Query 024507
Match_columns 266
No_of_seqs 265 out of 1093
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 09:27:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.7 1.2E-17 4.2E-22 129.3 10.6 75 3-77 18-96 (99)
2 3ucg_A Polyadenylate-binding p 99.7 5E-17 1.7E-21 120.9 10.3 76 4-79 6-84 (89)
3 4f25_A Polyadenylate-binding p 99.7 4E-17 1.4E-21 128.8 9.6 76 4-79 5-82 (115)
4 3s7r_A Heterogeneous nuclear r 99.7 1E-16 3.5E-21 119.2 10.2 75 3-77 10-87 (87)
5 1s79_A Lupus LA protein; RRM, 99.7 2.1E-17 7E-22 129.4 6.5 77 3-79 10-88 (103)
6 2dgx_A KIAA0430 protein; RRM d 99.7 1E-16 3.6E-21 122.3 10.1 78 2-79 7-89 (96)
7 2cq3_A RNA-binding protein 9; 99.7 3.2E-16 1.1E-20 120.2 12.3 77 3-79 14-92 (103)
8 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.2E-16 4.1E-21 117.9 9.2 75 3-77 6-84 (85)
9 2dgs_A DAZ-associated protein 99.7 2.5E-16 8.5E-21 120.0 11.3 76 3-78 9-87 (99)
10 3md1_A Nuclear and cytoplasmic 99.7 2E-16 6.7E-21 116.3 10.1 75 4-78 1-79 (83)
11 2ywk_A Putative RNA-binding pr 99.7 1.7E-16 5.7E-21 119.7 9.9 75 4-78 16-93 (95)
12 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.7E-16 6E-21 117.5 9.7 76 3-78 5-84 (87)
13 3s8s_A Histone-lysine N-methyl 99.7 1.8E-16 6.2E-21 125.2 10.4 75 4-78 6-84 (110)
14 4a8x_A RNA-binding protein wit 99.7 2.1E-16 7.1E-21 117.1 10.0 74 4-77 4-82 (88)
15 2dgv_A HnRNP M, heterogeneous 99.7 1.7E-16 5.8E-21 119.0 9.5 78 3-80 7-86 (92)
16 3p5t_L Cleavage and polyadenyl 99.7 3.6E-17 1.2E-21 123.3 5.7 75 5-79 2-82 (90)
17 1x4a_A Splicing factor, argini 99.7 2.7E-16 9.3E-21 122.0 10.8 76 4-79 22-98 (109)
18 1whw_A Hypothetical protein ri 99.7 2.7E-16 9.4E-21 119.5 10.6 77 3-79 7-87 (99)
19 2mss_A Protein (musashi1); RNA 99.7 6.2E-17 2.1E-21 117.3 6.7 72 6-77 1-75 (75)
20 2cpf_A RNA binding motif prote 99.7 3E-16 1E-20 119.1 10.2 77 3-79 4-87 (98)
21 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.1E-16 1E-20 120.3 10.2 76 4-79 15-92 (103)
22 2dgo_A Cytotoxic granule-assoc 99.7 4.6E-16 1.6E-20 121.5 11.3 81 3-83 14-98 (115)
23 2dnz_A Probable RNA-binding pr 99.7 4.8E-16 1.6E-20 117.1 11.0 77 3-79 4-84 (95)
24 1x5t_A Splicing factor 3B subu 99.7 3.2E-16 1.1E-20 118.3 9.8 77 3-79 4-85 (96)
25 2db1_A Heterogeneous nuclear r 99.7 2.1E-16 7.3E-21 125.6 8.6 75 4-78 17-96 (118)
26 2cqc_A Arginine/serine-rich sp 99.7 3.8E-16 1.3E-20 117.4 9.5 75 4-78 15-93 (95)
27 2e5h_A Zinc finger CCHC-type a 99.7 4.5E-16 1.6E-20 117.0 9.6 74 4-77 16-93 (94)
28 2cq0_A Eukaryotic translation 99.7 6.6E-16 2.2E-20 118.4 10.7 77 3-79 14-94 (103)
29 2dnm_A SRP46 splicing factor; 99.7 4E-16 1.4E-20 119.6 9.4 77 3-79 12-92 (103)
30 1wi8_A EIF-4B, eukaryotic tran 99.7 4.7E-16 1.6E-20 119.6 9.8 75 4-79 15-93 (104)
31 2lkz_A RNA-binding protein 5; 99.7 2.7E-16 9.2E-21 121.8 8.4 75 5-79 10-94 (95)
32 2d9p_A Polyadenylate-binding p 99.7 6.9E-16 2.3E-20 118.3 10.6 77 3-79 14-92 (103)
33 1wez_A HnRNP H', FTP-3, hetero 99.7 2.5E-16 8.7E-21 122.5 8.2 75 3-78 14-90 (102)
34 2dnn_A RNA-binding protein 12; 99.7 3.9E-16 1.3E-20 123.8 9.5 74 4-78 16-91 (109)
35 2do4_A Squamous cell carcinoma 99.6 7.1E-16 2.4E-20 117.7 10.5 75 4-78 17-94 (100)
36 1x5s_A Cold-inducible RNA-bind 99.6 3.3E-16 1.1E-20 119.7 8.5 77 3-79 11-91 (102)
37 3lqv_A PRE-mRNA branch site pr 99.6 5.2E-16 1.8E-20 121.2 9.8 75 3-77 7-82 (115)
38 2x1f_A MRNA 3'-END-processing 99.6 6.4E-16 2.2E-20 117.3 9.9 76 4-79 2-81 (96)
39 2dng_A Eukaryotic translation 99.6 1E-15 3.4E-20 117.6 11.1 75 4-79 15-92 (103)
40 1wg5_A Heterogeneous nuclear r 99.6 4.1E-16 1.4E-20 120.8 8.9 75 4-78 15-92 (104)
41 3ns6_A Eukaryotic translation 99.6 3E-16 1E-20 120.9 8.1 74 4-77 6-90 (100)
42 2cq4_A RNA binding motif prote 99.6 4.1E-16 1.4E-20 121.9 8.9 74 4-77 25-101 (114)
43 2err_A Ataxin-2-binding protei 99.6 5.3E-16 1.8E-20 121.3 9.5 76 3-78 28-105 (109)
44 2cpy_A RNA-binding protein 12; 99.6 3E-16 1E-20 123.4 8.2 76 3-78 14-92 (114)
45 3ulh_A THO complex subunit 4; 99.6 7.8E-16 2.7E-20 118.6 10.2 76 3-78 28-106 (107)
46 1p27_B RNA-binding protein 8A; 99.6 4.7E-16 1.6E-20 119.6 9.0 75 4-78 23-101 (106)
47 2lxi_A RNA-binding protein 10; 99.6 1.8E-16 6E-21 120.7 6.4 74 4-77 1-80 (91)
48 2dh8_A DAZ-associated protein 99.6 3.2E-16 1.1E-20 120.6 7.9 76 4-79 16-94 (105)
49 2e5g_A U6 snRNA-specific termi 99.6 9.9E-16 3.4E-20 116.0 10.3 75 3-79 7-81 (94)
50 2jwn_A Embryonic polyadenylate 99.6 6.8E-16 2.3E-20 122.1 9.8 75 4-78 36-113 (124)
51 2cpz_A CUG triplet repeat RNA- 99.6 8.1E-16 2.8E-20 120.3 10.0 76 4-79 25-104 (115)
52 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5.9E-16 2E-20 118.3 8.9 76 4-79 12-91 (102)
53 2kt5_A RNA and export factor-b 99.6 1.3E-15 4.6E-20 120.8 11.1 79 4-82 35-116 (124)
54 1x5u_A Splicing factor 3B subu 99.6 6.6E-16 2.3E-20 118.6 9.0 75 4-78 15-93 (105)
55 1iqt_A AUF1, heterogeneous nuc 99.6 1.4E-16 4.8E-21 115.2 4.9 71 6-76 1-74 (75)
56 2dgw_A Probable RNA-binding pr 99.6 9.7E-16 3.3E-20 115.0 9.4 75 3-78 9-85 (91)
57 2dnq_A RNA-binding protein 4B; 99.6 1.6E-15 5.6E-20 113.7 10.6 72 3-79 7-79 (90)
58 2krb_A Eukaryotic translation 99.6 2.8E-16 9.6E-21 116.0 6.3 71 4-74 1-80 (81)
59 1x4c_A Splicing factor, argini 99.6 1.6E-15 5.5E-20 118.0 10.9 73 3-79 14-92 (108)
60 2div_A TRNA selenocysteine ass 99.6 9E-16 3.1E-20 116.7 9.2 77 3-79 8-93 (99)
61 2do0_A HnRNP M, heterogeneous 99.6 1.7E-15 5.9E-20 117.8 11.0 76 4-79 15-93 (114)
62 2cpi_A CCR4-NOT transcription 99.6 6.3E-16 2.2E-20 121.1 8.4 76 3-78 14-99 (111)
63 2la6_A RNA-binding protein FUS 99.6 9.9E-16 3.4E-20 116.8 9.3 74 4-77 13-98 (99)
64 2dnh_A Bruno-like 5, RNA bindi 99.6 1.8E-15 6.2E-20 116.1 10.7 76 4-79 15-96 (105)
65 2khc_A Testis-specific RNP-typ 99.6 8.7E-16 3E-20 120.5 9.0 74 4-77 40-117 (118)
66 2cqd_A RNA-binding region cont 99.6 1.9E-15 6.5E-20 118.4 10.9 76 4-80 17-96 (116)
67 2nlw_A Eukaryotic translation 99.6 8.1E-16 2.8E-20 119.3 8.6 77 4-80 15-100 (105)
68 2lmi_A GRSF-1, G-rich sequence 99.6 2.4E-16 8.3E-21 122.7 5.7 76 3-78 10-90 (107)
69 2jrs_A RNA-binding protein 39; 99.6 1.1E-15 3.7E-20 119.7 9.4 76 3-78 25-104 (108)
70 2rs2_A Musashi-1, RNA-binding 99.6 1.7E-15 5.9E-20 118.6 10.5 75 4-78 25-102 (109)
71 1oo0_B CG8781-PA, drosophila Y 99.6 1.2E-15 4.1E-20 118.3 9.5 76 3-78 25-104 (110)
72 1x4h_A RNA-binding protein 28; 99.6 1.7E-15 5.7E-20 117.2 10.2 77 3-79 14-100 (111)
73 2cph_A RNA binding motif prote 99.6 1.6E-15 5.3E-20 116.6 9.9 76 4-79 15-96 (107)
74 2ek1_A RNA-binding protein 12; 99.6 6E-16 2.1E-20 116.6 7.4 75 4-78 15-93 (95)
75 2fy1_A RNA-binding motif prote 99.6 1.7E-15 5.8E-20 120.0 10.3 77 3-79 6-85 (116)
76 2ki2_A SS-DNA binding protein 99.6 1.8E-16 6.3E-21 118.5 4.5 77 5-82 2-82 (90)
77 2dgu_A Heterogeneous nuclear r 99.6 1.5E-15 5.2E-20 116.8 9.7 74 1-79 8-82 (103)
78 1x4b_A Heterogeneous nuclear r 99.6 2.1E-15 7.1E-20 118.2 10.5 76 4-79 27-105 (116)
79 1x4e_A RNA binding motif, sing 99.6 3.4E-16 1.1E-20 115.9 5.6 74 3-76 4-81 (85)
80 2hgl_A HNRPF protein, heteroge 99.6 6.5E-16 2.2E-20 127.2 7.8 74 4-77 44-122 (136)
81 2cpj_A Non-POU domain-containi 99.6 1.7E-15 5.9E-20 115.5 9.3 74 3-79 14-88 (99)
82 2dnp_A RNA-binding protein 14; 99.6 2E-15 6.8E-20 113.3 9.3 72 3-79 8-80 (90)
83 1p1t_A Cleavage stimulation fa 99.6 1.4E-15 4.8E-20 116.3 8.6 75 4-78 8-86 (104)
84 1h2v_Z 20 kDa nuclear CAP bind 99.6 2.9E-15 9.8E-20 123.3 11.0 80 2-81 37-120 (156)
85 1wel_A RNA-binding protein 12; 99.6 4.2E-16 1.4E-20 124.1 5.7 76 3-78 24-102 (124)
86 2hzc_A Splicing factor U2AF 65 99.6 1.6E-15 5.3E-20 112.4 8.4 71 3-76 5-86 (87)
87 2ytc_A PRE-mRNA-splicing facto 99.6 2.2E-15 7.6E-20 111.3 9.2 71 4-77 12-84 (85)
88 2j76_E EIF-4B, EIF4B, eukaryot 99.6 6.2E-16 2.1E-20 118.8 6.4 74 4-78 19-96 (100)
89 1x4g_A Nucleolysin TIAR; struc 99.6 3E-15 1E-19 116.2 10.4 73 4-79 25-98 (109)
90 2dgp_A Bruno-like 4, RNA bindi 99.6 1.2E-15 4.1E-20 117.3 8.0 76 4-79 13-95 (106)
91 2jvr_A Nucleolar protein 3; RN 99.6 1E-15 3.5E-20 122.0 7.7 74 4-78 28-103 (111)
92 2hvz_A Splicing factor, argini 99.6 9.7E-16 3.3E-20 117.1 7.2 73 5-79 1-74 (101)
93 1uaw_A Mouse-musashi-1; RNP-ty 99.6 8.9E-16 3E-20 111.2 6.7 72 5-77 1-76 (77)
94 2cpe_A RNA-binding protein EWS 99.6 2.6E-15 9E-20 116.9 9.7 77 3-79 14-102 (113)
95 2cqp_A RNA-binding protein 12; 99.6 1.1E-15 3.7E-20 116.0 7.3 75 4-78 15-93 (98)
96 3n9u_C Cleavage and polyadenyl 99.6 2.2E-15 7.7E-20 126.0 9.8 75 4-78 55-135 (156)
97 2dgt_A RNA-binding protein 30; 99.6 4.3E-15 1.5E-19 111.9 10.4 72 3-79 9-81 (92)
98 2cqg_A TDP-43, TAR DNA-binding 99.6 4.8E-15 1.6E-19 113.6 10.8 76 3-79 14-92 (103)
99 2kn4_A Immunoglobulin G-bindin 99.6 2.4E-15 8.1E-20 123.4 9.5 77 4-80 70-150 (158)
100 2la4_A Nuclear and cytoplasmic 99.6 2.3E-15 7.7E-20 115.0 8.7 71 4-77 27-98 (101)
101 1u6f_A Tcubp1, RNA-binding pro 99.6 3.8E-15 1.3E-19 119.9 10.4 77 4-80 42-122 (139)
102 1sjq_A Polypyrimidine tract-bi 99.6 1.8E-15 6.3E-20 120.1 8.4 72 4-78 16-90 (105)
103 3ex7_B RNA-binding protein 8A; 99.6 2.3E-15 7.8E-20 119.3 8.8 77 3-79 21-101 (126)
104 2cpd_A Apobec-1 stimulating pr 99.6 7E-15 2.4E-19 112.1 11.0 73 2-79 13-88 (99)
105 1why_A Hypothetical protein ri 99.6 3E-15 1E-19 113.7 8.9 72 4-78 17-91 (97)
106 2xnq_A Nuclear polyadenylated 99.6 7.3E-15 2.5E-19 112.7 10.6 71 3-78 21-93 (97)
107 1nu4_A U1A RNA binding domain; 99.6 1.7E-15 6E-20 114.4 7.0 75 4-78 8-87 (97)
108 2wbr_A GW182, gawky, LD47780P; 99.6 2.6E-15 8.8E-20 116.5 8.0 72 3-77 6-78 (89)
109 1whx_A Hypothetical protein ri 99.6 2.4E-15 8.2E-20 118.3 7.9 73 4-79 10-83 (111)
110 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.5E-15 1.2E-19 119.4 9.0 73 4-76 63-139 (140)
111 2dhg_A TRNA selenocysteine ass 99.6 3.5E-15 1.2E-19 114.3 8.5 75 4-78 9-88 (104)
112 2e44_A Insulin-like growth fac 99.6 3.1E-15 1.1E-19 113.1 8.1 75 4-79 15-91 (96)
113 2e5j_A Methenyltetrahydrofolat 99.6 4E-15 1.4E-19 113.3 8.6 73 4-78 19-92 (97)
114 2dha_A FLJ20171 protein; RRM d 99.6 1.3E-15 4.6E-20 123.3 6.2 75 3-77 22-102 (123)
115 2jvo_A Nucleolar protein 3; nu 99.6 6.9E-15 2.4E-19 115.3 10.0 70 4-78 31-101 (108)
116 3md3_A Nuclear and cytoplasmic 99.6 6.3E-15 2.2E-19 118.8 10.0 76 5-80 1-79 (166)
117 1x4d_A Matrin 3; structural ge 99.6 3.2E-15 1.1E-19 117.7 7.9 74 4-80 15-92 (102)
118 2dis_A Unnamed protein product 99.6 5.5E-15 1.9E-19 114.1 9.0 77 3-79 7-91 (109)
119 2kxn_B Transformer-2 protein h 99.6 3.7E-15 1.3E-19 120.6 8.3 75 4-78 46-124 (129)
120 2cq1_A PTB-like protein L; RRM 99.6 9.3E-15 3.2E-19 114.4 10.2 72 4-78 15-89 (101)
121 1wf1_A RNA-binding protein RAL 99.6 6.7E-15 2.3E-19 114.4 9.3 70 4-78 27-98 (110)
122 2xs2_A Deleted in azoospermia- 99.6 3.2E-15 1.1E-19 114.4 7.2 74 4-78 9-84 (102)
123 2kvi_A Nuclear polyadenylated 99.6 4.9E-15 1.7E-19 112.8 8.3 72 3-79 9-82 (96)
124 2ad9_A Polypyrimidine tract-bi 99.6 7.9E-15 2.7E-19 118.7 9.9 73 4-79 31-106 (119)
125 2lea_A Serine/arginine-rich sp 99.6 3.1E-15 1.1E-19 121.8 7.5 77 4-80 47-127 (135)
126 2hgm_A HNRPF protein, heteroge 99.6 3.1E-15 1.1E-19 122.0 7.4 73 4-77 42-118 (126)
127 2i2y_A Fusion protein consists 99.6 3.9E-15 1.3E-19 121.7 7.8 73 4-78 73-146 (150)
128 3r27_A HnRNP L, heterogeneous 99.6 9.9E-15 3.4E-19 115.1 9.4 72 4-78 21-95 (100)
129 1fj7_A Nucleolin RBD1, protein 99.6 1.8E-15 6.1E-20 115.6 4.9 75 3-78 16-93 (101)
130 2a3j_A U1 small nuclear ribonu 99.6 6.7E-15 2.3E-19 119.7 8.5 75 4-78 29-108 (127)
131 1fjc_A Nucleolin RBD2, protein 99.6 4.6E-15 1.6E-19 112.1 6.9 73 4-78 16-89 (96)
132 1wex_A Hypothetical protein (r 99.6 8.9E-15 3E-19 114.9 8.6 73 4-79 15-90 (104)
133 1x5o_A RNA binding motif, sing 99.6 1.6E-14 5.4E-19 112.6 10.0 75 3-77 24-109 (114)
134 2hgn_A Heterogeneous nuclear r 99.6 1.5E-15 5.2E-20 125.5 4.2 74 4-78 46-121 (139)
135 1fxl_A Paraneoplastic encephal 99.6 1.8E-14 6.3E-19 116.1 10.4 76 4-79 2-81 (167)
136 3beg_B Splicing factor, argini 99.6 5E-15 1.7E-19 117.0 6.7 71 4-78 16-92 (115)
137 2voo_A Lupus LA protein; RNA-b 99.5 1.5E-14 5.3E-19 124.5 10.3 79 4-82 109-189 (193)
138 2fc9_A NCL protein; structure 99.5 1.3E-14 4.3E-19 110.9 8.6 74 3-79 14-90 (101)
139 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.7E-14 5.9E-19 120.2 9.9 75 4-78 72-150 (165)
140 1b7f_A Protein (SXL-lethal pro 99.5 2.6E-14 9E-19 115.9 10.6 77 3-79 2-82 (168)
141 1wg1_A KIAA1579 protein, homol 99.5 1.5E-14 5E-19 108.5 8.1 73 3-79 4-77 (88)
142 2cqh_A IGF-II mRNA-binding pro 99.5 1.7E-14 5.7E-19 108.6 8.5 72 4-79 8-82 (93)
143 1l3k_A Heterogeneous nuclear r 99.5 2.3E-14 7.9E-19 119.2 10.2 76 4-79 13-91 (196)
