Query 024509
Match_columns 266
No_of_seqs 153 out of 1048
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:07:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02360 probable 6-phosphoglu 100.0 1.1E-66 2.4E-71 463.6 28.6 263 1-266 1-268 (268)
2 TIGR01198 pgl 6-phosphoglucono 100.0 1.2E-64 2.6E-69 442.1 24.8 231 15-259 1-233 (233)
3 KOG3147 6-phosphogluconolacton 100.0 1.2E-61 2.6E-66 413.2 25.8 241 10-261 8-250 (252)
4 PTZ00285 glucosamine-6-phospha 100.0 5E-62 1.1E-66 430.7 24.1 235 11-263 1-251 (253)
5 COG0363 NagB 6-phosphogluconol 100.0 5.7E-61 1.2E-65 418.1 21.3 231 11-260 1-237 (238)
6 cd01400 6PGL 6PGL: 6-Phosphogl 100.0 6.3E-59 1.4E-63 402.7 24.0 218 20-251 1-219 (219)
7 TIGR00502 nagB glucosamine-6-p 100.0 3E-58 6.6E-63 407.9 22.6 232 11-260 1-248 (259)
8 PRK09762 galactosamine-6-phosp 100.0 6.9E-58 1.5E-62 399.2 20.6 222 11-253 1-232 (232)
9 PRK12358 putative 6-phosphoglu 100.0 4.5E-56 9.7E-61 389.6 20.2 222 11-260 1-238 (239)
10 PRK02122 glucosamine-6-phospha 100.0 1.9E-55 4.2E-60 430.3 25.0 239 7-263 24-278 (652)
11 PF01182 Glucosamine_iso: Gluc 100.0 1.1E-55 2.3E-60 377.3 15.7 197 22-226 1-199 (199)
12 PRK00443 nagB glucosamine-6-ph 100.0 2.1E-47 4.6E-52 338.6 22.7 231 11-260 1-248 (261)
13 cd01399 GlcN6P_deaminase GlcN6 100.0 5.9E-45 1.3E-49 317.1 19.2 217 21-259 2-232 (232)
14 KOG3148 Glucosamine-6-phosphat 100.0 1.8E-45 4E-50 301.7 14.0 231 11-260 1-248 (273)
15 cd00458 SugarP_isomerase Sugar 100.0 3.1E-40 6.7E-45 275.1 16.0 168 24-251 2-169 (169)
16 COG2390 DeoR Transcriptional r 98.1 0.00019 4.1E-09 65.6 16.1 201 20-260 94-317 (321)
17 PF04198 Sugar-bind: Putative 97.8 6.4E-05 1.4E-09 66.7 7.2 201 21-259 33-253 (255)
18 PRK15418 transcriptional regul 97.3 0.017 3.8E-07 52.8 16.4 53 192-260 262-314 (318)
19 COG0037 MesJ tRNA(Ile)-lysidin 80.0 27 0.00059 31.0 11.0 53 31-87 7-63 (298)
20 COG0519 GuaA GMP synthase, PP- 77.5 12 0.00026 33.7 7.5 102 28-135 9-113 (315)
21 PF01171 ATP_bind_3: PP-loop f 67.1 14 0.0003 30.6 5.4 60 43-107 1-60 (182)
22 TIGR00730 conserved hypothetic 65.1 20 0.00043 29.9 5.9 45 38-83 93-138 (178)
23 PF03641 Lysine_decarbox: Poss 62.1 6.7 0.00014 31.0 2.4 44 40-83 52-96 (133)
24 PF14417 MEDS: MEDS: MEthanoge 57.4 1.1E+02 0.0024 25.4 12.1 120 12-136 22-151 (191)
25 PF11019 DUF2608: Protein of u 51.8 47 0.001 29.3 6.2 89 37-132 92-199 (252)
26 KOG0347 RNA helicase [RNA proc 50.3 30 0.00066 34.2 5.1 82 11-98 265-367 (731)
27 TIGR00884 guaA_Cterm GMP synth 47.5 47 0.001 30.3 5.7 52 29-86 5-56 (311)
28 PRK02090 phosphoadenosine phos 43.5 51 0.0011 28.7 5.2 46 32-83 30-76 (241)
29 COG1611 Predicted Rossmann fol 41.9 89 0.0019 26.7 6.3 47 37-83 106-154 (205)
30 TIGR03728 glyco_access_1 glyco 41.0 2.6E+02 0.0056 25.0 9.0 104 9-133 157-262 (265)
31 PRK10696 tRNA 2-thiocytidine b 40.5 1.6E+02 0.0035 25.7 8.0 44 39-83 27-71 (258)
32 cd00553 NAD_synthase NAD+ synt 40.0 1E+02 0.0022 26.9 6.5 59 18-82 2-60 (248)
33 KOG3363 Uncharacterized conser 39.9 18 0.0004 29.9 1.6 21 149-169 110-130 (196)
34 KOG0331 ATP-dependent RNA heli 37.1 1.4E+02 0.0029 29.5 7.3 98 7-114 162-277 (519)
35 PF09623 Cas_NE0113: CRISPR-as 36.9 1.3E+02 0.0028 26.2 6.6 39 21-59 91-130 (224)
36 PLN02347 GMP synthetase 36.2 93 0.002 30.7 6.2 52 32-88 220-271 (536)
37 PRK13980 NAD synthetase; Provi 36.1 1.2E+02 0.0026 26.8 6.4 57 18-82 9-67 (265)
38 PRK00074 guaA GMP synthase; Re 35.5 98 0.0021 30.3 6.2 50 30-85 205-254 (511)
39 PF00098 zf-CCHC: Zinc knuckle 35.1 23 0.0005 18.0 1.0 12 158-169 6-17 (18)
40 PRK10590 ATP-dependent RNA hel 34.8 1.6E+02 0.0034 28.1 7.4 64 12-83 78-159 (456)
41 COG1606 ATP-utilizing enzymes 34.1 1.5E+02 0.0032 26.5 6.4 50 32-86 8-57 (269)
42 COG1205 Distinct helicase fami 33.2 1.2E+02 0.0027 31.7 6.8 115 12-131 118-256 (851)
43 KOG1800 Ferredoxin/adrenodoxin 33.1 1.1E+02 0.0023 29.3 5.6 23 150-172 108-130 (468)
44 TIGR00273 iron-sulfur cluster- 31.9 3.5E+02 0.0075 26.0 9.1 49 7-63 61-111 (432)
45 PF14824 Sirohm_synth_M: Siroh 31.8 47 0.001 19.4 2.0 17 41-57 2-19 (30)
46 PTZ00323 NAD+ synthase; Provis 31.3 73 0.0016 28.9 4.3 33 18-52 25-57 (294)
47 COG0513 SrmB Superfamily II DN 30.9 1.2E+02 0.0026 29.6 6.0 76 12-91 102-194 (513)
48 PRK01297 ATP-dependent RNA hel 30.8 1.6E+02 0.0034 28.2 6.7 65 11-83 164-247 (475)
49 cd01993 Alpha_ANH_like_II This 30.5 1.7E+02 0.0037 23.5 6.1 38 43-81 1-39 (185)
50 cd00293 USP_Like Usp: Universa 30.4 1.7E+02 0.0036 21.1 5.6 22 150-171 93-114 (130)
51 TIGR03642 cas_csx13 CRISPR-ass 30.3 1.5E+02 0.0033 23.3 5.4 42 17-59 65-108 (124)
52 PRK00768 nadE NAD synthetase; 30.0 76 0.0016 28.4 4.1 30 18-51 17-48 (268)
53 TIGR02432 lysidine_TilS_N tRNA 29.6 3.1E+02 0.0067 22.3 7.7 61 43-108 1-61 (189)
54 PRK00876 nadE NAD synthetase; 29.1 2.2E+02 0.0049 26.2 7.1 60 18-82 11-70 (326)
55 PLN00206 DEAD-box ATP-dependen 29.0 2.1E+02 0.0045 27.9 7.3 65 11-83 198-280 (518)
56 COG0171 NadE NAD synthase [Coe 27.8 3.5E+02 0.0076 24.2 7.9 65 18-84 4-68 (268)
57 TIGR01307 pgm_bpd_ind 2,3-bisp 27.7 4.9E+02 0.011 25.5 9.4 115 14-131 71-203 (501)
58 TIGR00434 cysH phosophoadenyly 27.5 1.3E+02 0.0028 25.3 5.0 41 35-81 6-47 (212)
59 PRK00919 GMP synthase subunit 27.1 1.6E+02 0.0035 26.8 5.8 49 31-85 12-60 (307)
60 PF02540 NAD_synthase: NAD syn 27.0 58 0.0013 28.5 2.8 46 32-81 7-54 (242)
61 PLN02772 guanylate kinase 26.9 52 0.0011 31.2 2.6 56 202-258 131-194 (398)
62 TIGR00552 nadE NAD+ synthetase 26.5 2.7E+02 0.0058 24.2 6.9 35 27-61 6-42 (250)
63 PF08218 Citrate_ly_lig: Citra 25.7 3.1E+02 0.0067 23.1 6.6 98 36-136 21-134 (182)
64 PTZ00110 helicase; Provisional 25.3 1.8E+02 0.0038 28.7 6.1 64 12-83 206-287 (545)
65 PRK10660 tilS tRNA(Ile)-lysidi 25.2 1.1E+02 0.0024 29.2 4.6 51 32-83 6-56 (436)
66 TIGR01536 asn_synth_AEB aspara 25.1 5.4E+02 0.012 24.5 9.3 45 18-62 230-274 (467)
67 TIGR02584 cas_NE0113 CRISPR-as 24.8 1.7E+02 0.0038 25.1 5.1 36 23-58 99-135 (209)
68 TIGR00329 gcp_kae1 metallohydr 24.0 1.1E+02 0.0025 27.5 4.2 36 24-59 240-276 (305)
69 TIGR00268 conserved hypothetic 23.9 1.9E+02 0.0042 25.1 5.6 43 33-81 4-46 (252)
70 TIGR03723 bact_gcp putative gl 23.9 1.1E+02 0.0024 27.8 4.1 43 19-61 232-279 (314)
71 PF02698 DUF218: DUF218 domain 23.8 1.2E+02 0.0026 23.9 3.9 28 87-117 80-107 (155)
72 TIGR03722 arch_KAE1 universal 23.3 1.1E+02 0.0025 27.7 4.1 33 24-56 224-256 (322)
73 PF07429 Glyco_transf_56: 4-al 22.3 6.3E+02 0.014 23.7 8.6 93 9-117 53-147 (360)
74 cd01986 Alpha_ANH_like Adenine 22.0 3.2E+02 0.0069 19.9 6.7 35 45-85 2-36 (103)
75 KOG3716 Carnitine O-acyltransf 21.6 3.7E+02 0.008 27.4 7.3 78 73-165 406-496 (764)
76 PRK09604 UGMP family protein; 21.6 1.3E+02 0.0027 27.7 4.0 43 19-61 227-274 (332)
77 PRK11192 ATP-dependent RNA hel 21.5 4.6E+02 0.01 24.5 8.0 62 13-82 77-156 (434)
78 PRK08576 hypothetical protein; 21.4 3.8E+02 0.0082 25.8 7.3 60 18-83 206-270 (438)
79 KOG3697 Adaptor protein SHC an 21.4 2E+02 0.0044 26.1 5.0 72 3-82 78-151 (345)
80 cd01997 GMP_synthase_C The C-t 21.0 2.9E+02 0.0063 25.0 6.2 50 44-98 2-51 (295)
81 PF09793 AD: Anticodon-binding 20.7 89 0.0019 22.9 2.3 41 49-90 29-72 (91)
82 PRK13981 NAD synthetase; Provi 20.3 2.8E+02 0.0061 27.1 6.4 57 19-83 260-318 (540)
83 PRK05434 phosphoglyceromutase; 20.2 7.7E+02 0.017 24.2 9.3 115 14-131 75-207 (507)
84 cd01713 PAPS_reductase This do 20.2 1.3E+02 0.0028 23.5 3.5 37 44-83 2-38 (173)
85 PRK11634 ATP-dependent RNA hel 20.1 3.9E+02 0.0086 26.9 7.5 63 13-82 78-158 (629)
No 1
>PLN02360 probable 6-phosphogluconolactonase
Probab=100.00 E-value=1.1e-66 Score=463.56 Aligned_cols=263 Identities=82% Similarity=1.272 Sum_probs=231.3
Q ss_pred CCCCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecc
Q 024509 1 MAFSGVHRDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWAD 80 (266)
Q Consensus 1 ~~~~~~~~~~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~D 80 (266)
||+|-|..+.+++++|+|.+++++.+|+.|.+.+++++++++.++|+|||||+|..++.|.......+++|++|+|||+|
T Consensus 1 ~~~~~~~~~~~~l~i~~~~~el~~~~a~~i~~~~~~a~~~~~~~~lalsGGS~~~~~~~L~~~~~~~~idW~~v~~f~~D 80 (268)
T PLN02360 1 MAHSYVHKDRGEIRVHENLDELSTDLAEYIAELSEASVKERGVFAIALSGGSLISFMGKLCEAPYNKTVDWAKWYIFWAD 80 (268)
T ss_pred CCccccccCCceEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHhccccccCCCCceEEEEeee
Confidence 89999988999999999999999999999999999999999999999999998876667765544567999999999999
Q ss_pred eeecCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCC
Q 024509 81 ERVVAKNHSDSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGS 160 (266)
Q Consensus 81 Er~vp~~~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~ 160 (266)
|||||++|++||++++|++||++++++++|+|++++..+++++|++|+++|+++++.........++.|+||+++||||+
T Consensus 81 ER~Vp~~~~~SN~~~~r~~Ll~~~~i~~~~i~~~~~~~~~~~~a~~ye~~l~~~~~~~~~~~~~~~~~p~fDlvlLGmG~ 160 (268)
T PLN02360 81 ERVVAKNHADSNYKLAKDGLLSKVPVVPSHVYSINDTVTAEEAATDYEFAIRQLVKTRTIGVSDISDCPKFDLILLGMGS 160 (268)
T ss_pred cccCCCCCcchHHHHHHHHhhccCCCChhhcccCCCCCCHHHHHHHHHHHHHHHhhccccccccccCCCcccEEEEccCC
Confidence 99999999999999999999999999999999999888899999999999988643111000011135789999999999
Q ss_pred CCceeccCCCCCccccccceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHh----CCCCCCcccc
Q 024509 161 DGHVASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAID----DLGPNCPSLP 236 (266)
Q Consensus 161 DGHiAslfP~~~~~~~~~~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~----~~~~~~~~~P 236 (266)
||||||||||++.+.+...+++.+.+++++|++|||||++.|++||+|+|+++|++|++++++++. ++. +.++|
T Consensus 161 DGHtASlFPg~~~l~~~~~~v~~~~~~~~~p~~RITlt~~~i~~A~~i~llv~G~~Ka~al~~~l~~~~~~~~--~~~~P 238 (268)
T PLN02360 161 DGHVASLFPNHPALEEKDDWVTFITDSPKPPPERITFTLPVINSASNVAVVATGESKANAVHLAIDDVTEGPD--APSLP 238 (268)
T ss_pred CCceeccCCCCchhhhccceEEeecCCCCCCCceEEEcHHHHhcCCeEEEEEeCccHHHHHHHHHhhccCCCC--cccCC
Confidence 999999999998776665677667677889999999999999999999999999999999999996 443 57899
Q ss_pred cccccccC-CeEEEEecHHHHhccccccccC
Q 024509 237 ARMAQPTN-GKLVWFLDKPAASKLQSVQFCE 266 (266)
Q Consensus 237 as~l~~~~-~~~~~~~D~~Aa~~l~~~~~~~ 266 (266)
++.++. | ++++|++|++|+++|..+||-|
T Consensus 239 as~l~~-~~~~~~w~~D~~Aa~~l~~~~~~~ 268 (268)
T PLN02360 239 ARMVQP-TKGKLVWFLDKPAASKLDGFQFSE 268 (268)
T ss_pred hhhhcC-CCCcEEEEECHHHHhhCcccccCC
Confidence 999994 5 5999999999999999999876
No 2
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=100.00 E-value=1.2e-64 Score=442.10 Aligned_cols=231 Identities=42% Similarity=0.643 Sum_probs=211.3
Q ss_pred EeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHH
Q 024509 15 IHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYK 94 (266)
Q Consensus 15 v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~ 94 (266)
+|+|.+++++.+|++|.+.+++++++++.++|+||||+||..+|+.|.. .+++|+||+||++||||||++|++||++
T Consensus 1 v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~lalsGGstp~~~y~~L~~---~~i~w~~v~~f~~DER~Vp~~~~~SN~~ 77 (233)
T TIGR01198 1 VFSNSAELAEALAERIATKLQTALAERGQFSLALSGGRSPIALLEALAA---QPLDWSRIHLFLGDERYVPLDHADSNTG 77 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCccHHHHHHHHhh---CCCCcceEEEEEecccccCCCCccchHH
Confidence 5899999999999999999999999999999999999999999988775 2799999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCeEeCCCCC-CHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccCCCCCc
Q 024509 95 LAKEGLLSKVPIVPSHVHSINDSL-SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSV 173 (266)
Q Consensus 95 ~l~~~ll~~~~i~~~~v~~~~~~~-d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~ 173 (266)
++|++||+++++|++|+|++++.. +++++|++|++.|++.++.. +.|.||+++||||+||||||||||++.
