~~KLaeDc~kYG~en------------~-~~~~~~LarAa~~yg------~a~~~mEkEre~l~r~L~~QV~ePLRa 142 (266)
-|.+.||+.=|++|..-- | .+.|+ +--.+..|. +.-.++-++|.++-..|.++|++|++.
T Consensus 25 kEYS~kL~kL~kky~~Kk~k~ss~lsvgd~p~~tpgs-le~~~S~~~~W~~~L~~Te~~A~~~~~~ae~l~~~~a~~~k~ 103 (260)
T cd07677 25 REFSQKIAAIESEYAQKEQKLASQYLKSDWRGMKADE-RADYRSMYTVWKSFLEGTMQVAQSRINICENYKNLISEPART 103 (260)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccCccCCCCc-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 356777777777776432 1 22232 321112222 234456688999999999999999974
Q ss_pred hh------------cCCCchh--------hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHH
Q 024505 143 MV------------LGAPLDD--------ARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHD 202 (266)
Q Consensus 143 Mv------------~GaPLED--------ARhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~E 202 (266)
.- .+.-|++ -.--...|+...|.+| -+-+-..-..|.+.+ .+-.-.-|+-++.|+++
T Consensus 104 ~r~~ke~~~Kk~~e~~~~lq~El~~~~~EL~KaKK~Y~~~cq~~e-~~ReK~~~e~K~~~s--~~qs~~slqK~~~K~~~ 180 (260)
T cd07677 104 VRLYKEQQLKRCVDQLTKIQAELQETVKDLAKGKKKYFETEQMAH-AVREKADIEAKSKLS--LFQSRISLQKASVKLKA 180 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHhcccc--cccccchHHHHHHHHHH
Confidence 33 2222322 2333467887777766 222222212232221 33334455666667777
Q ss_pred HHHHHH----HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 024505 203 LKSNMA----ILGKEAAAAMAAVESQQQRLTLQRLIAMVEA-ERTYHQRVLQILD 252 (266)
Q Consensus 203 lks~Ma----~LGKEA~aAm~aVEaQQQrlTlQRLiaMVea-Er~YHqrv~~ILd 252 (266)
=.+.|. .---|=-=.|++..+=+.+-=++=|-..++. .-.||.+|.+.|-
T Consensus 181 k~~e~n~k~~~ARNeYLl~L~aaNa~~~kYY~~DLp~l~~~~d~~~~~~~~~~l~ 235 (260)
T cd07677 181 RRSECNSKATHARNDYLLTLAAANAHQDRYYQTDLVNIMKALDGNVYDHLKDYLM 235 (260)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccHHHHHHHhcchHHHHHHHHHH
Confidence 777776 2223334467777777776555444444432 2346777766554
No 68
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=25.29 E-value=1.9e+02 Score=21.54 Aligned_cols=43 Identities=33% Similarity=0.446 Sum_probs=32.5
Q ss_pred hhhhhHHHHhhcCCCchhhhhHHHHHHHH---------HHHHHHHHHHHHHHH
Q 024505 134 TQVAEPLRAMVLGAPLDDARHLAQRYDRM---------RQEAEAQAIEVSKRQ 177 (266)
Q Consensus 134 ~QV~ePLRaMv~GaPLEDARhLaqrYdRm---------RQEaE~qa~eV~rRq 177 (266)
++|..=|+..+ |-+.++|.+++.+=++- +.++|..+..+.+.-
T Consensus 20 ~~Vi~~L~~~~-~~s~~~A~~~a~~v~~~G~avv~~~~~e~ae~~~~~l~~~g 71 (82)
T PF02617_consen 20 EQVIDVLRRVF-GCSEEQARQIAMEVHREGRAVVGTGSREEAEEYAEKLQRAG 71 (82)
T ss_dssp HHHHHHHHHHC----HHHHHHHHHHHHHHSEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHhHcCCEeeeeCCHHHHHHHHHHHHHHh
Confidence 57888999999 99999999999987764 677777777777664
No 69
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.97 E-value=1.5e+02 Score=20.94 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024505 154 HLAQRYDRMRQEAEAQAIEVSKRQAKV 180 (266)
Q Consensus 154 hLaqrYdRmRQEaE~qa~eV~rRq~k~ 180 (266)
.|+..|++|.+|.+...++|.+-..+.