144 2cpx_A Hypothetical protein FL 99.5 2.1E-14 7.1E-19 111.9 9.2 75 4-79 25-104 (115)
145 3q2s_C Cleavage and polyadenyl 99.5 1.4E-14 4.8E-19 128.0 8.8 75 4-78 68-148 (229)
146 3d2w_A TAR DNA-binding protein 99.5 2.8E-14 9.6E-19 108.1 9.1 70 4-78 11-82 (89)
147 4f02_A Polyadenylate-binding p 99.5 2.8E-14 9.6E-19 122.7 10.3 75 4-78 15-93 (213)
148 2m2b_A RNA-binding protein 10; 99.5 3.7E-15 1.3E-19 119.8 4.4 75 4-79 23-107 (131)
149 3egn_A RNA-binding protein 40; 99.5 2E-14 6.9E-19 116.6 8.6 76 4-79 45-129 (143)
150 4f02_A Polyadenylate-binding p 99.5 3.7E-14 1.3E-18 121.9 9.8 75 4-78 103-179 (213)
151 3md3_A Nuclear and cytoplasmic 99.5 6.5E-14 2.2E-18 112.8 10.3 74 4-77 87-164 (166)
152 1x4f_A Matrin 3; structural ge 99.5 1.8E-14 6.1E-19 115.5 6.8 73 4-79 25-101 (112)
153 3nmr_A Cugbp ELAV-like family 99.5 4.1E-14 1.4E-18 115.2 8.8 77 2-78 1-86 (175)
154 2dnl_A Cytoplasmic polyadenyla 99.5 2.4E-14 8.1E-19 112.5 7.1 74 3-77 7-98 (114)
155 1wf0_A TDP-43, TAR DNA-binding 99.5 2.4E-14 8.3E-19 106.9 6.7 74 2-78 3-76 (88)
156 1l3k_A Heterogeneous nuclear r 99.5 6.9E-14 2.4E-18 116.3 10.1 75 4-78 104-181 (196)
157 2yh0_A Splicing factor U2AF 65 99.5 6.4E-14 2.2E-18 116.7 9.7 80 1-83 1-91 (198)
158 2f3j_A RNA and export factor b 99.5 3.7E-14 1.3E-18 120.7 8.4 76 4-79 88-166 (177)
159 2fc8_A NCL protein; structure 99.5 5.4E-14 1.9E-18 107.3 8.5 72 4-78 15-90 (102)
160 2qfj_A FBP-interacting repress 99.5 9.2E-14 3.2E-18 117.2 10.8 76 4-79 125-204 (216)
161 2cjk_A Nuclear polyadenylated 99.5 2.7E-14 9.3E-19 115.9 7.2 75 4-78 87-164 (167)
162 2g4b_A Splicing factor U2AF 65 99.5 6E-14 2.1E-18 114.4 9.2 74 4-77 94-171 (172)
163 1x5p_A Negative elongation fac 99.5 1.3E-13 4.3E-18 104.9 10.3 71 3-78 14-85 (97)
164 2qfj_A FBP-interacting repress 99.5 7E-14 2.4E-18 118.0 9.3 76 4-79 28-107 (216)
165 3tyt_A Heterogeneous nuclear r 99.5 1E-13 3.4E-18 120.2 10.5 75 3-79 3-79 (205)
166 2g4b_A Splicing factor U2AF 65 99.5 1E-13 3.5E-18 113.0 9.7 78 3-83 3-91 (172)
167 2lcw_A RNA-binding protein FUS 99.2 2.4E-15 8.4E-20 118.0 0.0 76 3-78 6-93 (116)
168 2ghp_A U4/U6 snRNA-associated 99.5 1.2E-13 4.2E-18 122.8 9.6 76 4-79 41-117 (292)
169 2cjk_A Nuclear polyadenylated 99.5 9.5E-14 3.2E-18 112.7 8.0 75 3-78 2-79 (167)
170 1qm9_A Polypyrimidine tract-bi 99.5 7.3E-14 2.5E-18 117.3 7.2 74 4-79 3-78 (198)
171 3nmr_A Cugbp ELAV-like family 99.5 1.9E-13 6.5E-18 111.2 9.4 74 4-77 95-174 (175)
172 2yh0_A Splicing factor U2AF 65 99.5 2.3E-13 7.9E-18 113.3 9.7 75 4-78 114-192 (198)
173 2j8a_A Histone-lysine N-methyl 99.4 2E-13 7E-18 113.1 8.4 74 3-76 1-92 (136)
174 1b7f_A Protein (SXL-lethal pro 99.4 3.2E-13 1.1E-17 109.4 9.3 73 4-76 89-167 (168)
175 2adc_A Polypyrimidine tract-bi 99.4 2.1E-13 7.2E-18 118.5 8.4 75 3-79 33-109 (229)
176 2cq2_A Hypothetical protein LO 99.4 1.4E-13 4.9E-18 110.8 6.7 72 4-78 25-104 (114)
177 3pgw_A U1-A; protein-RNA compl 99.4 3.6E-13 1.2E-17 119.2 9.8 76 4-79 9-89 (282)
178 1fje_B Nucleolin RBD12, protei 99.4 3.3E-13 1.1E-17 110.8 8.9 73 4-78 99-172 (175)
179 3pgw_S U1-70K; protein-RNA com 99.4 2.9E-13 9.8E-18 130.3 9.7 76 4-79 102-181 (437)
180 1sjr_A Polypyrimidine tract-bi 99.4 3.8E-13 1.3E-17 114.7 9.2 74 5-79 47-123 (164)
181 3zzy_A Polypyrimidine tract-bi 99.4 8.6E-13 3E-17 108.5 10.6 72 5-78 29-104 (130)
182 2e5i_A Heterogeneous nuclear r 99.4 9.7E-13 3.3E-17 107.1 10.6 71 5-78 26-100 (124)
183 1fxl_A Paraneoplastic encephal 99.4 7.4E-13 2.5E-17 106.7 9.2 73 4-76 88-166 (167)
184 3sde_A Paraspeckle component 1 99.4 6.9E-13 2.4E-17 117.5 9.7 73 3-78 21-94 (261)
185 2bz2_A Negative elongation fac 99.4 8.4E-13 2.9E-17 105.7 8.9 71 3-78 38-109 (121)
186 2diu_A KIAA0430 protein; struc 99.4 9.2E-13 3.1E-17 103.5 8.7 68 5-79 9-83 (96)
187 1fje_B Nucleolin RBD12, protei 99.4 2.2E-13 7.6E-18 111.8 5.3 77 3-79 12-90 (175)
188 2ghp_A U4/U6 snRNA-associated 99.4 7.3E-13 2.5E-17 117.7 9.0 76 3-78 209-289 (292)
189 3u1l_A PRE-mRNA-splicing facto 99.4 9E-13 3.1E-17 118.4 9.2 75 2-79 132-228 (240)
190 2dit_A HIV TAT specific factor 99.4 2.9E-12 1E-16 100.3 11.0 75 3-78 14-100 (112)
191 2pe8_A Splicing factor 45; RRM 99.4 2.9E-12 1E-16 100.6 11.0 76 3-78 7-92 (105)
192 3pgw_A U1-A; protein-RNA compl 99.4 1.4E-12 4.8E-17 115.4 9.7 72 4-77 207-280 (282)
193 3smz_A Protein raver-1, ribonu 99.3 3.1E-12 1.1E-16 113.2 9.9 74 4-77 184-261 (284)
194 3smz_A Protein raver-1, ribonu 99.3 4.3E-12 1.5E-16 112.3 10.0 76 4-79 95-174 (284)
195 1qm9_A Polypyrimidine tract-bi 99.3 2.1E-12 7.2E-17 108.3 7.1 72 4-77 120-194 (198)
196 3tyt_A Heterogeneous nuclear r 99.3 2.4E-12 8.1E-17 111.5 6.8 67 4-70 123-193 (205)
197 2adc_A Polypyrimidine tract-bi 99.3 6.7E-12 2.3E-16 108.9 9.4 73 4-78 151-226 (229)
198 3sde_A Paraspeckle component 1 99.3 7.6E-12 2.6E-16 110.8 8.7 77 4-80 96-179 (261)
199 1jmt_A Splicing factor U2AF 35 99.2 8.6E-12 2.9E-16 97.6 4.7 69 9-77 20-103 (104)
200 3v4m_A Splicing factor U2AF 65 99.2 5.8E-11 2E-15 93.1 8.0 74 4-77 5-94 (105)
201 3ue2_A Poly(U)-binding-splicin 99.1 1.8E-10 6.2E-15 92.5 9.6 74 4-77 20-106 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.1 9.2E-10 3.2E-14 86.0 11.1 71 5-78 11-88 (100)
203 1owx_A Lupus LA protein, SS-B, 99.0 6.6E-10 2.2E-14 90.4 8.7 73 2-77 16-93 (121)
204 3tht_A Alkylated DNA repair pr 99.0 4E-10 1.4E-14 106.0 8.0 71 4-77 18-96 (345)
205 3s6e_A RNA-binding protein 39; 99.0 1.2E-09 4.1E-14 87.3 8.7 73 4-77 7-90 (114)
206 2dnr_A Synaptojanin-1; RRM dom 98.9 5.2E-09 1.8E-13 81.3 7.7 69 5-78 8-84 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.7 1.5E-08 5E-13 79.4 6.6 68 5-77 16-92 (95)
208 3dxb_A Thioredoxin N-terminall 98.4 8.4E-07 2.9E-11 76.3 7.8 63 16-78 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.3 1.6E-06 5.4E-11 69.8 7.9 72 3-77 20-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.0 3.5E-05 1.2E-09 61.1 9.8 70 4-78 8-82 (104)
211 1wwh_A Nucleoporin 35, nucleop 97.8 0.00011 3.9E-09 59.4 10.1 72 4-79 24-96 (119)
212 3p3d_A Nucleoporin 53; structu 97.0 0.00077 2.6E-08 55.5 5.5 74 4-78 7-97 (132)
213 1wey_A Calcipressin 1; structu 96.8 0.0036 1.2E-07 49.5 7.3 72 4-78 5-82 (104)
214 1uw4_A UPF3X; nonsense mediate 96.6 0.011 3.6E-07 45.5 8.3 66 5-70 2-73 (91)
215 3pq1_A Poly(A) RNA polymerase; 96.3 0.002 6.7E-08 62.8 3.5 64 4-70 53-116 (464)
216 1whv_A Poly(A)-specific ribonu 94.6 0.06 2E-06 42.2 5.7 50 7-61 18-67 (100)
217 3ctr_A Poly(A)-specific ribonu 94.6 0.065 2.2E-06 42.1 5.8 52 7-63 8-60 (101)
218 2l08_A Regulator of nonsense t 93.0 0.088 3E-06 41.0 4.0 66 5-70 10-81 (97)
219 2kn4_A Immunoglobulin G-bindin 87.5 0.5 1.7E-05 37.5 4.0 40 33-72 2-43 (158)
220 2i2y_A Fusion protein consists 84.6 0.67 2.3E-05 36.7 3.3 42 36-78 5-49 (150)
221 3d45_A Poly(A)-specific ribonu 80.0 3.7 0.00013 39.9 7.2 53 5-63 441-494 (507)
222 4e8u_A Putative uncharacterize 65.5 12 0.0004 31.8 6.0 59 6-64 14-84 (172)
223 3j21_T 50S ribosomal protein L 53.8 23 0.00078 26.6 5.2 51 6-56 24-76 (86)
224 3ezj_A General secretion pathw 47.6 5.1 0.00017 34.6 0.7 68 12-79 9-86 (241)
225 1vq8_S 50S ribosomal protein L 41.4 44 0.0015 24.9 5.0 50 6-55 23-74 (85)
226 4ar0_A Type IV pilus biogenesi 29.0 28 0.00097 27.5 2.3 63 15-77 37-104 (128)
227 3u5e_X 60S ribosomal protein L 27.9 1.1E+02 0.0039 24.9 5.8 55 6-60 80-137 (142)
228 4a17_R RPL23A, 60S ribosomal p 26.6 71 0.0024 26.4 4.4 55 6-60 88-145 (150)
229 2g0c_A ATP-dependent RNA helic 25.2 27 0.00093 24.4 1.4 58 14-77 11-74 (76)
230 3iz5_X 60S ribosomal protein L 23.5 72 0.0025 26.4 3.8 54 6-59 90-146 (152)
231 2zkr_s 60S ribosomal protein L 23.4 1.2E+02 0.0041 25.2 5.2 54 6-59 94-150 (156)
232 3fry_A Probable copper-exporti 23.0 1.7E+02 0.0057 19.2 6.2 58 5-66 7-64 (73)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=129.31 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=69.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
++++|||+|||+.+|+++|+++|+.||+|.+|+|.++.. .+|+|||+|.++++|+.|+ .|||..|+|++|+|..+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 468999999999999999999999999999999998863 4689999999999999999 59999999999999875
No 2
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=5e-17 Score=120.92 Aligned_cols=76 Identities=22% Similarity=0.387 Sum_probs=70.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+++++|+++|+.||+|.+|.+..+. ..+++|||+|.++++++.|+.|||..|.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 5899999999999999999999999999999999875 247899999999999999999999999999999998643
No 3
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.70 E-value=4e-17 Score=128.83 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=70.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~-~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
..+|||+|||+.+|+++|+++|+.||+|.+|+|+.+.+ ++|+|||+|+++++|+.|+ .|||..|+|+.|.|..+..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 46899999999999999999999999999999998874 4689999999999999999 6999999999999998753
No 4
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.69 E-value=1e-16 Score=119.25 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=69.2
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a 77 (266)
..++|||+|||+.+++++|+++|+.||+|.+|.|+.+.. .+|+|||+|.++++++.|+.++|..|+|+.|.|..+
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 358999999999999999999999999999999998852 368999999999999999999999999999999763
No 5
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-17 Score=129.40 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=71.0
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
+.++|||+|||+.+|+++|+++|+.||+|.+|+|+.+. .++|+|||+|+++++|+.||.+||..|+|+.|.|....+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 35899999999999999999999999999999999876 357899999999999999999999999999999987543
No 6
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=122.29 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=72.0
Q ss_pred CCccEEEEeCCCCcccHHHHH----HHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEe
Q 024507 2 QQTRTVQVKNVSDLAHEREIH----EFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITP 76 (266)
Q Consensus 2 ~~~~TV~V~NLs~~~Te~dL~----efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~ 76 (266)
.+.++|||+|||+.+++++|+ ++|+.||+|.+|+|..+...+++|||+|+++++|+.|+. |||..|+|+.|+|..
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356899999999999999999 999999999999999887558899999999999999995 999999999999998
Q ss_pred CCC
Q 024507 77 AEN 79 (266)
Q Consensus 77 a~~ 79 (266)
+..
T Consensus 87 a~~ 89 (96)
T 2dgx_A 87 ATG 89 (96)
T ss_dssp CCC
T ss_pred cCC
Confidence 743
No 7
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.2e-16 Score=120.18 Aligned_cols=77 Identities=21% Similarity=0.355 Sum_probs=71.0
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~-~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ..+++|||+|.++++|+.|+. |||..|+|+.|.|..+..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 35899999999999999999999999999999999886 357899999999999999995 999999999999998654
No 8
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=1.2e-16 Score=117.94 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=69.4
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+.. .+++|||+|.++++|+.|+ .|||..|+|+.|+|..+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 468999999999999999999999999999999988752 4789999999999999999 69999999999999865
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.5e-16 Score=119.99 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=70.7
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+.. .+++|||+|.++++|+.|+.|||..|+|+.|.|..+.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 358999999999999999999999999999999998752 5789999999999999999999999999999999864
No 10
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=2e-16 Score=116.26 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=69.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
+++|||+|||+.+++++|+++|+.||+|.+|.+..+. ...++|||+|.++++|+.|+. |||..|+|++|.|..+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 3689999999999999999999999999999999885 246899999999999999995 99999999999998764
No 11
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=119.67 Aligned_cols=75 Identities=23% Similarity=0.402 Sum_probs=69.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~--~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. .+++|||+|.++++|+.|+. |||..|+|+.|.|..+.
