BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024509
(266 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TX2|A Chain A, Structure Of A Probable 6-Phosphogluconolactonase From
Mycobacterium Abscessus
Length = 251
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 127/250 (50%), Gaps = 18/250 (7%)
Query: 16 HESVEELSTNLADYIADLSEASVKERGVFAIALSGGSL-IGLMGKLCEAPYNKTVDWAKW 74
+ + L T D +A ++ ERG I L+GG I L+ L + +DW
Sbjct: 13 YADTDALVTAAGDRLASAITGALAERGKAMIVLTGGGTGIALLKHLRDVASG--LDWTNV 70
Query: 75 YIFWADERVVAKNHSDSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEY--EFDIR 132
++FW D+R V K + N A E LL V ++H++ +S S EY + D
Sbjct: 71 HVFWGDDRYVPKTDPERNAWQAWEALLEHVNFPLRNMHAMPNSES------EYGTDLDAA 124
Query: 133 QLVKTRMVCVS--DISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKP 190
L +++ + DCP FD+ LLGMG +GH+ SLFP+ + + V + DSPKP
Sbjct: 125 ALAYEQLLAANAEPGQDCPAFDVHLLGMGGEGHINSLFPHTDAVKETQRLVVAVPDSPKP 184
Query: 191 PPERITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGP-NCPSLPARMAQPTNGKLVW 249
PP+RIT TLP I + +GE+KA+AV A+ P + P+ A+ + T VW
Sbjct: 185 PPQRITLTLPAIQRSREVWLVVSGEAKADAVAAAVGGADPVDVPAAGAKGIERT----VW 240
Query: 250 FLDKPAASKL 259
LD+ AAS+L
Sbjct: 241 LLDEAAASQL 250
>pdb|3ICO|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|C Chain C, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
pdb|3ICO|D Chain D, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Tuberculosis
Length = 268
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 12/224 (5%)
Query: 41 RGVFAIALSGG-SLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEG 99
RG I L+GG + I L+ L + ++W+K ++FW DER V ++ + N K A+
Sbjct: 54 RGQALIVLTGGGNGIALLRYLSA--QAQQIEWSKVHLFWGDERYVPEDDDERNLKQARRA 111
Query: 100 LLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISD--CPKFDLILLG 157
LL+ V I + VH ++A + + D L +++ S P FD+ LLG
Sbjct: 112 LLNHVDIPSNQVHP----MAASDGDFGGDLDAAALAYEQVLAASAAPGDPAPNFDVHLLG 167
Query: 158 MGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIXXXXXTGESK 217
MG +GH+ SLFP+ + + V + DSPKPPP RIT TLP I + +G K
Sbjct: 168 MGPEGHINSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPGK 227
Query: 218 AEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKLQS 261
A+AV AI G + S+PA A L W LD+ AA+KL S
Sbjct: 228 ADAVAAAIG--GADPVSVPAAGAVGRQNTL-WLLDRDAAAKLPS 268
>pdb|3OC6|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Mycobacterium Smegmatis, Apo Form
Length = 248
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 10/234 (4%)
Query: 27 ADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAK 86
D + D +++ ERG I L+GG + K + +DW+K +I+W DER V +
Sbjct: 24 GDRLVDAISSAIGERGQATIVLTGGGTGIGLLKRVRE-RSGEIDWSKVHIYWGDERFVPQ 82
Query: 87 NHSDSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDIS 146
+ + N K A+E LL + I P +VH++ + S E D+ E + ++ + S
Sbjct: 83 DDDERNDKQAREALLDHIGIPPVNVHAM--AASDGEFGDDLEAAAAGYAQ--LLSANFDS 138
Query: 147 DCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSAS 206
P FD+ LLGMG +GHV SLFP+ + + V ++DSPKPPP RIT TLP + ++
Sbjct: 139 SVPGFDVHLLGMGGEGHVNSLFPDTDAVRETERLVVGVSDSPKPPPRRITLTLPAVQNSR 198
Query: 207 IXXXXXTGESKAEAVHLAIDDLGP-NCPSLPARMAQPTNGKLVWFLDKPAASKL 259
+GE+KA+AV A+ P + P+ A + T VW +D+ AA+KL
Sbjct: 199 EVWLVVSGEAKADAVAAAVGGADPVDIPAAGAVGRERT----VWLVDEAAAAKL 248
>pdb|1Y89|A Chain A, Crystal Structure Of Devb Protein
pdb|1Y89|B Chain B, Crystal Structure Of Devb Protein
Length = 238
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 11/215 (5%)
