BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024507
(266 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87216|VIPI_SCHPO Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vip1 PE=1 SV=1
Length = 257
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 38/234 (16%)
Query: 7 VQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGAT 66
V V N+S E++I +FFSF G + I + G+++TA + F+ A + ALLL A
Sbjct: 5 VIVTNISPEVTEKQISDFFSFCGKVSNISTEKS-GETQTAKIQFERPSATKTALLLQDAL 63
Query: 67 IVDQIVSITPAENYVPKPESQEVTVVVNAVSEAPSGNNEGKTSPSSSGRMYVNRAQEVVT 126
+ + IT + A S ++G + R +++
Sbjct: 64 LGQNKIQITSEDGG------------------AASTTDQGGAGGDQAARQEDKPRSAIIS 105
Query: 127 SVLARGSAIRQEAVNKAKAFDEKHQFTANASAKVISFDRRVGFTEKLTVGISVVNEKVKS 186
+L+RG + + K+ I D+ G + K + V+S
Sbjct: 106 ELLSRGYHLSDVTLEKS-----------------IQLDQSYGVSSKFKGILESALSGVRS 148
Query: 187 VDQRLHVSDKT--MAAIFAAERKINDTGSAVKTSRYVTAGTAWLNGAFSKVARA 238
V++R HV++K + FA K+N T S V T + TA A KV A
Sbjct: 149 VNERYHVTEKANEVDNKFAISDKLNRTSSLVSTYFHKALETAAGTSAGQKVQNA 202
>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7
OS=Caenorhabditis elegans GN=rsp-7 PE=3 SV=3
Length = 452
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 2 QQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQ------SKTAFVTFKDAKA 55
++ + + V N+S A I+ F++ G I+ +++ G KTAF+ F D +
Sbjct: 7 EKVKILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERC 66
Query: 56 LEIALLLSGATIVDQIVSITPAENYV-PKPES 86
+E+A L+ ++D + P N V P ES
Sbjct: 67 VEVAQHLTNTVVIDCAIVCLPYPNPVIPDEES 98
>sp|Q6C2Q7|NOP12_YARLI Nucleolar protein 12 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=NOP12 PE=3 SV=1
Length = 509
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 17 HEREIHEFFSFSGDIERIEILREYGQSKT------AFVTFKDAKALEIALLLSGATI 67
E + E FS GD+E + I+R+ KT A+V FKD ++E ALLL+G I
Sbjct: 286 QEESLWEAFSSCGDVEYVRIVRD---PKTNVGKGFAYVQFKDVNSVEQALLLNGKGI 339
>sp|Q05519|SRS11_HUMAN Serine/arginine-rich splicing factor 11 OS=Homo sapiens GN=SRSF11
PE=1 SV=1
Length = 484
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-----QSKTAFVTFKDAKALEI 58
T +QV NVS A ++ F F G I+ + + S+ FV F D + +
Sbjct: 32 TEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVV 91
Query: 59 ALLLSGATIVDQIVSITP-AENYVP 82
A L+ VD+ + + P AE +P
Sbjct: 92 AQHLTNTVFVDRALIVVPYAEGVIP 116
>sp|A2SW84|NCBP2_SINCH Nuclear cap-binding protein subunit 2 OS=Siniperca chuatsi GN=ncbp2
PE=2 SV=1
Length = 165
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKT-------AFVTFKDA 53
++Q+ T+ V N+S E ++HE FS SGD++RI I G K FV +
Sbjct: 35 LKQSHTLYVGNLSFYTTEEQVHELFSKSGDVKRIII----GLDKVKKTACGFCFVEYYTR 90
Query: 54 KALEIAL-LLSGATIVDQIV 72
E A+ ++G + D+I+
Sbjct: 91 AGAENAMRFINGTRLDDRII 110
>sp|P52299|NCBP2_XENLA Nuclear cap-binding protein subunit 2 OS=Xenopus laevis GN=ncbp2
PE=2 SV=2
Length = 153
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEI-LREYGQSKTAFV---TFKDAKAL 56
++Q+ T+ V N+S E +IHE FS SGD++RI + L + ++ F + A A
Sbjct: 33 LKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAE 92
Query: 57 EIALLLSGATIVDQIV 72
+ ++G + D+IV
Sbjct: 93 QAMRFINGTRLDDRIV 108
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILRE--YGQSKT-AFVTFKDAKALEIALL 61