T Consensus 78 ~~~~~Ll~~~~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~~~~~~--------~~p~fDl~lLGmG~DGHtASlFPg~~~ 149 (233)
T TIGR01198 78 LAREALLDRVAIPASNIHPMPTELSDIEEAAELYEQELAAAFQPI--------VFPVFDLLLLGMGPDGHTASLFPHTPA 149 (233)
T ss_pred HHHHHHhccCCCChhheeeCCCccCCHHHHHHHHHHHHHHhhccc--------CCCcccEEEECCcCCccceeCCCCChh
Confidence 999999999999999999999877 79999999999999865311 246899999999999999999999998
Q ss_pred cccccceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHh-CCCCCCcccccccccccCCeEEEEec
Q 024509 174 LDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAID-DLGPNCPSLPARMAQPTNGKLVWFLD 252 (266)
Q Consensus 174 ~~~~~~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~-~~~~~~~~~Pas~l~~~~~~~~~~~D 252 (266)
+.+.+.++....++|++|++|||||++.|++||+|+|+++|++|++++++++. ++. +.++|++.++ .|++++||+|
T Consensus 150 l~~~~~~~~~~~~~~~~p~~RITlt~~~i~~a~~i~~lv~G~~Ka~~~~~~l~~~~~--~~~~Pas~l~-~~~~~~~~~D 226 (233)
T TIGR01198 150 LQETERLVTVLTKSPKPPHERITLTLPAINAARKVFLLIAGEEKRNALAEALAVEAE--PYPLPAAGVL-HSGKTLWLLD 226 (233)
T ss_pred hccccceEEeecCCCCCCCCcEEecHHHHhcCCeEEEEEEChHHHHHHHHHHhcCCC--cccCCHhHcC-CCCcEEEEEC
Confidence 87766676666677889999999999999999999999999999999999998 444 6789999999 6889999999
Q ss_pred HHHHhcc
Q 024509 253 KPAASKL 259 (266)
Q Consensus 253 ~~Aa~~l 259 (266)
++|+++|
T Consensus 227 ~~Aa~~l 233 (233)
T TIGR01198 227 YAAARKL 233 (233)
T ss_pred hHhhhcC
Confidence 9999864
No 3
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-61 Score=413.17 Aligned_cols=241 Identities=55% Similarity=0.868 Sum_probs=225.7
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCCh
Q 024509 10 RGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHS 89 (266)
Q Consensus 10 ~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~ 89 (266)
++++.+|++.+++...+++++.+....+++++|.|+|+|||||.+..|++++.......++|++|+||++|||+||.+|+
T Consensus 8 ~~~~~v~~~~~el~~~l~~~~~~~s~~~~~~~g~F~i~lSGGSLi~~L~~~l~~~~~~~i~w~kW~if~~DER~Vp~~~~ 87 (252)
T KOG3147|consen 8 MVKVIVFSSEEELIEALAGYIAEKSEKALKKRGRFTLALSGGSLIQVLSKLLESPYQDDIDWSKWHIFFVDERVVPLDDP 87 (252)
T ss_pred CceeeecccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCCcHHHHHHHHhcccccCCCCccceEEEEEeccccCCCCC
Confidence 67899999999999999999999999999999999999999999999999887656678999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCCCCeEeCCCCC--CHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceecc
Q 024509 90 DSNYKLAKEGLLSKVPIVPSHVHSINDSL--SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASL 167 (266)
Q Consensus 90 ~Sn~~~l~~~ll~~~~i~~~~v~~~~~~~--d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAsl 167 (266)
+|||+..+++||++++++..|+|++|... +++++++.|++.+.+.+..+ ..|.|||++||||+|||||||
T Consensus 88 dSNyg~~~~~~l~~v~~~~~~i~~id~~L~~~~~~~a~~ye~~l~~~v~~~--------s~p~FDL~LLG~GpDGHtaSL 159 (252)
T KOG3147|consen 88 DSNYGLAKRHFLSKVPIPHYNIYPIDESLIADAEEAADLYEKELKALVAND--------SFPVFDLLLLGMGPDGHTASL 159 (252)
T ss_pred cccHHHHHHhhhhhCCCCcCcEEECChhhccCHHHHHHHHHHHHHHHhccC--------CCcceeEEEeccCCCCCeeec
Confidence 99999999999999999999999999875 69999999999999987542 157899999999999999999
Q ss_pred CCCCCccccccceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccccccccccCCeE
Q 024509 168 FPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKL 247 (266)
Q Consensus 168 fP~~~~~~~~~~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~~~~~ 247 (266)
|||+..+.++.+||+.++++|++|++|||+|+++|+.|+++.|++.|+.|+++++.++... ...+|++++.+..+++
T Consensus 160 FP~~~~l~e~~~wV~~itdSPkpPp~RITlTLPvIn~A~~v~fvv~G~~Ka~iv~~i~~~~---~~~lPaa~V~~~~~~l 236 (252)
T KOG3147|consen 160 FPGHPLLNEKLKWVVPITDSPKPPPKRITLTLPVINHAKNVAFVVCGASKAEIVKAILEDK---EKKLPAALVNPAKGKL 236 (252)
T ss_pred CCCchhhhcccCEEEEeCCCCCCCCccEEEehHHhhhhhceEEEEeCcchhHhHHHHHhcc---cccCCchheeccCCeE
Confidence 9998888899999999999999999999999999999999999999999999999999875 3689999999867899
Q ss_pred EEEecHHHHhcccc
Q 024509 248 VWFLDKPAASKLQS 261 (266)
Q Consensus 248 ~~~~D~~Aa~~l~~ 261 (266)
+||+|++|++++..
T Consensus 237 ~WflD~~A~~~l~~ 250 (252)
T KOG3147|consen 237 VWFLDDDAASKLPV 250 (252)
T ss_pred EEEEchHHhcCCCC
Confidence 99999999998864
No 4
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=5e-62 Score=430.66 Aligned_cols=235 Identities=26% Similarity=0.295 Sum_probs=210.5
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHH-HHHhcCcEEEEEcCCChHHHHHHHhc-ccCCCCCCCCcceEEecceee-cCCC
Q 024509 11 GELRIHESVEELSTNLADYIADLSEA-SVKERGVFAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADERV-VAKN 87 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~-~i~~~~~~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr~-vp~~ 87 (266)
|++++|+|.+++++++|+.|.+.+++ ++++++.++|+||||+||.++|+.|. ..+..+++|++|+||++|||| ||.+
T Consensus 1 m~i~~~~~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgG~tP~~~y~~L~~~~~~~~i~w~~v~if~~DEr~~Vp~~ 80 (253)
T PTZ00285 1 MRIVISEDADAVADYTSNYIIKRINDFKPTSDRPFVLGLPTGSTPLPTYQELIRAYREGRVSFSNVVTFNMDEYVGLPRD 80 (253)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEcCCCCHHHHHHHHHHHHhhcCCchhHeEEECCcEEecCCCC
Confidence 68999999999999999999999999 88999999999999999999997665 444568999999999999999 9999
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCeEeCCCCC-CHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceec
Q 024509 88 HSDSNYKLAKEGLLSKVPIVPSHVHSINDSL-SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVAS 166 (266)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~~-d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAs 166 (266)
|++||+++++++||+++++|++|+|++++.. |++++|++|++.|++. ++||+++||||+||||||
T Consensus 81 ~~~Sn~~~~~~~l~~~~~ip~~~~~~~~~~~~~~~~~~~~y~~~i~~~--------------~~~Dl~lLG~G~DGH~As 146 (253)
T PTZ00285 81 HPQSYHYFMKENFFDHVDIKEENRHILNGTAPDLEEECRRYEEKIRAV--------------GGIDLFLAGIGTDGHIAF 146 (253)
T ss_pred chHHHHHHHHHHHhccCCCCHhhEEcCCCCCcCHHHHHHHHHHHHHHh--------------CCCcEEEeCCCCCCceee
Confidence 9999999999999999999999999998764 8999999999999873 579999999999999999
Q ss_pred cCCCCCccccccceEEe------------ecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcc
Q 024509 167 LFPNHSVLDVKNQWVSF------------ITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPS 234 (266)
Q Consensus 167 lfP~~~~~~~~~~~v~~------------~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~ 234 (266)
||||++.. +.++++.. ..+.+.+|++|||||++.|++||+|+|+++|++|+++++++++++. +.+
T Consensus 147 lfP~~~~~-~~~~~v~~~~~t~~~~~~~~~~~~~~~p~~riTlt~~~i~~a~~i~l~~~G~~K~~~l~~~l~~~~--~~~ 223 (253)
T PTZ00285 147 NEPGSSLD-SRTRVKSLNQETIDANARFFGNDISKVPTMALTVGIRTIMEAREVLLLATGASKAIAVARCVEGGV--THM 223 (253)
T ss_pred cCCCCccC-CceEEEECCHHHHHHHhhhccCCcCCCCCccEEcCHHHHHhCCEEEEEecCHHHHHHHHHHhcCCC--CCc
Confidence 99999863 33333331 1235778899999999999999999999999999999999999865 679
Q ss_pred cccccccccCCeEEEEecHHHHhcccccc
Q 024509 235 LPARMAQPTNGKLVWFLDKPAASKLQSVQ 263 (266)
Q Consensus 235 ~Pas~l~~~~~~~~~~~D~~Aa~~l~~~~ 263 (266)
+|+++|+ .|++++||+|++|++.|...+
T Consensus 224 ~Pas~l~-~~~~~~~~~D~~Aa~~l~~~~ 251 (253)
T PTZ00285 224 CPASALQ-MHPAAVLCLDEDATLELKVKT 251 (253)
T ss_pred cchHHhc-cCCCEEEEEcHHHHhhhhhcc
Confidence 9999999 689999999999999886544
No 5
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-61 Score=418.13 Aligned_cols=231 Identities=41% Similarity=0.603 Sum_probs=206.6
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHh-cccCCCCCCCCcceEEecceeecCCCCh
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLC-EAPYNKTVDWAKWYIFWADERVVAKNHS 89 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll-~~~~~~~i~w~~v~~f~~DEr~vp~~~~ 89 (266)
|++++|++++++++.+++.|.+.+++.++++|+++|+||||+||..+|+.| ...+ +++||++|++||+|||+||.+|+
T Consensus 1 m~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~LsgGsTP~~~ye~L~~~~~-~~~~w~~v~~f~~DEr~vp~~~~ 79 (238)
T COG0363 1 MKLIIFEDAEELAKAAAEIIADKLQAAKAERGRAVLALSGGSTPLALYEALVKLPQ-GQLDWSKVTIFNLDERVVPPDDP 79 (238)
T ss_pred CceEEcCCHHHHHHHHHHHHHHHHHhhhhccCcEEEEECCCCCHHHHHHHHHhhhc-cCCCchheEEEeccccccCCCCc
Confidence 689999999999999999999999999999999999999999999999755 4444 67999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCCCCeEeCCCCCCHHHHHH-HHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccC
Q 024509 90 DSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAAD-EYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLF 168 (266)
Q Consensus 90 ~Sn~~~l~~~ll~~~~i~~~~v~~~~~~~d~~~~a~-~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslf 168 (266)
+||+++|+++||+++.++++|+|.++.. +++++|. +|++.|.+ .++||++|||||+||||||||
T Consensus 80 ~Sn~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~e~~~~ye~~i~~--------------~~~~Dl~lLG~G~DGHias~f 144 (238)
T COG0363 80 ESNYGLMRRNLFDHIDIPAEFIHNGDAS-DPDAECAARYEAKLPS--------------AGGFDLILLGMGEDGHIASLF 144 (238)
T ss_pred hhHHHHHHHHHhccccCcHhhcCCCCcc-ChhHHHHHHHHhhccc--------------cCCCCEEEEcccCCCcccccC
Confidence 9999999999999999999997777655 4444666 99999975 358999999999999999999
Q ss_pred CCCCcccc----ccceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccccccccccC
Q 024509 169 PNHSVLDV----KNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTN 244 (266)
Q Consensus 169 P~~~~~~~----~~~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~~ 244 (266)
|+++.+.. ....+....++|++|.+|||||++.|++||+|+|+++|++|+++++++++++. +..+|+|.|+ .|
T Consensus 145 P~~~~l~~~~~~~~~~~~~~~~~~~~P~~riTlt~~~I~~Ak~v~llv~G~~Ka~al~~~l~~~~--~~~~Pas~l~-~~ 221 (238)
T COG0363 145 PGTPALDSATTEEANSRVFVGDSPKVPKERITLTLPTILDAKEVLLLVTGEEKADALKQALEGPV--TELYPASILQ-LH 221 (238)
T ss_pred CCCcccccccchhhceeeecCCCCCCCcceEEeCHHHHhcCCeEEEEEcCchHHHHHHHHhcCCC--cccccHHHHh-cC
Confidence 99995542 33444455677899999999999999999999999999999999999999987 5669999999 78
Q ss_pred CeEEEEecHHHHhccc
Q 024509 245 GKLVWFLDKPAASKLQ 260 (266)
Q Consensus 245 ~~~~~~~D~~Aa~~l~ 260 (266)
++++|++|++|+++|.
T Consensus 222 ~~~~~~~d~~A~~~l~ 237 (238)
T COG0363 222 PNVTWFLDEEAASLLK 237 (238)
T ss_pred CCeEEEEchHHhhhcc
Confidence 8899999999999875
No 6
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=100.00 E-value=6.3e-59 Score=402.71 Aligned_cols=218 Identities=48% Similarity=0.770 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHHH
Q 024509 20 EELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEG 99 (266)
Q Consensus 20 ~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ 99 (266)
+++++.+|+.|++.+++++++++.++|+||||+||..+|+.+.... +++|++|+||++||||||++|++||++++|++
T Consensus 1 ~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~~y~~L~~~~--~i~w~~v~~f~~DEr~Vp~~~~~Sn~~~~~~~ 78 (219)
T cd01400 1 EALAEALADRIAEALAAAIAKRGRFSLALSGGSTPKPLYELLAAAP--ALDWSKVHVFLGDERCVPPDDPDSNYRLAREA 78 (219)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCeEEEEECCCccHHHHHHHhcccc--CCCCceEEEEEeeccccCCCCcccHHHHHHHH
Confidence 3688999999999999999999999999999999999998776632 69999999999999999999999999999999
Q ss_pred hcCCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccCCCCCcc-cccc
Q 024509 100 LLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVL-DVKN 178 (266)
Q Consensus 100 ll~~~~i~~~~v~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~~-~~~~ 178 (266)
||++++++++|+|++++..+++++|++|++.|++.+. +.|+||+++||||+||||||||||++.+ .+.+
T Consensus 79 ll~~~~~~~~~v~~~~~~~~~~~~a~~y~~~i~~~~~----------~~~~~Dl~lLGmG~DGH~ASlfP~~~~~~~~~~ 148 (219)
T cd01400 79 LLSHVAIPAANIHPIPTELGPEDAAAAYEKELRALFG----------GVPPFDLVLLGMGPDGHTASLFPGHPALLEETD 148 (219)
T ss_pred hhccCCCCHhhEEeCCCCCCHHHHHHHHHHHHHHHhc----------CCCCCCEEEECCcCCCceeecCCCCcccccccC
Confidence 9999999999999999888899999999999997541 2478999999999999999999999876 4555
Q ss_pred ceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccccccccccCCeEEEEe
Q 024509 179 QWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFL 251 (266)
Q Consensus 179 ~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~~~~~~~~~ 251 (266)
.+++.+..++++|.+|||||++.|++|++|+|+++|++|+++++++++++. +.++|+++++....+++|+.
T Consensus 149 ~~v~~~~~~~~~p~~RiTlt~~~i~~a~~i~ll~~G~~K~~~l~~~l~~~~--~~~~Pas~l~~~~~~~~w~~ 219 (219)
T cd01400 149 RLVVAVTDSPKPPPERITLTLPVLNNARRVVFLVTGAEKAEALKRALAGPD--PEELPAARVLPRPGEVLWFL 219 (219)
T ss_pred ceEEEEeCCCCCCCccEEecHHHHhcCCeEEEEEeChhHHHHHHHHHcCCC--CCCCChhhhcCCCCcEEEeC
Confidence 678777766778999999999999999999999999999999999999876 67999999994336788873
No 7
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=100.00 E-value=3e-58 Score=407.88 Aligned_cols=232 Identities=22% Similarity=0.253 Sum_probs=205.4
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHH-HHHhcCcEEEEEcCCChHHHHHHHhc-ccCCCCCCCCcceEEecceee-cCCC
Q 024509 11 GELRIHESVEELSTNLADYIADLSEA-SVKERGVFAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADERV-VAKN 87 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~-~i~~~~~~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr~-vp~~ 87 (266)
|++++|+|.+++++.+|+.|++.+++ ..++++.|+|+||||+||..+|+.|. ..+.++++|++|+||++|||+ ||++
T Consensus 1 m~i~~~~~~~~l~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstP~~~y~~L~~~~~~~~i~w~~v~~f~~DEr~~vp~~ 80 (259)
T TIGR00502 1 MRLIILQTYEELSKWAARHIANRINEFKPTAARPFVLGLPTGGTPIGTYKQLIELHQAGKISFQNVTTFNMDEYAGLSEE 80 (259)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHHhCccccCceEEEEcCCCChHHHHHHHHHHhhccCCchhHeEEEeCeecCCCCCC
Confidence 68999999999999999999999998 55568999999999999999997664 445578999999999999997 9999
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCeEeCCCCC-CHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceec
Q 024509 88 HSDSNYKLAKEGLLSKVPIVPSHVHSINDSL-SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVAS 166 (266)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~~-d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAs 166 (266)
|++||+++++++||+++++|++|+|++++.. +++++|++|++.|++ .++||+++||||+||||||
T Consensus 81 ~~~Sn~~~~~~~l~~~~~i~~~~i~~~~~~~~~~~~~a~~y~~~i~~--------------~~~~Dl~llG~G~DGH~As 146 (259)
T TIGR00502 81 HPESYHSFMHNNFFQHIDIKPENINILNGNAPDLEAECRRYEEKIRS--------------YGGIDLFMGGIGPDGHIAF 146 (259)
T ss_pred chHHHHHHHHHHhcccCCCCHHHEecCCCCccCHHHHHHHHHHHHHH--------------cCCCCEEEEccCCCCceec
Confidence 9999999999999999999999999999764 899999999999986 3689999999999999999
Q ss_pred cCCCCCccccccceEEee------------cCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcc
Q 024509 167 LFPNHSVLDVKNQWVSFI------------TDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPS 234 (266)
Q Consensus 167 lfP~~~~~~~~~~~v~~~------------~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~ 234 (266)
|||+++.... ..++... .+.+.+|++|||||++.|++|++|+++++|++|++++++++.++. +..