Query: 46 IALSGGSLIGLMGKLCEA-PYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKV 104
I+LSGGS + KL + PY + W + +W DER VA + ++SNY A L SK+
Sbjct: 33 ISLSGGSTPKXLFKLLASQPYANDIQWKNLHFWWGDERCVAPDDAESNYGEANALLFSKI 92
Query: 105 PIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHV 164
++H I + A+ + ++ T + P FD ILLG+G+DGH
Sbjct: 93 NXPAQNIHRILGENEPQAEAERFAQAXAHVIPTE-------NGTPVFDWILLGVGADGHT 145
Query: 165 ASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIXXXXXTGESKAEAVHLA 224
ASLFP + D + +S + P+ R++ T V+ +A G KAE V
Sbjct: 146 ASLFPGQT--DYADANLSVVASHPESGQLRVSKTAKVLQAAKRISYLVLGAGKAEIVEQI 203
Query: 225 IDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKL 259
P PA T+G W+LD AA+K+
Sbjct: 204 HTTPAEQLP-YPAAKIHSTSGVTEWYLDSDAAAKI 237
>pdb|3E7F|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With 6-Phosphogluconic Acid
pdb|3E7F|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With 6-Phosphogluconic Acid
Length = 265
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 117/260 (45%), Gaps = 16/260 (6%)
Query: 13 LRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLM-GKLCEAPYNKTVDW 71
+ +H + +ELS I ++ EAS ++ +IAL+GGS + +L + N +
Sbjct: 6 ISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGGSTPKMTYARLHDEHLNLLREK 65
Query: 72 AKWYIFWADERVVAKNHSDSNYKLAKEGLLSKVP---IVPSHVHSINDSLSAEEA----- 123
F DER+V + +DSNY +A+E LL +P + P ++ S A A
Sbjct: 66 RALRFFMGDERMVPADSTDSNYNMAREVLLHDIPDDLVFPFDTSAVTPSAEATSADAMRV 125
Query: 124 ADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQW--- 180
A+ Y + L+ + V + P FD++LLG+GSDGH AS+FP +
Sbjct: 126 AEAYGKQLASLLPLKSVGEAG-PKVPVFDVVLLGLGSDGHTASIFPGSQAEKETDGKVVV 184
Query: 181 -VSFITDSPKPPPERITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGPNCPSLPARM 239
V F +++ KP R+T + I A TG K V + D P AR
Sbjct: 185 SVGFPSETMKPKVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTAHKAPV--ARF 242
Query: 240 AQPTNGKLVWFLDKPAASKL 259
+ G + + LDK A L
Sbjct: 243 LRGCEGNVSFLLDKEIAENL 262
>pdb|2J0E|A Chain A, Three Dimensional Structure And Catalytic Mechanism Of 6-
Phosphogluconolactonase From Trypanosoma Brucei
pdb|2J0E|B Chain B, Three Dimensional Structure And Catalytic Mechanism Of 6-
Phosphogluconolactonase From Trypanosoma Brucei
pdb|3EB9|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With Citrate
pdb|3EB9|B Chain B, Crystal Structure Of 6-Phosphogluconolactonase From
Trypanosoma Brucei Complexed With Citrate
Length = 266
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 117/260 (45%), Gaps = 16/260 (6%)
Query: 13 LRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLM-GKLCEAPYNKTVDW 71
+ +H + +ELS I ++ EAS ++ +IAL+GGS + +L + N +
Sbjct: 7 ISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGGSTPKMTYARLHDEHLNLLREK 66
Query: 72 AKWYIFWADERVVAKNHSDSNYKLAKEGLLSKVP---IVPSHVHSINDSLSAEEA----- 123
F DER+V + +DSNY +A+E LL +P + P ++ S A A
Sbjct: 67 RALRFFMGDERMVPADSTDSNYNMAREVLLHDIPDDLVFPFDTSAVTPSAEATSADAMRV 126
Query: 124 ADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQW--- 180
A+ Y + L+ + V + P FD++LLG+GSDGH AS+FP +
Sbjct: 127 AEAYGKQLASLLPLKSVGEAG-PKVPVFDVVLLGLGSDGHTASIFPGSQAEKETDGKVVV 185
Query: 181 -VSFITDSPKPPPERITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGPNCPSLPARM 239
V F +++ KP R+T + I A TG K V + D P AR
Sbjct: 186 SVGFPSETMKPKVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTAHKAPV--ARF 243
Query: 240 AQPTNGKLVWFLDKPAASKL 259