++V V NV E+ F+ G + R+ IL + G K A++ F + + ALL
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114
Query: 62 LSGATIVDQIVSITPAENYVP 82
L+G+ + ++ + +TP VP
Sbjct: 115 LNGSMLHERPLKVTPKRTNVP 135
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSK-TAFVTFKDAKALEIALL 61
RTV V +++ RE+++FF +G + +I+R+ G+SK A+V F +++ A+
Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
Query: 62 LSGATIVDQ--IVSITPAE 78
LSG ++ IV +T AE
Sbjct: 300 LSGKRLLGLPVIVQLTEAE 318
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 2 QQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL 60
+ +RTV V N+ ERE+ + FS G + +I++ AFV F DA+ E A+
Sbjct: 4 RSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
>sp|Q177H0|NCBP2_AEDAE Nuclear cap-binding protein subunit 2 OS=Aedes aegypti GN=Cbp20
PE=3 SV=1
Length = 159
Score = 34.7 bits (78), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEI-LREYGQSKT--AFVTFKDAKALE 57
++ T T+ + N+S E +IHE FS GDI RI + L ++ ++ FV + E
Sbjct: 30 LRLTSTLYIGNLSFYTTEEQIHELFSRCGDIRRIVMGLDKFKKTPCGFCFVEYYARDDAE 89
Query: 58 IAL-LLSGATIVDQIVSITPAENYV 81
A+ ++G + D+IV + +V
Sbjct: 90 SAMRYINGTRLDDRIVRVDWDAGFV 114
>sp|B0BNE4|EPAB2_RAT Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus
GN=Pabpn1l PE=2 SV=1
Length = 269
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILRE--YGQSK-TAFVTFKDAKALEIALL 61
R+V V NV E+ +FS G+I R+ IL + G K A++ F +++ A+
Sbjct: 139 RSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVR 198
Query: 62 LSGATIVDQIVSITPAENYVP 82
L +T +++ + P P
Sbjct: 199 LDESTFRGRVIKVLPKRTNFP 219
>sp|B4M205|NCB2A_DROVI Nuclear cap-binding protein subunit 2-A OS=Drosophila virilis
GN=Cbp20-A PE=3 SV=1
Length = 154
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEI-LREYGQSKTAFV---TFKDAKAL 56
++ + T+ V N+S E +IHE FS GD+ I + L +Y ++ F +K ++A
Sbjct: 26 LRDSSTLYVGNLSFYTAEEQIHELFSRCGDVRMIVMGLDKYKKTPCGFCFVEYYKRSEAE 85
Query: 57 EIALLLSGATIVDQIVSI 74
++G + D+++ +
Sbjct: 86 AAMRFVNGTRLDDRLIRV 103
>sp|Q9P2P5|HECW2_HUMAN E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens GN=HECW2 PE=1
SV=2
Length = 1572
Score = 33.9 bits (76), Expect = 1.3, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 2 QQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL 61
Q+ R+ + N ++ RE + FF+ D+ IEI ++ +S+ F + + L
Sbjct: 229 QERRSTIISNTTNPIWHREKYSFFALLTDVLEIEIKDKFAKSRPIIKRFLGKLTIPVQRL 288
Query: 62 LSGATIVDQIVS 73
L I DQ++S
Sbjct: 289 LERQAIGDQMLS 300
>sp|Q9ZW36|C3H25_ARATH Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis
thaliana GN=At2g29580 PE=2 SV=1
Length = 483
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 2 QQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL- 60
Q RT+ V ++ E++I + F G+IE I IL E AFVT+ + E A
Sbjct: 225 QSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE---KACAFVTYTTREGAEKAAE 281
Query: 61 LLSGATIVD-QIVSITPAENYVPKPE 85
LS +V+ Q + +T VPKP+
Sbjct: 282 ELSNRLVVNGQRLKLTWGRPQVPKPD 307
>sp|C1BY64|NCBP2_ESOLU Nuclear cap-binding protein subunit 2 OS=Esox lucius GN=ncbp2 PE=2
SV=1
Length = 155
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEI-LREYGQSKTAFV---TFKDAKAL 56