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 58999999999999999999999999999999998763 46899999999999999995 99999999999998764
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=117.51 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=69.3
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+.. .+++|||+|.++++|+.|+. |||..|+|+.|.|..+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 468999999999999999999999999999999998752 46899999999999999995 99999999999998753
No 13
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=125.18 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++|||+||++.+++++|+++|+.||+|.+|.|+.+.. ++|+|||+|+++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 58999999999999999999999999999999998863 4689999999999999999 599999999999998763
No 14
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=117.12 Aligned_cols=74 Identities=26% Similarity=0.345 Sum_probs=69.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC----CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG----QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~----~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a 77 (266)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|+.|+. |||..|+|+.|.|..+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 47999999999999999999999999999999998863 57899999999999999995 9999999999999976
No 15
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.68 E-value=1.7e-16 Score=118.97 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=71.1
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~-~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~~ 80 (266)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+.+ .+++|||+|.++++|+.|+. |||..|+|+.|.|..+...
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 468999999999999999999999999999999998653 46899999999999999995 9999999999999986543
No 16
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.67 E-value=3.6e-17 Score=123.31 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=65.9
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCC--ceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSG--DIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG--~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.+|||+|||+.+|+++|+++|+.|| +|.+|+|..+.. .+|+|||+|.++++|+.|+ .|||..|+|+.|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999999999852 4689999999999999999 699999999999998765
Q ss_pred C
Q 024507 79 N 79 (266)
Q Consensus 79 ~ 79 (266)
.
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 17
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.7e-16 Score=121.97 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=71.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+...+++|||+|+++++|+.|+ .|||..|.|+.|.|..+..
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 579999999999999999999999999999999877667899999999999999999 7999999999999987654
No 18
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.7e-16 Score=119.54 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=71.0
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ..+++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35899999999999999999999999999999999875 24689999999999999999 799999999999999875
Q ss_pred C
Q 024507 79 N 79 (266)
Q Consensus 79 ~ 79 (266)
.
T Consensus 87 ~ 87 (99)
T 1whw_A 87 I 87 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 19
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=6.2e-17 Score=117.26 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=66.9
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeC
Q 024507 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a 77 (266)
+|||+|||+.+++++|+++|+.||+|.+|.+..++ .++|+|||+|.++++++.|+.|||..|+|++|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999875 2468999999999999999999999999999999753
No 20
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=119.15 Aligned_cols=77 Identities=22% Similarity=0.300 Sum_probs=70.5
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC------CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEE
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG------QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSIT 75 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~------~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~ 75 (266)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. .+++|||+|.++++|+.|+. |||..|+|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 568999999999999999999999999999999998653 35799999999999999995 99999999999999
Q ss_pred eCCC
Q 024507 76 PAEN 79 (266)
Q Consensus 76 ~a~~ 79 (266)
.+..
T Consensus 84 ~a~~ 87 (98)
T 2cpf_A 84 ISER 87 (98)
T ss_dssp CSSC
T ss_pred EccC
Confidence 8754
No 21
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.1e-16 Score=120.31 Aligned_cols=76 Identities=26% Similarity=0.330 Sum_probs=70.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~-~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. .+++|||+|.++++|+.|+. |||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 58999999999999999999999999999999998863 46899999999999999995 999999999999998654
No 22
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=4.6e-16 Score=121.51 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=72.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+++++|+++|+.||.|.+|.|..+.. .+++|||+|.++++|+.|| .|||..|+|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 468999999999999999999999999999999998752 3689999999999999999 599999999999999986
Q ss_pred CCCCC
Q 024507 79 NYVPK 83 (266)
Q Consensus 79 ~~~~~ 83 (266)
.-..+
T Consensus 94 ~~~~~ 98 (115)
T 2dgo_A 94 RKPPA 98 (115)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 54443
No 23
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.8e-16 Score=117.13 Aligned_cols=77 Identities=18% Similarity=0.283 Sum_probs=70.9
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+. ...++|||+|+++++|+.|+. |||..|+|+.|+|..+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 46899999999999999999999999999999999875 246899999999999999995 99999999999999864
Q ss_pred C
Q 024507 79 N 79 (266)
Q Consensus 79 ~ 79 (266)
.
T Consensus 84 ~ 84 (95)
T 2dnz_A 84 E 84 (95)
T ss_dssp C
T ss_pred c
Confidence 3
No 24
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=118.28 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=70.7
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEE-EEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERI-EILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I-~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a 77 (266)
..++|||+|||+.+|+++|+++|+.||+|.+| .|..+. ..+++|||+|+++++|+.|+. |||..|.|++|.|..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999999 998874 246899999999999999996 9999999999999986
Q ss_pred CC
Q 024507 78 EN 79 (266)
Q Consensus 78 ~~ 79 (266)
..
T Consensus 84 ~~ 85 (96)
T 1x5t_A 84 FK 85 (96)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 25
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=2.1e-16 Score=125.55 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCc---eeEEEEEecCC--CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGD---IERIEILREYG--QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~---I~~I~l~~d~~--~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|++||+.||. |.+|+|+.+.. .+|+|||+|.++++++.||.|||..|+|+.|.|..+.
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSH 96 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 579999999999999999999999999 89999998763 4689999999999999999999999999999998763
No 26
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.8e-16 Score=117.45 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=69.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. .+++|||+|+++++|+.|+. |||..|+|+.|.|..+.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 57999999999999999999999999999999998863 36799999999999999995 99999999999998764
No 27
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.5e-16 Score=117.05 Aligned_cols=74 Identities=18% Similarity=0.323 Sum_probs=68.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. .+++|||+|.++++|+.|+ .|||..|.|+.|+|..+
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 57999999999999999999999999999999998753 4689999999999999999 69999999999999864
No 28
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.6e-16 Score=118.44 Aligned_cols=77 Identities=25% Similarity=0.369 Sum_probs=70.5
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+. ..+++|||+|.++++|+.|+. |||..|+|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 46899999999999999999999999999999999875 246899999999999999995 99999999999999864
Q ss_pred C
Q 024507 79 N 79 (266)
Q Consensus 79 ~ 79 (266)
.
T Consensus 94 ~ 94 (103)
T 2cq0_A 94 P 94 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 29
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=119.64 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=70.9
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+.. .+++|||+|.++++|+.|+. |||..|+|+.|.|..+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 468999999999999999999999999999999998752 46899999999999999996 99999999999999875
Q ss_pred C
Q 024507 79 N 79 (266)
Q Consensus 79 ~ 79 (266)
.
T Consensus 92 ~ 92 (103)
T 2dnm_A 92 Y 92 (103)
T ss_dssp S
T ss_pred c
Confidence 4
No 30
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.7e-16 Score=119.65 Aligned_cols=75 Identities=23% Similarity=0.289 Sum_probs=69.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC----CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG----QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~----~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|++||+.|| |.+|.|..+.. .+++|||+|.++++|+.||.|||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccC
Confidence 57999999999999999999999999 99999998853 36899999999999999999999999999999998643
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=121.77 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=67.7
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCc--eeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCC----eecCeeEEE
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGD--IERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGA----TIVDQIVSI 74 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~--I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~----~l~g~~I~V 74 (266)
.||||+|||+.+|+++|+++|+.||. |.+|+|++|+. ++|||||+|.++++|+.|+ .|||. .|+||+|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 69999999999999999999999995 67999998862 4689999999999999999 69997 499999999
Q ss_pred EeCCC
Q 024507 75 TPAEN 79 (266)
Q Consensus 75 ~~a~~ 79 (266)
..+.+
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 98754
No 32
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.9e-16 Score=118.33 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=70.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~-~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+.+ ..++|||+|.++++|+.|+. |||..|.|+.|.|..+..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 468999999999999999999999999999999998743 36899999999999999995 999999999999998754
No 33
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=122.48 Aligned_cols=75 Identities=20% Similarity=0.162 Sum_probs=68.1
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
+.++|||+|||+.+||++|++||+.|| |.+|+|+.+. ..+++|||+|+++++|+.||.+|+..|+||.|.|..+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 357999999999999999999999999 5599999886 24689999999999999999999999999999998754
No 34
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=123.78 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=68.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|++||+.| .|.+|.|+.+. ..+|+|||+|+++++|+.||.|||..|+||.|.|.++.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 89999999876 35789999999999999999999999999999998863
No 35
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.1e-16 Score=117.67 Aligned_cols=75 Identities=13% Similarity=0.308 Sum_probs=69.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ..+++|||+|.++++|+.|+ .|||..|+|+.|.|..+.
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5799999999999999999999999999999999886 23589999999999999999 799999999999998753
No 36
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=119.73 Aligned_cols=77 Identities=18% Similarity=0.322 Sum_probs=70.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
+.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. .+++|||+|.++++|+.|+ .|||..|+|+.|+|..+.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999998752 4689999999999999999 799999999999999864
Q ss_pred C
Q 024507 79 N 79 (266)
Q Consensus 79 ~ 79 (266)
.
T Consensus 91 ~ 91 (102)
T 1x5s_A 91 K 91 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 37
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=5.2e-16 Score=121.21 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=70.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a 77 (266)
..++|||+|||+.+|+++|+++|+.||.|.+|.|..++...++|||+|.++++|..|+. |||..|+|+.|.|..+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 35899999999999999999999999999999999887778999999999999999995 9999999999999875
No 38
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=6.4e-16 Score=117.31 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=70.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+++++|+++|+.||.|.+|.|..+. ..+++|||+|.++++|+.|+ .|||..|+|+.|.|..+..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4799999999999999999999999999999999875 24789999999999999999 6999999999999998654
No 39
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1e-15 Score=117.63 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=69.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+++++|++||+.|| |.+|+|..+.. .+++|||+|+++++|+.||.|||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecC
Confidence 57999999999999999999999997 99999998863 36899999999999999999999999999999998653
No 40
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=120.81 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=68.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE-EEEEecC--CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER-IEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~-I~l~~d~--~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|++||+.||.|.+ |.|+.+. ..+|+|||+|.++++|+.||.+||..|+||.|.|.++.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 579999999999999999999999999997 9888774 34789999999999999999889999999999998764
No 41
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.65 E-value=3e-16 Score=120.94 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=69.5
Q ss_pred ccEEEEeCCCC------cccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecC-eeE
Q 024507 4 TRTVQVKNVSD------LAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVD-QIV 72 (266)
Q Consensus 4 ~~TV~V~NLs~------~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g-~~I 72 (266)
.++|||+|||+ .+++++|+++|+.||+|.+|+|+.+.. ++|+|||+|.++++|+.|+ .|||..|+| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 58999999999 999999999999999999999998873 4689999999999999999 599999999 999
Q ss_pred EEEeC
Q 024507 73 SITPA 77 (266)
Q Consensus 73 ~V~~a 77 (266)
.|..+
T Consensus 86 ~V~~a 90 (100)
T 3ns6_A 86 FLYTM 90 (100)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99875
No 42
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.1e-16 Score=121.87 Aligned_cols=74 Identities=20% Similarity=0.436 Sum_probs=69.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a 77 (266)
.++|||+|||+.+++++|++||+.||.|.+|.|..+.. .+++|||+|.++++|+.||.|||..|+|+.|.|..+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 47999999999999999999999999999999998763 468999999999999999999999999999999875
No 43
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.3e-16 Score=121.31 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=70.3
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~-~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+.+ .+++|||+|.++++|+.|+. |||..|+|+.|.|..+.
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 358999999999999999999999999999999998863 57899999999999999995 99999999999998764
No 44
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3e-16 Score=123.42 Aligned_cols=76 Identities=11% Similarity=0.087 Sum_probs=70.1
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCce-eEEEEEecC--CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDI-ERIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I-~~I~l~~d~--~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
+.++|||+|||+.+|+++|++||+.||.| .+|.|+.+. ..+++|||+|.++++|+.||.+||..|+|+.|.|..+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 92 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECC
Confidence 35899999999999999999999999999 899999876 24789999999999999999889999999999998864
No 45
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.64 E-value=7.8e-16 Score=118.57 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=69.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...++|||+|.++++|+.|+. |||..|.|+.|.|..+.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 35799999999999999999999999999999999886 236799999999999999995 99999999999998753
No 46
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.7e-16 Score=119.60 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=69.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|+.|+. |||..|+|+.|.|..+.
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 57899999999999999999999999999999998853 36899999999999999995 99999999999998764
No 47
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=120.67 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=66.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCC-ceeEEEEEecC---CCCcEEEEEecChHHHHHHHH-h-cCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSG-DIERIEILREY---GQSKTAFVTFKDAKALEIALL-L-SGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG-~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-L-ng~~l~g~~I~V~~a 77 (266)
+++|||+|||+.+||++|+++|+.|| +|.+|+|++++ .++|+|||+|.++++|+.||. | |+..|+|++|.|..+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36999999999999999999999999 89999999875 357899999999999999994 5 556799999999865
No 48
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=120.61 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=69.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. .+++|||+|+++++|+.||.+||..|+|+.|.|..+..
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~ 94 (105)
T 2dh8_A 16 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTP 94 (105)
T ss_dssp SSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccC
Confidence 58999999999999999999999999999999999852 35899999999999999997799999999999987653
No 49
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.9e-16 Score=116.03 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=65.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
..++|||+|||+.+|+++|+++|+.||+|.+| ..+....++|||+|.++++++.|+.|||..|+|+.|.|..+..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 35799999999999999999999999999998 3333222399999999999999999999999999999987643
No 50
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=6.8e-16 Score=122.06 Aligned_cols=75 Identities=23% Similarity=0.407 Sum_probs=70.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|++||+.||+|.+|.|..+. ..+++|||+|.++++++.|+.|||..|+|+.|.|..+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4799999999999999999999999999999999874 24689999999999999999999999999999999865
No 51
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=8.1e-16 Score=120.33 Aligned_cols=76 Identities=9% Similarity=0.203 Sum_probs=70.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+++++|+++|+.||+|.+|+|..+.. .+++|||+|.++++|+.|+ .|||..|.|+.|+|..+..
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 47999999999999999999999999999999998762 3589999999999999999 7999999999999997643
No 52
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.9e-16 Score=118.29 Aligned_cols=76 Identities=22% Similarity=0.360 Sum_probs=70.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...++|||+|.++++|+.|+ .|||..|+|+.|.|..+..
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 5899999999999999999999999999999998874 35789999999999999999 6999999999999998643
No 53
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=1.3e-15 Score=120.76 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=71.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAENY 80 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~~ 80 (266)
.++|||+||++.+++++|+++|+.||+|.+|.|..+. ..+++|||+|.+.++|+.|+. |||..|+|+.|.|..+...
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 5799999999999999999999999999999999875 246899999999999999996 9999999999999987654
Q ss_pred CC
Q 024507 81 VP 82 (266)
Q Consensus 81 ~~ 82 (266)
..
T Consensus 115 ~~ 116 (124)
T 2kt5_A 115 ID 116 (124)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 54
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.6e-16 Score=118.58 Aligned_cols=75 Identities=16% Similarity=0.258 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ..+++|||+|.++++|+.|+. |||..|+|+.|.|..+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 5899999999999999999999999999999999875 246899999999999999995 99999999999999864
No 55
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=1.4e-16 Score=115.18 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=66.4
Q ss_pred EEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEe
Q 024507 6 TVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITP 76 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~ 76 (266)
+|||+|||+.+|+++|+++|+.||+|.+|.+..+. ..+++|||+|.++++++.|+.++|..|+|+.|.|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 68999999999999999999999999999998875 247899999999999999999999999999999875
No 56
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.7e-16 Score=115.02 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=69.1
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+|+++|++||+.| .|.+|+|+.+. ..+++|||+|.++++++.||.|||..|+|+.|.|..+.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 35899999999999999999999999 99999999884 24689999999999999999999999999999998864
No 57
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=113.75 Aligned_cols=72 Identities=22% Similarity=0.311 Sum_probs=67.4
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
..++|||+|||+.+|+++|+++|+.||+|.+|.|. +++|||+|.++++|+.|+ .|||..|.|+.|.|..+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 35899999999999999999999999999999998 579999999999999999 6999999999999998654
No 58
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=116.01 Aligned_cols=71 Identities=21% Similarity=0.243 Sum_probs=64.7
Q ss_pred ccEEEEeCCCCcc------cHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEecChHHHHHHHH-hcCCeecCe-eEEE
Q 024507 4 TRTVQVKNVSDLA------HEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIALL-LSGATIVDQ-IVSI 74 (266)
Q Consensus 4 ~~TV~V~NLs~~~------Te~dL~efFs~cG~I~~I~l~~d~~-~~~~AyVtF~~~~aa~tALl-Lng~~l~g~-~I~V 74 (266)
.++|||+|||+.+ |+++|+++|+.||+|.+|.|.++.+ ++|+|||+|.++++|+.|+. |||..|+|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3799999999999 8899999999999999999985443 47899999999999999995 999999999 8876
No 59
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=117.99 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=68.2
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecC-----eeEEEEe
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVD-----QIVSITP 76 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g-----~~I~V~~ 76 (266)
..++|||+|||+.+|+++|++||+.||+|.+|.|..+ ++|||+|.++++|+.||. |||..|.| +.|.|..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 3579999999999999999999999999999999876 799999999999999995 99999999 9999998
Q ss_pred CCC
Q 024507 77 AEN 79 (266)
Q Consensus 77 a~~ 79 (266)
+..
T Consensus 90 a~~ 92 (108)
T 1x4c_A 90 DGP 92 (108)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 60
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9e-16 Score=116.66 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=70.0
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCcee-EEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecCee----EE
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIE-RIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQI----VS 73 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~-~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~----I~ 73 (266)
..++|||+|||+.+++++|+++|+.||+|. +|+|..+.. ..++|||+|.++++|+.|+. |||..|.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 358999999999999999999999999999 999998862 45899999999999999996 9999999999 99
Q ss_pred EEeCCC
Q 024507 74 ITPAEN 79 (266)
Q Consensus 74 V~~a~~ 79 (266)
|..+..