+ G + + LDK A L
Sbjct: 244 LRGCEGNVSFLLDKEIAENL 263
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154)
From Thermotoga Maritima At 1.70a Resolution
Length = 232
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 26/220 (11%)
Query: 35 EASVKERGVFAIALSGGSL-IGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNY 93
E ++E+ + L+GG + + KL E + W + + F +DER V + SN+
Sbjct: 38 EKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKF----PWNRIHFFLSDERYVPLDSDQSNF 93
Query: 94 KLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDL 153
+ E L S+ I +VH ++ SL E+A ++YE +IR S +FDL
Sbjct: 94 RNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIR-------------SATDQFDL 140
Query: 154 ILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIXXXXXT 213
+LGMG DGHVAS+F + K+ V+F S P R+T T +N++
Sbjct: 141 AILGMGPDGHVASIFDLET--GNKDNLVTFTDPSGDPKVPRVTLTFRALNTSLYVLFLIR 198
Query: 214 GESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDK 253
G+ K + + D LPA + K VWF+ K
Sbjct: 199 GKEKINRLTEILKD-----TPLPAYFVRGKE-KTVWFVGK 232
>pdb|1PBT|A Chain A, The Crystal Structure Of Tm1154, Oxidoreductase, SolDEVB
Family From Thermotoga Maritima
Length = 244
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 101/220 (45%), Gaps = 26/220 (11%)
Query: 35 EASVKERGVFAIALSGGSL-IGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNY 93
E ++E+ + L+GG + + KL E + W + + F +DER V + SN+
Sbjct: 48 EKLLEEKDKIFVVLAGGRTPLPVYEKLAEQKF----PWNRIHFFLSDERYVPLDSDQSNF 103
Query: 94 KLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDL 153
+ E L S+ I +VH ++ SL E+A ++YE +IR S +FDL
Sbjct: 104 RNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIR-------------SATDQFDL 150
Query: 154 ILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIXXXXXT 213
+LG G DGHVAS+F + K+ V+F S P R+T T +N++
Sbjct: 151 AILGXGPDGHVASIFDLET--GNKDNLVTFTDPSGDPKVPRVTLTFRALNTSLYVLFLIR 208
Query: 214 GESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDK 253
G+ K + + D LPA + K VWF+ K
Sbjct: 209 GKEKINRLTEILKD-----TPLPAYFVRGKE-KTVWFVGK 242
>pdb|3LHI|A Chain A, Crystal Structure Of Putative 6-
Phosphogluconolactonase(Yp_207848.1) From Neisseria
Gonorrhoeae Fa 1090 At 1.33 A Resolution
Length = 232
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 36/236 (15%)
Query: 16 HESVEELSTNLADYIADLSEASVKERGVFAIALSGG-SLIGLMGKLCEAPYNKTVDWAKW 74
+E+ E + +LAD +AD + ++ E+G +A+SGG S I L + K +DW
Sbjct: 8 YENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRSPIAFFNALSQ----KDLDWKNV 63
Query: 75 YIFWADERVVAKNHSDSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQL 134
I ADER+V NH+DSN L +E LL + + D + E
Sbjct: 64 GITLADERIVPTNHADSNTGLVREYLLKNKAAAAVWIPXVEDGKTETE------------ 111
Query: 135 VKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPN----HSVLDVKNQWVSFITDSP-K 189
+ V + + D+++LG G+DGH AS+FP + +D + V+ + +P
Sbjct: 112 LHPDAVVDYALKHYKQPDVLILGXGNDGHTASIFPKAPQFQTAID-GSAGVALVHTTPVT 170
Query: 190 PPPERITFTLPVI-------------NSASIXXXXXTGESKAEAVHLAIDDLGPNC 232
P ERI+ TL I ++ GE++ + L ++ G NC
Sbjct: 171 APHERISXTLDAIAHTGHVFLAIQGEEKKAVFDQAAQGENREYPISLVLNHQGVNC 226
>pdb|3CSS|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Leishmania Guyanensis
Length = 267
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 113/262 (43%), Gaps = 25/262 (9%)
Query: 13 LRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWA 72
++I E++ ++S + I +A V + +ALSGGS +L E + K +
Sbjct: 8 VKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGST---PKRLYEELHEKDLALL 64
