Query 024507
Match_columns 266
No_of_seqs 265 out of 1093
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:06:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03120 nucleic acid binding 100.0 3.6E-80 7.9E-85 562.0 24.0 242 1-257 1-242 (260)
2 PLN03121 nucleic acid binding 100.0 9.2E-77 2E-81 533.7 19.9 238 1-248 1-242 (243)
3 PLN03134 glycine-rich RNA-bind 99.6 1E-14 2.2E-19 122.7 11.4 76 4-79 34-113 (144)
4 PF00076 RRM_1: RNA recognitio 99.6 1.1E-14 2.3E-19 104.1 8.1 67 7-73 1-70 (70)
5 KOG0121 Nuclear cap-binding pr 99.5 4E-14 8.6E-19 117.9 7.1 80 4-83 36-119 (153)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.6E-13 3.5E-18 127.2 10.4 74 5-78 270-347 (352)
7 PF14259 RRM_6: RNA recognitio 99.5 3.6E-13 7.9E-18 97.6 8.8 67 7-73 1-70 (70)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 3.6E-13 7.8E-18 124.9 9.6 75 4-78 3-81 (352)
9 smart00362 RRM_2 RNA recogniti 99.4 2.5E-12 5.4E-17 89.8 8.6 70 6-75 1-72 (72)
10 TIGR01659 sex-lethal sex-letha 99.4 1.4E-12 3E-17 124.1 9.6 74 4-77 107-184 (346)
11 TIGR01622 SF-CC1 splicing fact 99.3 3.8E-12 8.3E-17 122.5 10.1 74 4-77 89-165 (457)
12 PLN03213 repressor of silencin 99.3 5.4E-12 1.2E-16 123.7 9.1 75 4-79 10-87 (759)
13 cd00590 RRM RRM (RNA recogniti 99.3 2E-11 4.3E-16 85.6 9.2 70 6-75 1-73 (74)
14 TIGR01645 half-pint poly-U bin 99.3 8.9E-12 1.9E-16 126.1 9.5 77 3-79 106-186 (612)
15 KOG0125 Ataxin 2-binding prote 99.3 7.7E-12 1.7E-16 117.4 7.7 76 4-79 96-173 (376)
16 TIGR01628 PABP-1234 polyadenyl 99.3 1.3E-11 2.9E-16 122.5 9.8 73 5-77 1-77 (562)
17 TIGR01659 sex-lethal sex-letha 99.3 1.9E-11 4.2E-16 116.3 9.8 76 4-79 193-274 (346)
18 smart00360 RRM RNA recognition 99.3 2.3E-11 5E-16 84.4 7.6 67 9-75 1-71 (71)
19 COG0724 RNA-binding proteins ( 99.2 3.5E-11 7.6E-16 102.2 9.5 74 5-78 116-193 (306)
20 TIGR01622 SF-CC1 splicing fact 99.2 3.8E-11 8.3E-16 115.6 10.8 78 5-82 187-268 (457)
21 KOG0107 Alternative splicing f 99.2 2.3E-11 5E-16 105.8 7.9 75 3-79 9-84 (195)
22 TIGR01645 half-pint poly-U bin 99.2 3.9E-11 8.4E-16 121.5 10.5 75 5-79 205-283 (612)
23 TIGR01628 PABP-1234 polyadenyl 99.2 6.1E-11 1.3E-15 117.8 10.4 76 4-79 285-363 (562)
24 TIGR01648 hnRNP-R-Q heterogene 99.2 6.5E-11 1.4E-15 119.4 9.8 73 1-78 230-305 (578)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.1E-10 2.4E-15 113.8 11.2 76 4-79 295-374 (509)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.2 6.8E-11 1.5E-15 115.2 8.5 78 4-84 175-264 (509)
27 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 1.2E-10 2.6E-15 114.5 9.5 72 4-78 2-76 (481)
28 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.9E-10 4.2E-15 113.1 10.8 74 4-79 275-350 (481)
29 KOG0148 Apoptosis-promoting RN 99.1 4E-10 8.6E-15 103.9 9.4 74 3-79 163-237 (321)
30 TIGR01648 hnRNP-R-Q heterogene 99.1 2.7E-10 5.9E-15 114.9 8.7 74 4-77 58-135 (578)
31 KOG0105 Alternative splicing f 99.1 2.9E-10 6.3E-15 100.2 7.0 78 4-81 6-84 (241)
32 KOG4207 Predicted splicing fac 99.0 2.5E-10 5.3E-15 102.0 5.9 76 3-78 12-91 (256)
33 KOG0149 Predicted RNA-binding 99.0 4.6E-10 1E-14 101.4 6.8 74 5-78 13-89 (247)
34 PF13893 RRM_5: RNA recognitio 99.0 1.2E-09 2.5E-14 76.7 7.5 54 21-76 1-55 (56)
35 KOG0122 Translation initiation 99.0 1.1E-09 2.3E-14 99.7 8.9 75 3-77 188-266 (270)
36 KOG0114 Predicted RNA-binding 99.0 1.7E-09 3.6E-14 87.6 7.9 74 4-77 18-92 (124)
37 KOG0113 U1 small nuclear ribon 99.0 2E-09 4.3E-14 100.2 8.5 72 5-76 102-177 (335)
38 KOG0108 mRNA cleavage and poly 98.9 1.8E-09 3.9E-14 105.7 8.2 78 5-82 19-100 (435)
39 KOG0126 Predicted RNA-binding 98.9 3.3E-10 7.2E-15 99.4 1.8 82 3-84 34-119 (219)
40 KOG0131 Splicing factor 3b, su 98.9 1.7E-09 3.7E-14 94.8 5.8 76 3-78 8-87 (203)
41 KOG0123 Polyadenylate-binding 98.9 4.1E-09 8.9E-14 101.3 8.4 76 3-79 75-152 (369)
42 smart00361 RRM_1 RNA recogniti 98.9 5.8E-09 1.3E-13 76.9 7.2 58 18-75 2-70 (70)
43 KOG0130 RNA-binding protein RB 98.9 2.2E-09 4.8E-14 90.5 5.5 73 5-77 73-149 (170)
44 KOG4209 Splicing factor RNPS1, 98.8 4.5E-09 9.7E-14 95.3 6.1 80 1-80 98-180 (231)
45 KOG0117 Heterogeneous nuclear 98.8 6.6E-09 1.4E-13 101.0 7.0 74 1-79 256-330 (506)
46 KOG4211 Splicing factor hnRNP- 98.8 9E-09 1.9E-13 100.9 7.4 77 1-78 7-84 (510)
47 KOG0124 Polypyrimidine tract-b 98.8 7E-09 1.5E-13 99.1 5.1 75 5-79 114-192 (544)
48 KOG0127 Nucleolar protein fibr 98.8 1.3E-08 2.8E-13 101.1 6.7 78 1-78 1-83 (678)
49 KOG4212 RNA-binding protein hn 98.7 2.6E-08 5.6E-13 97.0 7.8 76 4-79 44-123 (608)
50 KOG0127 Nucleolar protein fibr 98.7 3.5E-08 7.5E-13 98.1 8.3 75 4-78 292-376 (678)
51 KOG0111 Cyclophilin-type pepti 98.7 1.2E-08 2.7E-13 92.0 4.6 75 4-78 10-88 (298)
52 KOG0117 Heterogeneous nuclear 98.7 4E-08 8.7E-13 95.6 8.1 74 4-77 83-161 (506)
53 KOG4676 Splicing factor, argin 98.7 2E-08 4.2E-13 96.6 5.1 79 5-83 8-92 (479)
54 KOG0145 RNA-binding protein EL 98.6 1.5E-07 3.2E-12 86.9 8.8 74 4-77 278-355 (360)
55 KOG0153 Predicted RNA-binding 98.5 2E-07 4.4E-12 88.4 7.4 70 4-76 228-299 (377)
56 KOG0123 Polyadenylate-binding 98.5 2.4E-07 5.1E-12 89.3 7.5 71 5-78 2-73 (369)
57 KOG0109 RNA-binding protein LA 98.5 1.8E-07 3.9E-12 87.3 5.8 71 5-80 3-74 (346)
58 KOG0145 RNA-binding protein EL 98.5 4E-07 8.8E-12 84.1 7.8 74 5-78 42-119 (360)
59 KOG4212 RNA-binding protein hn 98.5 2.3E-07 4.9E-12 90.5 6.1 71 4-76 536-607 (608)
60 KOG0415 Predicted peptidyl pro 98.5 2.4E-07 5.3E-12 88.4 5.9 73 5-77 240-316 (479)
61 KOG0116 RasGAP SH3 binding pro 98.4 3.7E-07 8.1E-12 89.2 7.0 76 4-79 288-366 (419)
62 KOG0147 Transcriptional coacti 98.4 2.8E-07 6.1E-12 91.5 6.2 77 7-83 281-361 (549)
63 KOG0110 RNA-binding protein (R 98.4 5E-07 1.1E-11 91.9 7.6 72 7-78 518-596 (725)
64 KOG0148 Apoptosis-promoting RN 98.4 4.6E-07 9.9E-12 83.9 6.6 72 6-77 64-139 (321)
65 KOG4206 Spliceosomal protein s 98.4 7.1E-07 1.5E-11 80.3 7.4 76 4-79 9-89 (221)
66 KOG4205 RNA-binding protein mu 98.4 2.7E-07 5.8E-12 87.1 4.7 77 3-79 5-84 (311)
67 KOG0144 RNA-binding protein CU 98.4 2.7E-07 5.8E-12 89.8 4.7 76 4-79 124-205 (510)
68 KOG1548 Transcription elongati 98.4 8.9E-07 1.9E-11 84.1 7.6 74 5-78 135-219 (382)
69 KOG0132 RNA polymerase II C-te 98.3 1.3E-06 2.8E-11 89.8 7.5 77 4-83 421-498 (894)
70 KOG4454 RNA binding protein (R 98.3 2.7E-07 5.9E-12 83.3 1.9 81 3-83 8-90 (267)
71 KOG4205 RNA-binding protein mu 98.3 9.8E-07 2.1E-11 83.3 5.6 76 4-79 97-175 (311)
72 KOG0109 RNA-binding protein LA 98.2 9.1E-07 2E-11 82.6 4.4 70 4-78 78-148 (346)
73 KOG0144 RNA-binding protein CU 98.2 2.5E-06 5.4E-11 83.1 6.6 74 5-78 35-115 (510)
74 KOG0147 Transcriptional coacti 98.2 5.3E-07 1.1E-11 89.6 1.6 75 3-77 178-255 (549)
75 KOG0533 RRM motif-containing p 98.2 5.4E-06 1.2E-10 75.9 7.5 75 5-79 84-161 (243)
76 KOG0131 Splicing factor 3b, su 98.1 4.5E-06 9.7E-11 73.6 4.9 74 4-77 96-174 (203)
77 KOG4661 Hsp27-ERE-TATA-binding 98.1 7.7E-06 1.7E-10 82.2 6.8 77 4-80 405-485 (940)
78 KOG0106 Alternative splicing f 98.0 6.4E-06 1.4E-10 74.3 4.0 69 5-78 2-71 (216)
79 KOG0110 RNA-binding protein (R 98.0 6.7E-06 1.5E-10 83.9 4.7 75 5-79 614-692 (725)
80 KOG0124 Polypyrimidine tract-b 98.0 1.6E-05 3.5E-10 76.5 6.9 74 5-78 211-288 (544)
81 PF14605 Nup35_RRM_2: Nup53/35 97.9 2.5E-05 5.5E-10 55.4 5.3 52 5-60 2-53 (53)
82 PF08777 RRM_3: RNA binding mo 97.9 3.4E-05 7.4E-10 62.0 6.0 68 5-75 2-75 (105)
83 KOG4208 Nucleolar RNA-binding 97.9 3.9E-05 8.5E-10 68.6 6.8 71 6-76 51-126 (214)
84 KOG4660 Protein Mei2, essentia 97.8 1.1E-05 2.3E-10 80.6 3.4 68 4-73 75-143 (549)
85 KOG1995 Conserved Zn-finger pr 97.8 1.7E-05 3.8E-10 75.6 3.7 76 4-79 66-153 (351)
86 KOG0146 RNA-binding protein ET 97.8 2.9E-05 6.4E-10 72.2 4.7 74 3-76 284-361 (371)
87 KOG1457 RNA binding protein (c 97.8 0.00011 2.4E-09 66.9 8.3 76 4-79 34-117 (284)
88 KOG4211 Splicing factor hnRNP- 97.8 4.9E-05 1.1E-09 75.1 6.5 73 5-77 104-179 (510)
89 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00023 5E-09 57.0 8.2 73 4-77 6-89 (100)
90 PF11608 Limkain-b1: Limkain b 97.6 0.00027 5.8E-09 55.4 7.2 66 5-77 3-74 (90)
91 KOG0146 RNA-binding protein ET 97.6 7.7E-05 1.7E-09 69.5 4.4 64 3-66 18-84 (371)
92 KOG0106 Alternative splicing f 97.3 0.00014 3.1E-09 65.6 3.1 65 5-74 100-165 (216)
93 KOG4210 Nuclear localization s 97.2 0.00021 4.6E-09 66.8 2.6 72 5-76 185-260 (285)
94 KOG1457 RNA binding protein (c 97.1 0.00048 1E-08 62.8 3.8 62 5-67 211-273 (284)
95 PF04059 RRM_2: RNA recognitio 97.0 0.0049 1.1E-07 49.2 8.5 64 5-68 2-71 (97)
96 KOG3152 TBP-binding protein, a 97.0 0.00034 7.3E-09 64.6 1.6 66 6-71 76-157 (278)
97 KOG1190 Polypyrimidine tract-b 97.0 0.0034 7.4E-08 61.4 8.5 72 5-78 298-371 (492)
98 COG5175 MOT2 Transcriptional r 97.0 0.0015 3.3E-08 62.6 6.0 72 5-76 115-199 (480)
99 KOG0151 Predicted splicing reg 96.9 0.002 4.3E-08 66.5 7.0 74 4-77 174-254 (877)
100 PF08952 DUF1866: Domain of un 96.7 0.0065 1.4E-07 51.9 7.4 69 5-78 28-105 (146)
101 KOG4307 RNA binding protein RB 96.6 0.0066 1.4E-07 62.8 7.5 71 5-75 868-942 (944)
102 KOG1855 Predicted RNA-binding 96.3 0.0036 7.8E-08 61.5 3.6 63 4-66 231-309 (484)
103 KOG0120 Splicing factor U2AF, 96.2 0.0044 9.6E-08 62.1 4.0 75 4-78 289-367 (500)
104 KOG4206 Spliceosomal protein s 96.0 0.026 5.7E-07 51.2 7.7 72 4-77 146-219 (221)
105 KOG0129 Predicted RNA-binding 95.7 0.027 5.9E-07 56.4 6.9 74 4-78 259-353 (520)
106 KOG1190 Polypyrimidine tract-b 95.7 0.022 4.8E-07 55.9 6.2 70 5-76 415-487 (492)
107 KOG1548 Transcription elongati 95.6 0.069 1.5E-06 51.4 9.1 76 3-79 264-351 (382)
108 KOG1365 RNA-binding protein Fu 95.5 0.017 3.6E-07 56.4 4.5 71 6-76 163-239 (508)
109 KOG0128 RNA-binding protein SA 95.5 0.0015 3.2E-08 68.4 -2.9 71 5-75 668-742 (881)
110 KOG0129 Predicted RNA-binding 95.4 0.033 7.2E-07 55.8 6.2 74 4-78 370-452 (520)
111 KOG1365 RNA-binding protein Fu 95.1 0.026 5.6E-07 55.1 4.4 74 5-78 281-360 (508)
112 PLN03120 nucleic acid binding 95.0 0.014 3.1E-07 54.2 2.2 51 134-184 136-193 (260)
113 KOG4285 Mitotic phosphoprotein 94.7 0.097 2.1E-06 49.8 6.9 70 6-79 199-269 (350)