T Consensus 88 v~~a~~ 93 (99)
T 2div_A 88 LNYATY 93 (99)
T ss_dssp EEETTC
T ss_pred EeecCC
Confidence 987643
No 61
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-15 Score=117.84 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=70.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~--~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. .+++|||+|.++++|+.|+. |||..|+|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 57999999999999999999999999999999998763 36899999999999999995 999999999999998654
No 62
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.3e-16 Score=121.06 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=69.2
Q ss_pred CccEEEEeCCCCcccHHHHH---HHcccCCceeEEEEEecCC------CCcEEEEEecChHHHHHHHH-hcCCeecCeeE
Q 024507 3 QTRTVQVKNVSDLAHEREIH---EFFSFSGDIERIEILREYG------QSKTAFVTFKDAKALEIALL-LSGATIVDQIV 72 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~---efFs~cG~I~~I~l~~d~~------~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I 72 (266)
..++|||+|||+.+++++|+ ++|+.||+|.+|.|..+.. .+++|||+|+++++|+.|+. |||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 35799999999999999999 9999999999999988753 24799999999999999995 89999999999
Q ss_pred EEEeCC
Q 024507 73 SITPAE 78 (266)
Q Consensus 73 ~V~~a~ 78 (266)
.|..+.
T Consensus 94 ~V~~a~ 99 (111)
T 2cpi_A 94 KASLGT 99 (111)
T ss_dssp EEESCC
T ss_pred EEEecc
Confidence 998764
No 63
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=9.9e-16 Score=116.85 Aligned_cols=74 Identities=18% Similarity=0.313 Sum_probs=68.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE--------EEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCee
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER--------IEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQI 71 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~--------I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~ 71 (266)
.++|||+|||+.+|+++|+++|+.||.|.+ |+|..+.. .+|+|||+|.++++++.|+ .|||..|+|+.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 579999999999999999999999999999 99998852 3689999999999999999 59999999999
Q ss_pred EEEEeC
Q 024507 72 VSITPA 77 (266)
Q Consensus 72 I~V~~a 77 (266)
|+|..+
T Consensus 93 l~V~~A 98 (99)
T 2la6_A 93 IKVSFA 98 (99)
T ss_dssp CEEEEC
T ss_pred EEEEec
Confidence 999865
No 64
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.63 E-value=1.8e-15 Score=116.11 Aligned_cols=76 Identities=21% Similarity=0.317 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEecChHHHHHHH-HhcCCeecC---eeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGATIVD---QIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~--~~~~AyVtF~~~~aa~tAL-lLng~~l~g---~~I~V~~a 77 (266)
.++|||+|||+.+++++|+++|+.||.|.+|.|..+.. .+++|||+|.++++|+.|+ .|||..|.| +.|.|..+
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a 94 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 94 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence 58999999999999999999999999999999998862 3689999999999999999 599999998 99999986
Q ss_pred CC
Q 024507 78 EN 79 (266)
Q Consensus 78 ~~ 79 (266)
..
T Consensus 95 ~~ 96 (105)
T 2dnh_A 95 DT 96 (105)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 65
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.63 E-value=8.7e-16 Score=120.45 Aligned_cols=74 Identities=9% Similarity=0.197 Sum_probs=68.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a 77 (266)
.++|||+|||+.+++++|+++|+.||+|.+|+|..+. ..+++|||+|.++++++.|+. |||..|+|+.|+|..+
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 5899999999999999999999999999999999875 347899999999999999995 9999999999999864
No 66
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=118.40 Aligned_cols=76 Identities=20% Similarity=0.180 Sum_probs=69.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|+|..+. ..+++|||+|.++++|+.||. ||+ .|.|+.|.|..+..
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence 5899999999999999999999999999999999875 246899999999999999994 777 99999999998764
Q ss_pred C
Q 024507 80 Y 80 (266)
Q Consensus 80 ~ 80 (266)
.
T Consensus 96 ~ 96 (116)
T 2cqd_A 96 G 96 (116)
T ss_dssp T
T ss_pred C
Confidence 3
No 67
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=8.1e-16 Score=119.31 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcc------cHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEecChHHHHHHHH-hcCCeecCe-eEEE
Q 024507 4 TRTVQVKNVSDLA------HEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIALL-LSGATIVDQ-IVSI 74 (266)
Q Consensus 4 ~~TV~V~NLs~~~------Te~dL~efFs~cG~I~~I~l~~d~~-~~~~AyVtF~~~~aa~tALl-Lng~~l~g~-~I~V 74 (266)
.++|||+|||+.+ |+++|+++|+.||+|.+|.|.+..+ ++|+|||+|.++++|..|+. |||..|+|+ .|.|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V 94 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 94 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence 5799999999999 8999999999999999999985443 47899999999999999995 999999999 9999
Q ss_pred EeCCCC
Q 024507 75 TPAENY 80 (266)
Q Consensus 75 ~~a~~~ 80 (266)
..+.+.
T Consensus 95 ~~a~~~ 100 (105)
T 2nlw_A 95 NLFTDF 100 (105)
T ss_dssp ECSCCC
T ss_pred EEcchH
Confidence 987654
No 68
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=2.4e-16 Score=122.68 Aligned_cols=76 Identities=12% Similarity=0.121 Sum_probs=70.0
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCc---eeEEEEEecC--CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGD---IERIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~---I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a 77 (266)
+.++|||+|||+.+|+++|++||+.||. |.+|+|..+. ..+|+|||+|.++++++.||.|||..|+|+.|.|..+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 89 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEI 89 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEEC
Confidence 4589999999999999999999999998 9999999876 3578999999999999999999999999999999875
Q ss_pred C
Q 024507 78 E 78 (266)
Q Consensus 78 ~ 78 (266)
.
T Consensus 90 ~ 90 (107)
T 2lmi_A 90 N 90 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 69
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=119.69 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=69.9
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+.. .+|+|||+|.++++|+.|+ .|||..|+|+.|+|..+.
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 358999999999999999999999999999999998853 3689999999999999999 599999999999998754
No 70
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.62 E-value=1.7e-15 Score=118.55 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=68.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|+|..+. ..+|+|||+|.++++++.|+..+|..|+|+.|.|..+.
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 5899999999999999999999999999999999875 34789999999999999999877899999999998864
No 71
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=1.2e-15 Score=118.30 Aligned_cols=76 Identities=25% Similarity=0.264 Sum_probs=69.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...++|||+|.++++|+.|+. |||..|+|+.|.|..+.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 35789999999999999999999999999999998875 246899999999999999995 99999999999998753
No 72
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=117.19 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=70.3
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-Hhc------CCeecCeeE
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLS------GATIVDQIV 72 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLn------g~~l~g~~I 72 (266)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. .+++|||+|.+.++|+.|+ .|| |..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l 93 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQL 93 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEE
Confidence 357999999999999999999999999999999998752 5789999999999999999 599 999999999
Q ss_pred EEEeCCC
Q 024507 73 SITPAEN 79 (266)
Q Consensus 73 ~V~~a~~ 79 (266)
.|..+..
T Consensus 94 ~v~~a~~ 100 (111)
T 1x4h_A 94 KVDLAVT 100 (111)
T ss_dssp EEECCCC
T ss_pred EEEECCC
Confidence 9987643
No 73
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=116.65 Aligned_cols=76 Identities=22% Similarity=0.370 Sum_probs=69.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEec-C---CCCcEEEEEecChHHHHHHH-Hh-cCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILRE-Y---GQSKTAFVTFKDAKALEIAL-LL-SGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d-~---~~~~~AyVtF~~~~aa~tAL-lL-ng~~l~g~~I~V~~a 77 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+ . ..+++|||+|.++++|+.|+ .| ||..|.|+.|.|..+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a 94 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 94 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeC
Confidence 579999999999999999999999999999999887 3 24789999999999999999 58 999999999999986
Q ss_pred CC
Q 024507 78 EN 79 (266)
Q Consensus 78 ~~ 79 (266)
..
T Consensus 95 ~~ 96 (107)
T 2cph_A 95 DS 96 (107)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 74
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.62 E-value=6e-16 Score=116.59 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=68.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|++||+.||.|.++.++.++. .+++|||+|.++++|+.|+. |||..|+|+.|+|..+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 47999999999999999999999999999988887653 36899999999999999995 99999999999998753
No 75
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=119.99 Aligned_cols=77 Identities=14% Similarity=0.320 Sum_probs=70.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
..++|||+|||+.+|+++|+++|+.||.|.+|.|..+. ...++|||+|.+.++|+.|+ .|||..|+|+.|.|..+..
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 35899999999999999999999999999999999875 34689999999999999999 5999999999999998754
No 76
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=1.8e-16 Score=118.53 Aligned_cols=77 Identities=18% Similarity=0.315 Sum_probs=67.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~~ 80 (266)
++|||+|||+.+++++|+++|+.||+|.+|.|..+. ..+++|||+|.+++ +..|+ .|||..|+|+.|.|..+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 689999999999999999999999999999999875 34789999999999 99998 49999999999999987553
Q ss_pred CC
Q 024507 81 VP 82 (266)
Q Consensus 81 ~~ 82 (266)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 33
No 77
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=1.5e-15 Score=116.82 Aligned_cols=74 Identities=23% Similarity=0.394 Sum_probs=68.4
Q ss_pred CCCccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 1 MQQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 1 M~~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
|...++|||+|||+.+|+++|+++|+.||+|.+|.|. +++|||+|.++++|+.|+. |||..|.|+.|.|..+..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 4556899999999999999999999999999999997 4599999999999999995 999999999999998754
No 78
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=118.16 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=69.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..+.. .+++|||+|.++++|+.||.+||..|+|+.|.|..+..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 47999999999999999999999999999999998752 46899999999999999998899999999999987643
No 79
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.4e-16 Score=115.94 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=67.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEe
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITP 76 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~ 76 (266)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+. ..+++|||+|.++++|+.|+. |||..|.|+.|+|..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46899999999999999999999999999999999875 246899999999999999995 999999999988754
No 80
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.62 E-value=6.5e-16 Score=127.21 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=69.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCc---eeEEEEEecCC--CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGD---IERIEILREYG--QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~---I~~I~l~~d~~--~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a 77 (266)
.++|||+|||+++|+++|++||+.||. |.+|+|+.+.. ++|+|||+|.++++|+.||.|||..|+||.|.|..+
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKS 122 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEEC
Confidence 579999999999999999999999999 89999998763 468999999999999999999999999999999875
No 81
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=115.50 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=68.7
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+ +++|||+|.++++|+.|+ .|||..|.|+.|.|..+..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 4579999999999999999999999999999999855 679999999999999999 7999999999999998643
No 82
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=113.28 Aligned_cols=72 Identities=19% Similarity=0.365 Sum_probs=66.9
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
..++|||+|||+.+|+++|+++|+.||.|.+|.|.+ ++|||+|.++++|+.|+. |||..|+|+.|.|..+..
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-----DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-----SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 358999999999999999999999999999999983 499999999999999995 999999999999998754
No 83
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=116.34 Aligned_cols=75 Identities=20% Similarity=0.319 Sum_probs=69.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+++++|+++|+.||.|.+|.|..+.. .+++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 47999999999999999999999999999999998853 3689999999999999999 599999999999999864
No 84
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=2.9e-15 Score=123.29 Aligned_cols=80 Identities=26% Similarity=0.332 Sum_probs=72.6
Q ss_pred CCccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeC
Q 024507 2 QQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (266)
Q Consensus 2 ~~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a 77 (266)
...++|||+|||+.+|+++|+++|+.||+|.+|.|+.+.. ..++|||+|.++++|+.||. |||..|+|+.|.|..+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999999998863 45899999999999999996 9999999999999988
Q ss_pred CCCC
Q 024507 78 ENYV 81 (266)
Q Consensus 78 ~~~~ 81 (266)
....
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6533
No 85
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.2e-16 Score=124.10 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=67.1
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+|+++|++||+.||.|.++.++.+. ..+|+|||+|.++++|+.||.|||..|+|+.|.|..+.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 35799999999999999999999999999985554443 24689999999999999999999999999999998763
No 86
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.6e-15 Score=112.35 Aligned_cols=71 Identities=21% Similarity=0.356 Sum_probs=66.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccC----C-------ceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCee
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFS----G-------DIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQI 71 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~c----G-------~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~ 71 (266)
..++|||+|||+.+++++|+++|+.| | +|.++++..+ +++|||+|.++++|+.|+.|||..|.|+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~~l~g~~~~g~~ 81 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAMAFDGIIFQGQS 81 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHHhcCCCEECCeE
Confidence 35899999999999999999999999 8 9999999865 68999999999999999999999999999
Q ss_pred EEEEe
Q 024507 72 VSITP 76 (266)
Q Consensus 72 I~V~~ 76 (266)
|.|.+
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99975
No 87
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=111.27 Aligned_cols=71 Identities=20% Similarity=0.321 Sum_probs=66.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-h-cCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-L-SGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-L-ng~~l~g~~I~V~~a 77 (266)
.++|||+|||+.+++++|+++|+.||+|.+|.+..+ +++|||+|.++++|+.|+. | ||..|+|+.|.|..+
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 579999999999999999999999999999999975 6799999999999999995 7 999999999999864
No 88
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=6.2e-16 Score=118.81 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=68.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC----CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY----GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~----~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+++++|++||+.|| |.+|+|..+. ..+|+|||+|.+.+++..|+.|||..|+|+.|.|..+.
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEecc
Confidence 58999999999999999999999999 9999999875 24689999999999999999999999999999998764
No 89
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3e-15 Score=116.23 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=68.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+ +++|||+|.++++|+.|+ .|||..|.|+.|.|..+..
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 579999999999999999999999999999999976 689999999999999999 7999999999999997644
No 90
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.61 E-value=1.2e-15 Score=117.32 Aligned_cols=76 Identities=16% Similarity=0.307 Sum_probs=69.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCee---cCeeEEEEe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATI---VDQIVSITP 76 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l---~g~~I~V~~ 76 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. .+++|||+|.++++|+.|+ .|||..+ .|+.|.|..
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 92 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 92 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence 57999999999999999999999999999999998753 5789999999999999999 5999998 899999998
Q ss_pred CCC
Q 024507 77 AEN 79 (266)
Q Consensus 77 a~~ 79 (266)
+..
T Consensus 93 a~~ 95 (106)
T 2dgp_A 93 ADS 95 (106)
T ss_dssp CCC
T ss_pred CCc
Confidence 643
No 91
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.61 E-value=1e-15 Score=122.02 Aligned_cols=74 Identities=11% Similarity=0.168 Sum_probs=68.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCC-ceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSG-DIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG-~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+++++|+++|+.|| +|..+.+..+ ..+|+|||+|+++++|+.|+ .|||..|+|+.|.|..+.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 46899999999999999999999999 9999999643 35789999999999999999 599999999999999864
No 92
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=9.7e-16 Score=117.10 Aligned_cols=73 Identities=29% Similarity=0.377 Sum_probs=68.8
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
++|||+|||+.+|+++|+++|+.||+|.+|.|..+ .+++|||+|.++++|+.|+. |||..|+|+.|.|..+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 58999999999999999999999999999999987 67899999999999999995 999999999999998754
No 93
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=8.9e-16 Score=111.22 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=65.9
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a 77 (266)
++|||+|||+.+++++|+++|+.||+|.+|.+..++ .++|+|||+|.++++++.|+. +| ..|+|+.|.|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999875 246899999999999999996 55 9999999999864
No 94
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.6e-15 Score=116.86 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=69.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCcee--------EEEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCe
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIE--------RIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQ 70 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~--------~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~ 70 (266)
..++|||+|||+.+|+++|+++|+.||.|. .|+|..+. ..+++|||+|.++++|+.||. |||..|.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 358999999999999999999999999999 69999874 246899999999999999995 999999999
Q ss_pred eEEEEeCCC
Q 024507 71 IVSITPAEN 79 (266)
Q Consensus 71 ~I~V~~a~~ 79 (266)
.|.|..+..
T Consensus 94 ~l~V~~a~~ 102 (113)
T 2cpe_A 94 KLKVSLARK 102 (113)
T ss_dssp ECEEECSSC
T ss_pred EEEEEECCC
Confidence 999998654
No 95
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=116.00 Aligned_cols=75 Identities=20% Similarity=0.177 Sum_probs=68.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+++++|++||+.||.|.++.++.++. .+++|||+|.++++|+.|+ .|||..|+|+.|+|..+.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 47899999999999999999999999999888887653 3689999999999999999 799999999999999754
No 96
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=125.99 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=68.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCC--ceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSG--DIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG--~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
.++|||+||++.+|+++|+++|+.|| +|.+|.|..+.. .+|||||+|.++++|+.|| .|||..|+|+.|.|..+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 47999999999999999999999999 999999998852 4689999999999999999 58999999999999876
Q ss_pred C
Q 024507 78 E 78 (266)
Q Consensus 78 ~ 78 (266)
.
T Consensus 135 ~ 135 (156)
T 3n9u_C 135 T 135 (156)
T ss_dssp C
T ss_pred C
Confidence 3
No 97
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.3e-15 Score=111.89 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=66.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
..++|||+|||+.+|+++|+++|+.||+|.+|.+. .++|||+|+++++|+.|+ .|||..|.|+.|.|..+..
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 35899999999999999999999999999999997 349999999999999999 6999999999999998753
No 98
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.8e-15 Score=113.60 Aligned_cols=76 Identities=14% Similarity=0.234 Sum_probs=68.9
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+.. .+++|||+|.++++|+.||. ++..|+|+.|.|..+..
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCT
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCC
Confidence 357899999999999999999999999999999998852 36899999999999999998 68899999999998654
No 99
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.60 E-value=2.4e-15 Score=123.36 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=70.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ..+|+|||+|.++++++.|| .|||..|.|++|.|..+..
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 5799999999999999999999999999999999874 35789999999999999999 5999999999999998764
Q ss_pred C
Q 024507 80 Y 80 (266)
Q Consensus 80 ~ 80 (266)
.
T Consensus 150 ~ 150 (158)
T 2kn4_A 150 G 150 (158)
T ss_dssp S
T ss_pred C
Confidence 3
No 100
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.3e-15 Score=115.04 Aligned_cols=71 Identities=13% Similarity=0.206 Sum_probs=66.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
.++|||+|||+.+++++|+++|+.||.|.+|++.. .+++|||+|.+.++|..|+ .|||..|+|+.|+|..+
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP---EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 57999999999999999999999999999999983 4789999999999999999 69999999999999765
No 101
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.60 E-value=3.8e-15 Score=119.93 Aligned_cols=77 Identities=21% Similarity=0.368 Sum_probs=70.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
.++|||+||++.+++++|+++|+.||+|.+|.|..+.. .+++|||+|.++++|+.|+. |||..|.|+.|.|..+..