Query: 73 KWY---IFWADERVVAKNHSDSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADE--- 126
+ + DER+++++ SN+ +A + LL VP S V SI+ + + DE
Sbjct: 65 QQHAVQFILGDERLLSEDDEQSNFSMATKALLRDVP--SSDVISIDRRAALATSKDEKGG 122
Query: 127 ----------YEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDV 176
YE + + + + + S P D++LLG GSDGH AS+FP+
Sbjct: 123 LDGAWAVAQDYEVKLLNCLPCKQINGTAKS-VPVVDIVLLGFGSDGHTASIFPDSVAATD 181
Query: 177 KNQWVSFITDSPKPPPE--RITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGPNCPS 234
+ VS SP P+ R+T + VI A G+ K V + + P P
Sbjct: 182 EEHVVSVSFPSPTMSPKVWRVTLSKTVIQYAKHVVVLAAGKDKNWVVRGVLSE-SPTDPL 240
Query: 235 LPARMAQPTNGKLVWFLDKPAA 256
+R + G + LD A
Sbjct: 241 PVSRFLRDCRGSVTLLLDPGAG 262
>pdb|3CH7|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Leishmania Braziliensis
Length = 266
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 113/262 (43%), Gaps = 25/262 (9%)
Query: 13 LRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWA 72
++I E++ ++S + I +A V + +ALSGGS +L E + K +
Sbjct: 7 VKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGST---PKRLYEELHEKDLALL 63
Query: 73 KWY---IFWADERVVAKNHSDSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADE--- 126
+ + DER+++++ SN+ +A + LL VP S V SI+ + + DE
Sbjct: 64 QQHAVQFILGDERLLSEDDEQSNFSMATKALLRDVP--SSDVISIDRRAALATSKDEKGG 121
Query: 127 ----------YEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDV 176
YE + + + + + S P D++LLG GSDGH AS+FP+
Sbjct: 122 LDGAWAVAQDYEVKLLNCLPCKQINGTAKS-VPVVDIVLLGFGSDGHTASIFPDSVAATD 180
Query: 177 KNQWVSFITDSPKPPPE--RITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGPNCPS 234
+ VS SP P+ R+T + VI A G+ K V + + P P
Sbjct: 181 EEHVVSVSFPSPTMSPKVWRVTLSKTVIQYAKHVVVLAAGKDKNWVVRGVLSE-SPTDPL 239
Query: 235 LPARMAQPTNGKLVWFLDKPAA 256
+R + G + LD A
Sbjct: 240 PVSRFLRDCRGSVTLLLDPGAG 261
>pdb|3LWD|A Chain A, Crystal Structure Of Putative 6-Phosphogluconolactonase
(Yp_574786.1) From Chromohalobacter Salexigens Dsm 3043
At 1.88 A Resolution
Length = 226
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 98/231 (42%), Gaps = 22/231 (9%)
Query: 16 HESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWY 75
E + L+ LAD +A EA + +R + +SGGS A K + WA+
Sbjct: 7 QEGRQRLAERLADTVAQALEADLAKRERALLVVSGGSTPKPFFTSLAA---KALPWARVD 63
Query: 76 IFWADERVVAKNHSDSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQLV 135
+ ADER V + +DSN +L +E LL P + H + EA E V
Sbjct: 64 VTLADERWVTADDADSNARLVRETLLVG-PAAEACFHPLTTDDDTPEAGVET-------V 115
Query: 136 KTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVS--FITDSPKPPPE 193
R+ + + ++LG G DGH ASLFP+ L + S + +P P
Sbjct: 116 AERLESLPWPASA-----VILGXGGDGHTASLFPDSEQLATALETTSAAVVVHAPSVPQA 170
Query: 194 RITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGPNCPSLPAR--MAQP 242
RIT + + A + TG K + A+ G + LP R ++QP
Sbjct: 171 RITLSASRLADAGLHVLHITGNDKRRVLAEAL--AGDDVRQLPIRAFLSQP 219
>pdb|3NWP|A Chain A, Crystal Structure Of A 6-Phosphogluconolactonase
(Sbal_2240) From Shewanella Baltica Os155 At 1.40 A
Resolution
pdb|3NWP|B Chain B, Crystal Structure Of A 6-Phosphogluconolactonase
(Sbal_2240) From Shewanella Baltica Os155 At 1.40 A
Resolution
Length = 233
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 20/223 (8%)
Query: 22 LSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADE 81
L LA IA + +V RG ++ +SGGS KL + K++DW+ YI ADE
Sbjct: 17 LEQQLASKIASQLQEAVDARGKASLVVSGGST---PLKLFQLLSXKSIDWSDVYITLADE 73