T Consensus 147 ~fP~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~p~~riTlt~~~i~~a~~vi~~~~G~~Ka~al~~al~~~~--~~~ 223 (259)
T TIGR00502 147 NEPGSSLTSR-TRIKTLTEDTIQANSRFFEGDVNQVPKYALTVGIGTILDSKEVLILVSGHQKALALQKAVEGGV--NHM 223 (259)
T ss_pred CCCCCCCCCc-eEEEEcchhhHHHHhhhhcCCCCCCCCceEecCHHHHhhCCEEEEEEcCHHHHHHHHHHHcCCC--CCc
Confidence 9999864432 2322210 133567889999999999999999999999999999999999876 679
Q ss_pred cccccccccCCeEEEEecHHHHhccc
Q 024509 235 LPARMAQPTNGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 235 ~Pas~l~~~~~~~~~~~D~~Aa~~l~ 260 (266)
+|+++++ .|++++|++|++|+++|+
T Consensus 224 ~Pas~l~-~~~~~~~~~d~~Aa~~l~ 248 (259)
T TIGR00502 224 WTISALQ-LHKHAIVVCDENATQELK 248 (259)
T ss_pred cchHHhc-cCCCEEEEEcHHHHhhhh
Confidence 9999999 578999999999999874
No 8
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=100.00 E-value=6.9e-58 Score=399.21 Aligned_cols=222 Identities=19% Similarity=0.243 Sum_probs=195.5
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhc-ccCCCCCCCCcceEEeccee-ecCCCC
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADER-VVAKNH 88 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr-~vp~~~ 88 (266)
|++++|+|.+++++.+|++|.+ .+++++.++|+||||+||+.+|+.|. ..+..+++|++|+||++||| +||++|
T Consensus 1 m~i~i~~~~~~~~~~~a~~i~~----~i~~~~~~~l~lsgGstP~~~y~~L~~~~~~~~l~w~~v~~f~~DE~v~vp~~~ 76 (232)
T PRK09762 1 QTLQQVENYTALSERASEYLLA----VIRSKPDAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTM 76 (232)
T ss_pred CeEEEECCHHHHHHHHHHHHHH----HHHHCCCeEEEECCCCCHHHHHHHHHHHHhhcCCCHHHeEEEcCcEEecCCCCc
Confidence 6899999999999999999986 45568999999999999999998665 33456899999999999999 599999
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccC
Q 024509 89 SDSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLF 168 (266)
Q Consensus 89 ~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslf 168 (266)
++||+++++++||+++++|++|+|++++..+++++|.+|++.|++ .++||+++||||+||||||||
T Consensus 77 ~~Sn~~~~~~~ll~~~~i~~~~~~~~~~~~~~~~~~~~y~~~i~~--------------~~~~Dl~lLGmG~DGH~A~n~ 142 (232)
T PRK09762 77 PGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIAR--------------KGGLDLCVLGLGKNGHLGLNE 142 (232)
T ss_pred cHHHHHHHHHHhcCCCCCCHHHEECCCCCcccHHHHHHHHHHHHh--------------cCCCCEEEEccCCCCceecCC
Confidence 999999999999999999999999999876568899999999986 368999999999999999888
Q ss_pred CCCCcccc--------ccceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccccccc
Q 024509 169 PNHSVLDV--------KNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMA 240 (266)
Q Consensus 169 P~~~~~~~--------~~~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l 240 (266)
||+++... .+.++.....++++|++|||||++.|++||+|+|+++|++|++++++++++++ +.++||++|
T Consensus 143 P~~slfp~~~~~~l~~~~~~~~~~~~~~~~p~~riTlt~~~i~~A~~i~llv~G~~Ka~~l~~~l~~~~--~~~~Pas~l 220 (232)
T PRK09762 143 PGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKV--STAIPASFL 220 (232)
T ss_pred CCCCCCCCceeeeccHhhhhhhccCCCCCCCCccEEeCHHHHHhcCEEEEEEeCHHHHHHHHHHHcCCC--CCcccHHHH
Confidence 88764432 22333334456788999999999999999999999999999999999999876 678999999
Q ss_pred cccCCeEEEEecH
Q 024509 241 QPTNGKLVWFLDK 253 (266)
Q Consensus 241 ~~~~~~~~~~~D~ 253 (266)
+ .|+++++++|+
T Consensus 221 ~-~h~~~~~~~d~ 232 (232)
T PRK09762 221 W-LHSNFICLIDR 232 (232)
T ss_pred h-hCCCEEEEecC
Confidence 9 78999999995
No 9
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=100.00 E-value=4.5e-56 Score=389.58 Aligned_cols=222 Identities=19% Similarity=0.237 Sum_probs=192.5
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCC---C
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAK---N 87 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~---~ 87 (266)
|++++|+|++++++++|+.|.+. +.++++++|+||||+||..+|+.|.......++|++|+||++|| ||. +
T Consensus 1 m~i~i~~~~~e~~~~~a~~i~~~----i~~~~~~~l~lsgG~tp~~~y~~L~~~~~~~~~w~~v~~f~~DE--v~~~~~~ 74 (239)
T PRK12358 1 MKIIITKDYEEMSRVAAHHLLGY----MSKTKRVNLAITAGSTPKGMYEYLITLVKGKAWYDNVHYYNFDE--IPFRGKE 74 (239)
T ss_pred CeEEEECCHHHHHHHHHHHHHHH----HHhCCCeEEEECCCCCHHHHHHHHHHHHhcCCCHHHcEEEeccc--cCCCCcc
Confidence 68999999999999999999864 55688999999999999999987664333456799999999999 555 4
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceecc
Q 024509 88 HSDSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASL 167 (266)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAsl 167 (266)
+.+||++++|++||+++++|++|+|++++ ++|.+|+++|++ .|+||+++||||+|||||||
T Consensus 75 ~~~s~~~~~~~~l~~~~~i~~~~~~~~~~-----~~~~~y~~~i~~--------------~~~~Dl~lLG~G~DGH~As~ 135 (239)
T PRK12358 75 GEGVTITNLRNLFFTPAGIKEENIHKLTI-----DNYREHDQKLAR--------------DGGLDLVVLGLGADGHFCGN 135 (239)
T ss_pred ccccHHHHHHHHhcCcCCCCHHHeeCCCH-----HHHHHHHHHHHh--------------cCCCCEEEEccCCCCceeec
Confidence 55689999999999999999999999985 369999999986 47899999999999999999
Q ss_pred CCCCCccccccceEEee-------------cCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcc
Q 024509 168 FPNHSVLDVKNQWVSFI-------------TDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPS 234 (266)
Q Consensus 168 fP~~~~~~~~~~~v~~~-------------~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~ 234 (266)
|||++.+....+++... .+++++|++|||||++.|++||+|+|+++|++|++++++++.+++ +.+
T Consensus 136 fPg~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~P~~riTlt~~~i~~A~~i~ll~~G~~Ka~~l~~~l~~~~--~~~ 213 (239)
T PRK12358 136 LPGTTHFHDETVEVPIQGEMVDIVAHGELGGDFSLVPDSYVTMGPKSIMAAKNLLLIVNGKGKAQILKKVLQGPV--TED 213 (239)
T ss_pred CCCCCcCCCceEEEECcHHHHHHhhhhhccCCcccCCCeeEEcchHHHHhCCEEEEEEeCHHHHHHHHHHHcCCC--CCC
Confidence 99987655544433321 135788999999999999999999999999999999999999876 689
Q ss_pred cccccccccCCeEEEEecHHHHhccc
Q 024509 235 LPARMAQPTNGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 235 ~Pas~l~~~~~~~~~~~D~~Aa~~l~ 260 (266)
+|+|+++ .|++++|++|++|++.|.
T Consensus 214 ~Pas~l~-~h~~~~~~~D~~aa~~l~ 238 (239)
T PRK12358 214 VPASILQ-LHPNLTVILDEAAAAELA 238 (239)
T ss_pred cCcHHhc-cCCCEEEEECHHHHhhcc
Confidence 9999999 689999999999998774
No 10
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=100.00 E-value=1.9e-55 Score=430.35 Aligned_cols=239 Identities=24% Similarity=0.281 Sum_probs=214.8
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhc-ccCCCCCCCCcceEEecceee-c
Q 024509 7 HRDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADERV-V 84 (266)
Q Consensus 7 ~~~~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr~-v 84 (266)
+.++|++++|+|.+++++.+|+.|++.|++++++++.++|+||||+||..+|+.|. .++...++|++|+||++|||| |
T Consensus 24 ~~~~i~~~if~~~ee~a~~vA~~I~~~I~~~~~~~~~~~laLsGGsTP~~~Y~~L~~~~~~~~l~w~~V~~F~~DEr~~v 103 (652)
T PRK02122 24 RFEKIPTDIFESSEEASRAVAQEIATLIRERQAEGKPCVLGLATGSSPIGVYAELIRMHREEGLSFKNVITFNLDEYYPM 103 (652)
T ss_pred hccceEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcCHHHHHHHHHhhhhccCCCchheEEEeCeeccCC
Confidence 55889999999999999999999999999999999999999999999999997554 445678999999999999999 9
Q ss_pred CCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCC---CHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCC
Q 024509 85 AKNHSDSNYKLAKEGLLSKVPIVPSHVHSINDSL---SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSD 161 (266)
Q Consensus 85 p~~~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~~---d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~D 161 (266)
|++|++||+++|+++||+++++|++|+|.+++.. +++++|.+|++.|++ .++||++|||||+|
T Consensus 104 p~d~~~Sn~~~~re~L~~~i~Ip~~ni~~~dg~~~~~~~~~~~~~Ye~~I~~--------------~gg~DlvLLGiG~D 169 (652)
T PRK02122 104 QPDSLQSYHRFMKENLFDHVDIPPENIHIPDGTIPKEEIDEYCRDYEEKIEA--------------AGGIDFQLLGIGRT 169 (652)
T ss_pred CCCcHHHHHHHHHHHhhccCCCCHHHeecCCCccCcCCHHHHHHHHHHHHHh--------------hCCCcEEEeCCCCC
Confidence 9999999999999999999999999999998863 789999999999986 36899999999999
Q ss_pred CceeccCCCCCccccccceEE-----------eecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCC
Q 024509 162 GHVASLFPNHSVLDVKNQWVS-----------FITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGP 230 (266)
Q Consensus 162 GHiAslfP~~~~~~~~~~~v~-----------~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~ 230 (266)
|||||||||++..+ .++.+. .+...+.+|++|||||++.|++||+|+|+++|++|++++++++++++
T Consensus 170 GHiAsnfPgs~~~s-~tr~v~l~~~tr~~aa~~f~~~~~~P~~rITmgi~~I~~Ar~Iilla~G~~Ka~iv~~~l~g~~- 247 (652)
T PRK02122 170 GHIGFNEPGSGRNS-RTRLVTLDHITRRDAASDFFGEENVPRKAITMGVGTILKARRIVLLAWGEHKAPIIKRAVEGEI- 247 (652)
T ss_pred CceeccCCCCcccc-cceEEEccchhhhhhccccCCCCCCCCceEEeCHHHHHhhCeEEEEEeCHHHHHHHHHHHhCCC-
Confidence 99999999997633 233321 12235778999999999999999999999999999999999999876
Q ss_pred CCcccccccccccCCeEEEEecHHHHhcccccc
Q 024509 231 NCPSLPARMAQPTNGKLVWFLDKPAASKLQSVQ 263 (266)
Q Consensus 231 ~~~~~Pas~l~~~~~~~~~~~D~~Aa~~l~~~~ 263 (266)
+..+|||+|+ .|++++|++|++||++|+.++
T Consensus 248 -~~~~PAs~Lq-~h~~~~~~lD~~AA~~Ltr~~ 278 (652)
T PRK02122 248 -SDEVPASYLQ-EHPNATFVLDLAAASELTRIK 278 (652)
T ss_pred -CCccchHHhc-cCCCEEEEEcHHHhhhcccCC
Confidence 6899999999 689999999999999998643
No 11
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=100.00 E-value=1.1e-55 Score=377.27 Aligned_cols=197 Identities=45% Similarity=0.713 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHHHhc
Q 024509 22 LSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLL 101 (266)
Q Consensus 22 l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll 101 (266)
|++++|++|++.+++.+++++.++|+||||+||..+|+.+......+++|++|+||++|||+||++|++||+++++++||
T Consensus 1 la~~~a~~i~~~i~~~i~~~~~~~i~LsgGstp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~~l~ 80 (199)
T PF01182_consen 1 LAQAVAEAIAEAIEEAIAERGRAVIALSGGSTPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLREHLL 80 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSEEEEE--SCTHHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHHHTG
T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHHHhh
Confidence 57899999999999999999999999999999999998665422247999999999999999999999999999999999
Q ss_pred CCCCCCCCCeEeCCC-CCCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccCCCCCccc-cccc
Q 024509 102 SKVPIVPSHVHSIND-SLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLD-VKNQ 179 (266)
Q Consensus 102 ~~~~i~~~~v~~~~~-~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~~~-~~~~ 179 (266)
+++++|++|+|++++ ..|++++|++|++.|++.++.. ..|+||+++||||+||||||||||++.+. ++++
T Consensus 81 ~~~~i~~~~i~~~~~~~~~~~~~~~~y~~~l~~~~~~~--------~~p~~Dl~lLG~G~DGH~aslfPg~~~~~~~~~~ 152 (199)
T PF01182_consen 81 DPLPIPPENIHPIDGEADDPEEAAERYEQELASLGGEA--------GFPGFDLVLLGMGEDGHTASLFPGSPALLEESER 152 (199)
T ss_dssp GGSGGGGGGEETSSTTTSSHHHHHHHHHHHHHHHSSSE--------ECESBSEEEEE--TTS-BTTB-TTCHTTHHHHSS
T ss_pred ccCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHhcccc--------CCCceeEEEeccccCCCeeccCCCCccccccccc
Confidence 999999999999997 4599999999999999975422 13569999999999999999999998854 3345
Q ss_pred eEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHh
Q 024509 180 WVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAID 226 (266)
Q Consensus 180 ~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~ 226 (266)
++..+.++|++|++|||||++.|++||+|+|+++|++|+++++++|+
T Consensus 153 ~~~~~~~~~~~p~~riTlt~~~i~~a~~i~~l~~G~~Ka~~v~~~l~ 199 (199)
T PF01182_consen 153 WVVAVTDSPKPPPQRITLTLPTIMSARKIVLLATGEEKAEAVKRALQ 199 (199)
T ss_dssp SSEEEECCTTSSSEEEEE-HHHHHTSSEEEEEEESGGGHHHHHHHH-
T ss_pred eEEEecCCCCCCcceEEeCHHHHHhcCEEEEEEeCHHHHHHHHHHhC
Confidence 67777788999999999999999999999999999999999999975
No 12
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=100.00 E-value=2.1e-47 Score=338.56 Aligned_cols=231 Identities=27% Similarity=0.323 Sum_probs=202.7
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCc-EEEEEcCCChHHHHHHHhc-ccCCCCCCCCcceEEecceee-cCCC
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASVKERGV-FAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADERV-VAKN 87 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~-~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr~-vp~~ 87 (266)
|++++|+|.+++++++|++|.+.+++++++++. .+||||||+||..+|+.+. .++...++|++|+||++|||+ ||.+
T Consensus 1 m~~~~~~~~~~l~~~aa~~l~~~l~~~~~~~~~~~~iglsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~~~DEr~gv~~~ 80 (261)
T PRK00443 1 MRLIILKTAEEVGKWAARHIANRINAFLPTKERPFVLGLATGSSPLETYKALIELHKAGKVDFSRVTTFNLDEYVGLPAD 80 (261)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCCCHHHHHHHHHHHhhhcCCchHHeEEEeCceecCCCCC
Confidence 689999999999999999999999999998875 5688999999999997665 334467999999999999997 9999
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCeEeCCCC-CCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceec
Q 024509 88 HSDSNYKLAKEGLLSKVPIVPSHVHSINDS-LSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVAS 166 (266)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~-~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAs 166 (266)
|++||+.++++.|+++++++..++|++++. .++..++..|++.|++ .+++|+++||||+|||+||
T Consensus 81 ~~~s~~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~--------------~~~~Dl~llGiG~dgh~as 146 (261)
T PRK00443 81 HPESYRYFMRENFFDHVDIPPENINLLNGNAPDPEAECRRYEEKIKS--------------AGGIDLQILGIGENGHIAF 146 (261)
T ss_pred ChHHHHHHHHHHHhccCCCCHHHeecCCCCCcCHHHHHHHHHHHHHH--------------cCCCCEEEEccCCCCcccc
Confidence 999999999999999999999999999876 4888899999999986 3689999999999999999
Q ss_pred cCCCCCccccccceEEe------------e-cCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCc
Q 024509 167 LFPNHSVLDVKNQWVSF------------I-TDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCP 233 (266)
Q Consensus 167 lfP~~~~~~~~~~~v~~------------~-~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~ 233 (266)
|||++....+. .+.. + .+.+..|.+|||||++.|++|++++++++|++|+++++.+|.++. +.