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 121 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 48999999999999999999999999999999998863 36899999999999999995 999999999999998754
Q ss_pred C
Q 024507 80 Y 80 (266)
Q Consensus 80 ~ 80 (266)
-
T Consensus 122 ~ 122 (139)
T 1u6f_A 122 G 122 (139)
T ss_dssp C
T ss_pred C
Confidence 3
No 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=120.15 Aligned_cols=72 Identities=14% Similarity=0.220 Sum_probs=66.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hc--CCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LS--GATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Ln--g~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+||++|+++|+.||+|.+|.|+++ +|+|||+|+++++|+.|+. |+ |..|.|++|.|..+.
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 579999999999999999999999999999999975 6899999999999999995 65 489999999998764
No 103
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=2.3e-15 Score=119.33 Aligned_cols=77 Identities=22% Similarity=0.269 Sum_probs=70.4
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+|+++|+++|+.||.|.+|.|..+. ...++|||+|.++++|+.|+ .|||..|+|+.|.|..+.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 45799999999999999999999999999999999875 24689999999999999999 599999999999999874
Q ss_pred C
Q 024507 79 N 79 (266)
Q Consensus 79 ~ 79 (266)
.
T Consensus 101 ~ 101 (126)
T 3ex7_B 101 V 101 (126)
T ss_dssp E
T ss_pred C
Confidence 3
No 104
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7e-15 Score=112.10 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=67.1
Q ss_pred CCccEEEEeCCCCcccHHHHHHHcccC--CceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 2 QQTRTVQVKNVSDLAHEREIHEFFSFS--GDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 2 ~~~~TV~V~NLs~~~Te~dL~efFs~c--G~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
...++|||+|||+.+|+++|+++|+.| |.|.+|.+. +++|||+|.++++|..|+. |||..|.|+.|.|..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 456899999999999999999999999 999999885 5699999999999999996 99999999999999764
Q ss_pred C
Q 024507 79 N 79 (266)
Q Consensus 79 ~ 79 (266)
.
T Consensus 88 ~ 88 (99)
T 2cpd_A 88 P 88 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 105
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3e-15 Score=113.75 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=67.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeec--CeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIV--DQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~--g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|.+..+ +++|||+|.++++|+.|+. |||..|. |+.|.|..+.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 479999999999999999999999999999999865 6799999999999999995 9999999 9999999754
No 106
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.59 E-value=7.3e-15 Score=112.72 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=66.4
Q ss_pred CccEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~-~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
+.++|||+|||+ .+++++|+++|+.||.|.+|+|. +++|||+|.+.++|..|+. |||..|+|+.|.|..+.
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 468999999998 99999999999999999999994 7899999999999999995 99999999999998753
No 107
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=1.7e-15 Score=114.44 Aligned_cols=75 Identities=27% Similarity=0.372 Sum_probs=68.6
Q ss_pred ccEEEEeCCCCcccHHHHH----HHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIH----EFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~----efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+++++|+ ++|+.||.|.+|.+...+..+++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 87 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEcc
Confidence 5899999999999999999 99999999999999854445789999999999999999 599999999999998754
No 108
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.59 E-value=2.6e-15 Score=116.52 Aligned_cols=72 Identities=8% Similarity=0.121 Sum_probs=67.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
++..|+|+||++.+||++|+++|+.+|+|.++.+.. ++|||||+|.++++|+.|+ .|||..|.||+|+|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 567899999999999999999999999999999976 4889999999999999999 69999999999999875
No 109
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.4e-15 Score=118.26 Aligned_cols=73 Identities=22% Similarity=0.179 Sum_probs=67.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|+++|+.||.|.+|.|.. .+++|||+|.++++|+.|+ .|||..|+|++|.|..+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 47999999999999999999999999999999975 3679999999999999999 5999999999999988754
No 110
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=119.36 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=68.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~ 76 (266)
.++|||+|||+.+++++|+++|+.||+|.+|+|..+. ..+++|||+|.++++|+.|+ .|||..|+|+.|+|..
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 5899999999999999999999999999999999874 35789999999999999999 6999999999999975
No 111
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=114.32 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=69.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHccc-CCceeEEEEEecC--CCCcEEEEEecChHHHHHHHH-hcCCe-ecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSF-SGDIERIEILREY--GQSKTAFVTFKDAKALEIALL-LSGAT-IVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~-cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALl-Lng~~-l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+. ||.|.+|.|..+. ..+++|||+|.++++|+.|+. |||.. |+|+.|.|..+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 579999999999999999999999 9999999999885 246899999999999999995 99999 999999998764
No 112
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=113.08 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=67.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEE-EEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIE-ILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~-l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|+ |..+.. .+.|||+|.+++++..|+. |||..|+|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~-~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE-TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS-SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 57999999999999999999999999999995 776654 3449999999999999995 999999999999998643
No 113
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4e-15 Score=113.28 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=66.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.||.|. +.+..+ ..+++|||+|.++++|+.|+ .|||..|+|+.|.|..+.
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 58999999999999999999999999997 677665 45789999999999999999 699999999999998764
No 114
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=123.35 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=68.0
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCce----eEEEEEecC--CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEe
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDI----ERIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITP 76 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I----~~I~l~~d~--~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~ 76 (266)
+.++|||+|||+.+|+++|++||+.||+| .+|.|+.+. .++|+|||+|+++++|+.||.+||..|+||.|.|.+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFR 101 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 35799999999999999999999999875 799999875 246899999999999999998899999999999987
Q ss_pred C
Q 024507 77 A 77 (266)
Q Consensus 77 a 77 (266)
+
T Consensus 102 a 102 (123)
T 2dha_A 102 S 102 (123)
T ss_dssp E
T ss_pred C
Confidence 5
No 115
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=6.9e-15 Score=115.27 Aligned_cols=70 Identities=23% Similarity=0.377 Sum_probs=66.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|.|. +++|||+|.+.++|+.|+ .|||..|+|+.|.|..+.
T Consensus 31 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp CSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 5899999999999999999999999999999998 689999999999999999 599999999999998754
No 116
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.58 E-value=6.3e-15 Score=118.78 Aligned_cols=76 Identities=29% Similarity=0.436 Sum_probs=70.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAENY 80 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~--~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~~ 80 (266)
|+|||+|||+.+|+++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999998762 4689999999999999999 79999999999999987543
No 117
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.2e-15 Score=117.69 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=66.7
Q ss_pred ccEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcC--CeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSG--ATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~-~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng--~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+ .+||++|+++|+.||+|.+|.|+++ +++|||+|+++++|..|+ .||| ..|.|++|.|..+..
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 57999999999 9999999999999999999999865 479999999999999999 4775 469999999998764
Q ss_pred C
Q 024507 80 Y 80 (266)
Q Consensus 80 ~ 80 (266)
.
T Consensus 92 ~ 92 (102)
T 1x4d_A 92 Y 92 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 118
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.5e-15 Score=114.15 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=68.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCc-eeEEEEE-ecC---CCCcEEEEEecChHHHHHHHH-hc--CCeecCeeEEE
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGD-IERIEIL-REY---GQSKTAFVTFKDAKALEIALL-LS--GATIVDQIVSI 74 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~-I~~I~l~-~d~---~~~~~AyVtF~~~~aa~tALl-Ln--g~~l~g~~I~V 74 (266)
..++|||+|||+.+|+++|+++|+.||. |.+|.|. .+. ..+++|||+|.++++|+.|+. || +..|+|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3579999999999999999999999998 9999998 454 247899999999999999995 85 58999999999
Q ss_pred EeCCC
Q 024507 75 TPAEN 79 (266)
Q Consensus 75 ~~a~~ 79 (266)
..+..
T Consensus 87 ~~a~~ 91 (109)
T 2dis_A 87 DWAEP 91 (109)
T ss_dssp EESCS
T ss_pred EEcCC
Confidence 98754
No 119
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.58 E-value=3.7e-15 Score=120.60 Aligned_cols=75 Identities=21% Similarity=0.254 Sum_probs=69.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+. ..+++|||+|.++++|+.|+. |||..|+|+.|.|..+.
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 5789999999999999999999999999999999875 347899999999999999995 99999999999998653
No 120
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9.3e-15 Score=114.38 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=66.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-h--cCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-L--SGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-L--ng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|.|.++ +++|||+|+++++|..|+. | ++..|.|++|.|..+.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 479999999999999999999999999999999865 6899999999999999994 4 5788999999998864
No 121
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.57 E-value=6.7e-15 Score=114.44 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=66.1
Q ss_pred ccEEEEeCCCCc-ccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDL-AHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~-~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+. +|+++|+++|+.||+|.+|.| .+++|||+|.++++|+.|+ .|||..|+|+.|.|..+.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 479999999999 999999999999999999999 3789999999999999999 799999999999999864
No 122
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=3.2e-15 Score=114.42 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=68.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+++++|+++|+.||.|.+|.|..+. ..+|+|||+|+++++|+.|+. ||..|+|+.|.|..+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 5799999999999999999999999999999999886 236899999999999999999 9999999999998753
No 123
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.9e-15 Score=112.75 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=66.9
Q ss_pred CccEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~-~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
..++|||+|||+ .+++++|+++|+.||+|.+|.|. +++|||+|.++++|+.|+. |||..|.|+.|.|..+..
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 358999999999 99999999999999999999995 6799999999999999995 999999999999988644
No 124
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.9e-15 Score=118.74 Aligned_cols=73 Identities=14% Similarity=0.222 Sum_probs=66.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hc--CCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LS--GATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Ln--g~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+||++|+++|+.||+|.+|.|+.+ +++|||+|++.++|..|+. || +..|.|++|.|..+..
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 579999999999999999999999999999999976 6899999999999999994 76 5789999999998653
No 125
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.57 E-value=3.1e-15 Score=121.79 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=70.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ..+++|||+|.++++|+.|+ .|||..|.|+.|.|..+..
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4789999999999999999999999999999998875 34689999999999999999 5999999999999998754
Q ss_pred C
Q 024507 80 Y 80 (266)
Q Consensus 80 ~ 80 (266)
-
T Consensus 127 ~ 127 (135)
T 2lea_A 127 G 127 (135)
T ss_dssp C
T ss_pred C
Confidence 3
No 126
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.57 E-value=3.1e-15 Score=121.96 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=66.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCcee--EEEEEecC--CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIE--RIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~--~I~l~~d~--~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a 77 (266)
.++|||+|||+.+||++|++||+.| .|. +|.|+.+. .++|||||+|+++++|+.||.++|..|+||.|.|.++
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 4799999999999999999999999 577 99998775 3579999999999999999998999999999999875
No 127
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.57 E-value=3.9e-15 Score=121.71 Aligned_cols=73 Identities=23% Similarity=0.365 Sum_probs=68.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|+|..+ ++++|||+|.+++++..|+. |||..|.|++|.|..+.
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 479999999999999999999999999999999876 57899999999999999995 99999999999998753
No 128
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=9.9e-15 Score=115.06 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=65.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCe--ecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGAT--IVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~--l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|.|++. +++|||+|++.++|..|+ .|||.. |.|++|.|.-+.
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~---kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK---KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 579999999999999999999999999999999854 679999999999999999 589876 789999998753
No 129
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=1.8e-15 Score=115.60 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=66.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+|+++|+++|+.||.|.+ .++.+. ..+++|||+|.++++|+.||.|||..|.|+.|.|..+.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 3579999999999999999999999999988 444432 35789999999999999999999999999999998764
No 130
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=6.7e-15 Score=119.71 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=68.4
Q ss_pred ccEEEEeCCCCcccHHHHH----HHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIH----EFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~----efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+++++|+ ++|+.||+|.+|.+...+..+|+|||+|.++++|..|+ .|||..|.|++|.|..+.
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~ 108 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSE 108 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEcc
Confidence 4799999999999999876 79999999999999766566899999999999999999 699999999999998764
No 131
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=4.6e-15 Score=112.10 Aligned_cols=73 Identities=27% Similarity=0.277 Sum_probs=65.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.||.|..+ ...+..+|+|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 5899999999999999999999999999888 3333457899999999999999996 99999999999998753
No 132
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=8.9e-15 Score=114.93 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=65.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCC--eecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGA--TIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~--~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.++|++|+++|+.||+|.+|.|.++ +++|||+|++.++|..|+. ||+. .|.|++|.|..+..
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 579999999999999999999999999999999864 6899999999999999994 7654 59999999988653
No 133
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-14 Score=112.59 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=67.0
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHHH-hcCCee--------cCee
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALL-LSGATI--------VDQI 71 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALl-Lng~~l--------~g~~ 71 (266)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ..+++|||+|.++++|+.|+. |||..| .+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~ 103 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 103 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCc
Confidence 35799999999999999999999999999999999886 236899999999999999995 999999 5677
Q ss_pred EEEEeC
Q 024507 72 VSITPA 77 (266)
Q Consensus 72 I~V~~a 77 (266)
|.|..+
T Consensus 104 l~v~~a 109 (114)
T 1x5o_A 104 LLCKFS 109 (114)
T ss_dssp BEEEEC
T ss_pred eeEEcc
Confidence 888754
No 134
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.55 E-value=1.5e-15 Score=125.52 Aligned_cols=74 Identities=19% Similarity=0.162 Sum_probs=68.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+||++|++||+.|| |.+|.|+.+. .++++|||+|+++++|+.||.||+..|+||.|.|..+.
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 57899999999999999999999999 7799999876 35789999999999999999999999999999998754
No 135
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.55 E-value=1.8e-14 Score=116.13 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|+++|+.||+|.+|.+..+.. .+++|||+|.++++|..|+. |||..|.|++|.|..+..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 48999999999999999999999999999999998762 35899999999999999995 999999999999988653
No 136
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.55 E-value=5e-15 Score=116.97 Aligned_cols=71 Identities=14% Similarity=0.253 Sum_probs=64.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCee-----EEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQI-----VSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~-----I~V~~a 77 (266)
.++|||+|||+.+++++|++||+.||+|.+|.|..+ ++|||+|+++++|+.||. |||..|+|+. |.|...
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 478999999999999999999999999999999865 899999999999999995 9999999998 777664
Q ss_pred C
Q 024507 78 E 78 (266)
Q Consensus 78 ~ 78 (266)
.
T Consensus 92 ~ 92 (115)
T 3beg_B 92 G 92 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 137
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=1.5e-14 Score=124.49 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=71.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAENYV 81 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~--~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~~~ 81 (266)
.++|||+|||+.+|+++|++||+.||+|.+|+|+++.. .+|+|||+|+++++|+.|+.+.|..|+|+.|.|....+|.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYF 188 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC-
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHHH
Confidence 47999999999999999999999999999999998752 4689999999999999999877789999999999877764
Q ss_pred C
Q 024507 82 P 82 (266)
Q Consensus 82 ~ 82 (266)
.
T Consensus 189 ~ 189 (193)
T 2voo_A 189 A 189 (193)
T ss_dssp -
T ss_pred H
Confidence 3
No 138
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=110.87 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=65.0
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
..++|||+|||+.+|+++|+++|+.||.| +++.+. ..+++|||+|.++++|+.|+. |||..|.|+.|.|..+..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 35899999999999999999999999988 444442 357899999999999999996 999999999999998643
No 139
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.55 E-value=1.7e-14 Score=120.21 Aligned_cols=75 Identities=25% Similarity=0.286 Sum_probs=69.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|..|| .|||..|.|+.|.|..+.
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 46899999999999999999999999999999998752 3689999999999999999 599999999999998763
No 140
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.54 E-value=2.6e-14 Score=115.85 Aligned_cols=77 Identities=23% Similarity=0.382 Sum_probs=70.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+++++|+++|+.||+|.+|.+..+.. .+|+|||+|.++++|+.|+ .|||..|.|++|.|..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 468999999999999999999999999999999998753 4689999999999999999 599999999999999865
Q ss_pred C
Q 024507 79 N 79 (266)
Q Consensus 79 ~ 79 (266)
.
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 3
No 141
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.54 E-value=1.5e-14 Score=108.46 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=66.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
..++|||+|||+.+++++|+++|+.| +|.++++. ..+++|||+|.++++|+.|+. |||..|+|+.|+|..+..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 35799999999999999999999999 99999995 457899999999999999995 999999999999998643
No 142
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=108.61 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=65.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCc-eeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcC-CeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGD-IERIEILREYGQSKTAFVTFKDAKALEIAL-LLSG-ATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~-I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng-~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|+++|+.||. |..+.+. ..++|||+|.++++|+.|+ .||| ..|+|+.|.|..+..
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 579999999999999999999999999 7777774 3679999999999999999 5999 999999999998653
No 143
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.54 E-value=2.3e-14 Score=119.21 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=70.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|++||+.||+|.+|.|..+.. .+|+|||+|.++++|..||.++|..|.|+.|.|..+..
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccC
Confidence 58999999999999999999999999999999998853 46899999999999999999999999999999998754
No 144
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=111.87 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=66.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCce----eEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDI----ERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I----~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.||.| ..+++. .+..+++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 4799999999999999999999999999 455555 3345789999999999999999 599999999999999865
Q ss_pred C
Q 024507 79 N 79 (266)
Q Consensus 79 ~ 79 (266)
.
T Consensus 104 ~ 104 (115)
T 2cpx_A 104 N 104 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 145
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.53 E-value=1.4e-14 Score=127.96 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=69.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCC--ceeEEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSG--DIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG--~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a 77 (266)
.++|||+||++.+|+++|++||+.|| +|.+|+|+.+.. .++||||+|++.++|+.||. |||..|.|+.|.|..+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 47899999999999999999999999 999999999862 46899999999999999995 9999999999999976
Q ss_pred C
Q 024507 78 E 78 (266)
Q Consensus 78 ~ 78 (266)
.
T Consensus 148 ~ 148 (229)
T 3q2s_C 148 N 148 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 146
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.53 E-value=2.8e-14 Score=108.15 Aligned_cols=70 Identities=29% Similarity=0.377 Sum_probs=61.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCee--cCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATI--VDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l--~g~~I~V~~a~ 78 (266)
.++|||+|||+++||++|+++|+.||+|.+|+|+.+ ++|||||+|+++++|+. |+|..+ .|+.|.|..+.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEcC
Confidence 579999999999999999999999999999999875 57899999999999883 566665 59999998753
No 147
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.53 E-value=2.8e-14 Score=122.72 Aligned_cols=75 Identities=24% Similarity=0.224 Sum_probs=69.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.+||||+|||+.+||++|++||+.||+|.+|+|+++.. .+++|||+|.+++++..|| .|||..+.|+.|+|....