++Q+ T+ V N+S E +++E FS SGD++RI I L + ++ F + A A
Sbjct: 35 LKQSNTLYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRADAE 94
Query: 57 EIALLLSGATIVDQIV 72
++G + D+I+
Sbjct: 95 NAMRFVNGTRLDDRII 110
>sp|A6SGN8|EIF3G_BOTFB Eukaryotic translation initiation factor 3 subunit G OS=Botryotinia
fuckeliana (strain B05.10) GN=tif35 PE=3 SV=1
Length = 288
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Query: 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEIL--REYGQSKT-AFVTFKD----AKALE 57
T++V NVS++A E+E+ + F G + R+ + RE G +K AF++F++ AKA E
Sbjct: 209 TLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFQERSDAAKACE 267
>sp|A7EWN6|EIF3G_SCLS1 Eukaryotic translation initiation factor 3 subunit G OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif35
PE=3 SV=1
Length = 288
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Query: 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEIL--REYGQSKT-AFVTFKD----AKALE 57
T++V NVS++A E+E+ + F G + R+ + RE G +K AF++F++ AKA E
Sbjct: 209 TLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRETGLAKGFAFISFQERSDAAKACE 267
>sp|B0W939|NCBP2_CULQU Nuclear cap-binding protein subunit 2 OS=Culex quinquefasciatus
GN=Cbp20 PE=3 SV=1
Length = 160
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEI-LREYGQSKT--AFVTFKDAKALE 57
++ + T+ + N+S E +IHE FS GDI RI + L ++ ++ FV + E
Sbjct: 30 LRNSSTLYIGNLSFYTTEEQIHELFSRCGDIRRIVMGLDKFKKTPCGFCFVEYYARIDSE 89
Query: 58 IAL-LLSGATIVDQIVSITPAENYV 81
A+ ++G + D+IV + +V
Sbjct: 90 YAMRYINGTRLDDRIVRVDWDAGFV 114
>sp|Q5XFR0|EPAB2_MOUSE Embryonic polyadenylate-binding protein 2 OS=Mus musculus
GN=Pabpn1l PE=2 SV=1
Length = 273
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSK-TAFVTFKDAKALEIALL 61
R+V V NV E+ +FS G+I R+ IL + G K A++ F ++++ A+
Sbjct: 143 RSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVG 202
Query: 62 LSGATIVDQIVSITPAENYVP 82
L +T +++ + P P
Sbjct: 203 LDESTFRGRVIKVLPKRTNFP 223
>sp|Q6CKV6|NOP12_KLULA Nucleolar protein 12 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=NOP12 PE=3 SV=2
Length = 462
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKT------AFVTFKDAKALEI 58
R+V V N+ E + + F GDIE + I+R+ SKT A+V FKD +++
Sbjct: 297 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRD---SKTNMGKGFAYVQFKDFQSVSK 353
Query: 59 ALLLSGATI 67
ALLL I
Sbjct: 354 ALLLHEKKI 362
>sp|Q08208|NOP12_YEAST Nucleolar protein 12 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP12 PE=1 SV=1
Length = 459
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKT------AFVTFKDAKAL 56
+ R++ V N+ E + + F GDIE + I+R+ SKT A+V FKD +++
Sbjct: 277 KKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRD---SKTNMGKGFAYVQFKDLQSV 333
Query: 57 EIALLLSGATIVDQ 70
ALLL+ + Q
Sbjct: 334 NKALLLNEKPMKSQ 347
>sp|C8V330|EIF3G_EMENI Eukaryotic translation initiation factor 3 subunit G OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=tif35 PE=3 SV=1
Length = 289
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKT---AFVTFKD 52
T++V NVS+LA E+E+ + F G + R+ + R+ + AF++F D
Sbjct: 210 TLRVTNVSELAEEQELRDLFERFGRVTRVFLARDRETQRAKGFAFISFAD 259
>sp|O13674|MUG24_SCHPO Meiotically up-regulated gene 24 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug24 PE=1 SV=1