114 KOG1456 Heterogeneous nuclear 94.4 0.22 4.9E-06 48.7 8.8 74 4-79 287-362 (494)
115 KOG0226 RNA-binding proteins [ 94.3 0.062 1.4E-06 50.0 4.5 73 4-76 190-266 (290)
116 KOG4307 RNA binding protein RB 94.3 0.074 1.6E-06 55.4 5.5 69 5-76 3-73 (944)
117 KOG0120 Splicing factor U2AF, 93.9 0.16 3.4E-06 51.3 7.0 59 19-77 424-489 (500)
118 KOG0105 Alternative splicing f 93.6 0.18 3.9E-06 45.2 6.0 60 5-68 116-176 (241)
119 KOG2314 Translation initiation 93.2 0.14 3.1E-06 52.1 5.3 72 5-76 59-140 (698)
120 KOG2202 U2 snRNP splicing fact 93.2 0.046 9.9E-07 50.6 1.6 59 19-77 83-145 (260)
121 PF10309 DUF2414: Protein of u 93.0 0.46 9.9E-06 35.1 6.4 52 5-61 6-60 (62)
122 PLN03121 nucleic acid binding 92.9 0.18 3.9E-06 46.5 5.1 62 150-227 131-192 (243)
123 KOG4849 mRNA cleavage factor I 92.7 0.13 2.8E-06 49.9 4.1 74 5-78 81-160 (498)
124 KOG1996 mRNA splicing factor [ 92.4 0.3 6.6E-06 46.4 6.0 59 18-76 300-363 (378)
125 KOG0115 RNA-binding protein p5 92.1 0.16 3.5E-06 47.2 3.8 76 5-80 32-114 (275)
126 PF15023 DUF4523: Protein of u 91.7 0.64 1.4E-05 40.2 6.6 66 5-74 87-156 (166)
127 PF03467 Smg4_UPF3: Smg-4/UPF3 91.2 0.36 7.8E-06 42.1 4.8 68 4-71 7-84 (176)
128 KOG0112 Large RNA-binding prot 89.8 0.073 1.6E-06 56.5 -0.8 71 4-74 372-445 (975)
129 KOG0128 RNA-binding protein SA 89.4 0.23 4.9E-06 52.6 2.4 72 5-76 737-811 (881)
130 PF07576 BRAP2: BRCA1-associat 89.2 2.4 5.3E-05 34.5 7.7 66 5-70 13-82 (110)
131 KOG2068 MOT2 transcription fac 88.0 0.21 4.6E-06 47.8 1.0 71 6-76 79-159 (327)
132 KOG2135 Proteins containing th 87.6 0.28 6E-06 49.1 1.5 57 17-76 386-442 (526)
133 PF08675 RNA_bind: RNA binding 87.4 2.8 6.1E-05 33.0 6.7 52 6-63 11-63 (87)
134 KOG0804 Cytoplasmic Zn-finger 86.4 1.9 4.1E-05 43.1 6.5 67 4-70 74-143 (493)
135 KOG2253 U1 snRNP complex, subu 85.1 0.43 9.4E-06 49.3 1.5 69 3-77 39-108 (668)
136 KOG1456 Heterogeneous nuclear 84.6 1.1 2.4E-05 44.0 3.9 65 5-72 32-99 (494)
137 PF04847 Calcipressin: Calcipr 84.4 2.7 5.8E-05 37.1 6.0 58 17-77 8-68 (184)
138 PF03880 DbpA: DbpA RNA bindin 83.7 4.2 9.2E-05 30.2 6.0 58 14-77 11-74 (74)
139 KOG4676 Splicing factor, argin 82.5 0.38 8.3E-06 47.3 -0.1 73 4-76 52-126 (479)
140 PF03468 XS: XS domain; Inter 82.2 2.5 5.4E-05 34.6 4.6 59 6-64 10-78 (116)
141 KOG0112 Large RNA-binding prot 78.7 3 6.5E-05 44.8 4.8 74 5-81 456-532 (975)
142 KOG2193 IGF-II mRNA-binding pr 76.2 2.9 6.3E-05 41.8 3.7 66 5-76 2-72 (584)
143 TIGR03636 L23_arch archaeal ri 74.9 8.4 0.00018 29.5 5.2 52 6-57 15-68 (77)
144 KOG4008 rRNA processing protei 73.6 3.4 7.4E-05 38.2 3.2 63 4-66 40-121 (261)
145 PRK14548 50S ribosomal protein 73.5 9 0.0002 29.8 5.1 53 6-58 22-76 (84)
146 KOG2416 Acinus (induces apopto 72.6 2.6 5.7E-05 43.5 2.5 71 4-77 444-519 (718)
147 KOG4210 Nuclear localization s 71.7 1.9 4.2E-05 40.5 1.2 71 4-74 88-162 (285)
148 PF15513 DUF4651: Domain of un 71.5 6 0.00013 29.3 3.5 20 19-38 9-28 (62)
149 KOG2591 c-Mpl binding protein, 68.7 12 0.00026 38.6 6.1 65 5-73 176-245 (684)
150 PF01296 Galanin: Galanin; In 62.0 1.3 2.8E-05 27.8 -1.4 26 128-153 4-29 (29)
151 PF00276 Ribosomal_L23: Riboso 43.5 51 0.0011 25.6 4.6 52 6-57 21-87 (91)
152 PRK05738 rplW 50S ribosomal pr 43.2 45 0.00098 26.1 4.3 50 5-54 20-84 (92)
153 CHL00030 rpl23 ribosomal prote 40.2 47 0.001 26.3 4.0 51 5-55 19-84 (93)
154 cd04908 ACT_Bt0572_1 N-termina 39.7 1.3E+02 0.0028 21.0 6.6 57 7-66 6-63 (66)
155 COG0724 RNA-binding proteins ( 34.9 76 0.0016 26.4 4.8 47 4-50 225-271 (306)
156 PTZ00191 60S ribosomal protein 32.4 1.3E+02 0.0029 25.8 5.8 55 6-60 83-140 (145)
157 PRK12280 rplW 50S ribosomal pr 32.1 92 0.002 27.1 4.8 36 5-40 22-59 (158)
158 PF09707 Cas_Cas2CT1978: CRISP 31.0 1.1E+02 0.0023 24.0 4.6 48 5-52 26-73 (86)
159 KOG2318 Uncharacterized conser 29.7 2.1E+02 0.0045 30.1 7.5 70 4-73 174-299 (650)
160 PF07292 NID: Nmi/IFP 35 domai 28.9 38 0.00083 26.6 1.8 22 4-25 52-73 (88)
161 COG5353 Uncharacterized protei 28.9 1.7E+02 0.0036 25.6 5.7 51 5-55 88-154 (161)
162 KOG4574 RNA-binding protein (c 28.1 39 0.00085 36.7 2.2 63 13-78 307-372 (1007)
163 KOG2891 Surface glycoprotein [ 27.4 18 0.00039 34.6 -0.3 63 5-67 150-247 (445)
164 cd04889 ACT_PDH-BS-like C-term 27.2 2E+02 0.0042 19.2 5.7 42 19-60 13-55 (56)
165 cd04883 ACT_AcuB C-terminal AC 27.1 2.2E+02 0.0047 19.7 6.2 52 17-68 14-69 (72)
166 PF02714 DUF221: Domain of unk 23.3 91 0.002 28.8 3.5 30 46-77 1-31 (325)
167 PF10567 Nab6_mRNP_bdg: RNA-re 23.2 80 0.0017 30.3 3.1 52 4-55 15-76 (309)
168 CHL00128 psbW photosystem II p 22.8 1E+02 0.0022 25.5 3.2 28 31-58 15-43 (113)
169 TIGR03047 PS_II_psb28 photosys 22.3 1E+02 0.0022 25.3 3.2 28 31-58 12-40 (109)
170 PF14160 FAM110_C: Centrosome- 21.6 50 0.0011 27.1 1.2 14 16-29 18-31 (111)
171 KOG3430 Dynein light chain typ 20.3 1.4E+02 0.003 23.8 3.4 33 138-170 20-54 (90)
172 PF11848 DUF3368: Domain of un 20.1 1.5E+02 0.0032 20.2 3.2 26 120-145 20-45 (48)
No 1
>PLN03120 nucleic acid binding protein; Provisional
Probab=100.00 E-value=3.6e-80 Score=562.03 Aligned_cols=242 Identities=54% Similarity=0.775 Sum_probs=224.9
Q ss_pred CCCccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCCC
Q 024507 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENY 80 (266)
Q Consensus 1 M~~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~~ 80 (266)
|.+.++|||+|||+.+||++|++||++||+|++|+|+.+++++|||||+|++++++++||+|||..|+|++|+|+++.+|
T Consensus 1 ~~~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 1 VMQVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 45679999999999999999999999999999999999987789999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhccccCCCCCCCCCCCCCCCCCccccchHHHHHHHHhhccchhcHHHHHHHHHhhhhcCCcHHHHHHH
Q 024507 81 VPKPESQEVTVVVNAVSEAPSGNNEGKTSPSSSGRMYVNRAQEVVTSVLARGSAIRQEAVNKAKAFDEKHQFTANASAKV 160 (266)
Q Consensus 81 ~~~P~~~~~~~~~~~~~~~~~~~~~~~d~p~s~~~~~~~~aq~Iva~~LA~Gyvl~d~ai~KA~~fDekhgiSs~~~~~v 160 (266)
.+||.... .. + .+.+.++++.+++++|+||++||||||+||||+|+|||+|||+||||++|+++|
T Consensus 81 ~~p~~~~~--------~~-~------~~~~~~~~~~~~~~a~~vva~mLAkGy~l~~dA~~kAk~fDekH~~ss~a~a~v 145 (260)
T PLN03120 81 QLPPEALA--------PL-S------SNSPASGAESAVKKAEDVVSSMLAKGFILGKDAVNKAKAFDEKHQLTSTASAKV 145 (260)
T ss_pred CCCccccc--------cc-c------cccCCCCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 98866421 00 0 112333445688999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcccccccchhhhhhhhhhccccccccHHHHHHHHHHHHhhhhhccccccCcccccchhhhhhHHHHHHHhhh
Q 024507 161 ISFDRRVGFTEKLTVGISVVNEKVKSVDQRLHVSDKTMAAIFAAERKINDTGSAVKTSRYVTAGTAWLNGAFSKVARAGQ 240 (266)
Q Consensus 161 ~~lD~k~g~tek~~~g~~~v~~k~k~vD~~~~vs~kt~sa~~~a~~~~~~a~sa~~~~~y~~~ga~wvs~a~~~~akaa~ 240 (266)
.+||+||||||||++|+++||+++|+||||||||+||++|+.++||+++++|+|||+||||++||+||||||+||||||.
T Consensus 146 ~~~d~k~gltek~~~g~~~v~~~~k~vDeky~vs~kt~sa~~~~~~~~~~a~sai~~~~y~~~ga~w~~~a~~~~a~aa~ 225 (260)
T PLN03120 146 ASLDKKIGLSEKLSAGTAVVNEKVKEVDQKYQVSEKTKSALAAAEQKVSSAGSAIMKNRYVLTGASWVTGAFNKVAKAAE 225 (260)
T ss_pred HhhhhhcCcccccccchHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHhhhhc
Q 024507 241 VAGTKTREKFSVAVSNL 257 (266)
Q Consensus 241 ~~~~~~~~~~~~~~~~~ 257 (266)
|+|+|++|||+++++++
T Consensus 226 ~~~~~~~~~~~~~~~~~ 242 (260)
T PLN03120 226 EVGQKTKEKVGAAEEEQ 242 (260)
T ss_pred HHhhhhHHHHhhhhhhc
Confidence 99999999999988776
No 2
>PLN03121 nucleic acid binding protein; Provisional
Probab=100.00 E-value=9.2e-77 Score=533.73 Aligned_cols=238 Identities=41% Similarity=0.542 Sum_probs=215.2
Q ss_pred CC-CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 1 MQ-QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 1 M~-~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
|+ .++||+|+||++.+||++|++||++||+|.+|+|+++++..++|||+|++++++++||+|||++|+|++|+|+++.+
T Consensus 1 m~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 1 MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCCCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 44 47899999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCCCCCCchhhhhhccccCCCCC---CCCCCCCCCCCCccccchHHHHHHHHhhccchhcHHHHHHHHHhhhhcCCcHHH
Q 024507 80 YVPKPESQEVTVVVNAVSEAPSG---NNEGKTSPSSSGRMYVNRAQEVVTSVLARGSAIRQEAVNKAKAFDEKHQFTANA 156 (266)
Q Consensus 80 ~~~~P~~~~~~~~~~~~~~~~~~---~~~~~d~p~s~~~~~~~~aq~Iva~~LA~Gyvl~d~ai~KA~~fDekhgiSs~~ 156 (266)
|.+||..- +.....+++ ...+...+.+.++.+++++|+||++||||||+||+|+|+|||+|||+||||+++
T Consensus 81 y~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~aq~Vv~tmLAkGyvLgkda~~KAkafDE~h~lss~a 154 (243)
T PLN03121 81 YEDEFDFW------NRPSWDTEDISTHNYETNQFASTPGEAVTVAQEVVKTMLAKGYVLGKDALSKAKAFDESHQVSATA 154 (243)
T ss_pred cccCcccc------cCccccccccccccccccccCCCchhhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHhh
Confidence 99988741 111111110 112222344456678999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCcccccccchhhhhhhhhhccccccccHHHHHHHHHHHHhhhhhccccccCcccccchhhhhhHHHHHH
Q 024507 157 SAKVISFDRRVGFTEKLTVGISVVNEKVKSVDQRLHVSDKTMAAIFAAERKINDTGSAVKTSRYVTAGTAWLNGAFSKVA 236 (266)
Q Consensus 157 ~~~v~~lD~k~g~tek~~~g~~~v~~k~k~vD~~~~vs~kt~sa~~~a~~~~~~a~sa~~~~~y~~~ga~wvs~a~~~~a 236 (266)
.++|.+||+|+||||||++|+ +++|+|||||||||+||||+.++||++++||||||+||||++||+||||||+|||
T Consensus 155 ~a~v~~~d~~iglt~k~~~g~----~~vk~vDeky~vs~~tksA~~aa~~~~~~a~sai~~~~Y~~~Ga~w~sga~~~~a 230 (243)
T PLN03121 155 AAKVAELSKRIGLTDKIFAGM----EAVRSVDEKYHVSEFTKSAATATGRTAAAAANAVVNSSYFSKGALWVSDALTRAA 230 (243)
T ss_pred hhhhhhhhhhccchhhhhhhH----HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhcchhhcchHHHHHHHHHHH
Confidence 999999999999999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhHH
Q 024507 237 RAGQVAGTKTRE 248 (266)
Q Consensus 237 kaa~~~~~~~~~ 248 (266)
|||.|+|+++++
T Consensus 231 kaa~~~g~~~~~ 242 (243)
T PLN03121 231 KAAADLGAHGSN 242 (243)
T ss_pred HHHHHhhccccC
Confidence 999999999875
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.59 E-value=1e-14 Score=122.70 Aligned_cols=76 Identities=17% Similarity=0.341 Sum_probs=70.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+||++.+||++|+++|+.||+|.+|+|+.+.. .++||||+|+++++|+.|| .|||..|+|+.|+|..+..