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 47999999999999999999999999999999998863 4689999999999999999 699999999999998754
No 148
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.53 E-value=3.7e-15 Score=119.84 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=68.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE--EEEEecC---CCCcEEEEEecChHHHHHHH-HhcCC----eecCeeEE
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER--IEILREY---GQSKTAFVTFKDAKALEIAL-LLSGA----TIVDQIVS 73 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~--I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~----~l~g~~I~ 73 (266)
.++|||+|||+.+||++|+++|+.||.|.. |+|+.+. ..+|||||+|.++ ++..|+ .|||. .|+|+.|.
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~ 101 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTIN 101 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEE
Confidence 579999999999999999999999999977 9999886 2478999999999 999998 69999 99999999
Q ss_pred EEeCCC
Q 024507 74 ITPAEN 79 (266)
Q Consensus 74 V~~a~~ 79 (266)
|..+..
T Consensus 102 V~~a~~ 107 (131)
T 2m2b_A 102 VEFAKG 107 (131)
T ss_dssp CEECCC
T ss_pred EEECCC
Confidence 998754
No 149
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=116.57 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=67.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE--------EEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEE
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER--------IEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSI 74 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~--------I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V 74 (266)
.++|||+|||+.+|+++|+++|+.||.|.+ |.+...+...|+|||+|.++++|..|+. |||..|.|+.|.|
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V 124 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 124 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 479999999999999999999999999886 5555555567999999999999999995 9999999999999
Q ss_pred EeCCC
Q 024507 75 TPAEN 79 (266)
Q Consensus 75 ~~a~~ 79 (266)
..+..
T Consensus 125 ~~a~~ 129 (143)
T 3egn_A 125 QFARS 129 (143)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 98754
No 150
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.52 E-value=3.7e-14 Score=121.94 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~-~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++|||+||++.+|+++|+++|+.||.|.+|+|+.+.+ .+++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 46899999999999999999999999999999998864 4689999999999999999 599999999999998864
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=6.5e-14 Score=112.80 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=68.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a 77 (266)
.++|+|+|||+.+|+++|+++|+.||.|.++.+..+. ...|+|||+|.++++|..|+. |||..|+|++|.|..+
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 5789999999999999999999999999999999885 246799999999999999995 9999999999999875
No 152
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.8e-14 Score=115.53 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=65.7
Q ss_pred ccEEEEeCCCCc-ccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hc--CCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDL-AHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LS--GATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~-~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Ln--g~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+. +|+++|+++|+.||+|.+|.|.+. +++|||+|+++++|+.|+. || +..|.|++|.|..+..
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 579999999998 999999999999999999999853 6899999999999999994 65 5679999999998754
No 153
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.51 E-value=4.1e-14 Score=115.20 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=68.6
Q ss_pred CCccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-----CCcEEEEEecChHHHHHHH-HhcCCeec---CeeE
Q 024507 2 QQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-----QSKTAFVTFKDAKALEIAL-LLSGATIV---DQIV 72 (266)
Q Consensus 2 ~~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~-----~~~~AyVtF~~~~aa~tAL-lLng~~l~---g~~I 72 (266)
++.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. .+++|||+|.++++|+.|+ .|||..+. ++++
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 4679999999999999999999999999999999998862 3589999999999999999 59998886 6778
Q ss_pred EEEeCC
Q 024507 73 SITPAE 78 (266)
Q Consensus 73 ~V~~a~ 78 (266)
.+.+..
T Consensus 81 ~~~~~~ 86 (175)
T 3nmr_A 81 QMKPAD 86 (175)
T ss_dssp EEEECG
T ss_pred EEcccc
Confidence 887654
No 154
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-14 Score=112.55 Aligned_cols=74 Identities=24% Similarity=0.309 Sum_probs=60.4
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC------CCCcEEEEEecChHHHHHHH-Hh---cCC-------
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY------GQSKTAFVTFKDAKALEIAL-LL---SGA------- 65 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~------~~~~~AyVtF~~~~aa~tAL-lL---ng~------- 65 (266)
+.++|||+|||+.+|+++|+++|+.||+|. +.++.+. ..+++|||+|+++++|+.|| .| ||.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~ 85 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSS 85 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccC
Confidence 468999999999999999999999999999 8877664 24789999999999999999 46 554
Q ss_pred -eecCeeEEEEeC
Q 024507 66 -TIVDQIVSITPA 77 (266)
Q Consensus 66 -~l~g~~I~V~~a 77 (266)
.+.++.|.|.|+
T Consensus 86 ~~~~~~~~~v~p~ 98 (114)
T 2dnl_A 86 PTIKDKPVQIRPW 98 (114)
T ss_dssp SSSCSEEEEEECC
T ss_pred CCcCCCeeeccCC
Confidence 344555555554
No 155
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.4e-14 Score=106.87 Aligned_cols=74 Identities=30% Similarity=0.278 Sum_probs=62.5
Q ss_pred CCccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 2 QQTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 2 ~~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
...++|||+|||+.+|+++|+++|+.||+|.+|+|..+ .+++|||+|+++++|+.++.. +..+.|+.|.|..+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 34689999999999999999999999999999999865 578999999999999754222 344589999998753
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.50 E-value=6.9e-14 Score=116.33 Aligned_cols=75 Identities=24% Similarity=0.410 Sum_probs=69.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. .+|+|||+|.++++|..||.++|..|+|+.|.|..+.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 47999999999999999999999999999999998852 4689999999999999999889999999999999864
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=6.4e-14 Score=116.71 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=68.5
Q ss_pred CCCccEEEEeCCCCcccHHHHHHHcccC----C-------ceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecC
Q 024507 1 MQQTRTVQVKNVSDLAHEREIHEFFSFS----G-------DIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVD 69 (266)
Q Consensus 1 M~~~~TV~V~NLs~~~Te~dL~efFs~c----G-------~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g 69 (266)
|.+.++|||+|||+.+|+++|++||+.| | .|.++.+.. .+++|||+|.++++|+.||.|||..|.|
T Consensus 1 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~---~~g~afV~F~~~~~A~~Al~l~g~~~~g 77 (198)
T 2yh0_A 1 GAMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAMAFDGIIFQG 77 (198)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET---TTTEEEEEESCSHHHHHHGGGTTEEETT
T ss_pred CCceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC---CCCEEEEEeCCHHHHHHHHHhcCCEEcC
Confidence 5578999999999999999999999999 5 666776653 3789999999999999999999999999
Q ss_pred eeEEEEeCCCCCCC
Q 024507 70 QIVSITPAENYVPK 83 (266)
Q Consensus 70 ~~I~V~~a~~~~~~ 83 (266)
+.|.|..+.....+
T Consensus 78 ~~i~v~~~~~~~~~ 91 (198)
T 2yh0_A 78 QSLKIRRPHDYQPL 91 (198)
T ss_dssp EEEEEECCCCCCCC
T ss_pred ceEEEeCCCCCCCC
Confidence 99999988766544
No 158
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.50 E-value=3.7e-14 Score=120.73 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=70.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY--GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+++++|++||+.||+|.+|.|..+. ...++|||+|.++++|+.|+. |||..|+|+.|.|..+..
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 4799999999999999999999999999999999875 346899999999999999995 999999999999988654
No 159
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.4e-14 Score=107.28 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=63.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.|+ .|.++.+. ..+++|||+|.++++|+.||. |||..|.|+.|.|..+.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp CSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 57999999999999999999999774 56666664 246899999999999999995 99999999999999864
No 160
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.50 E-value=9.2e-14 Score=117.24 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=70.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
.++|||+||++.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.+.++|..|+. |||..|+|+.|.|..+..
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 47999999999999999999999999999999998852 36899999999999999995 999999999999998654
No 161
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.50 E-value=2.7e-14 Score=115.92 Aligned_cols=75 Identities=24% Similarity=0.288 Sum_probs=69.5
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.||.|.++.+..+. .++|+|||+|.++++|..|+.+||..|+|+.|.|..+.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence 4689999999999999999999999999999999875 35689999999999999999999999999999998753
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=6e-14 Score=114.39 Aligned_cols=74 Identities=14% Similarity=0.341 Sum_probs=68.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a 77 (266)
.++|+|+|||+.+|+++|+++|+.||+|.+|.+..+.. ++++|||+|.++++|..|+. |||..|+|+.|.|..+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 47899999999999999999999999999999998852 36899999999999999995 9999999999999875
No 163
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-13 Score=104.90 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=64.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..++|||+|+ .+|+++|+++|+.||+|.+|.|. ..+++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 3579999995 89999999999999999999995 34789999999999999999 799999999999998764
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.49 E-value=7e-14 Score=117.97 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=68.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|++||+.||+|.+|.|..+. ..+++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 4799999999999999999999999999999998875 257899999999999999996 999999999999976543
No 165
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.49 E-value=1e-13 Score=120.16 Aligned_cols=75 Identities=15% Similarity=0.339 Sum_probs=69.3
Q ss_pred CccEEEEeCCC-CcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVS-DLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs-~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
+.++|||+||+ +.+|+++|+++|+.||.|.+|+|+.+ .+|+|||+|.++++|+.|+ .|||..|.|++|.|..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 56899999999 79999999999999999999999865 3789999999999999999 5999999999999998753
No 166
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.49 E-value=1e-13 Score=113.01 Aligned_cols=78 Identities=22% Similarity=0.387 Sum_probs=69.4
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccC----C-------ceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCee
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFS----G-------DIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQI 71 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~c----G-------~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~ 71 (266)
+.++|||+|||+.+|+++|+++|+.| | .|.++.+..+ +++|||+|.++++|..|+.|||..|.|++
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~---~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 79 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT---TTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC---CCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence 56899999999999999999999999 6 7888887644 78999999999999999999999999999
Q ss_pred EEEEeCCCCCCC
Q 024507 72 VSITPAENYVPK 83 (266)
Q Consensus 72 I~V~~a~~~~~~ 83 (266)
|.|........+
T Consensus 80 i~v~~~~~~~~~ 91 (172)
T 2g4b_A 80 LKIRRPHDYQPL 91 (172)
T ss_dssp CEEECCSSCCCC
T ss_pred eeecCCcccCCC
Confidence 999987655443
No 167
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=2.4e-15 Score=117.97 Aligned_cols=76 Identities=17% Similarity=0.293 Sum_probs=69.4
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeE--------EEEEecC---CCCcEEEEEecChHHHHHHHH-hcCCeecCe
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIER--------IEILREY---GQSKTAFVTFKDAKALEIALL-LSGATIVDQ 70 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~--------I~l~~d~---~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~ 70 (266)
..++|||+|||+.+++++|+++|+.||.|.+ |.|..+. ..+++|||+|.++++|+.|+. |||..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4589999999999999999999999999999 8898774 246899999999999999995 999999999
Q ss_pred eEEEEeCC
Q 024507 71 IVSITPAE 78 (266)
Q Consensus 71 ~I~V~~a~ 78 (266)
.|.|..+.
T Consensus 86 ~l~V~~a~ 93 (116)
T 2lcw_A 86 PIKVSFAT 93 (116)
Confidence 99998764
No 168
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.47 E-value=1.2e-13 Score=122.80 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=70.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~-~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|++||+.||+|.+|.|..+. +.+++|||+|.++++|..|+.|||..|.|+.|.|.+...
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~ 117 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTE 117 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECCC
Confidence 5899999999999999999999999999999999876 347999999999999999999999999999999988654
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.47 E-value=9.5e-14 Score=112.70 Aligned_cols=75 Identities=11% Similarity=0.264 Sum_probs=67.6
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
+.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. .++|+|||+|.++++|+.|+. ++..|+|+.|.|..+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEccccccc
Confidence 46899999999999999999999999999999999875 356899999999999999998 4789999999987653
No 170
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.46 E-value=7.3e-14 Score=117.32 Aligned_cols=74 Identities=22% Similarity=0.403 Sum_probs=69.2
Q ss_pred ccEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~-~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+ .+++++|+++|+.||.|.+|.|..+. .++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 48999999999 99999999999999999999998875 7899999999999999995 999999999999988754
No 171
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.46 E-value=1.9e-13 Score=111.22 Aligned_cols=74 Identities=27% Similarity=0.346 Sum_probs=67.3
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEecChHHHHHHH-HhcCCeecC---eeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLSGATIVD---QIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~--~~~~AyVtF~~~~aa~tAL-lLng~~l~g---~~I~V~~a 77 (266)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ++++|||+|.++++|..|+ .|||..+.+ ++|.|..+
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 57999999999999999999999999999999998863 3689999999999999999 699998874 99999865
No 172
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.45 E-value=2.3e-13 Score=113.30 Aligned_cols=75 Identities=13% Similarity=0.337 Sum_probs=69.4
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 58999999999999999999999999999999998852 36899999999999999995 99999999999999764
No 173
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.44 E-value=2e-13 Score=113.11 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=64.3
Q ss_pred CccEEEEeCC----CCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecC----h-HH---HHHHHH---hcC
Q 024507 3 QTRTVQVKNV----SDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKD----A-KA---LEIALL---LSG 64 (266)
Q Consensus 3 ~~~TV~V~NL----s~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~----~-~a---a~tALl---Lng 64 (266)
|...|+|+|| |+.++|.+|++||+.+|+|.+++++.|+. +.|||||+|.| + ++ |..|+. |||
T Consensus 1 mp~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 1 MSCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp -CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 3469999999 99999999999999999999999999985 37999999996 3 32 777865 899
Q ss_pred CeecCeeEEEEe
Q 024507 65 ATIVDQIVSITP 76 (266)
Q Consensus 65 ~~l~g~~I~V~~ 76 (266)
..|+|+.|+|..
T Consensus 81 ~~I~Gr~irV~l 92 (136)
T 2j8a_A 81 CFIMGFKFEVIL 92 (136)
T ss_dssp EEETTEEEEEEE
T ss_pred CeecCcEEEEEE
Confidence 999999999985
No 174
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.44 E-value=3.2e-13 Score=109.38 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=67.1
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecC--eeEEEEe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVD--QIVSITP 76 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g--~~I~V~~ 76 (266)
.++|+|+|||+.+++++|+++|+.||.|.++.+..+.. .+++|||+|.++++|..|+. |||..|.| ++|+|..
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 47999999999999999999999999999999998762 35899999999999999995 99999988 9999875
No 175
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.43 E-value=2.1e-13 Score=118.46 Aligned_cols=75 Identities=21% Similarity=0.394 Sum_probs=69.7
Q ss_pred CccEEEEeCCCC-cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSD-LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~-~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
..++|||+|||+ .+++++|++||+.||+|.+|.|..+. .++|||+|.++++|+.|+ .|||..|.|+.|.|..+..
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 358999999999 99999999999999999999999875 789999999999999999 5999999999999987754
No 176
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.4e-13 Score=110.76 Aligned_cols=72 Identities=11% Similarity=0.210 Sum_probs=65.2
Q ss_pred ccEEEE--eCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCee-----cCeeEEEE
Q 024507 4 TRTVQV--KNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATI-----VDQIVSIT 75 (266)
Q Consensus 4 ~~TV~V--~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l-----~g~~I~V~ 75 (266)
.++||| +||++.+|+++|+++|+.||+|.+|.|..+ ++||||+|+++++|+.|+ .|||..| .|++|.|.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 478999 669999999999999999999999998753 679999999999999999 5999998 78899998
Q ss_pred eCC
Q 024507 76 PAE 78 (266)
Q Consensus 76 ~a~ 78 (266)
.+.
T Consensus 102 ~a~ 104 (114)
T 2cq2_A 102 FVE 104 (114)
T ss_dssp EES
T ss_pred ecc
Confidence 764
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.43 E-value=3.6e-13 Score=119.22 Aligned_cols=76 Identities=26% Similarity=0.372 Sum_probs=70.5
Q ss_pred ccEEEEeCCCCcccHHHHH----HHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIH----EFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~----efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
.++|||+||++.+|+++|+ ++|+.||.|.+|.+...+..+++|||+|.+.++|..|+ .|||..|.|+.|.|..+.
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 88 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 88 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence 5899999999999999977 99999999999999886666899999999999999999 799999999999998775
Q ss_pred C
Q 024507 79 N 79 (266)
Q Consensus 79 ~ 79 (266)
.
T Consensus 89 ~ 89 (282)
T 3pgw_A 89 T 89 (282)
T ss_pred c
Confidence 4
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.43 E-value=3.3e-13 Score=110.78 Aligned_cols=73 Identities=27% Similarity=0.277 Sum_probs=65.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
.++|||+|||+.+|+++|+++|+.||.|..+ ...+..+++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 4799999999999999999999999999887 2223467899999999999999995 99999999999998753
No 179
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.43 E-value=2.9e-13 Score=130.29 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=70.2
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC---CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY---GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~---~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|++||+.||.|..|.|+.+. ...+||||+|.++++|..|| .|||..|.|+.|.|..+..
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 3699999999999999999999999999999999874 24789999999999999999 7999999999999998754
No 180
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.42 E-value=3.8e-13 Score=114.72 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=66.5
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecC--eeEEEEeCCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVD--QIVSITPAEN 79 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g--~~I~V~~a~~ 79 (266)
.+|||+||++.+|+++|+++|+.||+|++|.|..+. .+++|||+|++.++|+.|+ .|||..|.| +.|+|..+..
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS-SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 468999999999999999999999999999997543 4679999999999999999 599999965 9999987754
No 181
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.42 E-value=8.6e-13 Score=108.49 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=65.5
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcE-EEEEecChHHHHHHH-HhcCCeecC--eeEEEEeCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKT-AFVTFKDAKALEIAL-LLSGATIVD--QIVSITPAE 78 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~-AyVtF~~~~aa~tAL-lLng~~l~g--~~I~V~~a~ 78 (266)
..|||+||++.+|+++|+++|+.||+|.+|.|..+. +++ |||+|.++++|+.|+ .|||..|.| +.|+|..+.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 468999999999999999999999999999998753 577 999999999999999 699999998 889998764
No 182
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=9.7e-13 Score=107.06 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=63.7
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcE-EEEEecChHHHHHHH-HhcCCeecC--eeEEEEeCC
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKT-AFVTFKDAKALEIAL-LLSGATIVD--QIVSITPAE 78 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~-AyVtF~~~~aa~tAL-lLng~~l~g--~~I~V~~a~ 78 (266)
..|||+||++.+|+++|+++|+.||+|.+|.|... .|| |||+|.++++|..|+ .|||..|.| +.|+|..+.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 35789999999999999999999999999999753 486 999999999999999 599999988 689998654
No 183
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.40 E-value=7.4e-13 Score=106.67 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=65.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHHH-hcCCeecCee--EEEEe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIALL-LSGATIVDQI--VSITP 76 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~--I~V~~ 76 (266)
.++|+|+|||+.+++++|+++|+.||.|.++++..+.. ..++|||+|.++++|..|+. |||..|.|+. |.|..