Query: 82 RVVAKNHSDSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVC 141
R V + SN +L +E LL N + +A+ + F +
Sbjct: 74 RWVEADADASNERLVREHLLQ------------NRASNAKFRGLKNXFSTAEAGADXA-- 119
Query: 142 VSDISDCPK-FDLILLGMGSDGHVASLFPNHSVLD--VKNQWVSFITDSPKPPPERITFT 198
+S+ P+ FD+++LG G+DGH S FP + L+ + Q + T+ P RIT +
Sbjct: 120 AESLSNFPRPFDVVVLGXGNDGHTCSWFPCSAELENALTTQALCVATNPTTAPHGRITLS 179
Query: 199 LPVINSASIXXXXXTGESKAEAVHLAIDDLGPNCPSLPARMAQ 241
I ++ GE K A++ + + A +AQ
Sbjct: 180 KSAILNSRQIYLHLVGEQKLSVYRQALESDDVHAXPIRAVLAQ 222
>pdb|3E15|A Chain A, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|B Chain B, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|C Chain C, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|D Chain D, 6-Phosphogluconolactonase From Plasmodium Vivax
Length = 312
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 76/199 (38%), Gaps = 41/199 (20%)
Query: 39 KERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKE 98
KE G I LSGG + K + +D +K F DER +H SNY K
Sbjct: 57 KEGGHVVIGLSGGKTPIDVYKNIALVKDIKIDTSKLIFFIIDERYKRDDHKFSNYNNIKF 116
Query: 99 GLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGM 158
S ++ + S + E +Y I+ VK K D+ +LG
Sbjct: 117 LFESLKINEKEQLYRPDTSKNIVECVRDYNEKIKNXVKKY----------TKVDIAILGX 166
Query: 159 GSDGHVASLFPN-------------------------------HSVLDVKNQWVSFITDS 187
GSD H+ASLFPN + LD+ ++V F T +
Sbjct: 167 GSDFHIASLFPNIFFNIYXNNYQNSYIYDESSIKVANSNDTSDNDNLDLLKEYVYFTTTN 226
Query: 188 PKPPPERITFTLPVINSAS 206
+RIT +L ++ +AS
Sbjct: 227 NFDVRKRITVSLDLLGNAS 245
>pdb|2RI0|A Chain A, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) From S. Mutans
pdb|2RI0|B Chain B, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) From S. Mutans
Length = 234
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 152 DLILLGMGSDGHVA-----SLFPNHS-VLDVKNQWVS----FITDSPKPPPERITFTLPV 201
DL +LG+G + H+ + F + + ++D+ ++ F + P + I+ L
Sbjct: 120 DLQILGIGRNAHIGFNEPGTAFSSQTHLVDLTPSTIAANSRFFEKAEDVPKQAISMGLAS 179
Query: 202 INSASIXXXXXTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAAS 257
I SA + GE KAEAV + GP +PA + Q T+ K++ +D+ A +
Sbjct: 180 IMSAKMILLMAFGEEKAEAVAAMVK--GPVTEEIPASILQ-THPKVILIVDEKAGA 232
>pdb|2RI1|A Chain A, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) With Glcn6p From S. Mutans
pdb|2RI1|B Chain B, Crystal Structure Of Glucosamine 6-Phosphate Deaminase
(Nagb) With Glcn6p From S. Mutans
Length = 235
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 152 DLILLGMGSDGHVA-----SLFPNHS-VLDVKNQWVS----FITDSPKPPPERITFTLPV 201
DL +LG+G + H+ + F + + ++D+ ++ F + P + I+ L
Sbjct: 121 DLQILGIGRNAHIGFNEPGTAFSSQTHLVDLTPSTIAANSRFFEKAEDVPKQAISMGLAS 180
Query: 202 INSASIXXXXXTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKL 259
I SA + GE KAEAV + GP +PA + Q T+ K++ +D+ A + +
Sbjct: 181 IMSAKMILLMAFGEEKAEAVAAMVK--GPVTEEIPASILQ-THPKVILIVDEKAGAGI 235
>pdb|3HN6|A Chain A, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|B Chain B, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|C Chain C, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|D Chain D, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|E Chain E, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
pdb|3HN6|F Chain F, Crystal Structure Of Glucosamine-6-phosphate Deaminase
From Borrelia Burgdorferi
Length = 289
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 27/229 (11%)
Query: 12 ELRIHESVEELSTNLADYIAD-LSEASVKERGVFAIAL-SGGSLIGLMGKLCEAPYNKTV 69