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 57899999999999999999999999999999998863 4789999999999999999 5999999999999998754
No 4
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1.1e-14 Score=104.08 Aligned_cols=67 Identities=33% Similarity=0.474 Sum_probs=62.5
Q ss_pred EEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEE
Q 024507 7 VQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVS 73 (266)
Q Consensus 7 V~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~ 73 (266)
|||+|||+.+|+++|+++|+.||+|.++.+..+. ...++|||+|+++++++.|+. |||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999863 346899999999999999996 999999999985
No 5
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=4e-14 Score=117.91 Aligned_cols=80 Identities=31% Similarity=0.342 Sum_probs=73.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
++||||+|||..++|++|.|+|+.||+|..|.|--|+. +.|||||+|-..++|+.|| -+||+.|++++|+|.....
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 58999999999999999999999999999999988873 4699999999999999999 5999999999999998877
Q ss_pred CCCC
Q 024507 80 YVPK 83 (266)
Q Consensus 80 ~~~~ 83 (266)
+.+-
T Consensus 116 F~eG 119 (153)
T KOG0121|consen 116 FVEG 119 (153)
T ss_pred chhh
Confidence 7764
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.48 E-value=1.6e-13 Score=127.24 Aligned_cols=74 Identities=19% Similarity=0.337 Sum_probs=68.8
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
++|||+|||+.+++++|+++|+.||.|++++|+.+. ..+|||||+|.++++|..|+ .|||..|+||.|+|....
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 479999999999999999999999999999999886 35799999999999999999 599999999999998754
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.46 E-value=3.6e-13 Score=97.58 Aligned_cols=67 Identities=25% Similarity=0.438 Sum_probs=59.2
Q ss_pred EEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEecChHHHHHHHH-hcCCeecCeeEE
Q 024507 7 VQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALL-LSGATIVDQIVS 73 (266)
Q Consensus 7 V~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~--~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~ 73 (266)
|+|+|||+.+++++|++||+.+|.|..|.+..++. .+++|||+|.+++.+..|+. ++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999998752 46899999999999999995 666999999874
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.44 E-value=3.6e-13 Score=124.94 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=69.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..+|||+|||+.+||++|++||+.||+|.+|+|+.+.. ..|||||+|.++++|+.|| .|||..|.|+.|.|..+.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999998862 4689999999999999999 599999999999997653
No 9
>smart00362 RRM_2 RNA recognition motif.
Probab=99.38 E-value=2.5e-12 Score=89.79 Aligned_cols=70 Identities=27% Similarity=0.404 Sum_probs=64.0
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEE
Q 024507 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~-~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~ 75 (266)
+|+|+|||+.+++++|+++|+.+|+|..+.+..+. ...++|||+|.++++++.|+ .|+|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999775 34689999999999999999 599999999999873
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.38 E-value=1.4e-12 Score=124.11 Aligned_cols=74 Identities=24% Similarity=0.366 Sum_probs=68.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
.++|||+|||+.+||++|+++|+.||+|++|+|+.+.. .++||||+|.++++|+.|| .|||..|.+++|+|..+
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 57999999999999999999999999999999998853 4689999999999999999 59999999999999865
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.34 E-value=3.8e-12 Score=122.54 Aligned_cols=74 Identities=27% Similarity=0.457 Sum_probs=69.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a 77 (266)
.++|||+|||+.+++++|++||+.||+|.+|.|+.+. ..+|+|||+|.+.++|..||.|||..|.|++|.|...
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 5799999999999999999999999999999999875 2478999999999999999999999999999999764
No 12
>PLN03213 repressor of silencing 3; Provisional
Probab=99.31 E-value=5.4e-12 Score=123.67 Aligned_cols=75 Identities=16% Similarity=0.324 Sum_probs=69.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecCh--HHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDA--KALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~--~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
..+|||+||++.+|+++|+..|+.||.|.+|+|+++.+ +|||||+|..+ .++.+|+ .|||+.+.||.|+|..+..
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 46899999999999999999999999999999997767 89999999988 6899999 6999999999999988754
No 13
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.30 E-value=2e-11 Score=85.62 Aligned_cols=70 Identities=30% Similarity=0.455 Sum_probs=64.7
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEE
Q 024507 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~--~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~ 75 (266)
+|+|+|||+.+++++|+++|+.||.|..+.+..++. ..++|||+|.+++++..|+ .+++..+.|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 589999999999999999999999999999998763 4789999999999999999 599999999999885
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.29 E-value=8.9e-12 Score=126.11 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=70.2
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..++|||+||++.++|++|+++|+.||.|.+|+|..|. .++|||||+|+++++++.|+ .|||..|+||.|+|....
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 35799999999999999999999999999999999885 35799999999999999999 599999999999998644
Q ss_pred C
Q 024507 79 N 79 (266)
Q Consensus 79 ~ 79 (266)
+
T Consensus 186 ~ 186 (612)
T TIGR01645 186 N 186 (612)
T ss_pred c
Confidence 3
No 15
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=7.7e-12 Score=117.37 Aligned_cols=76 Identities=18% Similarity=0.317 Sum_probs=70.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~-~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.+.+||+|||+...|-||+..|..+|+|.+|+|+-++ +++||+||||+++++++.|- .|+|+++.||.|.|..+.-
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4789999999999999999999999999999999765 78999999999999999998 7999999999999987743
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.27 E-value=1.3e-11 Score=122.48 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=67.8
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
.+|||+||++++||++|++||+.||.|.+|+|.+|.. ..|+|||+|.++++|+.|| .||+..|.|++|+|...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 3799999999999999999999999999999999863 4689999999999999999 69999999999999764
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.26 E-value=1.9e-11 Score=116.29 Aligned_cols=76 Identities=22% Similarity=0.306 Sum_probs=68.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecC--eeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVD--QIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g--~~I~V~~a 77 (266)
.++|||+|||+.+||++|+++|+.||+|.+++|+.+.. .+++|||+|++.++|+.|| .|||..|.+ ++|+|..+
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 36899999999999999999999999999999998852 4689999999999999999 599999976 68999877
Q ss_pred CC
Q 024507 78 EN 79 (266)
Q Consensus 78 ~~ 79 (266)
..
T Consensus 273 ~~ 274 (346)
T TIGR01659 273 EE 274 (346)
T ss_pred Cc
Confidence 64
No 18
>smart00360 RRM RNA recognition motif.
Probab=99.26 E-value=2.3e-11 Score=84.36 Aligned_cols=67 Identities=30% Similarity=0.447 Sum_probs=60.9
Q ss_pred EeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEE
Q 024507 9 VKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (266)
Q Consensus 9 V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~ 75 (266)
|+|||+.+++++|+++|+.||.|..+.+..+. ...++|||+|.+++++..|+ .|+|..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 58999999999999999999999999998874 24689999999999999999 699999999999873
No 19
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.24 E-value=3.5e-11 Score=102.18 Aligned_cols=74 Identities=24% Similarity=0.405 Sum_probs=69.5
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
++|||+||++.+|+++|+++|..||.|.+|.+..+. ..+++|||+|.+++.+..|+ .++|..|.|+.|.|....
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 799999999999999999999999999999999885 35799999999999999999 699999999999999854
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.24 E-value=3.8e-11 Score=115.64 Aligned_cols=78 Identities=23% Similarity=0.354 Sum_probs=71.4
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~~ 80 (266)
++|||+||++.+|+++|+++|+.||.|.+|.|..+.. ..++|||+|.+++.|..|+ .|||..|.|++|.|..+.+.
T Consensus 187 ~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 187 LKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 7899999999999999999999999999999998763 3689999999999999999 59999999999999998754
Q ss_pred CC
Q 024507 81 VP 82 (266)
Q Consensus 81 ~~ 82 (266)
..
T Consensus 267 ~~ 268 (457)
T TIGR01622 267 TY 268 (457)
T ss_pred Cc
Confidence 43
No 21
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.3e-11 Score=105.84 Aligned_cols=75 Identities=27% Similarity=0.381 Sum_probs=69.1
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
..+.|||+||++.+++.||...|+.+|+|.+|-|-.. +.+||||+|+|+..|+.|+ .|||..|.|..|+|+....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn--PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN--PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec--CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 3578999999999999999999999999999999874 5789999999999999999 6999999999999987643
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.23 E-value=3.9e-11 Score=121.52 Aligned_cols=75 Identities=16% Similarity=0.260 Sum_probs=69.8
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
++|||+||++.+++++|+++|+.||+|++++|.++. ..+|||||+|++.+++..|+ .|||..|+|+.|+|..+..
T Consensus 205 ~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 205 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred ceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 689999999999999999999999999999999885 25789999999999999999 6999999999999987653
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.21 E-value=6.1e-11 Score=117.78 Aligned_cols=76 Identities=20% Similarity=0.329 Sum_probs=69.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+||++.+|+++|+++|+.||.|.+|.+..+. ..+++|||+|.++++|..|+ .|||..|+|++|.|..+..
T Consensus 285 ~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 285 GVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred CCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 4689999999999999999999999999999999885 35789999999999999999 6999999999999987653
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.19 E-value=6.5e-11 Score=119.36 Aligned_cols=73 Identities=29% Similarity=0.426 Sum_probs=66.8
Q ss_pred CCCccEEEEeCCCCcccHHHHHHHcccC--CceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 1 MQQTRTVQVKNVSDLAHEREIHEFFSFS--GDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 1 M~~~~TV~V~NLs~~~Te~dL~efFs~c--G~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
|+..++|||+||++.++|++|+++|+.| |+|++|.+.+ ++|||+|++.++|+.|+ .|||..|+|+.|+|..+
T Consensus 230 ~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-----gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 230 MAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-----DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred cccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-----CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3445789999999999999999999999 9999999873 49999999999999999 59999999999999977
Q ss_pred C
Q 024507 78 E 78 (266)
Q Consensus 78 ~ 78 (266)
.
T Consensus 305 k 305 (578)
T TIGR01648 305 K 305 (578)
T ss_pred c
Confidence 4
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.19 E-value=1.1e-10 Score=113.76 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=69.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|+++|+.||.|..+.|+.+. ...|+|||+|.+++++..|+ .|||..|.|+.|.|..+..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 4789999999999999999999999999999999875 25789999999999999999 6999999999999988753
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.17 E-value=6.8e-11 Score=115.22 Aligned_cols=78 Identities=21% Similarity=0.401 Sum_probs=67.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccC------------CceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCee
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFS------------GDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQI 71 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~c------------G~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~ 71 (266)
.++|||+|||+.+|+++|++||+.| +.|..+.+..+ .+||||+|.+++.|..||.|||..|.|++
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~---kg~afVeF~~~e~A~~Al~l~g~~~~g~~ 251 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKE---KNFAFLEFRTVEEATFAMALDSIIYSNVF 251 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCC---CCEEEEEeCCHHHHhhhhcCCCeEeeCce
Confidence 5899999999999999999999864 45666666543 67999999999999999999999999999
Q ss_pred EEEEeCCCCCCCC
Q 024507 72 VSITPAENYVPKP 84 (266)
Q Consensus 72 I~V~~a~~~~~~P 84 (266)
|.|....++..+|
T Consensus 252 l~v~r~~~~~~~~ 264 (509)
T TIGR01642 252 LKIRRPHDYIPVP 264 (509)
T ss_pred eEecCccccCCcc
Confidence 9998877776544
No 27
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.15 E-value=1.2e-10 Score=114.47 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=66.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH---hcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL---LSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl---Lng~~l~g~~I~V~~a~ 78 (266)
+++|||+|||+.++|++|+++|+.||+|.+|.|+.+ +++|||+|+++++|+.|+. +|+..|.|++|.|..+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~---k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG---KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC---CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 479999999999999999999999999999999864 5799999999999999994 58999999999998764
No 28
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.15 E-value=1.9e-10 Score=113.06 Aligned_cols=74 Identities=18% Similarity=0.425 Sum_probs=68.0
Q ss_pred ccEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~-~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
+++|||+||++ .+|+++|+++|+.||.|.+|.++.+. +++|||+|.++++|..|| .|||..|.|++|.|..+..
T Consensus 275 ~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 46999999998 69999999999999999999998763 689999999999999999 5999999999999987643
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=4e-10 Score=103.86 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=68.2
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
+.+||||+||++-.||++||+.|+.+|.|..|++..+ .|+|||.|++.++|..|+ .+||++|.|+.|+...-..
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~---qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD---QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 4689999999999999999999999999999999987 569999999999999998 6999999999999876544
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.08 E-value=2.7e-10 Score=114.89 Aligned_cols=74 Identities=22% Similarity=0.308 Sum_probs=66.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHH-HhcCCeec-CeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIV-DQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tAL-lLng~~l~-g~~I~V~~a 77 (266)
.++|||+|||++++|++|+++|+.||.|.+|+|++|. .+++||||+|.++++|+.|| .|||..|. |+.|.|...
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4799999999999999999999999999999999885 35789999999999999999 69999985 777766543
No 31
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=2.9e-10 Score=100.16 Aligned_cols=78 Identities=26% Similarity=0.317 Sum_probs=72.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENYV 81 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~~~ 81 (266)
.++|||+|||+.+.|.+|.++|..+|.|..|+|....+..+||||+|+++..|+.|+. -||..++|..|+|+.....-
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 5899999999999999999999999999999998877778999999999999999995 99999999999999876554
No 32
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.05 E-value=2.5e-10 Score=101.96 Aligned_cols=76 Identities=22% Similarity=0.334 Sum_probs=70.7
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
+..++.|-||...+|.++|+..|..||.|-+|.|..|. ...|||||-|.+...|+.|| .|||.+|+|+.|.|..+.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34789999999999999999999999999999999997 46799999999999999999 699999999999998764
No 33
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=4.6e-10 Score=101.45 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=67.9
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
++|||+||+|.++.++|++||..+|+|....++.|+ .++|++||||.|.+++..|+.=-+-.|+||.-.+..+.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 579999999999999999999999999999999997 35799999999999999999999999999987776653
No 34
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.03 E-value=1.2e-09 Score=76.72 Aligned_cols=54 Identities=22% Similarity=0.418 Sum_probs=48.7
Q ss_pred HHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEe
Q 024507 21 IHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (266)
Q Consensus 21 L~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~ 76 (266)
|+++|+.||+|.+|.+..+. .++|||+|.++++|+.|+ .|||..+.|++|+|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68999999999999998664 589999999999999999 5999999999999974
No 35
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.1e-09 Score=99.68 Aligned_cols=75 Identities=28% Similarity=0.364 Sum_probs=69.9
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
|..||.|+|||.+++|.+|+++|..+|.|.+|.|.+|.+ .+|||||+|++.+.|..|+ .|||.-++.-.|+|+..