T Consensus 147 lfp~~~~~~~~--~~~~l~~~~~~~~~~~~d~~g~~~~~~~itl~l~~L~~a~~vi~~a~G~~K~~ai~~al~~~~--~~ 222 (261)
T PRK00443 147 NEPGSSFASRT--RIKTLTEDTRIANSRFFDGDIEQVPKYALTVGVGTILDAKEIMLLAPGHNKAEAVKAAVEGPV--NH 222 (261)
T ss_pred cCCCCCCCCCe--EEEEccHhhHHHHHhhcCCCccCCCCeeEEcCHHHHHhcCeEEEEecChHHHHHHHHHHhCCC--CC
Confidence 99998643221 1111 1 113567889999999999999999999999999999999999876 67
Q ss_pred ccccccccccCCeEEEEecHHHHhccc
Q 024509 234 SLPARMAQPTNGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 234 ~~Pas~l~~~~~~~~~~~D~~Aa~~l~ 260 (266)
++|+++++ .|++++||+|++|++.|+
T Consensus 223 ~~Pa~~l~-~~~~~~~~~d~~aa~~l~ 248 (261)
T PRK00443 223 MWPASILQ-LHPKATLVLDEAAASELK 248 (261)
T ss_pred CcchHHHh-hCCCEEEEEcHHHHhHHH
Confidence 89999999 689999999999999884
No 13
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=100.00 E-value=5.9e-45 Score=317.14 Aligned_cols=217 Identities=27% Similarity=0.351 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhc-ccCCCCCCCCcceEEecceee-cCCCChhhHHHHHHH
Q 024509 21 ELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADERV-VAKNHSDSNYKLAKE 98 (266)
Q Consensus 21 ~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr~-vp~~~~~Sn~~~l~~ 98 (266)
++++.+|+++. +.+++++.++|+||||+||..+|+.+. ..+..+++|++|+||++|||+ ||.+|++||++++++
T Consensus 2 ~~~~~~a~~l~----~~i~~~~~~~i~lsgG~T~~~~~~~l~~~~~~~~~~~~~v~v~~~der~~v~~~~~~sn~~~~~~ 77 (232)
T cd01399 2 EMSEAAAELIA----ELIREKPPAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTFNLDEYVGLPPDHPQSYHYFMRE 77 (232)
T ss_pred hHHHHHHHHHH----HHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHhcCCcHHHeEEEeCceecCCCCCcchhHHHHHHH
Confidence 45666666665 567778999999999999999997664 334567999999999999999 999999999999999
Q ss_pred HhcCCCCCCCCCeEeCCCCC-CHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccCCCCCccccc
Q 024509 99 GLLSKVPIVPSHVHSINDSL-SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVK 177 (266)
Q Consensus 99 ~ll~~~~i~~~~v~~~~~~~-d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~~~~~ 177 (266)
.|+++++++..|+|+++++. ++.+++..|++.|++ .++||+++||||+|||+|||||++....+.
T Consensus 78 ~l~~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~l~~--------------~~~~Dl~llGiG~dgh~as~~p~~~~~~~~ 143 (232)
T cd01399 78 NLFDHIDIKPENIHIPDGNAADLEAECRRYEALIAE--------------AGGIDLQLLGIGENGHIGFNEPGSSLDSRT 143 (232)
T ss_pred HhhccCCCCHHHEecCCCCccCHHHHHHHHHHHHHH--------------cCCCCEEEECCCCCceeeecCCCCCCCCce
Confidence 99999999999999998754 788899999999986 368999999999999999999998765432
Q ss_pred cceEE-----------eecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccccccccccCCe
Q 024509 178 NQWVS-----------FITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGK 246 (266)
Q Consensus 178 ~~~v~-----------~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~~~~ 246 (266)
. ... .+...+..|.+|||||++.|+++++++++++|++|+++++.++.++. +.++|++.++ .|++
T Consensus 144 ~-~~~l~~~~~~~~~~~~~~~~~~~~~~itltl~~l~~a~~vi~~a~G~~K~~ai~~al~~~~--~~~~P~~~l~-~~~~ 219 (232)
T cd01399 144 R-VVTLDESTRQANARFFDGDEDVPTQAITMGIGTIMKAKEILLLATGEGKAEAVKKALEGPV--TEECPASILQ-LHPN 219 (232)
T ss_pred E-EEECCHHhHHHHhhhcCCcCCCCCceEecCHHHHhhCCEEEEEeCChHHHHHHHHHHhCCC--CCCcchHHHh-hCCC
Confidence 1 110 11122567889999999999999999999999999999999999876 6789999999 5889
Q ss_pred EEEEecHHHHhcc
Q 024509 247 LVWFLDKPAASKL 259 (266)
Q Consensus 247 ~~~~~D~~Aa~~l 259 (266)
++||+|++||+.|
T Consensus 220 ~~~~~d~~aa~~~ 232 (232)
T cd01399 220 VTVILDEAAASEL 232 (232)
T ss_pred eEEEEcHHHhccC
Confidence 9999999999764
No 14
>KOG3148 consensus Glucosamine-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-45 Score=301.67 Aligned_cols=231 Identities=23% Similarity=0.304 Sum_probs=209.3
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhc-CcEEEEEcCCChHHHHH-HHhcccCCCCCCCCcceEEecceee-cCCC
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASVKER-GVFAIALSGGSLIGLMG-KLCEAPYNKTVDWAKWYIFWADERV-VAKN 87 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~-~~~~l~lsGGstp~~l~-~ll~~~~~~~i~w~~v~~f~~DEr~-vp~~ 87 (266)
|+++|.++++.+++.+|+++...|++..... .-|+++|++||||..+| +|++.++.+.++|+.|..|++|||+ +|.+
T Consensus 1 mkliile~~d~~~ewaakyv~~ri~~f~p~~dkyf~lglptgstplg~ykklie~~k~g~~sf~yvktfnmdeyvglprd 80 (273)
T KOG3148|consen 1 MKLIILENYDKVSEWAAKYVVNRINQFTPGGDKYFVLGLPTGSTPLGMYKKLIEFYKNGVLSFKYVKTFNMDEYVGLPRD 80 (273)
T ss_pred CcEEEeechhHHHHHHHHHHHHHHhhcCCCCceEEEEecCCCCCchhHHHHHHHHHhcCceEEEEEeeecchhhcCCCCC
Confidence 6899999999999999999999888776544 56799999999999999 5888888889999999999999999 8999
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCeEeCCCCC-CHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceec
Q 024509 88 HSDSNYKLAKEGLLSKVPIVPSHVHSINDSL-SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVAS 166 (266)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~~-d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAs 166 (266)
|++|+..+|..+||++++|.++|+|.++|.+ |.+++|.+|+++|++ .|++||.+.|||+||||||
T Consensus 81 h~esyhsfmwnnffkhidi~p~n~hildgna~dl~aec~~fe~kike--------------aggidlfvggigpdghiaf 146 (273)
T KOG3148|consen 81 HPESYHSFMWNNFFKHIDINPANIHILDGNAADLQAECDAFERKIKE--------------AGGIDLFVGGIGPDGHIAF 146 (273)
T ss_pred ChhHHHHHHHHhhhhhcccCcccceeecCchHHHHHHHHHHHHHHHh--------------cCCeEEEeeccCCCCceee
Confidence 9999999999999999999999999999986 999999999999997 4789999999999999999
Q ss_pred cCCCCCcccccc-------------ceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCc
Q 024509 167 LFPNHSVLDVKN-------------QWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCP 233 (266)
Q Consensus 167 lfP~~~~~~~~~-------------~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~ 233 (266)
|+||+++.+.+. +++ -.+-.++|.+++|+|.+++|.||.+.++++|+.|+-+|-++++.+. +.
T Consensus 147 nepgsslvsrtrvktla~dti~anarff--dgd~tkvpt~altvgvgtvmdarevmilitgahkafalykaieegv--nh 222 (273)
T KOG3148|consen 147 NEPGSSLVSRTRVKTLAMDTILANARFF--DGDLTKVPTQALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGV--NH 222 (273)
T ss_pred CCCcchhhhhhhHHHHhHHHHHhhceec--CCccccCccceeEeeeeeeeecceEEEEEeccHHHHHHHHHHHhcc--cc
Confidence 999998775421 111 1345689999999999999999999999999999999999999887 78
Q ss_pred ccccccccccCCeEEEEecHHHHhccc
Q 024509 234 SLPARMAQPTNGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 234 ~~Pas~l~~~~~~~~~~~D~~Aa~~l~ 260 (266)
.+-+|..| +|++.++++|++|--+|.
T Consensus 223 mwtvsafq-qh~~t~ficdedatlelk 248 (273)
T KOG3148|consen 223 MWTVSAFQ-QHPRTTFICDEDATLELK 248 (273)
T ss_pred eeehhhHh-hCCceEEEecCCceeEEE
Confidence 99999999 899999999999988764
No 15
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=100.00 E-value=3.1e-40 Score=275.08 Aligned_cols=168 Identities=24% Similarity=0.266 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHHHhcCC
Q 024509 24 TNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSK 103 (266)
Q Consensus 24 ~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll~~ 103 (266)
+.+|++|++.+++.+++++.++|+||||+||..+|+.+....... +|++|+||++||||||.+|++||+++++++||++
T Consensus 2 ~~~a~~i~~~i~~~~~~~~~~~i~lsgGsTp~~~y~~L~~~~~~~-~w~~v~~f~~DEr~v~~~~~~Sn~~~~~~~ll~~ 80 (169)
T cd00458 2 KEALKFIEDKXEKLLEEKDDMVIGLGTGSTPAYFYKLLGEKLKRG-EISDIVGFPTDERYVPLDSDQSNFRQAKLLAFEH 80 (169)
T ss_pred hHHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHhhhhhC-CccceEEEECccccCCCCCchHHHHHHHHHhhcc
Confidence 568888999999999999999999999999999998765432223 8999999999999999999999999999999999
Q ss_pred CCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccCCCCCccccccceEEe
Q 024509 104 VPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDVKNQWVSF 183 (266)
Q Consensus 104 ~~i~~~~v~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~~~~~~~~v~~ 183 (266)
+++|++|+|+++++.++++++.+|.+.+.+. .|+||+++||||
T Consensus 81 ~~i~~~~v~~~~~~~~~~~~a~~y~~~~~~~-------------~~~~Dl~lLG~G------------------------ 123 (169)
T cd00458 81 DIIPASNVHYVDTSLPIEKACEKYEREILDQ-------------VDAIDLAVDGAG------------------------ 123 (169)
T ss_pred CCCCHHHeecCCCCCCcHHHHHHHHHHHHhh-------------CCCCCEEEECcC------------------------
Confidence 9999999999998877777777887766542 478999999999
Q ss_pred ecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccccccccccCCeEEEEe
Q 024509 184 ITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFL 251 (266)
Q Consensus 184 ~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~~~~~~~~~ 251 (266)
++|++++|+++|++|+++|++++++++ +.++|++.++ .|++++||+
T Consensus 124 -------------------~~a~~i~~~~~G~~Ka~~l~~~~~~~~--~~~~Pas~l~-~~~~~~~~~ 169 (169)
T cd00458 124 -------------------YRAGTVIVLVDGRKKVDYLCQNTEPGV--IENGIFADIR-GKEKDIVIV 169 (169)
T ss_pred -------------------ccccEEEEEecChhHHHHHHHHhcCCC--CCcCCHHHhc-cCCCeEEeC
Confidence 789999999999999999999998766 6799999999 579999985
No 16
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=98.09 E-value=0.00019 Score=65.57 Aligned_cols=201 Identities=19% Similarity=0.148 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHHH
Q 024509 20 EELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEG 99 (266)
Q Consensus 20 ~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ 99 (266)
+...+.++..-+..+.+.++... +||+++|.|...+-+.+.. .+-++++|+.+===.-+ .+..-+...+-..
T Consensus 94 ~~~~~~lg~aaA~~l~~~l~~gd--vigV~wGrTv~a~~~~l~~-----~~~~~~~vV~l~GG~~~-~~~~~~~~~~~~~ 165 (321)
T COG2390 94 DSILRRLGRAAAQYLESLLKPGD--VIGVGWGRTLSAVVDNLPP-----APLRDVKVVQLTGGVGH-ADGSYNANTIALR 165 (321)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCC--EEEEeccHHHHHHHHhcCc-----CccCCeEEEECCCCCCC-CccccCHHHHHHH
Confidence 33334344444444555665544 9999999997777665543 23455666654221111 1122222333333
Q ss_pred hcCCCCCCCCCeEeCCCCCCHHHHHHHH-HHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccCCCCCccc---
Q 024509 100 LLSKVPIVPSHVHSINDSLSAEEAADEY-EFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLD--- 175 (266)
Q Consensus 100 ll~~~~i~~~~v~~~~~~~d~~~~a~~y-~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~~~--- 175 (266)
+-++++.....++.|.--.+++....-- +..+++.+.. ....|+++.|+|. ..|.++...
T Consensus 166 ~A~k~~~~~~~l~aP~~~~s~e~r~~l~~e~~v~~vl~~----------~~~ad~alvGIG~------~~~~~~~~~~g~ 229 (321)
T COG2390 166 LAEKLGAESYLLPAPLVASSPELREALLQEPSVREVLDL----------ARSADLALVGIGS------LSANSTLVRSGF 229 (321)
T ss_pred HHHHhCCcEEeeecCccCCCHHHHHHHHhCcHHHHHHHH----------HHhCCEEEEecCC------CcccchhhhhcC
Confidence 3344443333444443333443322111 3344444322 1368999999994 333332110
Q ss_pred ---c-------c-------cceEEeecCCC--CCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccc
Q 024509 176 ---V-------K-------NQWVSFITDSP--KPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLP 236 (266)
Q Consensus 176 ---~-------~-------~~~v~~~~~~~--~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~P 236 (266)
+ . .+++..-.+.- ....+-|++++..|.++.+++.++.|.+|++++..+|.++-
T Consensus 230 ~~~~~~~~l~~~gaVGdi~g~ffD~~G~~~~~~ln~r~igl~L~~l~~ip~vI~vAgG~~K~~AI~aaL~gg~------- 302 (321)
T COG2390 230 IYEEELEALLAKGAVGDILGRFFDANGQPVDTPLNDRVIGLSLDDLRQIPKVIAVAGGESKAEAILAALRGGY------- 302 (321)
T ss_pred CCHHHHHHHHhCCcceecccceecCCCCCccccccCceecCCHHHHhcCCcEEEEeCCcccHHHHHHHHhCCC-------
Confidence 0 0 01111111111 12346899999999999999999999999999999999753
Q ss_pred cccccccCCeEEEEecHHHHhccc
Q 024509 237 ARMAQPTNGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 237 as~l~~~~~~~~~~~D~~Aa~~l~ 260 (266)
.| +.++|+.+|..|-
T Consensus 303 --------~n-~LITDe~tA~~lL 317 (321)
T COG2390 303 --------IN-VLITDEATAEALL 317 (321)
T ss_pred --------CC-EEEeCHHHHHHHH
Confidence 23 3568999888653
No 17
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=97.79 E-value=6.4e-05 Score=66.66 Aligned_cols=201 Identities=19% Similarity=0.129 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCC---CChhhHHHHHH
Q 024509 21 ELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAK---NHSDSNYKLAK 97 (266)
Q Consensus 21 ~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~---~~~~Sn~~~l~ 97 (266)
+..+.+++..++.+.+.+... -+|+++.|+|...+-+.+.. ....+++|+.+===. +. .++......+-
T Consensus 33 ~~~~~l~~~aA~~L~~~l~~~--~~iGv~wG~Tl~~~~~~l~~-----~~~~~~~vV~l~Gg~-~~~~~~~~~~i~~~lA 104 (255)
T PF04198_consen 33 DILESLGEAAAEYLSELLKDG--DVIGVGWGRTLYAVANHLPP-----KSLPNVTVVPLIGGV-GNSNSYQANEIARRLA 104 (255)
T ss_dssp HHHHHHHHHHHHHHHHH--TT--EEEEE-TSHHHHHHHHTS-------SSSSCEEEEESBSBT-TTSSGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCC--CEEEEcchHHHHHHHHhcCc-----cCCCCcEEEECCCCC-CCCCCcCHHHHHHHHH
Confidence 344444444444444555433 39999999996555443322 456678877653221 11 23444444444
Q ss_pred HHhcCCCCCCCCCeEeCCCCCCHHH-HHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccCCCCCcccc
Q 024509 98 EGLLSKVPIVPSHVHSINDSLSAEE-AADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVLDV 176 (266)
Q Consensus 98 ~~ll~~~~i~~~~v~~~~~~~d~~~-~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~~~~ 176 (266)
+.| +.....++.|---.+++. ..-.-+..+++.+.. ....|++++|+|.=..-+.++...-...+
T Consensus 105 ~~~----g~~~~~l~aP~~~~s~~~~~~l~~~~~i~~~l~~----------~~~~dial~giG~~~~~~~~~~~~~~~~~ 170 (255)
T PF04198_consen 105 EKL----GGKYYFLPAPAFVDSPELRDALLAEPSIREVLDL----------ARKADIALVGIGSPSSDSTLYRSGYLSEE 170 (255)
T ss_dssp HHH----TSEEE---SBSB-SSHHHHHHHHTSHHHHHHHHH----------HCT-SEEEEEEEEHHHHHHHCHHTTSCHH
T ss_pred HHh----CCcEEEEeCCccCCCHHHHHHHHhChHHHHHHHH----------HHhCCEEEEecCCCCCcchHHHhCCCCHH
Confidence 433 332223333322224433 111222244443321 25799999999976664444422110000
Q ss_pred ------ccceEEe----ecCC------CCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccccccc
Q 024509 177 ------KNQWVSF----ITDS------PKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMA 240 (266)
Q Consensus 177 ------~~~~v~~----~~~~------~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l 240 (266)
....|-. +.+. .....+.|++++..|.+.++++.++.|.+|.+++..+|.++.