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788888888888888887766554
No 70
>COG5490 Uncharacterized conserved protein [Function unknown]
Probab=24.59 E-value=2.7e+02 Score=24.91 Aligned_cols=104 Identities=24% Similarity=0.321 Sum_probs=71.1
Q ss_pred HHHhcCCCCCCCCccccchHHHhHHH--HHHHHHhhhhhhhhhhhhhhhhccceeeeccchhhhhhhhhhhhhh----h-
Q 024505 23 FKQFGGGGYGGSDNVVTDEAELHQHQ--RLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRK----Y- 95 (266)
Q Consensus 23 ~Kqfg~~gy~~~d~~v~DE~Elq~HQ--~LekLY~STRaaKhFQrdIVRgvEG~is~gsKq~Ei~~KLaeDc~k----Y- 95 (266)
|.+|+--|. .....|=+++..|. .||-|-.|-++|+ -|-.+-|+|+++...+++||.-- |
T Consensus 32 f~~Faekgv---eqs~~a~a~~~th~~knleAleasv~aa~----------~ga~~Lg~kt~a~lr~~ae~~~s~aesl~ 98 (158)
T COG5490 32 FRRFAEKGV---EQSKEAYAKIKTHHEKNLEALEASVEAAA----------AGATSLGLKTIAALRDNAEEIASHAESLR 98 (158)
T ss_pred HHHHHHhhh---hhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------hhHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 466773344 23345667888776 4788888877775 37788899999999999998643 3
Q ss_pred cCCCCCCcchHHHHHHHHhhHHHHHHH------HHHhhHHHHHhhhhhhHHHHhhc
Q 024505 96 GSDNTCTSGNTLSKAALSYGRARAQME------KERGNLLKALGTQVAEPLRAMVL 145 (266)
Q Consensus 96 G~en~~~~~~~LarAa~~yg~a~~~mE------kEre~l~r~L~~QV~ePLRaMv~ 145 (266)
|..|+ + + | -.++-.-+|++.| ++=..+-+.-++-+.+||++-|-
T Consensus 99 aaks~--q-E-l--velQTafark~~Eaaveqa~~~qe~arks~~es~kplk~r~e 148 (158)
T COG5490 99 AAKSL--Q-E-L--VELQTAFARKSFEAAVEQAKEVQELARKSAEESIKPLKARIE 148 (158)
T ss_pred ccCCH--H-H-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 22222 1 1 1 2455566777776 45566788889999999998663
No 71
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=23.07 E-value=1.3e+02 Score=22.63 Aligned_cols=48 Identities=31% Similarity=0.371 Sum_probs=33.1
Q ss_pred HHHHHHHHHH-HHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHH
Q 024505 165 EAEAQAIEVS-KRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEA 214 (266)
Q Consensus 165 EaE~qa~eV~-rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA 214 (266)
++|.+|-... ..=.|++.+ |-.--.||+.||.+..+|...|..|-++-
T Consensus 7 ~~EirakQ~~~eEL~kvk~~--n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 7 EAEIRAKQAIQEELTKVKSA--NLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554322 222345544 66667899999999999999999887764
No 72
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=23.02 E-value=5.6e+02 Score=23.05 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=95.8
Q ss_pred hhhhhhhhhhhhhcC--CCCCCcchHHHHHHHHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhc---------CC----
Q 024505 83 EIGTKLSEDSRKYGS--DNTCTSGNTLSKAALSYGRARAQMEKERGNLLKALGTQVAEPLRAMVL---------GA---- 147 (266)
Q Consensus 83 Ei~~KLaeDc~kYG~--en~~~~~~~LarAa~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~---------Ga---- 147 (266)
+.+.+|..=|+||.. ++.+..| +|..|-..+=+.-..+=+.+..|-.-|.++|.+||....- |-
T Consensus 37 ~Yak~L~kLakk~~~~~~~~~e~g-sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K 115 (258)
T cd07655 37 AYAKKLKEWAKKWRDLIEKGPEYG-TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETK 115 (258)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 456778888888853 1222344 6888877777777777788899999999999999988752 11
Q ss_pred CchhhhhH---------------HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcH
Q 024505 148 PLDDARHL---------------AQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGK 212 (266)
Q Consensus 148 PLEDARhL---------------aqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGK 212 (266)
++|+.-.- ..+|+...+++|.--..+.+.. .+++.+++..-|++. |+......+...=.