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 567899999999999999999999999999999999984 4799999999999999999 59999999999999864
No 36
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=1.7e-09 Score=87.63 Aligned_cols=74 Identities=23% Similarity=0.286 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
.+-+||.|||.++|.++..++|..+|.|..|+|-...+..|+|||.|++-.+|++|+ .|+|..+.++.+.|--+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 356999999999999999999999999999999988888999999999999999999 79999999999999754
No 37
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=2e-09 Score=100.23 Aligned_cols=72 Identities=19% Similarity=0.315 Sum_probs=67.7
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEe
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~ 76 (266)
+|+||+-|+..++|.+|+..|+.+|+|+.|.|+.+. .++|+|||+|+++-++..|- .-+|..|+|+.|.|.-
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 799999999999999999999999999999999996 36799999999999999998 6999999999999954
No 38
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.95 E-value=1.8e-09 Score=105.71 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=72.1
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~~ 80 (266)
++|||+|||+.++|++|.++|+..|.|.++++..|++ .+||+|++|.+++.++.|+ .|||.++.||+|+|..+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7999999999999999999999999999999999873 5799999999999999999 59999999999999887654
Q ss_pred CC
Q 024507 81 VP 82 (266)
Q Consensus 81 ~~ 82 (266)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 39
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=3.3e-10 Score=99.43 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=74.5
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
|+.-|||+|||...||.||--.||.+|+|.+|.|++|.+ +.||||..|+|..+---|+ -|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 456799999999999999999999999999999999973 5799999999998876677 699999999999999999
Q ss_pred CCCCCC
Q 024507 79 NYVPKP 84 (266)
Q Consensus 79 ~~~~~P 84 (266)
+|..|-
T Consensus 114 ~Yk~pk 119 (219)
T KOG0126|consen 114 NYKKPK 119 (219)
T ss_pred cccCCc
Confidence 888774
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.91 E-value=1.7e-09 Score=94.81 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=70.9
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
...||||+||++.++++-|.|+|-+||+|.+|.|+.|.. ..||||++|.+++.++=|+ .||+-.|-|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 357999999999999999999999999999999999872 5799999999999999999 699999999999999876
No 41
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=4.1e-09 Score=101.32 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=69.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~-~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
|.+.|||.||++.++.++|.++|+.+|+|.+|.+..+. +.+++ ||.|+++++|.+|+ +|||..+.|+.|.|.+...
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 45669999999999999999999999999999999887 56677 99999999999999 7999999999999977654
No 42
>smart00361 RRM_1 RNA recognition motif.
Probab=98.89 E-value=5.8e-09 Score=76.89 Aligned_cols=58 Identities=19% Similarity=0.378 Sum_probs=50.3
Q ss_pred HHHHHHHcc----cCCceeEEE-EEecC-----CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEE
Q 024507 18 EREIHEFFS----FSGDIERIE-ILREY-----GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (266)
Q Consensus 18 e~dL~efFs----~cG~I~~I~-l~~d~-----~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~ 75 (266)
+++|+++|+ .+|.|.+|. +..+. .++|++||+|+++++|..|+ .|||..++|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 689999999 999999996 55443 34789999999999999999 699999999999863
No 43
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=2.2e-09 Score=90.53 Aligned_cols=73 Identities=27% Similarity=0.366 Sum_probs=68.0
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
.-|||+||-+.+||++|.+.|..+|+|+.|.|-.|+. .+|+|.|+|+....|+.|+ .|||+.|.|++|.|..|
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 4689999999999999999999999999999988763 3789999999999999999 69999999999999886
No 44
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.84 E-value=4.5e-09 Score=95.30 Aligned_cols=80 Identities=24% Similarity=0.276 Sum_probs=73.0
Q ss_pred CCCccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeC
Q 024507 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (266)
Q Consensus 1 M~~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a 77 (266)
|.+.+.|||+|+.+.+|.+++...|+.||.|..|.|+.+.. .++||||+|.+.+.++.+|.|||..|.|+.|.|++.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 34678999999999999999999999999999999998873 478999999999999999999999999999999887
Q ss_pred CCC
Q 024507 78 ENY 80 (266)
Q Consensus 78 ~~~ 80 (266)
..-
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 543
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=6.6e-09 Score=101.01 Aligned_cols=74 Identities=23% Similarity=0.395 Sum_probs=68.5
Q ss_pred CCCccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 1 M~~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
|+.-.-+||.||+.++||+.|++.|+.+|+|++|..++| +|||.|.+.+++-.|+ .+||.+|+|..|.|+.+..
T Consensus 256 ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 256 MSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred hhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 555677999999999999999999999999999999977 9999999999999999 5999999999999998753
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.81 E-value=9e-09 Score=100.93 Aligned_cols=77 Identities=29% Similarity=0.377 Sum_probs=69.8
Q ss_pred CCCccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 1 M~~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~-~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
|....-|.+.+|||+||++||++||+.|+ |+++.+.+.. .+++-|||+|+++++++.||.+|-..+..|.|.|-.+.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 34566799999999999999999999995 9999999885 56899999999999999999999999999999997764
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=7e-09 Score=99.14 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=69.3
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
+.|||+.|++...|+.||.-|..+|.|++|.|.-|+ ..++||||+|+=|+++.-|| .+||..|+||.|+|-+..+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 689999999999999999999999999999998776 35799999999999999999 5999999999999986544
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=1.3e-08 Score=101.06 Aligned_cols=78 Identities=23% Similarity=0.394 Sum_probs=71.7
Q ss_pred CCCc-cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEE
Q 024507 1 MQQT-RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (266)
Q Consensus 1 M~~~-~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~ 75 (266)
|++. .|+||++||++++.++|.+|||..|+|.++-++.+.+ .+||+||+|.=.+.++.|+ ++++..+.|+.|+|.
T Consensus 1 ~n~~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~ 80 (678)
T KOG0127|consen 1 ENKSGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVD 80 (678)
T ss_pred CCCCCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccc
Confidence 4543 8999999999999999999999999999999999875 4799999999999999999 699999999999998
Q ss_pred eCC
Q 024507 76 PAE 78 (266)
Q Consensus 76 ~a~ 78 (266)
++.
T Consensus 81 ~A~ 83 (678)
T KOG0127|consen 81 PAK 83 (678)
T ss_pred ccc
Confidence 874
No 49
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.73 E-value=2.6e-08 Score=97.01 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=69.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcc-cCCceeEEEEEecC--CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFS-FSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs-~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.|.||++|||+.+.+.+|+++|. ..|+|++|+|+.|. ..+++|.|+|++++.+++|+ .||...+.||+|.|....+
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 36799999999999999999996 68999999999987 35789999999999999999 5999999999999987655
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=3.5e-08 Score=98.08 Aligned_cols=75 Identities=28% Similarity=0.367 Sum_probs=67.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHHhc------C-CeecCeeEE
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLS------G-ATIVDQIVS 73 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALlLn------g-~~l~g~~I~ 73 (266)
+.||||.|||+.+||++|.+.|+.+|+|.++.|+.++. +.|+|||.|.++.++..+|..- | -.|+||.|.
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 58999999999999999999999999999999998873 5799999999999999999643 3 568999999
Q ss_pred EEeCC
Q 024507 74 ITPAE 78 (266)
Q Consensus 74 V~~a~ 78 (266)
|+++-
T Consensus 372 v~~Av 376 (678)
T KOG0127|consen 372 VTLAV 376 (678)
T ss_pred eeecc
Confidence 99874
No 51
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.2e-08 Score=92.04 Aligned_cols=75 Identities=25% Similarity=0.418 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.||+||++|...++|.-|..-|-.+|.|..|.|+.|.+ .++|+||+|+..+.|..|+ -+|+.+|-||.|+|..+.
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 58999999999999999999999999999999998873 5799999999999999999 699999999999997653
No 52
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=4e-08 Score=95.65 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=66.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeec-CeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIV-DQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~-g~~I~V~~a 77 (266)
++-|||+.||.++.|++|.-||...|+|-.++|++|+ ..+|+|||+|.+.+.|+.|+ +||+.+|. |+.|.|+-.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 5789999999999999999999999999999999995 36899999999999999999 79999884 677776543
No 53
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.68 E-value=2e-08 Score=96.57 Aligned_cols=79 Identities=24% Similarity=0.413 Sum_probs=71.3
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC------CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG------QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~------~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
.-|+|.||+|++|.++++.+|.++|+|..+.|....+ ...+|||-|.|+..+..|.+|.++.+.|+.|.|.|+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 4799999999999999999999999999999987532 3689999999999999999999999999999999977
Q ss_pred CCCCC
Q 024507 79 NYVPK 83 (266)
Q Consensus 79 ~~~~~ 83 (266)
+...|
T Consensus 88 ~~~~p 92 (479)
T KOG4676|consen 88 DEVIP 92 (479)
T ss_pred CCCCc
Confidence 65544
No 54
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=1.5e-07 Score=86.95 Aligned_cols=74 Identities=20% Similarity=0.351 Sum_probs=68.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
+.+|||=||+|++.|.-|+++|+.+|.|.+|.+++|-. -+||+||+..+-++|..|+ .|||..|++|.|.|+-.
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 57899999999999999999999999999999999973 4689999999999999998 59999999999999864
No 55
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=2e-07 Score=88.40 Aligned_cols=70 Identities=29% Similarity=0.348 Sum_probs=64.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH--HhcCCeecCeeEEEEe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL--LLSGATIVDQIVSITP 76 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL--lLng~~l~g~~I~V~~ 76 (266)
.+|+||+||-+.++|.+|+++|-.||+|.+|.+... .+.|||+|.+..+++.|. .+|...|+|+.|+|..
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 479999999999999999999999999999999865 459999999999999987 5999999999999984
No 56
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=2.4e-07 Score=89.26 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=65.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++||+ |.+||..|.++|+..|++.+|++++|-.+-|+|||.|.++..++.|| .||...|.|++|+|.+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc
Confidence 368888 99999999999999999999999999844589999999999999999 699999999999997653
No 57
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.49 E-value=1.8e-07 Score=87.27 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=66.3
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~~ 80 (266)
-.+||+|||..+++.+|+.+|..+|+|..++|+.+ ++||..++..+++-|+. |+|.+|+|..|.|+...+-
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47899999999999999999999999999999944 89999999999999996 9999999999999987654
No 58
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.48 E-value=4e-07 Score=84.07 Aligned_cols=74 Identities=22% Similarity=0.397 Sum_probs=67.8
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--C-CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--G-QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~-~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
+.+.|-=||.+.|+++||-+|+..|+|+++.|++|+ + +-|++||.|-+|++|+.|+ .|||-.|..+.|+|+-+.
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 458888899999999999999999999999999997 3 4589999999999999999 699999999999998653
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.47 E-value=2.3e-07 Score=90.55 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=63.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~ 76 (266)
.++|+|.|||.++|++-|++-|..||.|.+.+|....... ..|.|.+|+.|+.|+ ++||..|+||.|.|+.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gksk--GVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSK--GVVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCcc--ceEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4789999999999999999999999999999995443333 399999999999999 7999999999999974
No 60
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.4e-07 Score=88.38 Aligned_cols=73 Identities=19% Similarity=0.326 Sum_probs=67.6
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
..+||.-|.|-+|.++|.-.||.+|+|.++++++|.. .-++|||+|++.++.+.|. .+++..|+++.|+|.-.
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 5789999999999999999999999999999999973 4589999999999999997 79999999999999644
No 61
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.44 E-value=3.7e-07 Score=89.21 Aligned_cols=76 Identities=25% Similarity=0.249 Sum_probs=67.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--C-CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--G-QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~-~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
..+|||.|||+++++.+|+++|..+|.|+...|.... + ..+|+||+|++.++++.|++-+--.|+++.+.|.....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 4679999999999999999999999999999998643 2 23899999999999999999998889999999986543
No 62
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.44 E-value=2.8e-07 Score=91.46 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=70.3
Q ss_pred EEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCCCCC
Q 024507 7 VQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENYVP 82 (266)
Q Consensus 7 V~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~~~~ 82 (266)
+||+||-++.+|++|+..|..+|+|+.|.+..|. ..+||+||+|.+.+.+..|+ .|||-+|-|+.|+|....+-..
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 8999999999999999999999999999999985 35799999999999999997 6999999999999988766555
Q ss_pred C
Q 024507 83 K 83 (266)
Q Consensus 83 ~ 83 (266)
.
T Consensus 361 ~ 361 (549)
T KOG0147|consen 361 T 361 (549)
T ss_pred c
Confidence 4
No 63
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=5e-07 Score=91.95 Aligned_cols=72 Identities=24% Similarity=0.348 Sum_probs=66.6
Q ss_pred EEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC------CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 7 VQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG------QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 7 V~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~------~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
+||+||++.+|.++|...|+..|.|.++.|...+. +.||+||+|.+++.|..|+ .|+|+.|+|+.|.|..+.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999999999999999999999999999986653 3599999999999999999 699999999999998876
No 64
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=4.6e-07 Score=83.90 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=66.9
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
-|+|+.|++.++-++||+-|..+|+|.+.++++|. .++|++||.|-+.+.|+.|+ .+||.=|++|.|+-..+
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 58999999999999999999999999999999997 35799999999999999999 69999999999997544
No 65
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.41 E-value=7.1e-07 Score=80.34 Aligned_cols=76 Identities=26% Similarity=0.370 Sum_probs=70.2
Q ss_pred ccEEEEeCCCCcccHHHHHH----HcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHE----FFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~e----fFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..|+||.||...+..++|+. +||.+|+|..|....-..-+|-|||.|.+.+++..|+ .|+|-.+-|.+++|..+.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 45999999999999999998 9999999999999877777899999999999999999 699999999999998775
Q ss_pred C
Q 024507 79 N 79 (266)
Q Consensus 79 ~ 79 (266)
.
T Consensus 89 s 89 (221)
T KOG4206|consen 89 S 89 (221)
T ss_pred C
Confidence 4
No 66
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.40 E-value=2.7e-07 Score=87.11 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=70.5
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
+.++++|++|+|.++++.|+++|+.+|+|..+.+.+|. ..++|.||+|.+++.+..+|...-..|+|+.|.+.++-.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 56899999999999999999999999999999999987 357899999999999999999999999999999887644
No 67
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=2.7e-07 Score=89.76 Aligned_cols=76 Identities=29% Similarity=0.357 Sum_probs=66.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEecChHHHHHHH-HhcCCe-ecCe--eEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGAT-IVDQ--IVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~--~~~~AyVtF~~~~aa~tAL-lLng~~-l~g~--~I~V~~a 77 (266)
.+.+||+-|+..+||.+|++.|+.+|.|++|.|.++.. .+|+|||+|...+-|..|+ .|||+. +.|. +|.|.-+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 57889999999999999999999999999999999873 5899999999999999999 599964 5554 7888765
Q ss_pred CC
Q 024507 78 EN 79 (266)
Q Consensus 78 ~~ 79 (266)
+.
T Consensus 204 Dt 205 (510)
T KOG0144|consen 204 DT 205 (510)
T ss_pred cc
Confidence 43
No 68
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.38 E-value=8.9e-07 Score=84.13 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=66.4
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeE--------EEEEecC-C-CCcEEEEEecChHHHHHHH-HhcCCeecCeeEE
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIER--------IEILREY-G-QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVS 73 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~--------I~l~~d~-~-~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~ 73 (266)
..|||+|||+.+|-+++.++|+.||-|.+ |.|.++. + .+|-|.+.|-..++++-|+ +||+..|.|+.|+
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~r 214 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLR 214 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEE
Confidence 46999999999999999999999998864 7787776 3 4789999999999999999 7999999999999
Q ss_pred EEeCC
Q 024507 74 ITPAE 78 (266)
Q Consensus 74 V~~a~ 78 (266)
|..+.
T Consensus 215 VerAk 219 (382)
T KOG1548|consen 215 VERAK 219 (382)
T ss_pred Eehhh
Confidence 99873
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.31 E-value=1.3e-06 Score=89.83 Aligned_cols=77 Identities=26% Similarity=0.370 Sum_probs=70.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCCCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENYVP 82 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~~~~ 82 (266)
++|+||++|+.+++|.||+..|..||+|++|.|... .++|||+...-++|+.|| .|++..+.++.|+|..+-+.-.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~---R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP---RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC---CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 489999999999999999999999999999999854 679999999999999999 6999999999999988766544
Q ss_pred C
Q 024507 83 K 83 (266)
Q Consensus 83 ~ 83 (266)
.
T Consensus 498 k 498 (894)
T KOG0132|consen 498 K 498 (894)
T ss_pred c
Confidence 3
No 70
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.29 E-value=2.7e-07 Score=83.29 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=71.5
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~-~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~~ 80 (266)
+.+|++|.|+...++|+-|.|+|-..|.|..|.|..+.. ..+||||.|+++-++.-|+ |+||-.|-+++|.|++-.+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 458999999999999999999999999999999987763 3469999999999999999 89999999999999876554
Q ss_pred CCC
Q 024507 81 VPK 83 (266)
Q Consensus 81 ~~~ 83 (266)
.-.