T Consensus 171 ~~~~l~~~gAVGdi~~~f~d~~G~~v~~~~~~r~igi~l~~L~~i~~~I~va~G~~K~~aI~aALr~g~----------- 239 (255)
T PF04198_consen 171 EIEELREKGAVGDICGRFFDADGNIVDTPLNDRTIGISLEDLRKIPRVIAVAGGEEKAEAILAALRGGY----------- 239 (255)
T ss_dssp HHHHHHHTTEEEEETTEEEETTS-EEEHGGGGGBSB--HHHHHTSSEEEEEE-SGGGHHHHHHHHHTTS-----------
T ss_pred HHHHHHHCCcEEEhhchhhcCCCCCccCcCcCceeecCHHHHhCCCcEEEEcCchhhHHHHHHHHhcCC-----------
Confidence 0000100 0011 012356899999999999999999999999999999999864
Q ss_pred cccCCeEEEEecHHHHhcc
Q 024509 241 QPTNGKLVWFLDKPAASKL 259 (266)
Q Consensus 241 ~~~~~~~~~~~D~~Aa~~l 259 (266)
-+ +.++|++.|..|
T Consensus 240 ----i~-~LItDe~tA~~l 253 (255)
T PF04198_consen 240 ----IN-VLITDESTARAL 253 (255)
T ss_dssp ----TS-EEEEEHHHHHHH
T ss_pred ----CC-EEEECHHHHHHH
Confidence 13 356899988765
No 18
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=97.31 E-value=0.017 Score=52.84 Aligned_cols=53 Identities=26% Similarity=0.252 Sum_probs=44.6
Q ss_pred CCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccccccccccCCeEEEEecHHHHhccc
Q 024509 192 PERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 192 ~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~~~~~~~~~D~~Aa~~l~ 260 (266)
.+.|++++..|.+.++++.++.|.+|++++..+|.++- -|+ .++|+..|..|-
T Consensus 262 ~r~igi~le~Lk~ip~~I~vA~G~~K~~Ai~aALrgg~---------------i~~-LITDe~tA~~lL 314 (318)
T PRK15418 262 NELIGLPLSSLKTIPTVIGVAGGEEKAEAIIAALKGGY---------------INA-LVTDEKTARAIL 314 (318)
T ss_pred cceecCCHHHHcCCCCEEEEecCHHHHHHHHHHHhcCC---------------CCE-EEECHHHHHHHH
Confidence 34788999999999999999999999999999999853 133 468999988763
No 19
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=80.03 E-value=27 Score=30.97 Aligned_cols=53 Identities=13% Similarity=0.024 Sum_probs=32.8
Q ss_pred HHHHHHHHHhc----CcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCC
Q 024509 31 ADLSEASVKER----GVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKN 87 (266)
Q Consensus 31 ~~~i~~~i~~~----~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~ 87 (266)
...+.+.+.+. .++.||||||..=..+..++..... . -++..+.+|+.+-+..
T Consensus 7 ~~~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~-~---~~~~a~~Vd~~~~~~~ 63 (298)
T COG0037 7 ERKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGR-R---IEVEAVHVDHGLRGYS 63 (298)
T ss_pred HHHHHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhcc-C---ceEEEEEecCCCCCcc
Confidence 33344455444 6889999999764455444443211 1 4677899999886543
No 20
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=77.50 E-value=12 Score=33.72 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHHHh---cCCC
Q 024509 28 DYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGL---LSKV 104 (266)
Q Consensus 28 ~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~l---l~~~ 104 (266)
+...+.+++.+. .+++.+|||||-......-|+... -=++++..++|-..+..+..+.-..+++++| +-.+
T Consensus 9 e~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~A-----iGd~l~cvfVD~GLlR~~E~e~V~~~f~~~~~~nl~~V 82 (315)
T COG0519 9 EEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRA-----IGDQLTCVFVDHGLLRKGEAEQVVEMFREHLGLNLIVV 82 (315)
T ss_pred HHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHH-----hhcceEEEEecCCcccCCcHHHHHHHHHhhcCCceEEE
Confidence 344445556665 689999999995544444444321 1267889999999988888877777776655 1111
Q ss_pred CCCCCCeEeCCCCCCHHHHHHHHHHHHHHhh
Q 024509 105 PIVPSHVHSINDSLSAEEAADEYEFDIRQLV 135 (266)
Q Consensus 105 ~i~~~~v~~~~~~~d~~~~a~~y~~~i~~~~ 135 (266)
+.....+-.+.|-.||++--+...+..-+.|
T Consensus 83 dA~~~Fl~~L~GvtDPE~KRKiIG~~FI~VF 113 (315)
T COG0519 83 DAKDRFLSALKGVTDPEEKRKIIGREFIEVF 113 (315)
T ss_pred chHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 1111122224455588775554444443333
No 21
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=67.08 E-value=14 Score=30.55 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=30.8
Q ss_pred cEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHHHhcCCCCCC
Q 024509 43 VFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKVPIV 107 (266)
Q Consensus 43 ~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll~~~~i~ 107 (266)
+..||+|||..=..+..++.... ....| ++..+.+|..+- ........++++ +.+.+++|
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~-~~~~~-~~~~~~vdh~~~--~~s~~~~~~v~~-~~~~~~i~ 60 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELR-RRNGI-KLIAVHVDHGLR--EESDEEAEFVEE-ICEQLGIP 60 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHH-TTTTT-EEEEEEEE-STS--CCHHHHHHHHHH-HHHHTT-E
T ss_pred CEEEEEcCCHHHHHHHHHHHHHH-HhcCC-CeEEEEEecCCC--cccchhHHHHHH-HHHhcCCc
Confidence 35799999966445544443211 12344 889999998763 233333455544 34455554
No 22
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=65.11 E-value=20 Score=29.95 Aligned_cols=45 Identities=13% Similarity=0.100 Sum_probs=29.9
Q ss_pred HHhcCcEEEEEcCC-ChHHHHHHHhcccCCCCCCCCcceEEecceee
Q 024509 38 VKERGVFAIALSGG-SLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 38 i~~~~~~~l~lsGG-stp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (266)
+.+...+.|+|+|| -|...+++.+.... -.+..+.+-+++.+.+|
T Consensus 93 m~~~sda~I~lPGG~GTL~El~e~~~~~q-lg~~~kPiil~n~~g~~ 138 (178)
T TIGR00730 93 MAELADAFIAMPGGFGTLEELFEVLTWAQ-LGIHQKPIILFNVNGHF 138 (178)
T ss_pred HHHhCCEEEEcCCCcchHHHHHHHHHHHH-cCCCCCCEEEECCcchH
Confidence 34668999999999 45555555443211 12455778899989888
No 23
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=62.06 E-value=6.7 Score=31.01 Aligned_cols=44 Identities=16% Similarity=-0.012 Sum_probs=25.8
Q ss_pred hcCcEEEEEcCC-ChHHHHHHHhcccCCCCCCCCcceEEecceee
Q 024509 40 ERGVFAIALSGG-SLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 40 ~~~~~~l~lsGG-stp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (266)
+...+.|+++|| -|...+++.+...+-+..+-..+.+++.|++|
T Consensus 52 ~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w 96 (133)
T PF03641_consen 52 ESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFW 96 (133)
T ss_dssp HHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCC
T ss_pred HhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchH
Confidence 446889999999 45555665444211122222257778888888
No 24
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=57.40 E-value=1.1e+02 Score=25.38 Aligned_cols=120 Identities=12% Similarity=0.041 Sum_probs=73.7
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhccc---CCCCCCCCcceEEecceeecCCC-
Q 024509 12 ELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAP---YNKTVDWAKWYIFWADERVVAKN- 87 (266)
Q Consensus 12 ~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~---~~~~i~w~~v~~f~~DEr~vp~~- 87 (266)
-..+|++.+++.+.++.+|.+ .++.+.++.++.+...+...+-+.|... ....++=.++.+....|.+.+.+
T Consensus 22 ~c~~Y~~~~e~~~~~~~Fi~~----GL~~ge~~l~v~~~~~~~~~l~~~L~~~~~d~~~~~~~gqL~~~~~~~~Y~~~g~ 97 (191)
T PF14417_consen 22 ICAFYDDEEELLEVLVPFIRE----GLARGERCLYVAPDPRRVEELRDELRKAGPDVEQYLDSGQLELLDAEEWYLPDGR 97 (191)
T ss_pred EEEEECCHHHHHHHHHHHHHH----HHHCCCeEEEEECCCCCHHHHHHHHHhcCCchhhcccCCCEEEecchhhhccCCC
Confidence 346899999999999999875 6767666666665455555555544321 01224446788888888776554
Q ss_pred -ChhhHHHHHHHHhcCCCCCCCCCeEeCCCC-----CCHHHHHHHHHHHHHHhhh
Q 024509 88 -HSDSNYKLAKEGLLSKVPIVPSHVHSINDS-----LSAEEAADEYEFDIRQLVK 136 (266)
Q Consensus 88 -~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~-----~d~~~~a~~y~~~i~~~~~ 136 (266)
|++....++++.+...+.-.-..+.. .++ .+.-+...+||..+..++.
T Consensus 98 f~~~~~i~~~~~~~~~a~~~G~~~lRv-~ge~~w~~~~~~~~l~~yE~~ln~~~~ 151 (191)
T PF14417_consen 98 FDPARMIAFWRAALEQALAEGYRGLRV-IGEMTWALRSGWEELLRYEALLNRLFA 151 (191)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCcEEE-EEechhhccccHHHHHHHHHHHHHHhc
Confidence 56667777777654444211111111 111 0234578899999998764
No 25
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=51.78 E-value=47 Score=29.32 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=53.6
Q ss_pred HHHhcCcEEEEEcCCChH-H-HHHHHhcccCCCCCCCCcceEEecceeec-C-----CCC-----------hhhHHHHHH
Q 024509 37 SVKERGVFAIALSGGSLI-G-LMGKLCEAPYNKTVDWAKWYIFWADERVV-A-----KNH-----------SDSNYKLAK 97 (266)
Q Consensus 37 ~i~~~~~~~l~lsGGstp-~-~l~~ll~~~~~~~i~w~~v~~f~~DEr~v-p-----~~~-----------~~Sn~~~l~ 97 (266)
.+++++..++||+..... . ..++.|.. ..|++++.- |.-|.++. + ..+ .+-+-+-+-
T Consensus 92 ~lq~~~~~v~alT~~~~~~~~~t~~~Lk~---~gi~fs~~~-~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L 167 (252)
T PF11019_consen 92 SLQNKGIPVIALTARGPNMEDWTLRELKS---LGIDFSSSS-FPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVL 167 (252)
T ss_pred HHHHCCCcEEEEcCCChhhHHHHHHHHHH---CCCCccccc-cccCcceecccccCCCCCCceeecCeEEeCCCccHHHH
Confidence 477889999999877532 1 11233333 478887765 33343331 1 011 122235566
Q ss_pred HHhcCCCCCCCCCeEeCCCCCCHHHHHHHHHHHHH
Q 024509 98 EGLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIR 132 (266)
Q Consensus 98 ~~ll~~~~i~~~~v~~~~~~~d~~~~a~~y~~~i~ 132 (266)
..||+.++-.+++|.+++.. .+.....++.+.
T Consensus 168 ~~fL~~~~~~pk~IIfIDD~---~~nl~sv~~a~k 199 (252)
T PF11019_consen 168 KYFLDKINQSPKKIIFIDDN---KENLKSVEKACK 199 (252)
T ss_pred HHHHHHcCCCCCeEEEEeCC---HHHHHHHHHHHh
Confidence 78999999999999999865 344555555554
No 26
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=50.30 E-value=30 Score=34.24 Aligned_cols=82 Identities=23% Similarity=0.282 Sum_probs=54.6
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcC-cEEEEEcCCC------------------hHHHHHHHhcccCCCCCCC
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASVKERG-VFAIALSGGS------------------LIGLMGKLCEAPYNKTVDW 71 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~-~~~l~lsGGs------------------tp~~l~~ll~~~~~~~i~w 71 (266)
+-+++.+|. ||+-.+.++|.. +++.. --+.++.||- ||..|.+++..-+..-=.|
T Consensus 265 ~~LV~tPTR-ELa~QV~~Hl~a-----i~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 265 IALVVTPTR-ELAHQVKQHLKA-----IAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred eeEEecChH-HHHHHHHHHHHH-----hccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhh
Confidence 456777775 677777788753 33333 3355667773 3445556555422222379
Q ss_pred CcceEEecce--eecCCCChhhHHHHHHH
Q 024509 72 AKWYIFWADE--RVVAKNHSDSNYKLAKE 98 (266)
Q Consensus 72 ~~v~~f~~DE--r~vp~~~~~Sn~~~l~~ 98 (266)
+++.+.-+|| |.|..+|=+-..+.++.
T Consensus 339 k~vkcLVlDEaDRmvekghF~Els~lL~~ 367 (731)
T KOG0347|consen 339 KKVKCLVLDEADRMVEKGHFEELSKLLKH 367 (731)
T ss_pred hhceEEEEccHHHHhhhccHHHHHHHHHH
Confidence 9999999999 78999998887777754
No 27
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=47.48 E-value=47 Score=30.33 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCC
Q 024509 29 YIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAK 86 (266)
Q Consensus 29 ~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~ 86 (266)
...+.|++.+.. +++.+|+|||-.=..+..++... +. .+++.+.+|.-..+.
T Consensus 5 ~~~~~l~~~v~~-~kVvValSGGVDSsvla~ll~~~----~G-~~v~av~vd~G~~~~ 56 (311)
T TIGR00884 5 EAVEEIREQVGD-AKVIIALSGGVDSSVAAVLAHRA----IG-DRLTCVFVDHGLLRK 56 (311)
T ss_pred HHHHHHHHHhCC-CcEEEEecCChHHHHHHHHHHHH----hC-CCEEEEEEeCCCCCh
Confidence 344555666654 88999999994433444444321 22 378888999766553
No 28
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=43.47 E-value=51 Score=28.67 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=32.3
Q ss_pred HHHHHHHHh-cCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceee
Q 024509 32 DLSEASVKE-RGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 32 ~~i~~~i~~-~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (266)
+.|++++++ .+++.+++|||..=..+..++... ..++.++++|+-+
T Consensus 30 e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~------~~~i~vvfiDTG~ 76 (241)
T PRK02090 30 ERLAWALENFGGRLALVSSFGAEDAVLLHLVAQV------DPDIPVIFLDTGY 76 (241)
T ss_pred HHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhc------CCCCcEEEecCCC
Confidence 344566665 345889999997766777777652 2468899999865
No 29
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=41.86 E-value=89 Score=26.70 Aligned_cols=47 Identities=11% Similarity=-0.050 Sum_probs=26.1
Q ss_pred HHHhcCcEEEEEcCC-ChHHHHHHHhcccCCCCCCCCcce-EEecceee
Q 024509 37 SVKERGVFAIALSGG-SLIGLMGKLCEAPYNKTVDWAKWY-IFWADERV 83 (266)
Q Consensus 37 ~i~~~~~~~l~lsGG-stp~~l~~ll~~~~~~~i~w~~v~-~f~~DEr~ 83 (266)
.+.+...+.++++|| -|...++..+...+.....-.++- +++.+.+|
T Consensus 106 ~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~ 154 (205)
T COG1611 106 AMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFW 154 (205)
T ss_pred HHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHH
Confidence 445668899999999 455555554433221233334444 44455554
No 30
>TIGR03728 glyco_access_1 glycosyltransferase, SP_1767 family. Members of this protein family are putative glycosyltransferases. Some members are found close to genes for the accessory secretory (SecA2) system, and are suggested by Partial Phylogenetic Profiling to correlate with SecA2 systems. Glycosylation, therefore, may occur in the cytosol prior to secretion.
Probab=41.03 E-value=2.6e+02 Score=25.01 Aligned_cols=104 Identities=21% Similarity=0.174 Sum_probs=61.9
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHH-HHHhcccCCCCCCCCcceEEecceeecCCC
Q 024509 9 DRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLM-GKLCEAPYNKTVDWAKWYIFWADERVVAKN 87 (266)
Q Consensus 9 ~~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l-~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~ 87 (266)
..++.+++++..+.... +.|.+.++ +..+.-.|-++-|+|.+.| |+|... .=+.++.+
T Consensus 157 ksI~rIicPsknAy~~y--d~I~e~i~---~~~k~~LiLlaLGPTAkVLayDL~~~----------------GyQaiDIG 215 (265)
T TIGR03728 157 KSIKRIICPSKNAFSKY--DEILEAIR---ENAKNKLILLMLGPTAKVLAYDLSDL----------------GYQALDIG 215 (265)
T ss_pred ccEEEEeCCChhHHHHH--HHHHHHHH---HhCCCeEEEEecCCchhhhHHHHHhc----------------cCcEEecc
Confidence 45788999998877665 44444333 2233445667889998777 677543 11346677
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCCHHH-HHHHHHHHHHH
Q 024509 88 HSDSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEE-AADEYEFDIRQ 133 (266)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~~d~~~-~a~~y~~~i~~ 133 (266)
|-+|=|-.++-.=-.++.+.-.++--.+...+... .-+.|+++|-.