L I + E++S A+++A ++E S + F + L +G S IG+ L E NK +
Sbjct: 23 RLIIRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNLIELNKNKKI 82
Query: 70 DWAKWYIFWADERV-VAKNHSDSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEYE 128
+ F DE + + +NH +S + S + I +++ +N + S
Sbjct: 83 SFQNVITFNMDEYIGIEENHPESYHSFMWNNFFSHIDIKKENINILNGNAS--------- 133
Query: 129 FDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLD-------VKNQWV 181
L K I L + G+G DGH+A P S+ ++ +
Sbjct: 134 ----NLKKECEEYEKKIKSFGGIMLFVGGIGPDGHIAFNEPGSSLTSRTRIKTLTQDTII 189
Query: 182 S----FITDSPKPPPERITFTLPVINSASIXXXXXTGESKAEAVHLAID 226
+ F D K P +T + I + G +KA A+ AI+
Sbjct: 190 ANSRFFEGDVNKVPKNALTVGIGTIMDSQEVLIIVNGHNKARALKHAIE 238
>pdb|1NE7|A Chain A, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|B Chain B, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|C Chain C, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|D Chain D, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|E Chain E, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|F Chain F, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
Length = 289
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 31/231 (13%)
Query: 44 FAIALSGGSL-IGLMGKLCEAPYNKTVDWAKWYIFWADERV-VAKNHSDSNYKLAKEGLL 101
F + L GS +G KL E N + + F DE V + ++H +S +
Sbjct: 35 FTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRDHPESYHSFMWNNFF 94
Query: 102 SKVPIVPSHVHSIN-DSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGS 160
+ I P + H ++ +++ + D +E I +L + G+G
Sbjct: 95 KHIDIHPENTHILDGNAVDLQAECDAFE--------------EKIKAAGGIELFVGGIGP 140
Query: 161 DGHVASLFPNHSVLD---VKNQWVS--------FITDSPKPPPERITFTLPVINSASIXX 209
DGH+A P S++ VK + F + K P +T + + A
Sbjct: 141 DGHIAFNEPGSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVM 200
Query: 210 XXXTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKLQ 260
TG KA A++ AI++ + ++ A P + V+ D+ A +L+
Sbjct: 201 ILITGAHKAFALYKAIEEGVNHMWTVSAFQQHP---RTVFVCDEDATLELK 248
>pdb|1HOR|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOR|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|A Chain A, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1DEA|B Chain B, Structure And Catalytic Mechanism Of Glucosamine
6-Phosphate Deaminase From Escherichia Coli At 2.1
Angstroms Resolution
pdb|1HOT|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1HOT|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucosamine-6-Phosphate
pdb|1CD5|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T Conformer
pdb|1FQO|A Chain A, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FQO|B Chain B, Glucosamine 6-Phosphate Deaminase Complexed With The
Substrate Of The Reverse Reaction Fructose 6-Phosphate
(Open Form)
pdb|1FRZ|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FRZ|B Chain B, Glucosamine-6-Phosphate Deaminase From E.Coli, R
Conformer. Complexed With The Allosteric Activator
N-Acetyl-Glucosamine-6-Phosphate At 2.2 A Resolution
pdb|1FS5|A Chain A, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS5|B Chain B, A Discovery Of Three Alternate Conformations In The Active
Site Of Glucosamine-6-Phosphate Isomerase
pdb|1FS6|A Chain A, Glucosamine-6-phosphate Deaminase From E.coli, T
Conformer, At 2.2a Resolution
pdb|1FSF|A Chain A, Glucosamine-6-Phosphate Deaminase From E.Coli, T
Conformer, At 1.9a Resolution
pdb|2WU1|A Chain A, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites.