T Consensus 116 ~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~---~d~~~~~~eleK~~~---k~~k~~~~~~~~~~ 189 (258)
T cd07655 116 EAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAK---SDTSLSPDQVKKLQD---KVEKCKQEVSKTKD 189 (258)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCccCCHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 33333222 2457777777766544443321 124445665555533 33333222222211
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024505 213 --------------EAAAAMAAVESQQQRLTLQRLIAMVEAERTYHQRV 247 (266)
Q Consensus 213 --------------EA~aAm~aVEaQQQrlTlQRLiaMVeaEr~YHqrv 247 (266)
.=-.-|..|=..=|.+--.||.-|-+.=..||..+
T Consensus 190 ~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~l 238 (258)
T cd07655 190 KYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRHL 238 (258)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12234666666777777778888888778888764
No 73
>PF13982 YbfN: YbfN-like lipoprotein
Probab=22.94 E-value=1.3e+02 Score=24.71 Aligned_cols=16 Identities=38% Similarity=0.625 Sum_probs=13.4
Q ss_pred CCCchhhhhHHHHHHHH
Q 024505 146 GAPLDDARHLAQRYDRM 162 (266)
Q Consensus 146 GaPLEDARhLaqrYdRm 162 (266)
-||-||.+ |.+-|+.-
T Consensus 3 ~ap~eds~-lk~aYsaC 18 (89)
T PF13982_consen 3 PAPKEDSK-LKQAYSAC 18 (89)
T ss_pred CCchHHHH-HHHHHHHH
Confidence 48999999 99999754
No 74
>cd04778 HTH_MerR-like_sg2 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 2). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.35 E-value=3e+02 Score=24.62 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=46.7
Q ss_pred HHhhHHHHHHHHHHhhHHHHHhhhhhhHHHHhhcCCCchhhhhHHHHHHHHHHHHH
Q 024505 112 LSYGRARAQMEKERGNLLKALGTQVAEPLRAMVLGAPLDDARHLAQRYDRMRQEAE 167 (266)
Q Consensus 112 ~~yg~a~~~mEkEre~l~r~L~~QV~ePLRaMv~GaPLEDARhLaqrYdRmRQEaE 167 (266)
-+....+.+.+.+=+-+.+++...|.+|... .+.|-+|.-++++=-.|||-=+.
T Consensus 155 ~~lr~~r~~ad~~a~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~rpla~ 208 (219)
T cd04778 155 DLVAAVRRHADDVAERFVDAVGERIHAREGG--LLPRPADVDEIAQVVQRYRPLAR 208 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cCCCHHHHHHHHHHHHHHHHHHH
Confidence 3556678889999999999999999999998 88999999999998888885443
No 75
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=20.29 E-value=1.1e+03 Score=25.50 Aligned_cols=102 Identities=21% Similarity=0.334 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH------
Q 024505 153 RHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAILGKEAAAAMAAVESQQQ------ 226 (266)
Q Consensus 153 RhLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~LGKEA~aAm~aVEaQQQ------ 226 (266)
-.|-..++.|..+-+....+..+-...... .-.+|+-+|.+|.+|++-+..+-+--..+=..++++..
T Consensus 592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~------~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le 665 (769)
T PF05911_consen 592 KELEEELEKLESEKEELEMELASCQDQLES------LKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLE 665 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888888777777666543 36789999999999999998766555544444444411
Q ss_pred -H------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 024505 227 -R------------LTLQRLIAMVEAERTYHQRVLQILDQLEGEVSN 260 (266)
Q Consensus 227 -r------------lTlQRLiaMVeaEr~YHqrv~~ILd~l~~emvs 260 (266)
| .-+..|-.=++.||..|.-...=--.|+.|+.+
T Consensus 666 ~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r 712 (769)
T PF05911_consen 666 TRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELER 712 (769)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHh
Confidence 1 122333444566777887777767777777654
No 76
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=20.04 E-value=4.1e+02 Score=20.38 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHHHHHHHHHh
Q 024505 154 HLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNPDLALKLDAAEVKLHDLKSNMAIL 210 (266)
Q Consensus 154 hLaqrYdRmRQEaE~qa~eV~rRq~k~re~~gn~e~~~KLq~AE~Kl~Elks~Ma~L 210 (266)
+|-++|.+||.|--..-.++.--+.- +.--..|.+.|-+|+.-+.+.+-.|
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~E------R~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREE------RAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 57789999998866554444332221 3344678888888888877766554
Done!