T Consensus 216 HiDsEYEW~~m~A~~Kvkl~~K~~~E~~~~~~i~~~~d~~Y~~qIi~ 262 (265)
T TIGR03728 216 HIDSEYEWFLMGAKYKVKLKNKHTAEVNFDENINEIDDNQYESQIIA 262 (265)
T ss_pred cchHHHHHHHhcCceeeecCccceeeccCcccchhccchhHHHHHHH
Confidence 88888766665554555555444444443322222 24678877753
No 31
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=40.55 E-value=1.6e+02 Score=25.70 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=24.7
Q ss_pred HhcCcEEEEEcCCChHHHHHHHhcccC-CCCCCCCcceEEecceee
Q 024509 39 KERGVFAIALSGGSLIGLMGKLCEAPY-NKTVDWAKWYIFWADERV 83 (266)
Q Consensus 39 ~~~~~~~l~lsGGstp~~l~~ll~~~~-~~~i~w~~v~~f~~DEr~ 83 (266)
....+..+|+|||..=..+..++.... ...+++ ++..+.+|...
T Consensus 27 ~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~-~l~av~vd~g~ 71 (258)
T PRK10696 27 EEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINF-ELVAVNLDQKQ 71 (258)
T ss_pred CCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCe-EEEEEEecCCC
Confidence 345688999999965444444443211 112222 56777788643
No 32
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=39.95 E-value=1e+02 Score=26.85 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEeccee
Q 024509 18 SVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADER 82 (266)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr 82 (266)
+.+++.+.+...|.+.+++. ....+.|+||||-.=..+..++... ..=.+++.+.++..
T Consensus 2 ~~~~~~~~l~~~l~~~~~~~--~~~~vvv~lSGGiDSs~~a~la~~~----~~~~~v~~~~~~~~ 60 (248)
T cd00553 2 DLEEIINALVLFLRDYLRKS--GFKGVVLGLSGGIDSALVAALAVRA----LGRENVLALFMPSR 60 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHh--CCCCEEEeCCCcHHHHHHHHHHHHH----hCcccEEEEECCCC
Confidence 34555555555555544332 2357899999994333333443321 11135677777654
No 33
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=39.85 E-value=18 Score=29.85 Aligned_cols=21 Identities=38% Similarity=0.798 Sum_probs=17.2
Q ss_pred CceeEEEeccCCCCceeccCC
Q 024509 149 PKFDLILLGMGSDGHVASLFP 169 (266)
Q Consensus 149 ~~~Dl~lLG~G~DGHiAslfP 169 (266)
|.+|++++|+|.+-|.--+-|
T Consensus 110 PkidlLIvG~Gd~~~p~~v~~ 130 (196)
T KOG3363|consen 110 PKIDLLIVGCGDKKHPDKVRP 130 (196)
T ss_pred CCccEEEEecCCcCCchhcCH
Confidence 789999999999998754433
No 34
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=37.10 E-value=1.4e+02 Score=29.49 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=56.5
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcE-EEEEcCCChH-HHHHHHhc--------------ccCCCCCC
Q 024509 7 HRDRGELRIHESVEELSTNLADYIADLSEASVKERGVF-AIALSGGSLI-GLMGKLCE--------------APYNKTVD 70 (266)
Q Consensus 7 ~~~~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~-~l~lsGGstp-~~l~~ll~--------------~~~~~~i~ 70 (266)
++.++.+.|..--.||+..+.+...+ +...... +.|+.||.+- ..+.++-. ....+.++
T Consensus 162 ~~~~P~vLVL~PTRELA~QV~~~~~~-----~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~ 236 (519)
T KOG0331|consen 162 RGDGPIVLVLAPTRELAVQVQAEARE-----FGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLN 236 (519)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHH-----HcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCcc
Confidence 34456555554445677776666543 2233333 7889999652 22222211 12346899
Q ss_pred CCcceEEecce--eecCCCChhhHHHHHHHHhcCCCCCCCCCeEeC
Q 024509 71 WAKWYIFWADE--RVVAKNHSDSNYKLAKEGLLSKVPIVPSHVHSI 114 (266)
Q Consensus 71 w~~v~~f~~DE--r~vp~~~~~Sn~~~l~~~ll~~~~i~~~~v~~~ 114 (266)
.+++.+.-+|| |.+..+ +...+++ ++.+++-+..|...+
T Consensus 237 l~~v~ylVLDEADrMldmG----Fe~qI~~-Il~~i~~~~rQtlm~ 277 (519)
T KOG0331|consen 237 LSRVTYLVLDEADRMLDMG----FEPQIRK-ILSQIPRPDRQTLMF 277 (519)
T ss_pred ccceeEEEeccHHhhhccc----cHHHHHH-HHHhcCCCcccEEEE
Confidence 99999999999 555444 5555544 556665444444444
No 35
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=36.89 E-value=1.3e+02 Score=26.16 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh-cCcEEEEEcCCChHHHHHH
Q 024509 21 ELSTNLADYIADLSEASVKE-RGVFAIALSGGSLIGLMGK 59 (266)
Q Consensus 21 ~l~~~~a~~i~~~i~~~i~~-~~~~~l~lsGGstp~~l~~ 59 (266)
+=+..+++.|.+.+.+.-+. +...++.++||.--..+|-
T Consensus 91 ~d~~~~~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~ 130 (224)
T PF09623_consen 91 EDNEAFADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYA 130 (224)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHH
Confidence 34556777887777766555 5677999999977666663
No 36
>PLN02347 GMP synthetase
Probab=36.17 E-value=93 Score=30.74 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCC
Q 024509 32 DLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNH 88 (266)
Q Consensus 32 ~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~ 88 (266)
+.+++.+...++..+|||||-.=..+..++... +. ++++-+.+|.-..+...
T Consensus 220 ~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~a----lG-~~v~av~id~g~~~~~E 271 (536)
T PLN02347 220 ELIKATVGPDEHVICALSGGVDSTVAATLVHKA----IG-DRLHCVFVDNGLLRYKE 271 (536)
T ss_pred HHHHHHhccCCeEEEEecCChhHHHHHHHHHHH----hC-CcEEEEEEeCCCCChhH
Confidence 344555666788999999995433444444331 23 57888999977666544
No 37
>PRK13980 NAD synthetase; Provisional
Probab=36.14 E-value=1.2e+02 Score=26.78 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEeccee
Q 024509 18 SVEELSTNLADYIADLSEASVKER--GVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADER 82 (266)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~--~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr 82 (266)
+.+.+.+.+...|. +.+.+. ..+.++||||-.=..+..++... +.=.++..+.++-.
T Consensus 9 ~~~~~~~~l~~~l~----~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~----~~~~~v~av~~~~~ 67 (265)
T PRK13980 9 DYEKVREIIVDFIR----EEVEKAGAKGVVLGLSGGIDSAVVAYLAVKA----LGKENVLALLMPSS 67 (265)
T ss_pred CHHHHHHHHHHHHH----HHHHHcCCCcEEEECCCCHHHHHHHHHHHHH----hCccceEEEEeeCC
Confidence 45555555555554 455443 58899999994422333333221 11125677776644
No 38
>PRK00074 guaA GMP synthase; Reviewed
Probab=35.51 E-value=98 Score=30.28 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecC
Q 024509 30 IADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVA 85 (266)
Q Consensus 30 i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp 85 (266)
+.+.|++.+.. ++..+|+|||-.=..+..++... +. .++..+.+|....+
T Consensus 205 ~~~~l~~~v~~-~~vlva~SGGvDS~vll~ll~~~----lg-~~v~av~vd~g~~~ 254 (511)
T PRK00074 205 AIEEIREQVGD-KKVILGLSGGVDSSVAAVLLHKA----IG-DQLTCVFVDHGLLR 254 (511)
T ss_pred HHHHHHHhcCC-CcEEEEeCCCccHHHHHHHHHHH----hC-CceEEEEEeCCCCC
Confidence 34555566654 78999999994433333343321 22 36888888987654
No 39
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=35.08 E-value=23 Score=17.95 Aligned_cols=12 Identities=42% Similarity=0.719 Sum_probs=9.4
Q ss_pred cCCCCceeccCC
Q 024509 158 MGSDGHVASLFP 169 (266)
Q Consensus 158 ~G~DGHiAslfP 169 (266)
-|..||++..-|
T Consensus 6 C~~~GH~~~~Cp 17 (18)
T PF00098_consen 6 CGEPGHIARDCP 17 (18)
T ss_dssp TSCSSSCGCTSS
T ss_pred CCCcCcccccCc
Confidence 378899998766
No 40
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=34.79 E-value=1.6e+02 Score=28.15 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=37.2
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------hHHHHHHHhcccCCCCCCCCc
Q 024509 12 ELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGS------------------LIGLMGKLCEAPYNKTVDWAK 73 (266)
Q Consensus 12 ~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs------------------tp~~l~~ll~~~~~~~i~w~~ 73 (266)
-+++.++. +|+..+.+.+.. .....+--.+.+.||. ||..++.++.. ..+++++
T Consensus 78 aLil~Ptr-eLa~Qi~~~~~~----~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~---~~~~l~~ 149 (456)
T PRK10590 78 ALILTPTR-ELAAQIGENVRD----YSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ---NAVKLDQ 149 (456)
T ss_pred EEEEeCcH-HHHHHHHHHHHH----HhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc---CCccccc
Confidence 46677775 455555555543 2222233345556664 34444444432 3578899
Q ss_pred ceEEecceee
Q 024509 74 WYIFWADERV 83 (266)
Q Consensus 74 v~~f~~DEr~ 83 (266)
+.++-+||--
T Consensus 150 v~~lViDEah 159 (456)
T PRK10590 150 VEILVLDEAD 159 (456)
T ss_pred ceEEEeecHH
Confidence 9999999953
No 41
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=34.13 E-value=1.5e+02 Score=26.54 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCC
Q 024509 32 DLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAK 86 (266)
Q Consensus 32 ~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~ 86 (266)
+.++..+++.++..||+|||..-..+..+.... +- +++.-+-+|==++|.
T Consensus 8 ~~l~~~ik~~~kv~vAfSGGvDSslLa~la~~~----lG-~~v~AvTv~sP~~p~ 57 (269)
T COG1606 8 ERLKKAIKEKKKVVVAFSGGVDSSLLAKLAKEA----LG-DNVVAVTVDSPYIPR 57 (269)
T ss_pred HHHHHHHhhcCeEEEEecCCccHHHHHHHHHHH----hc-cceEEEEEecCCCCh
Confidence 345678888889999999995544444444221 11 455555555433343
No 42
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=33.23 E-value=1.2e+02 Score=31.69 Aligned_cols=115 Identities=14% Similarity=-0.002 Sum_probs=68.1
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhcC-cEEEEEcCCChHHHHH-H-------------------HhcccCCCCCC
Q 024509 12 ELRIHESVEELSTNLADYIADLSEASVKERG-VFAIALSGGSLIGLMG-K-------------------LCEAPYNKTVD 70 (266)
Q Consensus 12 ~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~-~~~l~lsGGstp~~l~-~-------------------ll~~~~~~~i~ 70 (266)
=+.+|++. +|++-=++.+ ++.+..-+ .+.++.=.|.||..-. . ++.........
T Consensus 118 AL~lYPtn-ALa~DQ~~rl----~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~ 192 (851)
T COG1205 118 ALLLYPTN-ALANDQAERL----RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWL 192 (851)
T ss_pred EEEEechh-hhHhhHHHHH----HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHH
Confidence 36788886 3444434444 34555555 6677776666653332 1 12211111122
Q ss_pred CCcceEEecceeecCCCChhhHHHHHHHHhcCCCCCCCCCeEeC---CCCCCHHHHHHHHHHHH
Q 024509 71 WAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKVPIVPSHVHSI---NDSLSAEEAADEYEFDI 131 (266)
Q Consensus 71 w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll~~~~i~~~~v~~~---~~~~d~~~~a~~y~~~i 131 (266)
.+++.++-+||-..=.+--.||-.++-+.|++.+.....+...+ .+-++|.+.+..+....
T Consensus 193 ~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~ 256 (851)
T COG1205 193 LRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRD 256 (851)
T ss_pred HhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCc
Confidence 37899999999887777788999888888888776544333333 33347877776664443
No 43
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=33.08 E-value=1.1e+02 Score=29.27 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=21.3
Q ss_pred ceeEEEeccCCCCceeccCCCCC
Q 024509 150 KFDLILLGMGSDGHVASLFPNHS 172 (266)
Q Consensus 150 ~~Dl~lLG~G~DGHiAslfP~~~ 172 (266)
.+|.++|--|.||+=.-.-||..
T Consensus 108 ~ydavvLaYGa~~dR~L~IPGe~ 130 (468)
T KOG1800|consen 108 NYDAVVLAYGADGDRRLDIPGEE 130 (468)
T ss_pred cccEEEEEecCCCCcccCCCCcc
Confidence 68999999999999999999974
No 44
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=31.85 E-value=3.5e+02 Score=25.96 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=31.8
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHH--HHHhcc
Q 024509 7 HRDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLM--GKLCEA 63 (266)
Q Consensus 7 ~~~~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l--~~ll~~ 63 (266)
...+.+++.++|.+|..+.+.+.+. +++.-.++.++-.+...+ .+.|..
T Consensus 61 ~~~g~~v~~a~t~~eA~~~v~~i~~--------~~~~~~vv~~kS~~~eeigl~~~L~~ 111 (432)
T TIGR00273 61 TQRGGHVYYAKTAEEARKIIGKVAQ--------EKNGKKVVKSKSMVSEEIGLNEVLEK 111 (432)
T ss_pred HHCCCEEEEECCHHHHHHHHHHHHH--------HhCCCEEEEcCchHHHHhCCHHHHHh
Confidence 4467899999999887777665554 445557777765444333 455544
No 45
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=31.76 E-value=47 Score=19.42 Aligned_cols=17 Identities=41% Similarity=0.538 Sum_probs=11.2
Q ss_pred cCcEEEEEc-CCChHHHH
Q 024509 41 RGVFAIALS-GGSLIGLM 57 (266)
Q Consensus 41 ~~~~~l~ls-GGstp~~l 57 (266)
+|...|++| +|.+|..-
T Consensus 2 ~g~LqI~ISTnG~sP~la 19 (30)
T PF14824_consen 2 RGPLQIAISTNGKSPRLA 19 (30)
T ss_dssp -TTEEEEEEESSS-HHHH
T ss_pred CCCeEEEEECCCCChHHH
Confidence 578889995 67888543
No 46
>PTZ00323 NAD+ synthase; Provisional
Probab=31.27 E-value=73 Score=28.87 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC
Q 024509 18 SVEELSTNLADYIADLSEASVKERGVFAIALSGGS 52 (266)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs 52 (266)
|++++.+.....|.+.+++. ..+.++|+||||-
T Consensus 25 ~~~~~i~~~~~~L~~~l~~~--g~~~vVVglSGGV 57 (294)
T PTZ00323 25 NPAAWIEKKCAKLNEYMRRC--GLKGCVTSVSGGI 57 (294)
T ss_pred CHHHHHHHHHHHHHHHHHHc--CCCcEEEECCCCH
Confidence 34556655555555443331 2678999999993
No 47
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=30.89 E-value=1.2e+02 Score=29.58 Aligned_cols=76 Identities=18% Similarity=0.175 Sum_probs=47.3
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhc---------------ccCCCCCCCCcceE
Q 024509 12 ELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCE---------------APYNKTVDWAKWYI 76 (266)
Q Consensus 12 ~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~---------------~~~~~~i~w~~v~~ 76 (266)
-+++.+|. ||+..+++.+........ +--++.+.||.+...-...+. ......++.+++.+
T Consensus 102 aLil~PTR-ELA~Qi~~~~~~~~~~~~---~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTR-ELAVQIAEELRKLGKNLG---GLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCH-HHHHHHHHHHHHHHhhcC---CccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCE
Confidence 68888997 788888777765332211 233677788876433222222 11234789999999
Q ss_pred Eecce--eecCCCChhh
Q 024509 77 FWADE--RVVAKNHSDS 91 (266)
Q Consensus 77 f~~DE--r~vp~~~~~S 91 (266)
+-+|| |.+..+-.+.
T Consensus 178 lVlDEADrmLd~Gf~~~ 194 (513)
T COG0513 178 LVLDEADRMLDMGFIDD 194 (513)
T ss_pred EEeccHhhhhcCCCHHH
Confidence 99999 5666643333
No 48
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=30.81 E-value=1.6e+02 Score=28.24 Aligned_cols=65 Identities=22% Similarity=0.182 Sum_probs=36.3
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC-------------------hHHHHHHHhcccCCCCCCC
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGS-------------------LIGLMGKLCEAPYNKTVDW 71 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs-------------------tp~~l~~ll~~~~~~~i~w 71 (266)
--++++++. +|+....+.+.. .....+.-+..+.||. ||..++.+... ..+.+
T Consensus 164 ~aLil~Ptr-eLa~Q~~~~~~~----l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~---~~~~l 235 (475)
T PRK01297 164 RALIIAPTR-ELVVQIAKDAAA----LTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR---GEVHL 235 (475)
T ss_pred eEEEEeCcH-HHHHHHHHHHHH----hhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc---CCccc
Confidence 357788886 555555555433 2222233344555652 34444433322 35677
Q ss_pred CcceEEecceee
Q 024509 72 AKWYIFWADERV 83 (266)
Q Consensus 72 ~~v~~f~~DEr~ 83 (266)
+++.++-+||-.