pdb|2WU1|B Chain B, Glucosamine-6-Phosphate Deaminase Complexed With The
Allosteric Activator N-Acetyl-Glucoamine-6-Phosphate
Both In The Active And Allosteric Sites
Length = 266
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 17/125 (13%)
Query: 44 FAIAL-SGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV-VAKNHSDSNYKLAKEGLL 101
F + L +GG+ + L E V + F DE V + K H +S Y
Sbjct: 35 FVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFF 94
Query: 102 SKVPIVPSHVHSINDSLSAEEA-ADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGS 160
V I +++ +N + +A +YE IR K L + G+G+
Sbjct: 95 DHVDIPAENINLLNGNAPDIDAECRQYEEKIRSY--------------GKIHLFMGGVGN 140
Query: 161 DGHVA 165
DGH+A
Sbjct: 141 DGHIA 145
>pdb|1JT9|A Chain A, Structure Of The Mutant F174a T Form Of The
Glucosamine-6-Phosphate Deaminase From E.Coli
Length = 266
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 17/125 (13%)
Query: 44 FAIAL-SGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV-VAKNHSDSNYKLAKEGLL 101
F + L +GG+ + L E V + F DE V + K H +S Y
Sbjct: 35 FVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFF 94
Query: 102 SKVPIVPSHVHSINDSLSAEEA-ADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGS 160
V I +++ +N + +A +YE IR K L + G+G+
Sbjct: 95 DHVDIPAENINLLNGNAPDIDAECRQYEEKIRSY--------------GKIHLFMGGVGN 140
Query: 161 DGHVA 165
DGH+A
Sbjct: 141 DGHIA 145
>pdb|3CTK|A Chain A, Crystal Structure Of The Type 1 Rip Bouganin
Length = 248
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 132 RQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQW 180
+++ K ++ + +S+ +F I + G S PN VL+++N W
Sbjct: 150 QEIAKFFLIVIQMVSEAARFKYIETEVVDRGLYGSFKPNFKVLNLENNW 198
>pdb|2UZZ|A Chain A, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|B Chain B, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|C Chain C, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|D Chain D, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
Length = 372
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 150 KFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSFITDSPKPP 191
K+DLI++G GS G A + + L+V +TD+ PP
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATRAGLNV------LMTDAHMPP 37
>pdb|2BKV|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKV|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
Length = 242
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 102/254 (40%), Gaps = 34/254 (13%)
Query: 17 ESVEELSTNLADYIADLSEASVKER--GVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKW 74
++ EELS A AD ++KE+ V +A +GG+ G +L + + +
Sbjct: 7 QTYEELSQIAARITAD----TIKEKPDAVLGLA-TGGTPEGTYRQLIRLHQTENLSFQNI 61
Query: 75 YIFWADERV-VAKNHSDSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQ 133
DE ++ + +S + + + PS H I + AD+ E + R+
Sbjct: 62 TTVNLDEYAGLSSDDPNSYHFYMNDRFFQHIDSKPSR-HFIPNG-----NADDLEAECRR 115
Query: 134 LVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHS------VLDVKNQW----VSF 183
+ V + D D+ LLG+G +GH+ P S V+ + Q +
Sbjct: 116 YEQ----LVDSLGDT---DIQLLGIGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQANARY 168
Query: 184 ITDSPKPPPERITFTLPVINSASIXXXXXTGESKAEAVHLAIDDLGPNCPSLPARMAQPT 243
P + +T + I S+ +G+SKAEAV ++ G PA A
Sbjct: 169 FPSIDSVPKKALTMGIQTILSSKRILLLISGKSKAEAVRKLLE--GNISEDFPAS-ALHL 225
Query: 244 NGKLVWFLDKPAAS 257
+ + +D+ AAS
Sbjct: 226 HSDVTVLIDREAAS 239
>pdb|1GZ7|A Chain A, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|B Chain B, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|C Chain C, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|D Chain D, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
Length = 534
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 15 IHESVEELSTNLADYIADLSEASVKERGVF-AIALSGGSLIGLMGKLC 61
IH S E+ T +A Y +D+++ S + G+F AI + L+G L
Sbjct: 367 IHASDAEIDTLMAAYTSDITQGSPFDTGIFNAITPQFKRISALLGDLA 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,844,640
Number of Sequences: 62578
Number of extensions: 309317
Number of successful extensions: 897
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 33
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)