BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024508
         (266 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C6DAW7|ARNB_PECCP UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
           OS=Pectobacterium carotovorum subsp. carotovorum (strain
           PC1) GN=arnB PE=3 SV=1
          Length = 382

 Score = 32.7 bits (73), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 99  FTLKDGSVTPVHKAANPPVRANVLYLSPKYSVP-ISDAVKRIFSPHFDKVIWFQNSSLYH 157
            T K  ++ PVH A  P     +  LS +Y +P I DA   + + + D+ I  + ++++ 
Sbjct: 118 ITPKTKAIIPVHYAGAPADLTALRTLSERYGIPLIEDAAHAVGTQYRDEWIGARGTAIFS 177

Query: 158 FSMFHASHHISPVPA----TEDEIEAE 180
              FHA  +I+        T+DE  AE
Sbjct: 178 ---FHAIKNITCAEGGMVVTDDEALAE 201


>sp|A4SQW7|ARNB_AERS4 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
           OS=Aeromonas salmonicida (strain A449) GN=arnB PE=3 SV=1
          Length = 378

 Score = 32.3 bits (72), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 94  LLSDIFTLKDGSVTPVHKAANPPVRANVLYLSPKYSVP-ISDAVKRIFSPHFDKVIWFQN 152
           L++ + T+   ++ PVH A  P     +L L+ +Y +P I DA   I + + D+ I    
Sbjct: 113 LIAPLITVNTKAIIPVHYAGAPVDLDPILKLARQYDIPVIEDAAHAIGTRYRDRWIGATG 172

Query: 153 SSLYHF 158
           ++++ F
Sbjct: 173 TAIFSF 178


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.133    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,815,978
Number of Sequences: 539616
Number of extensions: 3926297
Number of successful extensions: 9928
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9926
Number of HSP's gapped (non-prelim): 6
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)