Length = 654
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDA 53
+R V + N+ HE+EI E F G IE I+IL + + F+ +DA
Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDA 347
>sp|C0H859|NCBP2_SALSA Nuclear cap-binding protein subunit 2 OS=Salmo salar GN=ncbp2
PE=2 SV=1
Length = 155
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEI 36
++Q T+ V N+S E +++E FS SGD++RI I
Sbjct: 35 LKQANTLYVGNLSFYTTEEQVYELFSKSGDVKRIII 70
>sp|A4RHN3|EIF3G_MAGO7 Eukaryotic translation initiation factor 3 subunit G OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=TIF35 PE=3 SV=1
Length = 303
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEIL--REYGQSKT-AFVTFKD 52
T++V NVS++A E+E+ + F G + R+ + R+ G +K AF++F D
Sbjct: 224 TLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFAD 273
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 9 VKNVSDLAHEREIHEFFSFSGDIERIEILREY-GQS-KTAFVTFKDAKALEIALLLSGAT 66
VK + E ++ EFFS GD+ ++++++ G+S K AF+ +K A A E A+ +
Sbjct: 6 VKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFNKS 65
Query: 67 IVD 69
+D
Sbjct: 66 FID 68
>sp|Q8JGR6|NCBP2_DANRE Nuclear cap-binding protein subunit 2 OS=Danio rerio GN=ncbp2
PE=2 SV=2
Length = 155
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEI 36
++Q+ T+ V N+S E ++HE F+ GD++RI I
Sbjct: 35 LKQSATLYVGNLSFYTTEEQVHELFAKCGDVKRIII 70
>sp|Q2H0U6|EIF3G_CHAGB Eukaryotic translation initiation factor 3 subunit G OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=TIF35 PE=3 SV=1
Length = 303
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEIL--REYGQSKT-AFVTFKD 52
T++V NVS++A E+E+ + F G + R+ + R+ G +K AF+++ D
Sbjct: 224 TLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGMAKGFAFISYAD 273
>sp|Q9HNK9|IF2G_HALSA Translation initiation factor 2 subunit gamma OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=eif2g PE=3 SV=1
Length = 414
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 48 VTFKDAKALE--IALLLSGATIVDQIVSITPAENYVPKPESQEVTVVVNAVS 97
V+F DA E +A +LSGA ++D V + A VP+P+++E + ++ +
Sbjct: 87 VSFVDAPGHETLMATMLSGAALMDGAVLVVGANEPVPQPQTEEHLMALDIIG 138
>sp|B0R6Y7|IF2G_HALS3 Translation initiation factor 2 subunit gamma OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eif2g
PE=3 SV=1
Length = 414
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 48 VTFKDAKALE--IALLLSGATIVDQIVSITPAENYVPKPESQEVTVVVNAVS 97
V+F DA E +A +LSGA ++D V + A VP+P+++E + ++ +
Sbjct: 87 VSFVDAPGHETLMATMLSGAALMDGAVLVVGANEPVPQPQTEEHLMALDIIG 138
>sp|C7TC36|DIVIB_LACRG Cell division protein DivIB OS=Lactobacillus rhamnosus (strain ATCC
53103 / GG) GN=divIB PE=3 SV=1
Length = 284
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 215 VKTSRYVTAGTAWLNGAFSKVARAGQV--AGTKTREKFSVAVSNLTAKESP 263
+KTS Y T G + A+ K+ G+V AGT+T S TAKE P
Sbjct: 145 IKTSEYQTVGYVYQKHAYHKILVTGEVLAAGTQTPVTTYPVFSGFTAKELP 195
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 4 TRTVQVKNVSDLAHEREIHE----FFSFSGDIERIEIL--REYGQSKT-AFVTFKDAKAL 56
++++ VK E +I E F+ G+I R+ + RE G SK A++ FKD +
Sbjct: 410 SQSIFVKGFDSSLEESKIRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASF 469