T Consensus 88 sha 90 (267)
T KOG4454|consen 88 SHA 90 (267)
T ss_pred Ccc
Confidence 333
No 71
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.29 E-value=9.8e-07 Score=83.34 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=70.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
.+.|||++||+.++|++++++|..+|.|..+.+..|.. ..+|+||+|.++++++.++...-+.|.|+.+.|..+..
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 35899999999999999999999999999999998873 57899999999999999999999999999999988753
No 72
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.25 E-value=9.1e-07 Score=82.63 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=64.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..+++|+||++.++..+||+.|..+|.+..++|..+ ++||.|.-.+.+..|+ -|||+++.|++++|....
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----eeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 357999999999999999999999999999999855 9999999999999999 599999999999997653
No 73
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.21 E-value=2.5e-06 Score=83.14 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=64.3
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH--HhcCCeecCe--eEEEEeC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL--LLSGATIVDQ--IVSITPA 77 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL--lLng~~l~g~--~I~V~~a 77 (266)
-.+||+-||..++|.|||++|..+|.|..|.|++|+ .+.++|||+|.+.+++..|+ +-|-.+|-|- +|.|.++
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 468999999999999999999999999999999997 35799999999999999998 4555677665 6777766
Q ss_pred C
Q 024507 78 E 78 (266)
Q Consensus 78 ~ 78 (266)
+
T Consensus 115 d 115 (510)
T KOG0144|consen 115 D 115 (510)
T ss_pred c
Confidence 4
No 74
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.19 E-value=5.3e-07 Score=89.58 Aligned_cols=75 Identities=25% Similarity=0.461 Sum_probs=69.3
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a 77 (266)
+.+||++--|+-..++.+|.+||+..|+|..|+|+.|.. .++.|||+|-|.+++.-|+.|+|..+.|.+|.|.+.
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS 255 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc
Confidence 457899999999999999999999999999999999973 478999999999999999999999999999999653
No 75
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.16 E-value=5.4e-06 Score=75.94 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=67.7
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.+|+|+||+..++++||+|+|..+|.++.+-+-.++ .+.|+|-|.|...+.|..|+ .|||..|+|+++.+.....
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 579999999999999999999999999999998876 35799999999999999999 6999999999988876543
No 76
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.08 E-value=4.5e-06 Score=73.56 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=63.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE-EEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER-IEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~-I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
+..+||+||.|.++|.-|.+.||.+|.|.+ =++.+++ .+.+++||.|.+.++...|+ .+||..+..++|+|+-+
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 357899999999999999999999998765 3445544 35679999999999999999 69999999999999865
No 77
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.06 E-value=7.7e-06 Score=82.20 Aligned_cols=77 Identities=18% Similarity=0.310 Sum_probs=70.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
++.++|++|+..+.-.+|+.+||.+|+|.-..++.+. +..+|+|||+.....|..++ .|+-++|.|+.|.|..+.+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 5789999999999999999999999999999998764 56799999999999999999 6999999999999998866
Q ss_pred C
Q 024507 80 Y 80 (266)
Q Consensus 80 ~ 80 (266)
-
T Consensus 485 E 485 (940)
T KOG4661|consen 485 E 485 (940)
T ss_pred C
Confidence 3
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.97 E-value=6.4e-06 Score=74.25 Aligned_cols=69 Identities=23% Similarity=0.377 Sum_probs=63.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..|||++|++.+.+++|.+||..+|+|.++.|. .+|+||+|+|+.+|+-|+ -|||..|.|-.+.|..+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 469999999999999999999999999999996 678999999999999999 599999999997776654
No 79
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.97 E-value=6.7e-06 Score=83.90 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=67.9
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
+.|+|.|||+.++-++|+++|+.+|.|.+|+|+...+ ..|||||+|-.+..+..|+ .|.++.|-||.|.+..+.+
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 5799999999999999999999999999999997732 4799999999999999999 6889999999999887654
No 80
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.97 E-value=1.6e-05 Score=76.51 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=67.9
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..|||..+.|+.+|+||+..|.-+|+|.+|.|-+++ +.+||+|++|.+.++-..|+ -+|=-.|+|+.|+|-.+-
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 479999999999999999999999999999999886 46899999999999999999 599999999999997653
No 81
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.90 E-value=2.5e-05 Score=55.40 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=44.3
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL 60 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL 60 (266)
+.|-|++.++...+ +|..+|..||+|.++.+. ......||.|++..+++.||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 67999999988774 556688899999999987 23669999999999999986
No 82
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.86 E-value=3.4e-05 Score=62.01 Aligned_cols=68 Identities=24% Similarity=0.376 Sum_probs=42.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCC-----eecCeeEEEE
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGA-----TIVDQIVSIT 75 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~-----~l~g~~I~V~ 75 (266)
.-|++.|++..++-++|++.|+.+|+|.+|.+... ...|||-|.++++|+.|+. +... .|.+..++++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 56899999999999999999999999999999854 4589999999999999883 4333 4455554444
No 83
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.85 E-value=3.9e-05 Score=68.61 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=62.5
Q ss_pred EEEEeCCCCcccHHHHHHHcccC-CceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEe
Q 024507 6 TVQVKNVSDLAHEREIHEFFSFS-GDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~c-G~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~ 76 (266)
-++|..|+..+-|.+|..||..+ |.+..++|.++. ++++||||+|++++-|+-|- .|||..|.++.|.+.-
T Consensus 51 ~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 51 VVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred ceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 47899999999999999998765 899999997775 36799999999999999887 6999999999888753
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=1.1e-05 Score=80.60 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=62.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEE
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVS 73 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~ 73 (266)
.+++.|.||++.+++++|++.|+-+|+|..|++.+. ..+..||+|-|-..|++|| .||+..|.|+.|.
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~--~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN--KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc--cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 479999999999999999999999999999777654 4689999999999999999 6999999999988
No 85
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.78 E-value=1.7e-05 Score=75.55 Aligned_cols=76 Identities=25% Similarity=0.380 Sum_probs=66.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE--------EEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCee
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER--------IEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQI 71 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~--------I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~ 71 (266)
.-||||.+|+.++++++|-+||..||.|+. |.|..+.+ .++-|.|+|+|+.+++.|+ .+++..+.++.
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 468999999999999999999999999964 55555542 5789999999999999998 59999999999
Q ss_pred EEEEeCCC
Q 024507 72 VSITPAEN 79 (266)
Q Consensus 72 I~V~~a~~ 79 (266)
|+|..+..
T Consensus 146 ikvs~a~~ 153 (351)
T KOG1995|consen 146 IKVSLAER 153 (351)
T ss_pred chhhhhhh
Confidence 99987754
No 86
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.76 E-value=2.9e-05 Score=72.18 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=68.7
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEe
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~ 76 (266)
+++.+||-.||....+.||-+.|-.+|.|.+-++..|+ .+++|+||.|.++.++.+|+ .+||-.|+=++|+|..
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 57899999999999999999999999999999999887 35789999999999999999 6999999999998865
No 87
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.76 E-value=0.00011 Score=66.92 Aligned_cols=76 Identities=22% Similarity=0.216 Sum_probs=61.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--C--CCcEEEEEecChHHHHHHH-HhcCCeec---CeeEEEE
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--G--QSKTAFVTFKDAKALEIAL-LLSGATIV---DQIVSIT 75 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~--~~~~AyVtF~~~~aa~tAL-lLng~~l~---g~~I~V~ 75 (266)
-||+||++||.++..++|..+|..|---+...|.... + .+.+|||+|.+.+.|..|+ .|||..++ ++.|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 4899999999999999999999877545555554332 2 3579999999999999999 69999997 5678887
Q ss_pred eCCC
Q 024507 76 PAEN 79 (266)
Q Consensus 76 ~a~~ 79 (266)
.+..
T Consensus 114 lAKS 117 (284)
T KOG1457|consen 114 LAKS 117 (284)
T ss_pred ehhc
Confidence 7653
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.76 E-value=4.9e-05 Score=75.12 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=61.6
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeE-EEEEecC--CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIER-IEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~-I~l~~d~--~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a 77 (266)
-.|...+||+.||++||.+||+-.=-+.. |-|+.+. ..++-|||.|++++.++.||..+...|+-|-|.|-++
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 46899999999999999999997633333 4555555 3578999999999999999999999999999999665
No 89
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.69 E-value=0.00023 Score=57.05 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=52.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEE-EEec---------CCCCcEEEEEecChHHHHHHHHhcCCeecCeeEE
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIE-ILRE---------YGQSKTAFVTFKDAKALEIALLLSGATIVDQIVS 73 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~-l~~d---------~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~ 73 (266)
.+.|.|-+.|+.. -..|-++|+.||+|.+.. +.++ ......-.|+|.++.+|..||..||..|.|.-+-
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 4679999999985 567888899999997764 1111 1235689999999999999999999999998655
Q ss_pred -EEeC
Q 024507 74 -ITPA 77 (266)
Q Consensus 74 -V~~a 77 (266)
|.++
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 4443
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.61 E-value=0.00027 Score=55.43 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=46.7
Q ss_pred cEEEEeCCCCcccHHHH----HHHcccCC-ceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 5 RTVQVKNVSDLAHEREI----HEFFSFSG-DIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL----~efFs~cG-~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
..++|.|||.+.+...| +.++..|| +|.+|. .+.|+|.|.+++.|..|+ .|+|...-|+.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 46899999998877665 56777897 676662 579999999999999999 59999999999999864
No 91
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.57 E-value=7.7e-05 Score=69.47 Aligned_cols=64 Identities=25% Similarity=0.397 Sum_probs=57.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHH-HhcCCe
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGAT 66 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tAL-lLng~~ 66 (266)
+.|.+||+=|...-+|+|++.+|+.+|.|+++.+.+.. ..+|+|||.|.+.-++..|+ .|+|..
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSq 84 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQ 84 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccc
Confidence 35789999999999999999999999999999999865 36799999999999999999 588854
No 92
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.34 E-value=0.00014 Score=65.62 Aligned_cols=65 Identities=22% Similarity=0.379 Sum_probs=59.6
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEE
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSI 74 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V 74 (266)
+.+.|.|++..+.+.+|.++|++.|.+....+ ..++++|.|+..+++..|+ +|+|..|.++.|++
T Consensus 100 ~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 100 FRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ceeeeccchhhhhHHHHhhhhcccCCCchhhh-----hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 67899999999999999999999999966655 2569999999999999999 79999999999999
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.19 E-value=0.00021 Score=66.82 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=62.3
Q ss_pred cEEE-EeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEe
Q 024507 5 RTVQ-VKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITP 76 (266)
Q Consensus 5 ~TV~-V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~ 76 (266)
.+++ |+|++..+++++|+++|.+||.|..+++..++. ..+++||.|.+......++.-....+.++++.+..
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEE 260 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCccccccc
Confidence 4677 999999999999999999999999999998874 46899999998887777775567888888888865
No 94
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.09 E-value=0.00048 Score=62.84 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=50.1
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCee
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATI 67 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l 67 (266)
.|+||-||+++|||++|+.+|+.+---..++|... +....||++|++.+-+..|+ .|.|-.|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 48999999999999999999996644555555433 44789999999999998888 6887665
No 95
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.02 E-value=0.0049 Score=49.20 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=55.3
Q ss_pred cEEEEeCCCCcccHHHHHHHcc--cCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeec
Q 024507 5 RTVQVKNVSDLAHEREIHEFFS--FSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIV 68 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs--~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~ 68 (266)
+||-+.|||...|.++|.+.+. +.|...-+-|+.|-. ..|+|||.|.+++.+..-. .++|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 6899999999999999998885 458899999988853 4699999999999999866 69998875
No 96
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.96 E-value=0.00034 Score=64.59 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=56.8
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCC---------------CcEEEEEecChHHHHH-HHHhcCCeecC
Q 024507 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQ---------------SKTAFVTFKDAKALEI-ALLLSGATIVD 69 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~---------------~~~AyVtF~~~~aa~t-ALlLng~~l~g 69 (266)
-||++||||......||++|+++|.|-+|-|.++... ..-+.|+|.+..-|+. |.+|||..|+|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 5999999999999999999999999999999986521 1247799999888877 55899999999
Q ss_pred ee
Q 024507 70 QI 71 (266)
Q Consensus 70 ~~ 71 (266)
+.
T Consensus 156 kk 157 (278)
T KOG3152|consen 156 KK 157 (278)
T ss_pred CC
Confidence 85
No 97
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.96 E-value=0.0034 Score=61.42 Aligned_cols=72 Identities=19% Similarity=0.413 Sum_probs=65.2
Q ss_pred cEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 5 RTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 5 ~TV~V~NLs~-~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..+-|+||.+ .+|++-|..+|+-+|+|.+|.|...+ +--|.|.+.|+.-|+-|+ .|+|..|-|+.|+|+...
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 5788999986 78999999999999999999999875 357999999999999999 699999999999998764
No 98
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.95 E-value=0.0015 Score=62.60 Aligned_cols=72 Identities=17% Similarity=0.360 Sum_probs=59.0
Q ss_pred cEEEEeCCCCcccHHHH------HHHcccCCceeEEEEEecC---C-CCcE--EEEEecChHHHHHHH-HhcCCeecCee
Q 024507 5 RTVQVKNVSDLAHEREI------HEFFSFSGDIERIEILREY---G-QSKT--AFVTFKDAKALEIAL-LLSGATIVDQI 71 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL------~efFs~cG~I~~I~l~~d~---~-~~~~--AyVtF~~~~aa~tAL-lLng~~l~g~~ 71 (266)
.-|||-+|+|.+-.+++ .+||..+|+|..|-+-+.. + ..+- .||+|...++|.+++ ..+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 34899999999877772 4999999999999886543 1 1232 499999999999999 69999999999
Q ss_pred EEEEe
Q 024507 72 VSITP 76 (266)
Q Consensus 72 I~V~~ 76 (266)
|+-+-
T Consensus 195 lkatY 199 (480)
T COG5175 195 LKATY 199 (480)
T ss_pred Eeeec
Confidence 98753
No 99
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.94 E-value=0.002 Score=66.52 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=63.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---C---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---G---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~ 76 (266)
.+.+||+||+|+++|+.|..-|..+|+|-+|+|.--+ + ..-++||-|-+-..++.|| .|+|..+.+..+++-.
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 4679999999999999999999999999999997432 1 3468999999999999999 5999999888877754
Q ss_pred C
Q 024507 77 A 77 (266)
Q Consensus 77 a 77 (266)
.
T Consensus 254 g 254 (877)
T KOG0151|consen 254 G 254 (877)
T ss_pred c
Confidence 4
No 100
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.71 E-value=0.0065 Score=51.92 Aligned_cols=69 Identities=25% Similarity=0.331 Sum_probs=53.0
Q ss_pred cEEEEeCCCC------cccH---HHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEE
Q 024507 5 RTVQVKNVSD------LAHE---REIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSIT 75 (266)
Q Consensus 5 ~TV~V~NLs~------~~Te---~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~ 75 (266)
.||.|+=.++ ...+ .+|.+.|+.+|++.=|++..+ .-.|||.+-++|-+||.|||.++.|+.|+|+
T Consensus 28 aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-----~mwVTF~dg~sALaals~dg~~v~g~~l~i~ 102 (146)
T PF08952_consen 28 ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-----TMWVTFRDGQSALAALSLDGIQVNGRTLKIR 102 (146)
T ss_dssp -EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-----CEEEEESSCHHHHHHHHGCCSEETTEEEEEE
T ss_pred ceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-----eEEEEECccHHHHHHHccCCcEECCEEEEEE
Confidence 4777776662 2221 367788999999998888743 6899999999999999999999999999998
Q ss_pred eCC
Q 024507 76 PAE 78 (266)
Q Consensus 76 ~a~ 78 (266)
...