T Consensus 236 ~~l~~lViDEah 247 (475)
T PRK01297 236 DMVEVMVLDEAD 247 (475)
T ss_pred ccCceEEechHH
Confidence 899999999954
No 49
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=30.48 E-value=1.7e+02 Score=23.53 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=19.3
Q ss_pred cEEEEEcCCChHHHHHHHhccc-CCCCCCCCcceEEecce
Q 024509 43 VFAIALSGGSLIGLMGKLCEAP-YNKTVDWAKWYIFWADE 81 (266)
Q Consensus 43 ~~~l~lsGGstp~~l~~ll~~~-~~~~i~w~~v~~f~~DE 81 (266)
+..+++|||..=..+..++... ....++| ++..+.+|-
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~-~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGF-ELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCe-EEEEEEEEC
Confidence 3579999995533333333221 0011233 366777774
No 50
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=30.39 E-value=1.7e+02 Score=21.13 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=16.0
Q ss_pred ceeEEEeccCCCCceeccCCCC
Q 024509 150 KFDLILLGMGSDGHVASLFPNH 171 (266)
Q Consensus 150 ~~Dl~lLG~G~DGHiAslfP~~ 171 (266)
.+|++++|....+.+...+-|+
T Consensus 93 ~~dlvvig~~~~~~~~~~~~~~ 114 (130)
T cd00293 93 GADLIVMGSRGRSGLRRLLLGS 114 (130)
T ss_pred CCCEEEEcCCCCCccceeeecc
Confidence 6899999988777665544443
No 51
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=30.28 E-value=1.5e+02 Score=23.29 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcC--cEEEEEcCCChHHHHHH
Q 024509 17 ESVEELSTNLADYIADLSEASVKERG--VFAIALSGGSLIGLMGK 59 (266)
Q Consensus 17 ~~~~~l~~~~a~~i~~~i~~~i~~~~--~~~l~lsGGstp~~l~~ 59 (266)
.+.++. +.+++.|.+.+.+.-++.+ +.++.+|||.--..+|-
T Consensus 65 ~t~~d~-~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~ 108 (124)
T TIGR03642 65 LSDEDI-LTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIIL 108 (124)
T ss_pred CCHHHH-HHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHH
Confidence 344443 3444566666655444444 58999999977666663
No 52
>PRK00768 nadE NAD synthetase; Reviewed
Probab=30.01 E-value=76 Score=28.40 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCC
Q 024509 18 SVEELSTNLADYIADLSEASVKER--GVFAIALSGG 51 (266)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~--~~~~l~lsGG 51 (266)
+++...+.+.++|. +.+++. ..++|+||||
T Consensus 17 ~~~~~~~~i~~~L~----~~l~~~g~~g~VlGlSGG 48 (268)
T PRK00768 17 DPEEEIRRRVDFLK----DYLKKSGLKSLVLGISGG 48 (268)
T ss_pred CHHHHHHHHHHHHH----HHHHHcCCCeEEEECCCC
Confidence 45555555445544 455443 5679999999
No 53
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=29.56 E-value=3.1e+02 Score=22.27 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=30.3
Q ss_pred cEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHHHhcCCCCCCC
Q 024509 43 VFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKVPIVP 108 (266)
Q Consensus 43 ~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll~~~~i~~ 108 (266)
++.+++|||..=..+..++.... ....+ ++..+.+|.-+-+ ++ ......+++ +.+.+++|-
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~-~~~~~-~v~~v~vd~g~~~-~~-~~~~~~~~~-~~~~~gi~~ 61 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQ-PKLKI-RLIAAHVDHGLRP-ES-DEEAEFVQQ-FCKKLNIPL 61 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHH-HHcCC-CEEEEEeCCCCCh-hH-HHHHHHHHH-HHHHcCCCE
Confidence 36799999955334433332210 01233 4888888976632 11 112333333 445566653
No 54
>PRK00876 nadE NAD synthetase; Reviewed
Probab=29.09 E-value=2.2e+02 Score=26.15 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEeccee
Q 024509 18 SVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADER 82 (266)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr 82 (266)
+.++..+.+-+.|.+.+++.... ..+.++||||-.=..+..++... +.-.++..+.+++.
T Consensus 11 ~~~~~~e~i~~~l~~~V~~~~~~-~~VvVgLSGGIDSSvvaaLa~~a----~g~~~v~av~~~~~ 70 (326)
T PRK00876 11 DAAAEAERIRAAIREQVRGTLRR-RGVVLGLSGGIDSSVTAALCVRA----LGKERVYGLLMPER 70 (326)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCC-CCEEEEccCCHHHHHHHHHHHHh----hCCCcEEEEEecCC
Confidence 44444444444444433332222 37899999994322333333221 11146676666654
No 55
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=28.97 E-value=2.1e+02 Score=27.91 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=36.8
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------hHHHHHHHhcccCCCCCCCC
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGS------------------LIGLMGKLCEAPYNKTVDWA 72 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs------------------tp~~l~~ll~~~~~~~i~w~ 72 (266)
.-+++.++. +|+..+.+.+.. ....-+.-+.++.||. ||..+..++.. ..+..+
T Consensus 198 ~aLIL~PTr-eLa~Qi~~~~~~----l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~---~~~~l~ 269 (518)
T PLN00206 198 LAMVLTPTR-ELCVQVEDQAKV----LGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK---HDIELD 269 (518)
T ss_pred eEEEEeCCH-HHHHHHHHHHHH----HhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc---CCccch
Confidence 456777886 455544444332 2222233345566664 34344444443 367889
Q ss_pred cceEEecceee
Q 024509 73 KWYIFWADERV 83 (266)
Q Consensus 73 ~v~~f~~DEr~ 83 (266)
++.++-+||--
T Consensus 270 ~v~~lViDEad 280 (518)
T PLN00206 270 NVSVLVLDEVD 280 (518)
T ss_pred heeEEEeecHH
Confidence 99999999953
No 56
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=27.84 E-value=3.5e+02 Score=24.19 Aligned_cols=65 Identities=18% Similarity=0.118 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeec
Q 024509 18 SVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVV 84 (266)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~v 84 (266)
+.++..+.+.+.+.+.++++ ....++++||||-.=.....++...-.....-.++.-+.+..+.+
T Consensus 4 d~~~~~~~~~~fl~~~l~~~--~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~ 68 (268)
T COG0171 4 DLEEEINRLVDFLRDYLKKA--GFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYT 68 (268)
T ss_pred CHHHHHHHHHHHHHHHHHHc--CCCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCc
Confidence 45667777777777665522 445789999999332222222221100112224566666666654
No 57
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=27.66 E-value=4.9e+02 Score=25.55 Aligned_cols=115 Identities=14% Similarity=0.184 Sum_probs=67.5
Q ss_pred EEeCCHHHHHHHHH-------HHHHHHHHHHHHhcCcEE-EEE--cCC--ChHHHHHHHhcccCCCCCCCCcceE-Eecc
Q 024509 14 RIHESVEELSTNLA-------DYIADLSEASVKERGVFA-IAL--SGG--SLIGLMGKLCEAPYNKTVDWAKWYI-FWAD 80 (266)
Q Consensus 14 ~v~~~~~~l~~~~a-------~~i~~~i~~~i~~~~~~~-l~l--sGG--stp~~l~~ll~~~~~~~i~w~~v~~-f~~D 80 (266)
+|+++..-+.+++. +.+.+.+..+-+.+++.+ ++| .|| |-..-++.++....+..+ ++|.+ .++|
T Consensus 71 iv~q~~~ri~~ai~~g~~~~n~~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~--~~v~vH~~~D 148 (501)
T TIGR01307 71 VVYQDLVRISQAIKDGEFFANPALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGI--EKVVLHAFTD 148 (501)
T ss_pred eeccchHHHHHHHhcCCcccCHHHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCC--CeEEEEEecC
Confidence 46777776666664 345555555555667776 455 466 445666666554322333 45554 6789
Q ss_pred eeecCCCChhhHHHHHHHHhcCCCC-----CCCCCeEeCCCCCCHHHHHHHHHHHH
Q 024509 81 ERVVAKNHSDSNYKLAKEGLLSKVP-----IVPSHVHSINDSLSAEEAADEYEFDI 131 (266)
Q Consensus 81 Er~vp~~~~~Sn~~~l~~~ll~~~~-----i~~~~v~~~~~~~d~~~~a~~y~~~i 131 (266)
=|=+|+.+...+-..+.+.+- .++ --..+.|.||-+...+..-..|+...
T Consensus 149 GRD~~p~s~~~~~~~l~~~~~-~~~~~~iasv~GRyyaMDRd~rw~rv~~ay~~~~ 203 (501)
T TIGR01307 149 GRDTAPKSAESYLEQLQAFLK-EIGNGRIATISGRYYAMDRDQRWDRVEIAYKAIT 203 (501)
T ss_pred CCCCCchhHHHHHHHHHHHHH-HhCCEEEEEEeCcceeecCccchHHHHHHHHHHh
Confidence 998887766666666665553 222 11235667776666666566665543
No 58
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=27.49 E-value=1.3e+02 Score=25.32 Aligned_cols=41 Identities=12% Similarity=0.006 Sum_probs=27.7
Q ss_pred HHHHHhcC-cEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecce
Q 024509 35 EASVKERG-VFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADE 81 (266)
Q Consensus 35 ~~~i~~~~-~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DE 81 (266)
+.++++-+ ++.+..|||..=..+..|+.... .++.++++|-
T Consensus 6 ~~a~~~~~~~~~~s~SgGKDS~Vll~L~~~~~------~~~~v~f~DT 47 (212)
T TIGR00434 6 AWAYVTFGGHLVYSTSFGIQGAVLLDLVSKIS------PDIPVIFLDT 47 (212)
T ss_pred HHHHHhcCCCEEEEecCCHHHHHHHHHHHhcC------CCCcEEEecC
Confidence 34555445 78899999987777777776521 3466777774
No 59
>PRK00919 GMP synthase subunit B; Validated
Probab=27.14 E-value=1.6e+02 Score=26.80 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecC
Q 024509 31 ADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVA 85 (266)
Q Consensus 31 ~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp 85 (266)
.+.|++.+.. ++..+++|||-.=..+..++... +. .+++.+.+|--..+
T Consensus 12 ~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~----lG-~~v~aV~vD~G~~~ 60 (307)
T PRK00919 12 IEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRA----IG-DRLTPVFVDTGLMR 60 (307)
T ss_pred HHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHH----hC-CeEEEEEEECCCCC
Confidence 3445556655 89999999994433333343321 22 36888888876654
No 60
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=27.04 E-value=58 Score=28.48 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=23.8
Q ss_pred HHHHHHHHh--cCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecce
Q 024509 32 DLSEASVKE--RGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADE 81 (266)
Q Consensus 32 ~~i~~~i~~--~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DE 81 (266)
..|++.+++ .+.++|+||||-.=.....++... +.=++++-+.++-
T Consensus 7 ~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~~A----lg~~~v~~v~mp~ 54 (242)
T PF02540_consen 7 DFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAVKA----LGPDNVLAVIMPS 54 (242)
T ss_dssp HHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHHHH----HGGGEEEEEEEES
T ss_pred HHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHHHH----hhhcccccccccc
Confidence 333344433 358899999993322223333221 1114677777763
No 61
>PLN02772 guanylate kinase
Probab=26.88 E-value=52 Score=31.19 Aligned_cols=56 Identities=13% Similarity=0.242 Sum_probs=31.5
Q ss_pred HhcccceEEEE--eCccHHHHHHHHHhCCCCCCcccccccccc------cCCeEEEEecHHHHhc
Q 024509 202 INSASIVVVVV--TGESKAEAVHLAIDDLGPNCPSLPARMAQP------TNGKLVWFLDKPAASK 258 (266)
Q Consensus 202 i~~a~~iill~--~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~------~~~~~~~~~D~~Aa~~ 258 (266)
....+++++++ +|..|..++++++...+. .-.++++.--. ..+.-++|.+++....
T Consensus 131 ~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~-~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~ 194 (398)
T PLN02772 131 RGNAEKPIVISGPSGVGKGTLISMLMKEFPS-MFGFSVSHTTRAPREMEKDGVHYHFTERSVMEK 194 (398)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhhhccc-cccccccccCCCCcccccCCceEeeCCHHHHHH
Confidence 34456666666 788999999998775321 11233333221 1233477887665443
No 62
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=26.46 E-value=2.7e+02 Score=24.21 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhc--CcEEEEEcCCChHHHHHHHh
Q 024509 27 ADYIADLSEASVKER--GVFAIALSGGSLIGLMGKLC 61 (266)
Q Consensus 27 a~~i~~~i~~~i~~~--~~~~l~lsGGstp~~l~~ll 61 (266)
.+.+.+.+++.++++ ..+.++||||-.=..+..++
T Consensus 6 ~~~l~~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~ 42 (250)
T TIGR00552 6 VEEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALC 42 (250)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCcHHHHHHHHHH
Confidence 344555555666553 56789999994422333333
No 63
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=25.74 E-value=3.1e+02 Score=23.11 Aligned_cols=98 Identities=8% Similarity=0.062 Sum_probs=55.8
Q ss_pred HHHHhcCcEE-EEEcCCChHHHHH---HHhcccCCCCCCCCcceEEecceeecCCCC--------h---hhHHHHHHHHh
Q 024509 36 ASVKERGVFA-IALSGGSLIGLMG---KLCEAPYNKTVDWAKWYIFWADERVVAKNH--------S---DSNYKLAKEGL 100 (266)
Q Consensus 36 ~~i~~~~~~~-l~lsGGstp~~l~---~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~--------~---~Sn~~~l~~~l 100 (266)
++.++.+..+ +.++--.+.-++. +|+.. +.-++++|.+..+.+|+++... . ...+..+--.+
T Consensus 21 ~Aa~~~d~l~vFVV~eD~S~Fpf~~R~~LVk~---G~~~L~NV~V~~~g~YiIS~aTFPsYFlK~~~~~~~~~~~lD~~i 97 (182)
T PF08218_consen 21 QAAKECDWLHVFVVSEDRSLFPFADRYELVKE---GTADLPNVTVHPGGDYIISSATFPSYFLKDEDDVIKAQAELDATI 97 (182)
T ss_pred HHHHhCCEEEEEEEccccCcCCHHHHHHHHHH---HhCcCCCEEEEcCCCeeeecccChhhhccchhHHHHHHHHHHHHH
Confidence 4555666654 5567777755553 45544 5678999999999999875431 1 11222232233
Q ss_pred cCCCCCCCCCe-EeCCCCCCHHHHHHHHHHHHHHhhh
Q 024509 101 LSKVPIVPSHV-HSINDSLSAEEAADEYEFDIRQLVK 136 (266)
Q Consensus 101 l~~~~i~~~~v-~~~~~~~d~~~~a~~y~~~i~~~~~ 136 (266)
|...=.|.=+| +++-|+.+...-.+.|.+.+++.++
T Consensus 98 F~~~IAp~L~It~RfVG~EP~~~vT~~YN~~M~~~Lp 134 (182)
T PF08218_consen 98 FKKYIAPALGITKRFVGEEPFSPVTRIYNEAMKEILP 134 (182)
T ss_pred HHHHhhHhcCcccceeCCCCCCHHHHHHHHHHHHhcc
Confidence 33311122222 2233444334568999999998765
No 64
>PTZ00110 helicase; Provisional
Probab=25.33 E-value=1.8e+02 Score=28.69 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=36.7
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------hHHHHHHHhcccCCCCCCCCc
Q 024509 12 ELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGS------------------LIGLMGKLCEAPYNKTVDWAK 73 (266)
Q Consensus 12 ~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs------------------tp~~l~~ll~~~~~~~i~w~~ 73 (266)
-+++.++. +|+..+.+.+... ....+--..++.||. ||..+.+++.. ..++.++
T Consensus 206 ~LIL~PTr-eLa~Qi~~~~~~~----~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~---~~~~l~~ 277 (545)
T PTZ00110 206 VLVLAPTR-ELAEQIREQCNKF----GASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES---NVTNLRR 277 (545)
T ss_pred EEEECChH-HHHHHHHHHHHHH----hcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc---CCCChhh
Confidence 35666775 5666655555432 222222244455663 45555555543 3467899
Q ss_pred ceEEecceee
Q 024509 74 WYIFWADERV 83 (266)
Q Consensus 74 v~~f~~DEr~ 83 (266)
+.++-+||--
T Consensus 278 v~~lViDEAd 287 (545)
T PTZ00110 278 VTYLVLDEAD 287 (545)
T ss_pred CcEEEeehHH
Confidence 9999999953
No 65
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=25.24 E-value=1.1e+02 Score=29.18 Aligned_cols=51 Identities=10% Similarity=-0.032 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceee
Q 024509 32 DLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 32 ~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (266)
..+.+.+....+..+|+|||..=..+..++.........+ +++.+.+|.-.
T Consensus 6 ~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~-~l~a~hvnhgl 56 (436)
T PRK10660 6 LTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTENPGV-TLRAIHVHHGL 56 (436)
T ss_pred HHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhcCCC-eEEEEEEeCCC
Confidence 4455667778899999999955444544443211011222 57888888655
No 66
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=25.11 E-value=5.4e+02 Score=24.54 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhc
Q 024509 18 SVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCE 62 (266)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~ 62 (266)
+.++..+.+.+.+.+.++..+....+..+.||||-.=..+..++.