Query: 57 EIALLLSGATI 67
AL LSG+ +
Sbjct: 470 SKALELSGSDL 480
>sp|Q4IQW0|NOP12_GIBZE Nucleolar protein 12 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=NOP12 PE=3 SV=1
Length = 559
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 11/61 (18%)
Query: 10 KNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKT------AFVTFKDAKALEIALLLS 63
K SD+ E + FS G +E + ++R+ SKT A+V F DA +E ALLL
Sbjct: 359 KTPSDI--EEGLWRTFSTQGKVENVRVVRD---SKTRVGKGFAYVQFYDANDVEAALLLD 413
Query: 64 G 64
G
Sbjct: 414 G 414
>sp|Q6DES0|NCBP2_XENTR Nuclear cap-binding protein subunit 2 OS=Xenopus tropicalis
GN=ncbp2 PE=2 SV=1
Length = 153
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERI 34
++ + T+ V N+S E +IHE FS SGD+++I
Sbjct: 33 LKHSCTLYVGNLSFYTTEEQIHELFSKSGDVKKI 66
>sp|Q6MFP4|EIF3G_NEUCR Eukaryotic translation initiation factor 3 subunit G OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=tif-35 PE=3 SV=2
Length = 297
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEIL--REYGQSKT-AFVTFKD 52
T++V NVS++A E+E+ + F G + R+ + R+ G +K AF++F D
Sbjct: 218 TLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFAD 267
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKT---AFVTFKDAKALEIALL 61
+ + V + + E + ++F G IE IEI+ + G K AFVTF D +++ ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 62 LSGATIVDQIVSITPAENYVPKPE 85
T+ + A +PK E
Sbjct: 165 QKYHTVKGHNCEVRKA---LPKQE 185
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 9 VKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKT---AFVTFKDAKALE 57
V + + E + E+F G IE IEI+ + G K AFVTF+D +++
Sbjct: 109 VGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVD 160
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 25 FSFSGDIERIEILREY--GQSKT-AFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80
FS G+I I ++R+ G+SK F+ ++D ++ +A+ +G I + + + NY
Sbjct: 56 FSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANY 115
Query: 81 VPKPESQEVTVVVNAVSEAPSGNNEGKTSPSS 112
ES++V V + E G KT PSS
Sbjct: 116 RAPQESEDVDDVTRELQEKGCG---AKTPPSS 144
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 2 QQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTA-------FVTFKDAK 54
Q T + V+N+ AH REI E FS G+++ + + ++ + T F+T +DAK
Sbjct: 829 QTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAK 888
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 5 RTVQVKNV-SDLAHEREIHEFFSFSGDIERIEILREYGQ-SKTAFVTFKDAKALEIALLL 62
RTV V N+ S ++ EFF G+++ + + + Q ++ AFV F D ++ AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 63 SGATIVDQIVSITPAENYVPKPE-------SQEVTVVVNAVSEA 99
+G D+ + I + N + KP ++E+ V+ V EA
Sbjct: 126 NGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVREA 169
>sp|Q04002|SCC2_YEAST Sister chromatid cohesion protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SCC2 PE=1 SV=1
Length = 1493
Score = 31.2 bits (69), Expect = 7.5, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 10 KNVSDLAHEREIHEFFSFSGD-IERIEILR-EYGQSKTAFVTFKDAKALEIALLLSGATI 67
KN S+L E I E +F D IE ++IL EYG K F TF++A L + +G +
Sbjct: 296 KNDSNLHRESYIMEPVNFLSDLIESLKILTIEYGSLKIEFDTFQEALELLPKYIRNGPFL 355
Query: 68 VDQIVS 73
D + +
Sbjct: 356 DDNVTA 361