T Consensus 103 LKt 105 (146)
T PF08952_consen 103 LKT 105 (146)
T ss_dssp E--
T ss_pred eCC
Confidence 753
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.56 E-value=0.0066 Score=62.78 Aligned_cols=71 Identities=24% Similarity=0.263 Sum_probs=61.4
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCce-eEEEEEecC--CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEE
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDI-ERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I-~~I~l~~d~--~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~ 75 (266)
+.|.+.|+|++++-+||.+||+.+-.+ .+|.+...+ ..+|-|-|.|++++.|..|. -|++..|..|.|.+.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 468899999999999999999988654 467777655 35899999999999999998 499999999998875
No 102
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.27 E-value=0.0036 Score=61.48 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=53.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---C-------------CCcEEEEEecChHHHHHHHHhcCCe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---G-------------QSKTAFVTFKDAKALEIALLLSGAT 66 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~-------------~~~~AyVtF~~~~aa~tALlLng~~ 66 (266)
.+||.+-|||.+-.-+.|.++|+.||.|++|+|+.-+ + ..-.|+|+|+.-++|.+|..|++..
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 4899999999999999999999999999999998651 1 1237999999999999999766543
No 103
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.22 E-value=0.0044 Score=62.13 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=68.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
...++|+||+...++.+++|...-+|.+...++..+.. .+++||-+|.++.--..|+ -|||..++|..|.|..+-
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 46799999999999999999999999999999998863 5799999999999999999 599999999999998763
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.04 E-value=0.026 Score=51.18 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=60.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeec-CeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIV-DQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~-g~~I~V~~a 77 (266)
..+.++.|||..++.+.+..+|..|.--+.|+++.. .++.|||+|.+...+..|. .|.|..|- ...+.|+.+
T Consensus 146 n~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~--~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 146 NNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP--RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred ceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC--CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 468999999999999999999998887899999864 3679999999988888887 58888876 667777643
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.027 Score=56.40 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=53.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC------CCc---EEEEEecChHHHHHHH---HhcC-------
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG------QSK---TAFVTFKDAKALEIAL---LLSG------- 64 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~------~~~---~AyVtF~~~~aa~tAL---lLng------- 64 (266)
.+.|||++||+..+|+.|..+|..||.+ .|+-....+ +.| ++|..|+++.++..-| ..+.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 4689999999999999999999999984 455553221 245 9999999998887644 2221
Q ss_pred --CeecCeeEEEEeCC
Q 024507 65 --ATIVDQIVSITPAE 78 (266)
Q Consensus 65 --~~l~g~~I~V~~a~ 78 (266)
.++.++.|.|.||-
T Consensus 338 ss~~~k~k~VQIrPW~ 353 (520)
T KOG0129|consen 338 SSPTIKDKEVQIRPWV 353 (520)
T ss_pred ecCcccccceeEEeeE
Confidence 23455556666663
No 106
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.71 E-value=0.022 Score=55.89 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=57.7
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCce-eEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCe-eEEEEe
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDI-ERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQ-IVSITP 76 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I-~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~-~I~V~~ 76 (266)
.|++.+|||++++|++|++.|..-|-. +-..... +.++.|++.+++.+.+-.|| .+.+..+++. .++|+-
T Consensus 415 atlHlsnip~svsee~lk~~f~~~g~~vkafkff~--kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 415 ATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ--KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred hheeeccCCcccchhHHHHhhhcCCceEEeeeecC--CCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 589999999999999999999887754 4444432 23689999999999999998 6999999887 788864
No 107
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.64 E-value=0.069 Score=51.45 Aligned_cols=76 Identities=13% Similarity=0.228 Sum_probs=61.3
Q ss_pred CccEEEEeCCCC----ccc-------HHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCe
Q 024507 3 QTRTVQVKNVSD----LAH-------EREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQ 70 (266)
Q Consensus 3 ~~~TV~V~NLs~----~~T-------e~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~ 70 (266)
..+||.+.|+=. ..+ +++|++==+.||.|.+|.+... .+-|.+.|.|.+++.|..++ .|+|..++||
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~-hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgR 342 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR-HPDGVVTVSFRNNEEADQCIQTMDGRWFDGR 342 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc-CCCceeEEEeCChHHHHHHHHHhcCeeecce
Confidence 468999999843 334 3445555678999999988633 45789999999999999999 7999999999
Q ss_pred eEEEEeCCC
Q 024507 71 IVSITPAEN 79 (266)
Q Consensus 71 ~I~V~~a~~ 79 (266)
.|+-..+.+
T Consensus 343 ql~A~i~DG 351 (382)
T KOG1548|consen 343 QLTASIWDG 351 (382)
T ss_pred EEEEEEeCC
Confidence 999888755
No 108
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.51 E-value=0.017 Score=56.45 Aligned_cols=71 Identities=20% Similarity=0.245 Sum_probs=57.9
Q ss_pred EEEEeCCCCcccHHHHHHHcc-cC---CceeEEEEEec--CCCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEe
Q 024507 6 TVQVKNVSDLAHEREIHEFFS-FS---GDIERIEILRE--YGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITP 76 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs-~c---G~I~~I~l~~d--~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~ 76 (266)
-|...+||+++++.|+.+||. .| |..+.|-++.. +..+|-|||.|..++.++.||..+...|+-|.|.+-+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 366779999999999999996 23 34566666654 3468999999999999999999999999988887643
No 109
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.50 E-value=0.0015 Score=68.43 Aligned_cols=71 Identities=25% Similarity=0.342 Sum_probs=56.7
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEE--ecC-CCCcEEEEEecChHHHHHHHHhcCCeecCe-eEEEE
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEIL--REY-GQSKTAFVTFKDAKALEIALLLSGATIVDQ-IVSIT 75 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~--~d~-~~~~~AyVtF~~~~aa~tALlLng~~l~g~-~I~V~ 75 (266)
.++||+||++.+.+.+|+++|++.|.|+.+++. .+. ..+|.||+.|.++..+..|+.++...+-|+ .+.|.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~ 742 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAIS 742 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhee
Confidence 478999999999999999999999988887775 222 357999999999999999997665555554 44443
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.39 E-value=0.033 Score=55.80 Aligned_cols=74 Identities=23% Similarity=0.222 Sum_probs=63.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcc-cCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-----HhcCCeecCeeEEE
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFS-FSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-----LLSGATIVDQIVSI 74 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs-~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-----lLng~~l~g~~I~V 74 (266)
.+||||++||--.+-++|..+|. .+|.|..+-|-.|++ +.|-+-|+|.+.++.-+|+ .|+...|+- .|.|
T Consensus 370 rrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~K-RVEI 448 (520)
T KOG0129|consen 370 RRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDK-RVEI 448 (520)
T ss_pred cceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccce-eeee
Confidence 47999999999999999999998 689999999988853 5799999999999988887 377777765 7888
Q ss_pred EeCC
Q 024507 75 TPAE 78 (266)
Q Consensus 75 ~~a~ 78 (266)
.|+-
T Consensus 449 kPYv 452 (520)
T KOG0129|consen 449 KPYV 452 (520)
T ss_pred ccee
Confidence 7753
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.10 E-value=0.026 Score=55.13 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=61.7
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCC-ceeE--EEEEecC--CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSG-DIER--IEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG-~I~~--I~l~~d~--~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..|...+||+.++.+||-+||..+- .|.. |.|+.+. .++|-|||.|.+++.+..|. ...+.....|.|.|-++.
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 4789999999999999999998654 5655 8888775 46899999999999999887 566666779999998774
No 112
>PLN03120 nucleic acid binding protein; Provisional
Probab=94.99 E-value=0.014 Score=54.16 Aligned_cols=51 Identities=24% Similarity=0.344 Sum_probs=41.1
Q ss_pred hhcHHHHHHHHHhhhhcCCcHHHH-------HHHhhhhhccCcccccccchhhhhhhh
Q 024507 134 AIRQEAVNKAKAFDEKHQFTANAS-------AKVISFDRRVGFTEKLTVGISVVNEKV 184 (266)
Q Consensus 134 vl~d~ai~KA~~fDekhgiSs~~~-------~~v~~lD~k~g~tek~~~g~~~v~~k~ 184 (266)
-|+-.+..+..+||+|+|+|.++. .++.++|+|||+|||.....++..+++
T Consensus 136 ~~ss~a~a~v~~~d~k~gltek~~~g~~~v~~~~k~vDeky~vs~kt~sa~~~~~~~~ 193 (260)
T PLN03120 136 QLTSTASAKVASLDKKIGLSEKLSAGTAVVNEKVKEVDQKYQVSEKTKSALAAAEQKV 193 (260)
T ss_pred chHHHHHHHHHhhhhhcCcccccccchHHHHHHHHhhhhhhchhHHHHHHHHHHHHHH
Confidence 345667788999999999999865 789999999999999877665554444
No 113
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.70 E-value=0.097 Score=49.76 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=56.7
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCee-EEEEeCCC
Q 024507 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQI-VSITPAEN 79 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~-I~V~~a~~ 79 (266)
=|.|-+++|... .-|-..|+.||+|.+...... ..+-+|.|.+...+.+||-.||..|+|.. |=|.+|.|
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n---gNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN---GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecCCC---CceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 477788888765 446667899999988777633 45999999999999999999999999884 66787654
No 114
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.43 E-value=0.22 Score=48.68 Aligned_cols=74 Identities=19% Similarity=0.326 Sum_probs=63.7
Q ss_pred ccEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~-~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
+.-+.|-+|.. ....+.|-.+|.-+|.|++|.+++.. .++|.|+..|+.+++.|+ .|||..|-|..|.|.....
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 45677888875 55778899999999999999998653 679999999999999999 7999999999999987654
No 115
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=94.27 E-value=0.062 Score=49.97 Aligned_cols=73 Identities=11% Similarity=0.238 Sum_probs=61.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~ 76 (266)
...||.+.|.-.++.+.|-.-|..+=.-..-++++|. .+.++.||-|.++.++..|+ .+||..++.|+|....
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 4689999999999999999999876655566666665 35789999999999999999 6999999999988653
No 116
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.26 E-value=0.074 Score=55.36 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=57.5
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCcee--EEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEe
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIE--RIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITP 76 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~--~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~ 76 (266)
--|...|||+.+...|||.|||-. +|- -|.|+- +..|-|||.|.+.++|.-|++.++.+|.|..|+.-.
T Consensus 3 VIIRLqnLP~tAga~DIR~FFSGL-~IPdGgVHIIG--Ge~GeaFI~FsTDeDARlaM~kdr~~i~g~~VrLlL 73 (944)
T KOG4307|consen 3 VIIRLQNLPMTAGASDIRTFFSGL-KIPDGGVHIIG--GEEGEAFIGFSTDEDARLAMTKDRLMIHGAEVRLLL 73 (944)
T ss_pred eEEEecCCcccccchHHHHhhccc-ccCCCceEEec--ccccceEEEecccchhhhhhhhcccceecceEEEEe
Confidence 367889999999999999999865 443 355553 346899999999999999999999999999888744
No 117
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=93.92 E-value=0.16 Score=51.25 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=48.7
Q ss_pred HHHHHHcccCCceeEEEEEec-CC-----CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 19 REIHEFFSFSGDIERIEILRE-YG-----QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 19 ~dL~efFs~cG~I~~I~l~~d-~~-----~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
++++.=++.+|.|.+|++.++ .. ..|.-||+|.+.++.+.|+ .|+|..+.||.|..+-+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 345555677899999999987 31 3588999999999999999 69999999999877653
No 118
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=93.61 E-value=0.18 Score=45.23 Aligned_cols=60 Identities=13% Similarity=0.219 Sum_probs=54.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeec
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIV 68 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~ 68 (266)
..|.|++||++.++.||+++....|.|-.-++.+|. +..|+|-..+.++-|+ .|+.+.+.
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg----~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG----VGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc----ceeeeeeehhhHHHHHHhhcccccc
Confidence 579999999999999999999999999999998774 8999999999999999 58877664
No 119
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.17 E-value=0.14 Score=52.11 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=55.8
Q ss_pred cEEEEeCCCC--cccH----HHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHH-HhcCCeecCee-EEE
Q 024507 5 RTVQVKNVSD--LAHE----REIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQI-VSI 74 (266)
Q Consensus 5 ~TV~V~NLs~--~~Te----~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~-I~V 74 (266)
..|.|-|+|- .+.- .-|...|+.+|+|..+.++.+. +..|+.|++|++..+|+.|+ .|||..|+-++ ..|
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 4678888864 1112 2355789999999999998665 56799999999999999999 59999998775 444
Q ss_pred Ee
Q 024507 75 TP 76 (266)
Q Consensus 75 ~~ 76 (266)
..
T Consensus 139 ~~ 140 (698)
T KOG2314|consen 139 RL 140 (698)
T ss_pred eh
Confidence 43
No 120
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.16 E-value=0.046 Score=50.62 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=48.7
Q ss_pred HHHHHHcc-cCCceeEEEEEecCC--CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 19 REIHEFFS-FSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 19 ~dL~efFs-~cG~I~~I~l~~d~~--~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
++|...|+ .+|+|+.+.+....+ -.|-+||.|..+++++.|+ .|||.-+.|++|.-...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45555555 799999998876653 3689999999999999999 69999999999987654
No 121
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.98 E-value=0.46 Score=35.10 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=42.9
Q ss_pred cEEEEeCCCCcccHHHHHHHcccC---CceeEEEEEecCCCCcEEEEEecChHHHHHHHH
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFS---GDIERIEILREYGQSKTAFVTFKDAKALEIALL 61 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~c---G~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl 61 (266)
..|+|.++.. .+.++|+.||..+ ....+|+.+.|. .|-|.|.+++.+..||.