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 47899999999999999999999999999999998752 36899999999999999995 9999999975 77754
No 184
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.40 E-value=6.9e-13 Score=117.50 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=67.8
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a~ 78 (266)
..++|||+|||+.+|+++|+++|+.||.|.+|.|.++ +|+|||+|.++++|..|+. |||..|.|+.|.|..+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 3579999999999999999999999999999999754 6899999999999999995 99999999999998864
No 185
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.39 E-value=8.4e-13 Score=105.69 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=64.9
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
..++|||+|+ .+|+++|+++|+.||+|.+|.|. ..+++|||+|.+.++|+.|+ .|||..|.|+.|.|..+.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 3579999995 69999999999999999999996 34789999999999999999 699999999999999864
No 186
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=9.2e-13 Score=103.46 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=61.0
Q ss_pred cE-EEEeCCCCcccHHH----HHHHcccC-CceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 5 RT-VQVKNVSDLAHERE----IHEFFSFS-GDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 5 ~T-V~V~NLs~~~Te~d----L~efFs~c-G~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
.| |||+|||.++++++ |+++|+.| |+|.+|. .|+|||+|.+.++|..|+ .|||..|.||+|+|..+
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 45 99999999999998 55899999 5999992 389999999999999999 59999999999999876
Q ss_pred CC
Q 024507 78 EN 79 (266)
Q Consensus 78 ~~ 79 (266)
..
T Consensus 82 ~~ 83 (96)
T 2diu_A 82 PK 83 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 187
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.39 E-value=2.2e-13 Score=111.78 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=66.5
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEec--CCCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCCC
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILRE--YGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d--~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~~ 79 (266)
+.++|||+|||+.+|+++|+++|+.||.|..+.+... +..+|+|||+|.++++|..|+.|||..|.|+.|.|..+..
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCC
Confidence 3689999999999999999999999998776333222 2457899999999999999999999999999999998754
No 188
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.39 E-value=7.3e-13 Score=117.74 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=70.1
Q ss_pred CccEEEEeCCCCc-ccHHHHHHHcccCCceeEEEEEecC----CCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeC
Q 024507 3 QTRTVQVKNVSDL-AHEREIHEFFSFSGDIERIEILREY----GQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (266)
Q Consensus 3 ~~~TV~V~NLs~~-~Te~dL~efFs~cG~I~~I~l~~d~----~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a 77 (266)
..++|||+|||+. +|+++|+++|+.||.|.+|+|..+. ..+++|||+|.++++|..|+.|||..|+|+.|.|..+
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLA 288 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEEC
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEe
Confidence 3579999999999 9999999999999999999998874 3478999999999999999999999999999999876
Q ss_pred C
Q 024507 78 E 78 (266)
Q Consensus 78 ~ 78 (266)
.
T Consensus 289 ~ 289 (292)
T 2ghp_A 289 D 289 (292)
T ss_dssp C
T ss_pred c
Confidence 4
No 189
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.38 E-value=9e-13 Score=118.42 Aligned_cols=75 Identities=27% Similarity=0.333 Sum_probs=68.4
Q ss_pred CCccEEEEeCCCCcc---------cHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCee----
Q 024507 2 QQTRTVQVKNVSDLA---------HEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATI---- 67 (266)
Q Consensus 2 ~~~~TV~V~NLs~~~---------Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l---- 67 (266)
...+||||+||++.+ +|++|+++|+.+|+|++|+|+.+ +++|||+|.+.++|+.|+ .|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 346899999999998 89999999999999999999864 689999999999999999 6999999
Q ss_pred --------cCeeEEEEeCCC
Q 024507 68 --------VDQIVSITPAEN 79 (266)
Q Consensus 68 --------~g~~I~V~~a~~ 79 (266)
.|+.|.|..+.+
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp STTGGGGGGSCCCEEEECC-
T ss_pred cccccccCCCCEEEEEEccC
Confidence 899999998754
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.9e-12 Score=100.35 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=65.5
Q ss_pred CccEEEEeCCCCcc-----------cHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCe
Q 024507 3 QTRTVQVKNVSDLA-----------HEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQ 70 (266)
Q Consensus 3 ~~~TV~V~NLs~~~-----------Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~ 70 (266)
..++|+|.||.... ++++|+++|+.||+|.+|.| .+....|+|||+|.++++|+.|+ .|||..|+|+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 35899999995443 37899999999999999966 55567899999999999999999 6999999999
Q ss_pred eEEEEeCC
Q 024507 71 IVSITPAE 78 (266)
Q Consensus 71 ~I~V~~a~ 78 (266)
+|.|..+.
T Consensus 93 ~l~v~~a~ 100 (112)
T 2dit_A 93 QITAQAWD 100 (112)
T ss_dssp ECEEEECC
T ss_pred EEEEEEeC
Confidence 99999864
No 191
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.38 E-value=2.9e-12 Score=100.65 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=66.6
Q ss_pred CccEEEEeCCCC-----cccHHHHHHHcccCCceeEEEEEecC----CCCcEEEEEecChHHHHHHH-HhcCCeecCeeE
Q 024507 3 QTRTVQVKNVSD-----LAHEREIHEFFSFSGDIERIEILREY----GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIV 72 (266)
Q Consensus 3 ~~~TV~V~NLs~-----~~Te~dL~efFs~cG~I~~I~l~~d~----~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I 72 (266)
.+++|++.|+.. .-++++|++.|+.||+|.+|.|..++ ..+|++||+|.++++|..|+ .|||..++||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 358999999973 34799999999999999999999874 34799999999999999999 599999999999
Q ss_pred EEEeCC
Q 024507 73 SITPAE 78 (266)
Q Consensus 73 ~V~~a~ 78 (266)
.|..+.
T Consensus 87 ~v~~a~ 92 (105)
T 2pe8_A 87 KACFYN 92 (105)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 998763
No 192
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.37 E-value=1.4e-12 Score=115.38 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=66.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeec-CeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIV-DQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~-g~~I~V~~a 77 (266)
.++|||+||++.+|+++|+++|+.||.|.+|+|..+. .++|||+|.+.++|..|+. |||..|+ |+.|+|..+
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 4789999999999999999999999999999999654 5799999999999999995 9999999 999999864
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.34 E-value=3.1e-12 Score=113.21 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=68.3
Q ss_pred ccEEEEeCCCCc-ccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEecChHHHHHHHH-hcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDL-AHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIALL-LSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~-~Te~dL~efFs~cG~I~~I~l~~d~~--~~~~AyVtF~~~~aa~tALl-Lng~~l~g~~I~V~~a 77 (266)
.++|||+|||+. +|+++|+++|+.||.|.+|.|..+.. .+++|||+|.++++|..|+. |||..|+|++|.|..+
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 579999999999 59999999999999999999998752 46899999999999999995 9999999999999875
No 194
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.33 E-value=4.3e-12 Score=112.34 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=70.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC---CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG---QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~---~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~~ 79 (266)
.++|||+|||+.+|+++|+++|+.||.|.++.+..+.. ..|+|||+|.+++++..|+ .|||..|+|+.|.|..+..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 47899999999999999999999999999999998752 4689999999999999999 7999999999999988754
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.32 E-value=2.1e-12 Score=108.35 Aligned_cols=72 Identities=15% Similarity=0.308 Sum_probs=66.8
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCC-ceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeec-CeeEEEEeC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSG-DIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIV-DQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG-~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~-g~~I~V~~a 77 (266)
.++|+|+|||+.+++++|+++|+.|| +|.+|++.++. .++|||+|.++++|..|+. |||..|+ |+.|+|..+
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 57899999999999999999999999 99999997643 6899999999999999995 9999999 999999865
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.30 E-value=2.4e-12 Score=111.47 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=61.7
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCce--eEEEEEecC-CCCcEEEEEecChHHHHHHH-HhcCCeecCe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDI--ERIEILREY-GQSKTAFVTFKDAKALEIAL-LLSGATIVDQ 70 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I--~~I~l~~d~-~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~ 70 (266)
.++|||+|||+.+|+++|+++|+.||.| .+|++..+. +++++|||+|.+.++|..|| .|||..|.|+
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 3689999999999999999999999999 999998876 34699999999999999999 5999999988
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.30 E-value=6.7e-12 Score=108.94 Aligned_cols=73 Identities=15% Similarity=0.327 Sum_probs=67.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCC-ceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hcCCeec-CeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSG-DIERIEILREYGQSKTAFVTFKDAKALEIALL-LSGATIV-DQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG-~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Lng~~l~-g~~I~V~~a~ 78 (266)
.++|||+|||+.+++++|+++|+.|| +|.+|++..+ .+++|||+|.+.++|..|+. |||..|+ |+.|.|..+.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 47899999999999999999999999 9999999754 26799999999999999995 9999999 9999998753
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.28 E-value=7.6e-12 Score=110.77 Aligned_cols=77 Identities=23% Similarity=0.360 Sum_probs=67.6
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC--CCcEEEEEecChHHHHHHH-Hhc-CCeec---CeeEEEEe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG--QSKTAFVTFKDAKALEIAL-LLS-GATIV---DQIVSITP 76 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~--~~~~AyVtF~~~~aa~tAL-lLn-g~~l~---g~~I~V~~ 76 (266)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..+.. +.|+|||+|.++++|..|+ .|| |..+. +++|.|.+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 57999999999999999999999999999999998852 4689999999999999999 574 55554 99999998
Q ss_pred CCCC
Q 024507 77 AENY 80 (266)
Q Consensus 77 a~~~ 80 (266)
+...
T Consensus 176 ~~~~ 179 (261)
T 3sde_A 176 MEQF 179 (261)
T ss_dssp CCCE
T ss_pred cccc
Confidence 8654
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.21 E-value=8.6e-12 Score=97.57 Aligned_cols=69 Identities=14% Similarity=0.250 Sum_probs=58.6
Q ss_pred EeCCCCcccHHHHHHHc------------ccCCceeEEEEEecC--CCCcEEEEEecChHHHHHHH-HhcCCeecCeeEE
Q 024507 9 VKNVSDLAHEREIHEFF------------SFSGDIERIEILREY--GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVS 73 (266)
Q Consensus 9 V~NLs~~~Te~dL~efF------------s~cG~I~~I~l~~d~--~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~ 73 (266)
+.||++.+++++|+++| +.||+|.+|.|.++. .++|+|||+|+++++|..|+ .|||..++||.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45566677888777766 999999999999875 24789999999999999999 5999999999999
Q ss_pred EEeC
Q 024507 74 ITPA 77 (266)
Q Consensus 74 V~~a 77 (266)
|..+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9754
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.17 E-value=5.8e-11 Score=93.08 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=64.0
Q ss_pred ccEEEEeCCCC--c--------ccHHHHHHHcccCCceeEEEEEecCC-----CCcEEEEEecChHHHHHHH-HhcCCee
Q 024507 4 TRTVQVKNVSD--L--------AHEREIHEFFSFSGDIERIEILREYG-----QSKTAFVTFKDAKALEIAL-LLSGATI 67 (266)
Q Consensus 4 ~~TV~V~NLs~--~--------~Te~dL~efFs~cG~I~~I~l~~d~~-----~~~~AyVtF~~~~aa~tAL-lLng~~l 67 (266)
++.|.+.|+-. . ..+++|++.|+.||+|.+|.|+++.. ..|++||+|+++++|..|+ .|||..+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 57899999833 2 24589999999999999999987752 4689999999999999999 6999999
Q ss_pred cCeeEEEEeC
Q 024507 68 VDQIVSITPA 77 (266)
Q Consensus 68 ~g~~I~V~~a 77 (266)
+||.|+|..+
T Consensus 85 ~GR~i~v~~~ 94 (105)
T 3v4m_A 85 ANRVVVTKYC 94 (105)
T ss_dssp TTEECEEEEE
T ss_pred CCCEEEEEEe
Confidence 9999999865
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.14 E-value=1.8e-10 Score=92.50 Aligned_cols=74 Identities=23% Similarity=0.230 Sum_probs=64.7
Q ss_pred ccEEEEeCCCCc-----ccHHHHHHHcccCCceeEEEEEecCC-------CCcEEEEEecChHHHHHHH-HhcCCeecCe
Q 024507 4 TRTVQVKNVSDL-----AHEREIHEFFSFSGDIERIEILREYG-------QSKTAFVTFKDAKALEIAL-LLSGATIVDQ 70 (266)
Q Consensus 4 ~~TV~V~NLs~~-----~Te~dL~efFs~cG~I~~I~l~~d~~-------~~~~AyVtF~~~~aa~tAL-lLng~~l~g~ 70 (266)
+++|++.|+-.. --++||++.|+.||+|.+|.|..+.. ..|++||+|.++++|..|+ .|||..++||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 689999998532 24799999999999999999998742 2489999999999999999 6999999999
Q ss_pred eEEEEeC
Q 024507 71 IVSITPA 77 (266)
Q Consensus 71 ~I~V~~a 77 (266)
.|+|..+
T Consensus 100 ~i~v~~~ 106 (118)
T 3ue2_A 100 KVVAEVY 106 (118)
T ss_dssp ECEEEEE
T ss_pred EEEEEEc
Confidence 9999875
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=9.2e-10 Score=86.04 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=58.9
Q ss_pred cEEEEeCCC-------CcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeC
Q 024507 5 RTVQVKNVS-------DLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPA 77 (266)
Q Consensus 5 ~TV~V~NLs-------~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a 77 (266)
+.+.|.-.. +.+++++|+++|+.||+|.+|.|.. ..+|||||+|+++++|+.|+.. +..+.|++|+|..+
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~--~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a 87 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS--KKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWL 87 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES--SSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECS
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc--CCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEc
Confidence 466666544 5689999999999999999999983 4578999999999999999964 34478999999865
Q ss_pred C
Q 024507 78 E 78 (266)
Q Consensus 78 ~ 78 (266)
.
T Consensus 88 ~ 88 (100)
T 2d9o_A 88 E 88 (100)
T ss_dssp S
T ss_pred c
Confidence 3
No 203
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=6.6e-10 Score=90.40 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=64.2
Q ss_pred CCccEEEEeCCCCc-ccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecC-hHHHHHHH-Hh--cCCeecCeeEEEEe
Q 024507 2 QQTRTVQVKNVSDL-AHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKD-AKALEIAL-LL--SGATIVDQIVSITP 76 (266)
Q Consensus 2 ~~~~TV~V~NLs~~-~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~-~~aa~tAL-lL--ng~~l~g~~I~V~~ 76 (266)
-.+.-|+|+||++. +++++|+++|+.+|+|.+|.+..++. +|||.|.+ +.+|..|+ .| +|.+|.|..++++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 34678999999999 99999999999999999999987754 79999999 78888888 57 47889999999876
Q ss_pred C
Q 024507 77 A 77 (266)
Q Consensus 77 a 77 (266)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.02 E-value=4e-10 Score=106.00 Aligned_cols=71 Identities=14% Similarity=0.257 Sum_probs=61.4
Q ss_pred ccEEEEeC--CCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeec---Ce--eEEEE
Q 024507 4 TRTVQVKN--VSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIV---DQ--IVSIT 75 (266)
Q Consensus 4 ~~TV~V~N--Ls~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~---g~--~I~V~ 75 (266)
++++||+| |+..+||++|+++|+.||+|++|.|.. .++||||+|++.++|+.|+ .|||..+. |+ +|.|.
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 47999999 578999999999999999999998865 3689999999999999999 59999984 44 56665
Q ss_pred eC
Q 024507 76 PA 77 (266)
Q Consensus 76 ~a 77 (266)
-.
T Consensus 95 ~~ 96 (345)
T 3tht_A 95 FV 96 (345)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.00 E-value=1.2e-09 Score=87.30 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=62.7
Q ss_pred ccEEEEeCCCCcc----------cHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeE
Q 024507 4 TRTVQVKNVSDLA----------HEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIV 72 (266)
Q Consensus 4 ~~TV~V~NLs~~~----------Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I 72 (266)
++.|.+.|+=..- -++||++.|+.||+|.+|.|.++. ..|++||+|+++++|..|+ .|||..++||.|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4678888875422 356899999999999999997654 4799999999999999999 699999999999
Q ss_pred EEEeC
Q 024507 73 SITPA 77 (266)
Q Consensus 73 ~V~~a 77 (266)
.|..+
T Consensus 86 ~v~~~ 90 (114)
T 3s6e_A 86 TAAYV 90 (114)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99875
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=5.2e-09 Score=81.33 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=60.1
Q ss_pred cEEEEeCCCC----cccH----HHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEe
Q 024507 5 RTVQVKNVSD----LAHE----REIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITP 76 (266)
Q Consensus 5 ~TV~V~NLs~----~~Te----~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~ 76 (266)
.||.|...+. +.-+ .+|.+.|+.||+|..+++..+. +||+|.+.++|.+|+.|||..+.||.|+|..
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~l 82 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----MWVTFLEGSSALNVLSLNGKELLNRTITIAL 82 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----EEEEESSHHHHHHGGGGTTCEETTEEEEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----EEEEECChHHHHHHHhcCCeEeCCeEEEEEe
Confidence 5888888762 3333 6799999999999999999764 9999999999999999999999999999998
Q ss_pred CC
Q 024507 77 AE 78 (266)
Q Consensus 77 a~ 78 (266)
+.