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 5 RTVQVKNV-SDLAHEREIHEFFSFSGDIERIEILREYGQ-SKTAFVTFKDAKALEIALLL 62
RTV V N+ S ++ EFF G+++ + + + Q ++ AFV F D ++ AL
Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 128
Query: 63 SGATIVDQIVSITPAENYVPKPE-------SQEVTVVVNAVSEA 99
+G D+ + I + N + KP ++E+ V+ V EA
Sbjct: 129 NGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVREA 172
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILRE-YGQSKT-AFVTFKDAKALEIALL-L 62
V VKN+ D + ++ E F G E ++++R+ G+SK FV ++ +A + A+L L
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 63 SGATIVDQIVSITPAE 78
G +I +++ + A+
Sbjct: 260 HGKSIDGKVLYVGRAQ 275
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILRE-YGQSKT-AFVTFKDAKALEIALL-L 62
V VKN+ D + ++ E F G E ++++R+ G+SK FV ++ +A + A+L L
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 63 SGATIVDQIVSITPAE 78
G +I +++ + A+
Sbjct: 260 HGKSIDGKVLYVGRAQ 275
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILRE-YGQSKT-AFVTFKDAKALEIALL-L 62
V VKN+ D + ++ E F G E ++++R+ G+SK FV ++ +A + A+L L
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 63 SGATIVDQIVSITPAE 78
G +I +++ + A+
Sbjct: 260 HGKSIDGKVLYVGRAQ 275
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILRE-YGQSKT-AFVTFKDAKALEIALL-L 62
V VKN+ D + ++ E F G E ++++R+ G+SK FV ++ +A + A+L L
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 63 SGATIVDQIVSITPAE 78
G +I +++ + A+
Sbjct: 260 HGKSIDGKVLYVGRAQ 275
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILRE-YGQSKT-AFVTFKDAKALEIALL-L 62
V VKN+ D + ++ E F G E ++++R+ G+SK FV ++ +A + A+L L
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 63 SGATIVDQIVSITPAE 78
G +I +++ + A+
Sbjct: 260 HGKSIDGKVLYVGRAQ 275
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILRE-YGQSKT-AFVTFKDAKALEIALL-L 62
V VKN+ D + ++ E F G E ++++R+ G+SK FV ++ +A + A+L L
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 63 SGATIVDQIVSITPAE 78
G +I +++ + A+
Sbjct: 260 HGKSIDGKVLYVGRAQ 275
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 25 FSFSGDIERIEILREY--GQSKT-AFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80
FS G+I I ++R+ G+SK F+ ++D ++ +A+ +G I + + + NY
Sbjct: 56 FSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNY 115
Query: 81 VPKPESQEVTVVVNAVSEAPSGNNEGKTSPSS 112
ES++V V + E G KT PSS
Sbjct: 116 RAPQESEDVDDVTRELQEKGCGV---KTPPSS 144
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 5 RTVQVKNV-SDLAHEREIHEFFSFSGDIERIEILREYGQ-SKTAFVTFKDAKALEIALLL 62
RTV V N+ S ++ EFF G+++ + + + Q ++ AFV F D ++ AL
Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 128
Query: 63 SGATIVDQIVSITPAENYVPKPE-------SQEVTVVVNAVSEA 99
+G D+ + I + N + KP ++E+ V+ V EA
Sbjct: 129 NGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVREA 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.125 0.328
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,914,174
Number of Sequences: 539616
Number of extensions: 3108659
Number of successful extensions: 8120
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 8081
Number of HSP's gapped (non-prelim): 122
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)