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT----SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC----cEEEEECCHHHHHHHHH
Confidence 4799999854 6778999999876 135789998775 69999999999999984
No 122
>PLN03121 nucleic acid binding protein; Provisional
Probab=92.90 E-value=0.18 Score=46.52 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=47.3
Q ss_pred cCCcHHHHHHHhhhhhccCcccccccchhhhhhhhhhccccccccHHHHHHHHHHHHhhhhhccccccCcccccchhh
Q 024507 150 HQFTANASAKVISFDRRVGFTEKLTVGISVVNEKVKSVDQRLHVSDKTMAAIFAAERKINDTGSAVKTSRYVTAGTAW 227 (266)
Q Consensus 150 hgiSs~~~~~v~~lD~k~g~tek~~~g~~~v~~k~k~vD~~~~vs~kt~sa~~~a~~~~~~a~sa~~~~~y~~~ga~w 227 (266)
+-|+..+..+...||++++|| +.+..||-++|+|+++|||..++..+.+ -+-.+|..+.-.+
T Consensus 131 yvLgkda~~KAkafDE~h~ls-------s~a~a~v~~~d~~iglt~k~~~g~~~vk---------~vDeky~vs~~tk 192 (243)
T PLN03121 131 YVLGKDALSKAKAFDESHQVS-------ATAAAKVAELSKRIGLTDKIFAGMEAVR---------SVDEKYHVSEFTK 192 (243)
T ss_pred chhhHHHHHHHHHHHHhcCcc-------HhhhhhhhhhhhhccchhhhhhhHHHHH---------hhhhhhhhHHHHH
Confidence 557788999999999999999 3455899999999999999988875321 2455666554443
No 123
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.74 E-value=0.13 Score=49.93 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=60.9
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCC--ceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSG--DIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG--~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
+..||+||-|.+|++||-+-....| .|..+.+..++ .++|||.|...+..+++.-+ +|--.+|.|+.-.|.++.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 4689999999999999999888777 35555555443 46899999999998888887 699999999998887763
No 124
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.44 E-value=0.3 Score=46.43 Aligned_cols=59 Identities=22% Similarity=0.220 Sum_probs=49.0
Q ss_pred HHHHHHHcccCCceeEEEEEecCC----CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEe
Q 024507 18 EREIHEFFSFSGDIERIEILREYG----QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (266)
Q Consensus 18 e~dL~efFs~cG~I~~I~l~~d~~----~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~ 76 (266)
|+++++--..||+|..|-|...++ ..---||+|+..+++-+|+ .|||..|+||.+.-+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 567777788999999999987753 2346899999999999998 6999999999987654
No 125
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=92.12 E-value=0.16 Score=47.18 Aligned_cols=76 Identities=21% Similarity=0.191 Sum_probs=62.1
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHHH-hc----CCeecCeeEEEEeC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALL-LS----GATIVDQIVSITPA 77 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALl-Ln----g~~l~g~~I~V~~a 77 (266)
..++|.||++.++-+.+.+-|+.+|+|++--+..|. ..++-..|.|.+.-.+..|+. ++ +.+..+++.-|.|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 579999999999999999999999999987776665 357889999999999999883 43 24556778888777
Q ss_pred CCC
Q 024507 78 ENY 80 (266)
Q Consensus 78 ~~~ 80 (266)
...
T Consensus 112 eq~ 114 (275)
T KOG0115|consen 112 EQP 114 (275)
T ss_pred hcc
Confidence 543
No 126
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.70 E-value=0.64 Score=40.16 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=51.4
Q ss_pred cEEEE----eCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCeeEEE
Q 024507 5 RTVQV----KNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSI 74 (266)
Q Consensus 5 ~TV~V----~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V 74 (266)
.||.| .|+.+.-+-+.|....+-+|+|.+|.+. .++.|.|+|+|-.+|-.|+.--+...-|..+..
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 46777 4888877888888999999999999997 367899999999999999953333444554443
No 127
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.24 E-value=0.36 Score=42.13 Aligned_cols=68 Identities=19% Similarity=0.128 Sum_probs=44.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHccc-CCce---eEEEEEecC-----CCCcEEEEEecChHHHHHHH-HhcCCeecCee
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSF-SGDI---ERIEILREY-----GQSKTAFVTFKDAKALEIAL-LLSGATIVDQI 71 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~-cG~I---~~I~l~~d~-----~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~ 71 (266)
...|.|.+|||+.||+++.+-.+. .|.- .++.-.... .....|||.|.+.+.+..-. .++|..+.+..
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 468999999999999998886665 6655 344422222 12467999999999977765 69998886654
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=89.84 E-value=0.073 Score=56.52 Aligned_cols=71 Identities=30% Similarity=0.309 Sum_probs=60.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEE
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSI 74 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V 74 (266)
.+|+|++|+...+++.+|+--|..+|+|+.|.|-.-. ....++||.|.+-.....|. .+.|..|....+.+
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 5799999999999999999999999999999997653 23679999999999988887 58888776554444
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.45 E-value=0.23 Score=52.64 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=63.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEe
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~ 76 (266)
..|+|.|.|+..|.++++..|+..|.+++++++... .+.|.|||.|.++..+..++ ..++..+.-+.+.|..
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 468999999999999999999999999999988765 46899999999999999988 5888888877766654
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.17 E-value=2.4 Score=34.48 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=47.9
Q ss_pred cEEEEeCCCC-cccHHHHHHHccc-CCceeEEEEEecCCCCc-EEEEEecChHHHHHHH-HhcCCeecCe
Q 024507 5 RTVQVKNVSD-LAHEREIHEFFSF-SGDIERIEILREYGQSK-TAFVTFKDAKALEIAL-LLSGATIVDQ 70 (266)
Q Consensus 5 ~TV~V~NLs~-~~Te~dL~efFs~-cG~I~~I~l~~d~~~~~-~AyVtF~~~~aa~tAL-lLng~~l~g~ 70 (266)
.++.+--+|| -.+-++|..|.+. ...|.+++|+++..+.+ .+.+.|.++.+|..=- .+||..+..-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl 82 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSL 82 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 3444544555 4455667666665 45799999999986555 5899999999998876 7999987643
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.02 E-value=0.21 Score=47.76 Aligned_cols=71 Identities=14% Similarity=0.249 Sum_probs=56.0
Q ss_pred EEEEeCCCCcccHHH-HH--HHcccCCceeEEEEEecC------CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEE
Q 024507 6 TVQVKNVSDLAHERE-IH--EFFSFSGDIERIEILREY------GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSIT 75 (266)
Q Consensus 6 TV~V~NLs~~~Te~d-L~--efFs~cG~I~~I~l~~d~------~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~ 75 (266)
-|||-+|++..-.+. |+ ++|..+|+|.+|.+..+. +....+||||+..+.+..+| -.+|..++|+.++..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 467778887664444 43 799999999999998755 23456999999999999999 599999999986654
Q ss_pred e
Q 024507 76 P 76 (266)
Q Consensus 76 ~ 76 (266)
.
T Consensus 159 ~ 159 (327)
T KOG2068|consen 159 L 159 (327)
T ss_pred h
Confidence 3
No 132
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.60 E-value=0.28 Score=49.13 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=51.0
Q ss_pred cHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEe
Q 024507 17 HEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITP 76 (266)
Q Consensus 17 Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~ 76 (266)
|-.+|..+|..+|+|..|.+-.. ..-|.|||....++-.|-...+..|++|.|+|..
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFW 442 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhccccceecCceeEEEE
Confidence 67889999999999999998544 4679999999999989999999999999999975
No 133
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.37 E-value=2.8 Score=32.98 Aligned_cols=52 Identities=17% Similarity=0.325 Sum_probs=39.0
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hc
Q 024507 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LS 63 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Ln 63 (266)
-.+|+ .|...-..||.++|+.||.| +|..+.|. .|||...+.+.+..++. ++
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT----EEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC----cEEEEeecHHHHHHHHHHhc
Confidence 34555 89999999999999999985 56666553 79999999999999884 44
No 134
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.35 E-value=1.9 Score=43.11 Aligned_cols=67 Identities=15% Similarity=0.293 Sum_probs=57.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcc-cCCceeEEEEEecCCCCc-EEEEEecChHHHHHHH-HhcCCeecCe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFS-FSGDIERIEILREYGQSK-TAFVTFKDAKALEIAL-LLSGATIVDQ 70 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs-~cG~I~~I~l~~d~~~~~-~AyVtF~~~~aa~tAL-lLng~~l~g~ 70 (266)
.+.+.|--+|...|..||-.|.. ++-.|.+|++++|+.+.+ ...|.|.+..+|.+-- .+||..+..-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 46789999999999999998884 567899999999886665 5999999999999987 6999988654
No 135
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.10 E-value=0.43 Score=49.32 Aligned_cols=69 Identities=25% Similarity=0.125 Sum_probs=59.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
+..+|||+||+..+..+-++-...+||-|.++... .|+|..|.++.+.-.|+ +|+--.++|+.+.+...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh------hhcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 34699999999999999999999999998877654 29999999999888887 68888999998887764
No 136
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=84.55 E-value=1.1 Score=44.00 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=54.0
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH---hcCCeecCeeE
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL---LSGATIVDQIV 72 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl---Lng~~l~g~~I 72 (266)
-.|+|.||-..++|.||-+-.+.+|.|-.+.+... ++.|.|+|+|-+.++.++. -|.-.+.|+.-
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~---~r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH---KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCceEEEEeccc---cceeeeeeccccchhhheehhccCcccccCchh
Confidence 36999999999999999999999999999988754 6689999999999999883 33344555543
No 137
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.38 E-value=2.7 Score=37.14 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=44.8
Q ss_pred cHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-Hhc--CCeecCeeEEEEeC
Q 024507 17 HEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLS--GATIVDQIVSITPA 77 (266)
Q Consensus 17 Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLn--g~~l~g~~I~V~~a 77 (266)
..+.|+++|+.++.+..+..++. .+-..|.|.+.+.|..|. .|+ +..+.|..++|--.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 35789999999999988888743 678999999999999997 688 99999999998654
No 138
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=83.73 E-value=4.2 Score=30.16 Aligned_cols=58 Identities=29% Similarity=0.377 Sum_probs=34.6
Q ss_pred CcccHHHHHHHcccCC-----ceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 14 DLAHEREIHEFFSFSG-----DIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 14 ~~~Te~dL~efFs~cG-----~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
...+..+|..++...+ .|-+|+|. ..++||+-... .++.++ .|++..+.|++|.|+++
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3578889999998664 45578876 44899998875 555666 79999999999999864
No 139
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=82.49 E-value=0.38 Score=47.25 Aligned_cols=73 Identities=18% Similarity=0.087 Sum_probs=60.0
Q ss_pred ccEEEEeCCCCc-ccHHHHHHHcccCCceeEEEEEecC-CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEe
Q 024507 4 TRTVQVKNVSDL-AHEREIHEFFSFSGDIERIEILREY-GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITP 76 (266)
Q Consensus 4 ~~TV~V~NLs~~-~Te~dL~efFs~cG~I~~I~l~~d~-~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~ 76 (266)
.+++||+++.+. ++-.+...+|-|++...-|.+..+. .+..+||+.|.+..++.-+|..||..+.+++++...
T Consensus 52 sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~n 126 (479)
T KOG4676|consen 52 SRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKIN 126 (479)
T ss_pred eeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCcccccc
Confidence 479999999985 5678888999999888777777665 356679999999999999999999888888886543
No 140
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=82.24 E-value=2.5 Score=34.62 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=35.6
Q ss_pred EEEEeCCCCcc---------cHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecCh-HHHHHHHHhcC
Q 024507 6 TVQVKNVSDLA---------HEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDA-KALEIALLLSG 64 (266)
Q Consensus 6 TV~V~NLs~~~---------Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~-~aa~tALlLng 64 (266)
++.|-|++... +-++|++.|+.+..++-..+....+..+++.|.|.+. .+...|+.|..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHH
Confidence 67888886643 5678999998777765444444446789999999865 67888886653
No 141
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=78.73 E-value=3 Score=44.84 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=62.3
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCe--eEEEEeCCCCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQ--IVSITPAENYV 81 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~--~I~V~~a~~~~ 81 (266)
+.++|++|.+.+....|...|..+|.|..|.+.- ...+|||.|++...+..|. .+-|..|++- .|.|..+..-.
T Consensus 456 tr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 456 TRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred eeeccCCCCCCChHHHHHHHhhccCcceeeeccc---CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 5689999999999999999999999999988852 2459999999999999999 5999999864 67776665433
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=76.18 E-value=2.9 Score=41.79 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=51.3
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCC-eecCeeEEEEe
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGA-TIVDQIVSITP 76 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~-~l~g~~I~V~~ 76 (266)
..+|++||+|.++..+|...|... + +...+ -.+++|||...+...+-.|+ .|||. ++.|.++.|..
T Consensus 2 nklyignL~p~~~psdl~svfg~a-k-----~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA-K-----IPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc-c-----CCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence 357999999999999999999754 1 11111 14789999999999999999 58874 47788887754
No 143
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=74.85 E-value=8.4 Score=29.49 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=41.5
Q ss_pred EEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCCCCcEEEEEecChHHHH
Q 024507 6 TVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYGQSKTAFVTFKDAKALE 57 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~-cG-~I~~I~l~~d~~~~~~AyVtF~~~~aa~ 57 (266)
.-|+-.+++.++..+|++.+.. || +|.+|+...-+..-+.|||++...+.|.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~ 68 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAE 68 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHH
Confidence 4678889999999999988874 56 7888888776666789999997765443
No 144
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=73.59 E-value=3.4 Score=38.24 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=46.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-------------------CCcEEEEEecChHHHHHHHHhcC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-------------------QSKTAFVTFKDAKALEIALLLSG 64 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~-------------------~~~~AyVtF~~~~aa~tALlLng 64 (266)
..++|+-|||+.+||+.|.+|-+.||-+..+.+....+ ...+|+++|.-+.-+..+..|-+
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~~e~gl~es~~~ar~sl~~p~~v~~~~~a~k~~~~ps~~~c~~alk~ 119 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYNDEFGLHESDLSARTSLLMPSTVNEKRYAPKFVDAPSINNCWNALKK 119 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhheecccchhhhhCCchhhhhhccCCcccceeeccceeecchHHHHHhccCc
Confidence 46899999999999999999999999777766654321 13577777777666555555554
Q ss_pred Ce
Q 024507 65 AT 66 (266)
Q Consensus 65 ~~ 66 (266)
..
T Consensus 120 ~~ 121 (261)
T KOG4008|consen 120 YS 121 (261)
T ss_pred cc
Confidence 44
No 145
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=73.54 E-value=9 Score=29.83 Aligned_cols=53 Identities=17% Similarity=0.126 Sum_probs=42.8
Q ss_pred EEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCCCCcEEEEEecChHHHHH
Q 024507 6 TVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYGQSKTAFVTFKDAKALEI 58 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~-cG-~I~~I~l~~d~~~~~~AyVtF~~~~aa~t 58 (266)
..|+-.+++.++..+|++.+.. || +|.+|+...-....+.|||+|...+.|..
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~ 76 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEE 76 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHH
Confidence 4677778999999999999974 56 78899888776667899999988766554
No 146
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=72.55 E-value=2.6 Score=43.53 Aligned_cols=71 Identities=8% Similarity=0.171 Sum_probs=54.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcc-cCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCee---cCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFS-FSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATI---VDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs-~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l---~g~~I~V~~a 77 (266)
++.|||.||---.|..+|+++.. .||.|+...| |. -+..|||.|.+.+.|-.-. .|+|-.. +++.|+|...
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk-IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK-IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHHHH--HH-hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 35799999999999999999998 7999988733 21 2457999999886655544 7999776 4567777544
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=71.73 E-value=1.9 Score=40.46 Aligned_cols=71 Identities=20% Similarity=0.045 Sum_probs=57.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHHhcCC-eecCeeEEE
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGA-TIVDQIVSI 74 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALlLng~-~l~g~~I~V 74 (266)
..+.++++++..+.+.++..||...|......+.... -..+++++.|+..+.+..+|.+++. .+.++.+..