T Consensus 83 kt 84 (91)
T 2dnr_A 83 KS 84 (91)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.5e-08 Score=79.40 Aligned_cols=68 Identities=24% Similarity=0.242 Sum_probs=59.8
Q ss_pred cEEEEeCCCCc-----ccH----HHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEE
Q 024507 5 RTVQVKNVSDL-----AHE----REIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSIT 75 (266)
Q Consensus 5 ~TV~V~NLs~~-----~Te----~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~ 75 (266)
.||.|..+++. .-+ .+|.+.|+.||+|..+++..++ +||+|.+.++|.+|+.|||..+.||.|+|.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----MLVTFADSHSALSVLDVDGMKVKGRAVKIS 90 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----EEEECSCSHHHHHHHHGGGSEETTEEEEEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----EEEEEcChHHHHHHHhcCCeeeCCeEEEEe
Confidence 69999988754 222 5699999999999999999774 999999999999999999999999999998
Q ss_pred eC
Q 024507 76 PA 77 (266)
Q Consensus 76 ~a 77 (266)
..
T Consensus 91 ~k 92 (95)
T 1ufw_A 91 GP 92 (95)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.36 E-value=8.4e-07 Score=76.27 Aligned_cols=63 Identities=24% Similarity=0.217 Sum_probs=55.4
Q ss_pred ccHHHHHHHcccCCceeEEEEEecCC-------CCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeCC
Q 024507 16 AHEREIHEFFSFSGDIERIEILREYG-------QSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPAE 78 (266)
Q Consensus 16 ~Te~dL~efFs~cG~I~~I~l~~d~~-------~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a~ 78 (266)
-.+++|++.|+.+|+|.++.+.++.. ..|++||+|.+.++|.+|+ .|||..++||.|.|..+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 46789999999999999999986531 3589999999999999999 699999999999998753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.6e-06 Score=69.84 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=64.9
Q ss_pred CccEEEEeCCCCcccHHHHHHHcccC-----CceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEe
Q 024507 3 QTRTVQVKNVSDLAHEREIHEFFSFS-----GDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITP 76 (266)
Q Consensus 3 ~~~TV~V~NLs~~~Te~dL~efFs~c-----G~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~ 76 (266)
+.++|-+-|||..+++..|+.|.... |.|..|-|.+| .+-|.|+|.|...|-+|. .|||.+|.||.|++..
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 36899999999999999999999999 99999999987 568999999998877775 6999999999999975
Q ss_pred C
Q 024507 77 A 77 (266)
Q Consensus 77 a 77 (266)
.
T Consensus 97 v 97 (117)
T 2l9w_A 97 I 97 (117)
T ss_dssp H
T ss_pred H
Confidence 3
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=3.5e-05 Score=61.09 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=62.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHccc----C-CceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCeeEEEEeCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSF----S-GDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPAE 78 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~----c-G~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~~I~V~~a~ 78 (266)
.++|.|.|||+.+.++.|.-||.. . |+|++|+... +.|+|+|.++..+++.|......|.+.+|.|.|+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLAQADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCC
Confidence 579999999999999999999976 2 5899999864 68999999999999999888999999999999853
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.84 E-value=0.00011 Score=59.45 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=61.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecC-eeEEEEeCCC
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVD-QIVSITPAEN 79 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g-~~I~V~~a~~ 79 (266)
.+.|.|-+.|+.. -..|..+|+.||+|.+.... .....-+|.|.++.+|+.||..||..|+| --|-|.++.+
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECCC
Confidence 4689999999996 56777888999999998872 23579999999999999999999999986 5688888643
No 212
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.04 E-value=0.00077 Score=55.46 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=57.0
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeE-EEEEec--------------CC--CCcEEEEEecChHHHHHHHHhcCCe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIER-IEILRE--------------YG--QSKTAFVTFKDAKALEIALLLSGAT 66 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~-I~l~~d--------------~~--~~~~AyVtF~~~~aa~tALlLng~~ 66 (266)
..-|.|-+.|+..+ ..|-++|+.||.|.. +.+.+. +. ....-.|+|.++.+|..||..||..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 35799999966665 566678899999865 332210 00 1457899999999999999999999
Q ss_pred ecCeeEEEEeCC
Q 024507 67 IVDQIVSITPAE 78 (266)
Q Consensus 67 l~g~~I~V~~a~ 78 (266)
|+|.-|-|.|+.
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999999999874
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.79 E-value=0.0036 Score=49.49 Aligned_cols=72 Identities=10% Similarity=0.084 Sum_probs=61.5
Q ss_pred ccEEEEeCCCCcc-c----HHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 4 TRTVQVKNVSDLA-H----EREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 4 ~~TV~V~NLs~~~-T----e~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
.+|++|+||++.+ . .+.++++|..++++.+....+. .+-.-|.|.++++|..|- .|+|..+.|..|+|--+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFg 81 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEEec
Confidence 5799999999866 2 2577999999999999888754 567899999999999885 79999999999999776
Q ss_pred C
Q 024507 78 E 78 (266)
Q Consensus 78 ~ 78 (266)
+
T Consensus 82 q 82 (104)
T 1wey_A 82 Q 82 (104)
T ss_dssp C
T ss_pred C
Confidence 5
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.57 E-value=0.011 Score=45.54 Aligned_cols=66 Identities=12% Similarity=0.257 Sum_probs=55.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCC-----CCcEEEEEecChHHHHHHH-HhcCCeecCe
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYG-----QSKTAFVTFKDAKALEIAL-LLSGATIVDQ 70 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~-----~~~~AyVtF~~~~aa~tAL-lLng~~l~g~ 70 (266)
..|.|.+|||..||+++.+-++...++........+- ....|||.|.+++.+..-. .++|..+.|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4789999999999999999999999888777765441 2468999999998888766 6999998765
No 215
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.32 E-value=0.002 Score=62.78 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=47.9
Q ss_pred ccEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCeecCe
Q 024507 4 TRTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGATIVDQ 70 (266)
Q Consensus 4 ~~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~l~g~ 70 (266)
.|+|+|. .++..++.+|.++|+.+|+|.++.+..+. .-+|.|+|.+.+++..++...+....+.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~~~~~p~~~~ 116 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQNGTHTPXXXX 116 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHSSCCCCCCBC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHhccCCCcccc
Confidence 4899998 79999999999999999999999998653 4799999999999998776555444443
No 216
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.58 E-value=0.06 Score=42.22 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=42.4
Q ss_pred EEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH
Q 024507 7 VQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL 61 (266)
Q Consensus 7 V~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl 61 (266)
|++-++|+.+...||.+.|+.||- ..|+-+.|. .|||.|.+++.+..||.
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fgg-v~I~WidDT----sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDDT----SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCS-CCCEEEETT----EEEEECSCHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhccCC-EEEEEEcCC----eEEEEecCHHHHHHHHH
Confidence 555599999999999999999994 456666554 79999999999999885
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.55 E-value=0.065 Score=42.10 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=43.4
Q ss_pred EEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHH-hc
Q 024507 7 VQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALL-LS 63 (266)
Q Consensus 7 V~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALl-Ln 63 (266)
|++-++|+.+...||.+.|+.||- ..|.-+.|. .|||.|.+++.+..||. ++
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidDT----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDDT----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEE-EEEEEEETT----EEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCC-EEEEEEcCC----eEEEEecCHHHHHHHHHhcc
Confidence 555599999999999999999993 456666654 79999999999999985 44
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.99 E-value=0.088 Score=40.98 Aligned_cols=66 Identities=11% Similarity=0.187 Sum_probs=47.1
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecC-----CCCcEEEEEecChHHHHHHH-HhcCCeecCe
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREY-----GQSKTAFVTFKDAKALEIAL-LLSGATIVDQ 70 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~-----~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~ 70 (266)
-.|.|.+|||..||+++.+-++.+=++........+ .....|||.|.+++.+..-. ..+|..+.|.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 468999999999999987766654343332222211 12357999999999888866 6999988765
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=87.49 E-value=0.5 Score=37.53 Aligned_cols=40 Identities=13% Similarity=0.002 Sum_probs=28.6
Q ss_pred EEEEEecC-CCCcEEEEEecChHHHHHHH-HhcCCeecCeeE
Q 024507 33 RIEILREY-GQSKTAFVTFKDAKALEIAL-LLSGATIVDQIV 72 (266)
Q Consensus 33 ~I~l~~d~-~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I 72 (266)
++.|..++ ...|++||+|.+++.|+.|+ .+++....+..+
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~ 43 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEW 43 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEE
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcc
Confidence 45666665 35799999999999999999 466544333333
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=84.58 E-value=0.67 Score=36.66 Aligned_cols=42 Identities=10% Similarity=-0.030 Sum_probs=34.6
Q ss_pred EEecC-CCCcEEEEEecChHHHHHHH-Hh-cCCeecCeeEEEEeCC
Q 024507 36 ILREY-GQSKTAFVTFKDAKALEIAL-LL-SGATIVDQIVSITPAE 78 (266)
Q Consensus 36 l~~d~-~~~~~AyVtF~~~~aa~tAL-lL-ng~~l~g~~I~V~~a~ 78 (266)
|..++ ...|+++|+|.+++.|+.|+ .| ||..|+| .|.+..+.
T Consensus 5 l~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 5 LILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp EEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred eeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 33343 34789999999999999999 68 9999999 99998654
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.00 E-value=3.7 Score=39.91 Aligned_cols=53 Identities=19% Similarity=0.359 Sum_probs=41.9
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHH-Hhc
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIAL-LLS 63 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLn 63 (266)
..++|+ +++.+...+|.+.|+.||. .+|+.+.+ ..|||.|.+++.+..+| .++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS----SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC----CeEEEEECCHHHHHHHHHHHH
Confidence 455565 8999999999999999995 45555433 47999999999999988 354
No 222
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=65.53 E-value=12 Score=31.76 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=43.3
Q ss_pred EEEEeCCCC-c--------ccHHHHHHHc--ccCCceeEEEEEecCCCCcEEEEEecCh-HHHHHHHHhcC
Q 024507 6 TVQVKNVSD-L--------AHEREIHEFF--SFSGDIERIEILREYGQSKTAFVTFKDA-KALEIALLLSG 64 (266)
Q Consensus 6 TV~V~NLs~-~--------~Te~dL~efF--s~cG~I~~I~l~~d~~~~~~AyVtF~~~-~aa~tALlLng 64 (266)
++.|-|++. . -+..+|++.| +.+.+++-..+....+..++|.|.|.+. .+...|+.|..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fek 84 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFDK 84 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHHHH
Confidence 678899987 2 2347899977 7676766555555557789999999875 57888886653
No 223
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.80 E-value=23 Score=26.59 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=39.6
Q ss_pred EEEEeCCCCcccHHHHHHHcc-cCC-ceeEEEEEecCCCCcEEEEEecChHHH
Q 024507 6 TVQVKNVSDLAHEREIHEFFS-FSG-DIERIEILREYGQSKTAFVTFKDAKAL 56 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs-~cG-~I~~I~l~~d~~~~~~AyVtF~~~~aa 56 (266)
.-++-.+++.++..+|++.+. .|| +|.+|....-+...+.|||++...+.+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a 76 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSA 76 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcH
Confidence 457777889999999998886 366 788888876655567899999876543
No 224
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=47.55 E-value=5.1 Score=34.63 Aligned_cols=68 Identities=9% Similarity=0.127 Sum_probs=47.4
Q ss_pred CCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecC---hHHH----HHHHHhcCCee---cCeeEEEEeCCC
Q 024507 12 VSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKD---AKAL----EIALLLSGATI---VDQIVSITPAEN 79 (266)
Q Consensus 12 Ls~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~---~~aa----~tALlLng~~l---~g~~I~V~~a~~ 79 (266)
++.+....+|++||..++++..+.++-++.-.|.-.+.|.+ ++.+ ...|..+|-.+ +|..+.|.+..+
T Consensus 9 ~sl~f~~~~i~~vl~~la~~~g~n~vvd~~V~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~~ 86 (241)
T 3ezj_A 9 FTANFKDTDLKSFIETVGANLNKTIIMGPGVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSA 86 (241)
T ss_dssp BCCEEEEEEHHHHHHHHHHHHTCEEEC---CCCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC--
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCeEEECCCCcceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhHH
Confidence 45566677899999999999999999888666777777764 3333 34456888665 589999998754
No 225
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=41.42 E-value=44 Score=24.93 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=39.1
Q ss_pred EEEEeCCCCcccHHHHHHHcc-cCC-ceeEEEEEecCCCCcEEEEEecChHH
Q 024507 6 TVQVKNVSDLAHEREIHEFFS-FSG-DIERIEILREYGQSKTAFVTFKDAKA 55 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs-~cG-~I~~I~l~~d~~~~~~AyVtF~~~~a 55 (266)
.-++-.+++.++..+|++.+. .|| +|.+|.-..-+...+.|||++...+.
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~ 74 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDD 74 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCc
Confidence 456778899999999998886 345 78888877665556789999987764
No 226
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=28.99 E-value=28 Score=27.52 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=45.4
Q ss_pred cccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChH---HHHHHHHhcC--CeecCeeEEEEeC
Q 024507 15 LAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAK---ALEIALLLSG--ATIVDQIVSITPA 77 (266)
Q Consensus 15 ~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~---aa~tALlLng--~~l~g~~I~V~~a 77 (266)
+...-+|+++|...+++..+.++-+++-.|.-.+.+.+.. ++...|..+| ....|..|.|.|.
T Consensus 37 nf~da~i~~vl~~la~~tg~NiV~d~~V~G~VTl~l~~v~~~~al~~iL~~~gl~~~~~gnvi~I~p~ 104 (128)
T 4ar0_A 37 DFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPR 104 (128)
T ss_dssp EEEEEEHHHHHHHHHHTTCCEEEECTTCCCEEEEEEEEEEHHHHHHHHHHHHTEEEEEETTEEEEEEH
T ss_pred EEeCCCHHHHHHHHHHHHCCcEEEcCCCCceeeEeecCCCHHHHHHHHHHHcCceEEEECCEEEEECh
Confidence 3444568999999899999999988876777788887752 3333344666 3457889999874
No 227
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=27.94 E-value=1.1e+02 Score=24.90 Aligned_cols=55 Identities=25% Similarity=0.258 Sum_probs=41.0
Q ss_pred EEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCCCCcEEEEEecChH-HHHHHH
Q 024507 6 TVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYGQSKTAFVTFKDAK-ALEIAL 60 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~-cG-~I~~I~l~~d~~~~~~AyVtF~~~~-aa~tAL 60 (266)
.-+|-.+++.++..+|++.+.. || +|..|..+.-.+..+.|||++...+ +.+-|-
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 4567778899999999977753 45 7888888766656778999998764 555553
No 228
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=26.61 E-value=71 Score=26.39 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=40.6
Q ss_pred EEEEeCCCCcccHHHHHHHccc-CC-ceeEEEEEecCCCCcEEEEEecChH-HHHHHH
Q 024507 6 TVQVKNVSDLAHEREIHEFFSF-SG-DIERIEILREYGQSKTAFVTFKDAK-ALEIAL 60 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs~-cG-~I~~I~l~~d~~~~~~AyVtF~~~~-aa~tAL 60 (266)
.-+|--+++.++..+|++.+.. || +|..|..+.-++..+.|||++...+ +.+-|-
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 3566778899999999977753 45 6888888766655778999998664 455453
No 229
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=25.20 E-value=27 Score=24.36 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=37.6
Q ss_pred CcccHHHHHHHcccCC-----ceeEEEEEecCCCCcEEEEEecChHHHHHHH-HhcCCeecCeeEEEEeC
Q 024507 14 DLAHEREIHEFFSFSG-----DIERIEILREYGQSKTAFVTFKDAKALEIAL-LLSGATIVDQIVSITPA 77 (266)
Q Consensus 14 ~~~Te~dL~efFs~cG-----~I~~I~l~~d~~~~~~AyVtF~~~~aa~tAL-lLng~~l~g~~I~V~~a 77 (266)
..+.+.+|..++..-| .|-.|++. ..+.||+-.... ++.++ .|++..+.|+.+.|.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEEC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECHHH-HHHHHHHhccccCcCceEEEEEC
Confidence 4567788888887544 35677775 348899888754 44555 79999999999998865
No 230
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=23.51 E-value=72 Score=26.41 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=39.8
Q ss_pred EEEEeCCCCcccHHHHHHHcc-cCC-ceeEEEEEecCCCCcEEEEEecChH-HHHHH
Q 024507 6 TVQVKNVSDLAHEREIHEFFS-FSG-DIERIEILREYGQSKTAFVTFKDAK-ALEIA 59 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs-~cG-~I~~I~l~~d~~~~~~AyVtF~~~~-aa~tA 59 (266)
.-+|-.+++.++..+|++.+. .|| +|..|..+.-++..+.|||++...+ +.+-|
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvA 146 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVA 146 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHH
Confidence 356677888999999997775 345 6888888766555778999998764 45444
No 231
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.40 E-value=1.2e+02 Score=25.16 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=40.7
Q ss_pred EEEEeCCCCcccHHHHHHHcc-cCC-ceeEEEEEecCCCCcEEEEEecChHH-HHHH
Q 024507 6 TVQVKNVSDLAHEREIHEFFS-FSG-DIERIEILREYGQSKTAFVTFKDAKA-LEIA 59 (266)
Q Consensus 6 TV~V~NLs~~~Te~dL~efFs-~cG-~I~~I~l~~d~~~~~~AyVtF~~~~a-a~tA 59 (266)
..|+-.+++.++..+|++.+. .|| +|..|..+.-.+..+.|||++...+. .+-+
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~ 150 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHH
Confidence 356777889999999998886 345 78888887766557889999987754 4433
No 232
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=22.95 E-value=1.7e+02 Score=19.24 Aligned_cols=58 Identities=7% Similarity=-0.040 Sum_probs=45.2
Q ss_pred cEEEEeCCCCcccHHHHHHHcccCCceeEEEEEecCCCCcEEEEEecChHHHHHHHHhcCCe
Q 024507 5 RTVQVKNVSDLAHEREIHEFFSFSGDIERIEILREYGQSKTAFVTFKDAKALEIALLLSGAT 66 (266)
Q Consensus 5 ~TV~V~NLs~~~Te~dL~efFs~cG~I~~I~l~~d~~~~~~AyVtF~~~~aa~tALlLng~~ 66 (266)
.++.|.|+.-.--...|...+.. --|..+.+-. ..+.+.|+|.+++.+..++.--|..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~---~~~~~~v~~~~~~~i~~~i~~~Gy~ 64 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL---NEAVVAGNKEDVDKYIKAVEAAGYQ 64 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS---SEEEEEEEGGGHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc---cCCEEEEEECCHHHHHHHHHHcCCc
Confidence 57899999999899999999988 7788887742 2567889998667777777655544
Done!