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~ 162 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEK 162 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccC
Confidence 4678999999999999999999999977776665533 2478999999999999999999996 555554443
No 148
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=71.52 E-value=6 Score=29.34 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=16.6
Q ss_pred HHHHHHcccCCceeEEEEEe
Q 024507 19 REIHEFFSFSGDIERIEILR 38 (266)
Q Consensus 19 ~dL~efFs~cG~I~~I~l~~ 38 (266)
.+||+|||..|+|.-+-+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 68999999999998766643
No 149
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=68.71 E-value=12 Score=38.62 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=50.9
Q ss_pred cEEEEeCCCCcccHHHHHHHcc--cCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hc--CCeecCeeEE
Q 024507 5 RTVQVKNVSDLAHEREIHEFFS--FSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LS--GATIVDQIVS 73 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs--~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Ln--g~~l~g~~I~ 73 (266)
+-|.+.-||..+-+++|+-+|+ .|=++.+|++--++ -=||||++..+|+.|.. |- -.+|-|++|.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3477889999999999999997 49999999997655 48999999999998862 32 2445555543
No 150
>PF01296 Galanin: Galanin; InterPro: IPR008174 Galanin is a peptide hormone that controls various biological activities []. Galanin-like immuno-reactivity has been found in the central and peripheral nervous systems of mammals, with high concentrations demonstrated in discrete regions of the central nervous system, including the median eminence, hypothalamus, arcuate nucleus, septum, neuro-intermediate lobe of the pituitary, and the spinal cord. Its localisation within neurosecretory granules suggests that galanin may function as a neurotransmitter, and it has been shown to coexist with a variety of other peptide and amine neurotransmitters within individual neurons []. Although the precise physiological role of galanin is uncertain, it has a number of pharmacological properties: it stimulates food intake, when injected into the third ventricle of rats; it increases levels of plasma growth hormone and prolactin, and decreases dopamine levels in the median eminence []; and infusion into humans results in hyperglycemia and glucose intolerance, and inhibits pancreatic release of insulin, somatostatin and pancreatic peptide. Galanin also modulates smooth muscle contractility within the gastro-intestinal and genito-urinary tracts, all such activities suggesting that the hormone may play an important role in the nervous modulation of endocrine and smooth muscle function []. Galanin is a 29 amino acid peptide processed from a larger precursor protein. Except in human, galanin is C-terminally amidated. Its sequence is highly conserved and the first 14 residues are identical in all currently known sequences.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=61.96 E-value=1.3 Score=27.85 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=22.4
Q ss_pred HhhccchhcHHHHHHHHHhhhhcCCc
Q 024507 128 VLARGSAIRQEAVNKAKAFDEKHQFT 153 (266)
Q Consensus 128 ~LA~Gyvl~d~ai~KA~~fDekhgiS 153 (266)
+-..||.||..+|.-=+.|-+|||+.
T Consensus 4 lnsagyLlGPhaiD~HRSf~DK~Gla 29 (29)
T PF01296_consen 4 LNSAGYLLGPHAIDNHRSFGDKHGLA 29 (29)
T ss_pred ccccceEeccccccCccccccccCCC
Confidence 34579999999999999999999973
No 151
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=43.47 E-value=51 Score=25.62 Aligned_cols=52 Identities=23% Similarity=0.299 Sum_probs=38.6
Q ss_pred EEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCC-----C--------CcEEEEEecChHHHH
Q 024507 6 TVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYG-----Q--------SKTAFVTFKDAKALE 57 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~-cG-~I~~I~l~~d~~-----~--------~~~AyVtF~~~~aa~ 57 (266)
..++-.+++.+|..||++++.. +| +|.+|+...-.+ . .+.|||++.+.+..+
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~i~ 87 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDKIP 87 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSCHH
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCccc
Confidence 4567788999999999999974 56 677887765431 1 268999999876544
No 152
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=43.20 E-value=45 Score=26.12 Aligned_cols=50 Identities=26% Similarity=0.284 Sum_probs=36.3
Q ss_pred cEEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCC-------------CCcEEEEEecChH
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYG-------------QSKTAFVTFKDAK 54 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~-cG-~I~~I~l~~d~~-------------~~~~AyVtF~~~~ 54 (266)
...++-.+++.++..+|++.|.. +| +|.+|+...-.+ ..+.|||++...+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr~~~~~g~~~~~KKA~VtL~~g~ 84 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGRRIGKRSDWKKAIVTLAEGQ 84 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceeeecccccccCCcEEEEEEcCCCC
Confidence 35677889999999999999974 56 677777654331 2367888887654
No 153
>CHL00030 rpl23 ribosomal protein L23
Probab=40.25 E-value=47 Score=26.27 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=37.6
Q ss_pred cEEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCCC-------------CcEEEEEecChHH
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYGQ-------------SKTAFVTFKDAKA 55 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~-cG-~I~~I~l~~d~~~-------------~~~AyVtF~~~~a 55 (266)
...|+--+++.++..+|++.|.. || +|.+|....-++. .+-|||++.+.+.
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k~kr~~~~~G~~~~~KKAiVtL~~g~~ 84 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKRRMGPIMGHKMHYKRMIITLQPGYS 84 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCCccccCCcccccCCcEEEEEEcCCcCE
Confidence 35677788999999999988874 55 6888887654321 2578999887554
No 154
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=39.66 E-value=1.3e+02 Score=21.03 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=38.3
Q ss_pred EEEeCCCCcccHHHHHHHcccCC-ceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCe
Q 024507 7 VQVKNVSDLAHEREIHEFFSFSG-DIERIEILREYGQSKTAFVTFKDAKALEIALLLSGAT 66 (266)
Q Consensus 7 V~V~NLs~~~Te~dL~efFs~cG-~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~ 66 (266)
|.|.|=|-. =.+|-+.|+..| .|.++......+ ...--+.+.+++.+...|.-+|-+
T Consensus 6 v~v~d~pG~--La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~~~G~~ 63 (66)
T cd04908 6 VFLENKPGR--LAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALKEAGFA 63 (66)
T ss_pred EEEcCCCCh--HHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHHHCCCE
Confidence 444444433 356888898887 789998765544 466666778877788777766654
No 155
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=34.94 E-value=76 Score=26.43 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=36.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTF 50 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF 50 (266)
....++.|++...+..++...|..+|.|....+..........+..|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 225 SDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred cceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccc
Confidence 46789999999999999999999999997777766554333444444
No 156
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=32.43 E-value=1.3e+02 Score=25.78 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=42.1
Q ss_pred EEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCCCCcEEEEEecChH-HHHHHH
Q 024507 6 TVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYGQSKTAFVTFKDAK-ALEIAL 60 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~-cG-~I~~I~l~~d~~~~~~AyVtF~~~~-aa~tAL 60 (266)
.-||-.++..++..+|++.+.. || +|..|..+.-++..+-|||++...+ +.+-|-
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4677788999999999988874 55 6888888776665678999997655 455553
No 157
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=32.14 E-value=92 Score=27.10 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=28.7
Q ss_pred cEEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREY 40 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~-cG-~I~~I~l~~d~ 40 (266)
...|+-.+++.++..+|++.|.. || +|.+|+.+.-+
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~ 59 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVD 59 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecC
Confidence 35788899999999999999874 56 68888876543
No 158
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=30.98 E-value=1.1e+02 Score=23.97 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=34.9
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKD 52 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~ 52 (266)
.-|||+|++..+-|.=....-..|++=.-+-+.++.+..||.|-++-+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G~ 73 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLGD 73 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeCC
Confidence 359999999999887777777777764444445555667888888744
No 159
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.71 E-value=2.1e+02 Score=30.08 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=53.6
Q ss_pred ccEEEEeCCCC-cccHHHHHHHcc-cC---CceeEEEEEecC------------CC------------------------
Q 024507 4 TRTVQVKNVSD-LAHEREIHEFFS-FS---GDIERIEILREY------------GQ------------------------ 42 (266)
Q Consensus 4 ~~TV~V~NLs~-~~Te~dL~efFs-~c---G~I~~I~l~~d~------------~~------------------------ 42 (266)
++.+-|.|+.| .+..++|.-.|+ || |.|.+|.|.+.. ++
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 46789999999 568889998885 54 699999998642 11
Q ss_pred ------------C--cEEEEEecChHHHHHHH-HhcCCeecCeeEE
Q 024507 43 ------------S--KTAFVTFKDAKALEIAL-LLSGATIVDQIVS 73 (266)
Q Consensus 43 ------------~--~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~ 73 (266)
. =||.|+|.+...+...- .++|.++......
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~ 299 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANK 299 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccce
Confidence 0 16889999998887766 6999999866533
No 160
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=28.91 E-value=38 Score=26.60 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHc
Q 024507 4 TRTVQVKNVSDLAHEREIHEFF 25 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efF 25 (266)
.+||.|+|||....|++|+|..
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeE
Confidence 5899999999999999999764
No 161
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.90 E-value=1.7e+02 Score=25.58 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=41.5
Q ss_pred cEEEEeCCCCcccHHHHHHHccc---CCceeEEEEEecCC-------------CCcEEEEEecChHH
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSF---SGDIERIEILREYG-------------QSKTAFVTFKDAKA 55 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~---cG~I~~I~l~~d~~-------------~~~~AyVtF~~~~a 55 (266)
..|++.-++..++|++.++.-+. .++|.+|++-+..+ +-.|-||.|++-.-
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 57999999999999999999875 57899999987653 12489999997543
No 162
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=28.14 E-value=39 Score=36.66 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=51.5
Q ss_pred CCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCee--cCeeEEEEeCC
Q 024507 13 SDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATI--VDQIVSITPAE 78 (266)
Q Consensus 13 s~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l--~g~~I~V~~a~ 78 (266)
+-..+-.-|..+|+.+|++.+.+.+++. ..|.|.|..-+.+-.|+ .|.|.++ .|.+.+|.-+.
T Consensus 307 ~v~~tSssL~~l~s~yg~v~s~wtlr~~---N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 307 AVNLTSSSLATLCSDYGSVASAWTLRDL---NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred cccchHHHHHHHHHhhcchhhheecccc---cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3366778899999999999999998774 37999999999999888 6998774 57777776554
No 163
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.44 E-value=18 Score=34.61 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=47.6
Q ss_pred cEEEEeCCCCc------------ccHHHHHHHcccCCceeEEEEEecC-------C-C-----Cc---------EEEEEe
Q 024507 5 RTVQVKNVSDL------------AHEREIHEFFSFSGDIERIEILREY-------G-Q-----SK---------TAFVTF 50 (266)
Q Consensus 5 ~TV~V~NLs~~------------~Te~dL~efFs~cG~I~~I~l~~d~-------~-~-----~~---------~AyVtF 50 (266)
-|||..+||.. -+|+-|+..|..+|.|..|.|+..+ + . .+ -|||.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 58999998863 3788999999999999999987543 1 0 11 267888
Q ss_pred cChHHHHHHH-HhcCCee
Q 024507 51 KDAKALEIAL-LLSGATI 67 (266)
Q Consensus 51 ~~~~aa~tAL-lLng~~l 67 (266)
-.-.+.-+|+ .|-|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 8888888888 5777554
No 164
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=27.21 E-value=2e+02 Score=19.23 Aligned_cols=42 Identities=24% Similarity=0.353 Sum_probs=31.4
Q ss_pred HHHHHHcccCC-ceeEEEEEecCCCCcEEEEEecChHHHHHHH
Q 024507 19 REIHEFFSFSG-DIERIEILREYGQSKTAFVTFKDAKALEIAL 60 (266)
Q Consensus 19 ~dL~efFs~cG-~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL 60 (266)
.+|-+.|+..| .|.++......+......+.+++.+.|..+|
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 45667777776 7989987765545778888999987777665
No 165
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.06 E-value=2.2e+02 Score=19.73 Aligned_cols=52 Identities=13% Similarity=0.225 Sum_probs=33.9
Q ss_pred cHHHHHHHcccCC-ceeEEEEEecCC-CCcEEEEEec--ChHHHHHHHHhcCCeec
Q 024507 17 HEREIHEFFSFSG-DIERIEILREYG-QSKTAFVTFK--DAKALEIALLLSGATIV 68 (266)
Q Consensus 17 Te~dL~efFs~cG-~I~~I~l~~d~~-~~~~AyVtF~--~~~aa~tALlLng~~l~ 68 (266)
.-.+|-++|+.+| .|.++....... .....++.++ +++.+..+|.-+|-.+.
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHCCCeee
Confidence 3456888999887 688887655432 2344556665 66677777777776543
No 166
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=23.33 E-value=91 Score=28.76 Aligned_cols=30 Identities=40% Similarity=0.542 Sum_probs=20.4
Q ss_pred EEEEecChHHHHHHHHh-cCCeecCeeEEEEeC
Q 024507 46 AFVTFKDAKALEIALLL-SGATIVDQIVSITPA 77 (266)
Q Consensus 46 AyVtF~~~~aa~tALlL-ng~~l~g~~I~V~~a 77 (266)
|||+|+++.++..|+.+ .... ++.+.|.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 79999999999999852 2222 244466554
No 167
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=23.16 E-value=80 Score=30.27 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=42.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC----------CCCcEEEEEecChHH
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY----------GQSKTAFVTFKDAKA 55 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~----------~~~~~AyVtF~~~~a 55 (266)
.|.+-..|+....+-..+-.-|-.+|+|++|.|..+. ...+...+-|=+.+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~ 76 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREI 76 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHH
Confidence 4678889999999888888889999999999999765 124678888876543
No 168
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=22.84 E-value=1e+02 Score=25.48 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=24.3
Q ss_pred eeEEEEEecC-CCCcEEEEEecChHHHHH
Q 024507 31 IERIEILREY-GQSKTAFVTFKDAKALEI 58 (266)
Q Consensus 31 I~~I~l~~d~-~~~~~AyVtF~~~~aa~t 58 (266)
|..|+|.+.+ +..|.|...|++|.++..
T Consensus 15 ip~VrLtRsrdg~~g~a~f~F~~p~al~~ 43 (113)
T CHL00128 15 IPDVRLTRSRDGSTGTATFRFKNPNILDK 43 (113)
T ss_pred CCceEEEEccCCCceEEEEEECCchhhhh
Confidence 7789999887 578999999999988766
No 169
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=22.27 E-value=1e+02 Score=25.30 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=24.2
Q ss_pred eeEEEEEecC-CCCcEEEEEecChHHHHH
Q 024507 31 IERIEILREY-GQSKTAFVTFKDAKALEI 58 (266)
Q Consensus 31 I~~I~l~~d~-~~~~~AyVtF~~~~aa~t 58 (266)
|..|+|.+.+ +..|.|...|++|.++..
T Consensus 12 ip~VrLtRsrdg~~g~a~f~F~~p~al~~ 40 (109)
T TIGR03047 12 IPDVRLTRSRDGGTGTALFRFENPKALDK 40 (109)
T ss_pred CCceEEEEccCCCceEEEEEECCchhhhh
Confidence 7889999887 578999999999988665
No 170
>PF14160 FAM110_C: Centrosome-associated C terminus
Probab=21.57 E-value=50 Score=27.13 Aligned_cols=14 Identities=29% Similarity=0.702 Sum_probs=11.9
Q ss_pred ccHHHHHHHcccCC
Q 024507 16 AHEREIHEFFSFSG 29 (266)
Q Consensus 16 ~Te~dL~efFs~cG 29 (266)
..-.||..||.+||
T Consensus 18 ~~~sele~FF~~cG 31 (111)
T PF14160_consen 18 RALSELERFFNYCG 31 (111)
T ss_pred ccHHHHHHHHHHcC
Confidence 34589999999999
No 171
>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]
Probab=20.30 E-value=1.4e+02 Score=23.75 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhhcC-CcHHHHHHHh-hhhhccCcc
Q 024507 138 EAVNKAKAFDEKHQ-FTANASAKVI-SFDRRVGFT 170 (266)
Q Consensus 138 ~ai~KA~~fDekhg-iSs~~~~~v~-~lD~k~g~t 170 (266)
+|+.-|++-=+++. +......+|. +||+|||.+
T Consensus 20 ~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~ 54 (90)
T KOG3430|consen 20 EAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPT 54 (90)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCc
Confidence 44444444334444 5555566664 688888755
No 172
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.06 E-value=1.5e+02 Score=20.25 Aligned_cols=26 Identities=8% Similarity=0.166 Sum_probs=22.4
Q ss_pred hHHHHHHHHhhccchhcHHHHHHHHH
Q 024507 120 RAQEVVTSVLARGSAIRQEAVNKAKA 145 (266)
Q Consensus 120 ~aq~Iva~~LA~Gyvl~d~ai~KA~~ 145 (266)
.....+..|..+||-++++.+++++.
T Consensus 20 ~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred hHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34578999999999999999998874
Done!