T Consensus 230 ~~~~~~e~l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~ 274 (467)
T TIGR01536 230 SEEDLVDELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIAR 274 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHHH
Confidence 556666777777777666666666778889999944334433433
No 67
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=24.81 E-value=1.7e+02 Score=25.12 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHhc-CcEEEEEcCCChHHHHH
Q 024509 23 STNLADYIADLSEASVKER-GVFAIALSGGSLIGLMG 58 (266)
Q Consensus 23 ~~~~a~~i~~~i~~~i~~~-~~~~l~lsGGstp~~l~ 58 (266)
.+++|+.|.+.+.+.-++. -..+++++||.--..+|
T Consensus 99 n~~aa~~I~~~v~~Lt~d~~~~lH~sIAGGRKtMg~~ 135 (209)
T TIGR02584 99 NEAAANFIVQTVAPLCAAQDHQLHASIAGGRKTMGFY 135 (209)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCcHHHHHHH
Confidence 4678888888888776434 46789999996665555
No 68
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=24.01 E-value=1.1e+02 Score=27.52 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCChH-HHHHH
Q 024509 24 TNLADYIADLSEASVKERGVFAIALSGGSLI-GLMGK 59 (266)
Q Consensus 24 ~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp-~~l~~ 59 (266)
+.+++.+.+.++++.++.+.-.|+|+||-.- ..+.+
T Consensus 240 ~~l~~~l~~~~~~~~~~~g~~~vvlsGGVa~N~~L~~ 276 (305)
T TIGR00329 240 ETAFDHLIEKTKRALKDTGPKELVLVGGVSANKRLRE 276 (305)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEECCHHHHHHHHH
Confidence 4566777777777777777778999999665 33344
No 69
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=23.91 E-value=1.9e+02 Score=25.14 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=26.8
Q ss_pred HHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecce
Q 024509 33 LSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADE 81 (266)
Q Consensus 33 ~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DE 81 (266)
.+++.+++.+++.+++|||..=..+..++... . .++..+.+|-
T Consensus 4 ~l~~~l~~~~~vlVa~SGGvDSs~ll~la~~~-----g-~~v~av~~~~ 46 (252)
T TIGR00268 4 NLRNFLKEFKKVLIAYSGGVDSSLLAAVCSDA-----G-TEVLAITVVS 46 (252)
T ss_pred HHHHHHHhcCCEEEEecCcHHHHHHHHHHHHh-----C-CCEEEEEecC
Confidence 45567788899999999994433333333331 2 3466666664
No 70
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=23.86 E-value=1.1e+02 Score=27.83 Aligned_cols=43 Identities=12% Similarity=0.332 Sum_probs=29.0
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHH-HHHHh
Q 024509 19 VEELS----TNLADYIADLSEASVKERGVFAIALSGGSLIGL-MGKLC 61 (266)
Q Consensus 19 ~~~l~----~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~-l~~ll 61 (266)
..+++ ..+++.+.+.+++..++.+.-+++++||-.-.. +.+.+
T Consensus 232 ~~~iA~~~q~~l~~~l~~~~~~~~~~~~~~~v~lsGGVa~N~~l~~~l 279 (314)
T TIGR03723 232 KADIAASFQAAVVDVLVEKTKRALKKTGLKTLVVAGGVAANSRLRERL 279 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHH
Confidence 44555 456777777777777777777899999966533 34433
No 71
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=23.83 E-value=1.2e+02 Score=23.89 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=13.0
Q ss_pred CChhhHHHHHHHHhcCCCCCCCCCeEeCCCC
Q 024509 87 NHSDSNYKLAKEGLLSKVPIVPSHVHSINDS 117 (266)
Q Consensus 87 ~~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~ 117 (266)
.+...|..+.++.+- ..++ .++..+...
T Consensus 80 ~~T~ena~~~~~~~~-~~~~--~~iilVT~~ 107 (155)
T PF02698_consen 80 TNTYENARFSKRLLK-ERGW--QSIILVTSP 107 (155)
T ss_dssp -SHHHHHHHHHHHHH-T-SS--S-EEEE--C
T ss_pred CCHHHHHHHHHHHHH-hhcC--CeEEEECCH
Confidence 456667777766443 3333 355555443
No 72
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=23.27 E-value=1.1e+02 Score=27.72 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHH
Q 024509 24 TNLADYIADLSEASVKERGVFAIALSGGSLIGL 56 (266)
Q Consensus 24 ~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~ 56 (266)
..+++.+.+.+++..++.+.-+|+|+||---..
T Consensus 224 ~~l~~~l~~~a~~~~~~~g~~~lvlsGGVa~N~ 256 (322)
T TIGR03722 224 ETAFAMLVEVTERALAHTGKKEVLLVGGVAANR 256 (322)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeccHHHHH
Confidence 345566666666666666777899999966533
No 73
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=22.34 E-value=6.3e+02 Score=23.65 Aligned_cols=93 Identities=15% Similarity=0.059 Sum_probs=57.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCC--cceEEecceeecCC
Q 024509 9 DRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWA--KWYIFWADERVVAK 86 (266)
Q Consensus 9 ~~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~--~v~~f~~DEr~vp~ 86 (266)
...++.+|++..++++++.... ..+....+.+-|=-.|.....|+.. ++.-+ -|++|-.|=|--..
T Consensus 53 p~L~i~~~~~Kk~la~avi~~a--------~~~r~~kff~HGqFn~~lwlaLl~g----~~~~~k~~WhIWGaDLYe~~~ 120 (360)
T PF07429_consen 53 PALNIECFSSKKALAQAVIAKA--------KADRADKFFLHGQFNPWLWLALLFG----KIKLKKCYWHIWGADLYEDSR 120 (360)
T ss_pred CccceEEecCHHHHHHHHHHHH--------hhCccceEEEeccCcHHHHHHHHcC----CccccceEEEEeCchhhcccc
Confidence 4567899999998876654422 1234557888887777666666554 22222 37899999875332
Q ss_pred CChhhHHHHHHHHhcCCCCCCCCCeEeCCCC
Q 024509 87 NHSDSNYKLAKEGLLSKVPIVPSHVHSINDS 117 (266)
Q Consensus 87 ~~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~ 117 (266)
+=......++|+.-.++++ .|+...|+
T Consensus 121 ~~k~rlfy~lRr~aq~rvg----~V~at~GD 147 (360)
T PF07429_consen 121 SLKFRLFYFLRRLAQKRVG----HVFATRGD 147 (360)
T ss_pred ccchhHHHHHHHHHHhhcC----eEEEEcch
Confidence 2233444667777777775 56654443
No 74
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=22.02 E-value=3.2e+02 Score=19.85 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=22.1
Q ss_pred EEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecC
Q 024509 45 AIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVA 85 (266)
Q Consensus 45 ~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp 85 (266)
.+++|||..=..+..++... .+ ++..+.+|..+-|
T Consensus 2 ~v~~SGG~DS~~ll~~l~~~-----~~-~~~~~~~~~~~~~ 36 (103)
T cd01986 2 LVAFSGGKDSSVAAALLKKL-----GY-QVIAVTVDHGISP 36 (103)
T ss_pred EEEEeCcHHHHHHHHHHHHh-----CC-CEEEEEEcCCCcc
Confidence 68999995544444444331 11 6888888887754
No 75
>KOG3716 consensus Carnitine O-acyltransferase CPTI [Lipid transport and metabolism]
Probab=21.60 E-value=3.7e+02 Score=27.45 Aligned_cols=78 Identities=23% Similarity=0.191 Sum_probs=46.0
Q ss_pred cceEEecce--eecCCCChhhHHHHHHHHhcCCCC---CCCC-C-eEeCCCC------CCHHHHHHHHHHHHHHhhhhcc
Q 024509 73 KWYIFWADE--RVVAKNHSDSNYKLAKEGLLSKVP---IVPS-H-VHSINDS------LSAEEAADEYEFDIRQLVKTRM 139 (266)
Q Consensus 73 ~v~~f~~DE--r~vp~~~~~Sn~~~l~~~ll~~~~---i~~~-~-v~~~~~~------~d~~~~a~~y~~~i~~~~~~~~ 139 (266)
...|+.+|| ++...+||.+-..+++..|-..-- .+.. | +..-||. -++.+ +..+....+..+
T Consensus 406 AafvvsLDee~~~~~~~d~~~l~~y~k~lLhG~g~nRWfDKsf~~iv~kNGr~G~n~EHSwaD-aai~~H~~E~~l---- 480 (764)
T KOG3716|consen 406 AAFVVSLDEEERWGDEEDPESLSNYAKNLLHGDGYNRWFDKSFNYIVSKNGRVGLNAEHSWAD-AAIMDHLWENVL---- 480 (764)
T ss_pred ceEEEEecCccccCCcCCHHHHHHHHHHHhcCCCccceeccceeEEEecCCccccccccCchh-hHHHHHHHHHHH----
Confidence 356677774 666666699999999876643321 1111 2 2222443 13322 445555554432
Q ss_pred ccccCCCCCCceeEEEeccCCCCcee
Q 024509 140 VCVSDISDCPKFDLILLGMGSDGHVA 165 (266)
Q Consensus 140 ~~~~~~~~~~~~Dl~lLG~G~DGHiA 165 (266)
..|..+||-++|||.-
T Consensus 481 ----------~~D~~~lgy~~~g~c~ 496 (764)
T KOG3716|consen 481 ----------YVDKFVLGYPEDGHCK 496 (764)
T ss_pred ----------hhceeeecCCCCcccc
Confidence 4799999999999965
No 76
>PRK09604 UGMP family protein; Validated
Probab=21.57 E-value=1.3e+02 Score=27.67 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=28.7
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHH-HHHh
Q 024509 19 VEELS----TNLADYIADLSEASVKERGVFAIALSGGSLIGLM-GKLC 61 (266)
Q Consensus 19 ~~~l~----~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l-~~ll 61 (266)
..+++ +.+++.+.+.++.+.++.+.-+|+|+||-.-..+ .+.+
T Consensus 227 ~~~iA~s~q~~l~~~l~~~~~~~~~~~~~~~lvlsGGVa~N~~L~~~l 274 (332)
T PRK09604 227 KADIAASFQAAVVDVLVIKTKRALKQTGVKTLVVAGGVAANSGLRERL 274 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEcChHHHHHHHHHHH
Confidence 44555 4466777777777777767778999999665333 3433
No 77
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=21.52 E-value=4.6e+02 Score=24.52 Aligned_cols=62 Identities=21% Similarity=0.262 Sum_probs=35.4
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------hHHHHHHHhcccCCCCCCCCcc
Q 024509 13 LRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGS------------------LIGLMGKLCEAPYNKTVDWAKW 74 (266)
Q Consensus 13 ~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs------------------tp~~l~~ll~~~~~~~i~w~~v 74 (266)
+++.++ .+++..+++.+.... ...+--+..+.||. ||..+.+++.. ..++.+++
T Consensus 77 lil~Pt-~eLa~Q~~~~~~~l~----~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~---~~~~~~~v 148 (434)
T PRK11192 77 LILTPT-RELAMQVADQARELA----KHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE---ENFDCRAV 148 (434)
T ss_pred EEECCc-HHHHHHHHHHHHHHH----ccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc---CCcCcccC
Confidence 455555 467777666654321 12222234445553 45455554433 45778899
Q ss_pred eEEeccee
Q 024509 75 YIFWADER 82 (266)
Q Consensus 75 ~~f~~DEr 82 (266)
.++-+||-
T Consensus 149 ~~lViDEa 156 (434)
T PRK11192 149 ETLILDEA 156 (434)
T ss_pred CEEEEECH
Confidence 99999994
No 78
>PRK08576 hypothetical protein; Provisional
Probab=21.41 E-value=3.8e+02 Score=25.83 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=34.4
Q ss_pred CHHHHHHH---HHHHHHHHHHHHHHhcC--cEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceee
Q 024509 18 SVEELSTN---LADYIADLSEASVKERG--VFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 18 ~~~~l~~~---~a~~i~~~i~~~i~~~~--~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (266)
|.+++.+. .-+.+.+.+.+.+++.+ ++.+++|||..=..+..++... . ..+..+++|.=.
T Consensus 206 ~~~~~~e~N~~~le~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~k~----~--~~V~aV~iDTG~ 270 (438)
T PRK08576 206 SLEKLIEANREVLEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKA----F--GDVTAVYVDTGY 270 (438)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHHHh----C--CCCEEEEeCCCC
Confidence 44444433 34555555555566655 8999999996544444444331 1 127778888543
No 79
>KOG3697 consensus Adaptor protein SHC and related proteins [Signal transduction mechanisms]
Probab=21.37 E-value=2e+02 Score=26.12 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=46.6
Q ss_pred CCCCCCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHH-H-HHhcccCCCCCCCCcceEEecc
Q 024509 3 FSGVHRDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLM-G-KLCEAPYNKTVDWAKWYIFWAD 80 (266)
Q Consensus 3 ~~~~~~~~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l-~-~ll~~~~~~~i~w~~v~~f~~D 80 (266)
+|-|+-.+|.|.+.-+...+....++. ++.++.+--+.|.+.-|..|-.+ | ...+. ...+|.-+++|-.|
T Consensus 78 r~~lq~a~m~I~itvst~sL~l~~~d~-----kqiianh~m~~isfasGgD~Dt~~~~ayvaK---D~~~rRac~Vlec~ 149 (345)
T KOG3697|consen 78 RSNLQFAGMSITLTISTSSLNLMTADC-----KQIIANHHMQSISFASGGDPDTADYVAYVAK---DPVNRRACHILECC 149 (345)
T ss_pred ccccccCCcceEEEeehhhhhhhhhHh-----hhhhhhccccccccccCCCchhhhHHhhhcc---CccccceeEEEecc
Confidence 456666778888887777666554432 34566777777888544444333 3 33333 56899999999887
Q ss_pred ee
Q 024509 81 ER 82 (266)
Q Consensus 81 Er 82 (266)
+=
T Consensus 150 ~g 151 (345)
T KOG3697|consen 150 DG 151 (345)
T ss_pred Cc
Confidence 64
No 80
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=20.97 E-value=2.9e+02 Score=24.97 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=26.9
Q ss_pred EEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHH
Q 024509 44 FAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKE 98 (266)
Q Consensus 44 ~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~ 98 (266)
..+|+|||-.=..+..++... +. .++..+.+|--..+.++.+.-..+.++
T Consensus 2 VlVa~SGGVDSsvla~ll~~~----lG-~~v~aV~vd~g~~~~~E~~~~~~~~~~ 51 (295)
T cd01997 2 VILALSGGVDSTVAAVLLHKA----IG-DRLTCVFVDNGLLRKNEAERVEELFSK 51 (295)
T ss_pred EEEEEcCChHHHHHHHHHHHH----hC-CcEEEEEecCCCCChHHHHHHHHHHHH
Confidence 578999995433444444331 12 257888888765554433333333333
No 81
>PF09793 AD: Anticodon-binding domain; InterPro: IPR019181 Sm and Sm-like proteins of the Lsm (like Sm) domain family are generally involved in essential RNA-processing tasks []. All the LSM proteins are evolutionarily conserved in eukaryotes with an N-terminal Lsm domain to bind nucleic acids, followed by an as yet uncharacterised C-terminal region, some of which have a C-terminal methyltransferase domain. This entry represents the central region of approximately 100 residues, which is conserved from plants to humans and is frequently found in association with Lsm domain-containing proteins.
Probab=20.65 E-value=89 Score=22.92 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=26.8
Q ss_pred cCCChH--HHHHHHhcccCCCCCCCCcceEEecceeec-CCCChh
Q 024509 49 SGGSLI--GLMGKLCEAPYNKTVDWAKWYIFWADERVV-AKNHSD 90 (266)
Q Consensus 49 sGGstp--~~l~~ll~~~~~~~i~w~~v~~f~~DEr~v-p~~~~~ 90 (266)
.-|-|| ..+|..+... .....|+.=.|.-+||-.+ ||-.++
T Consensus 29 ~~~vs~egQ~lF~~l~Kt-~~dv~W~g~~IiV~d~V~I~pPY~~~ 72 (91)
T PF09793_consen 29 GPGVSPEGQKLFDALSKT-IPDVRWDGKNIIVLDEVKISPPYKVE 72 (91)
T ss_pred CCCcCHHHHHHHHHHHhh-CCCCEECCCeEEEeCceEEcCCCCcc
Confidence 357666 5667766542 1348899999999998664 554443
No 82
>PRK13981 NAD synthetase; Provisional
Probab=20.33 E-value=2.8e+02 Score=27.13 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceee
Q 024509 19 VEELSTNLADYIADLSEASVKER--GVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 19 ~~~l~~~~a~~i~~~i~~~i~~~--~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (266)
.+++.+++...|. +.+++. +.++|+||||-.=..+..++... +.-++|+.+.+.-+.
T Consensus 260 ~~~~~~~l~~~l~----~~~~~~~~~~~vvglSGGiDSa~~a~la~~a----~g~~~v~~~~~p~~~ 318 (540)
T PRK13981 260 EAEDYRALVLGLR----DYVRKNGFPGVVLGLSGGIDSALVAAIAVDA----LGAERVRAVMMPSRY 318 (540)
T ss_pred HHHHHHHHHHHHH----HHHHHcCCCeEEEECCCCHHHHHHHHHHHHH----hCcCcEEEEECCCCC
Confidence 3445555554444 555443 67899999994322333333221 111467766666544
No 83
>PRK05434 phosphoglyceromutase; Provisional
Probab=20.20 E-value=7.7e+02 Score=24.22 Aligned_cols=115 Identities=16% Similarity=0.235 Sum_probs=63.9
Q ss_pred EEeCCHHHHHHHHH-------HHHHHHHHHHHHhcCcEE-EEE--cCC--ChHHHHHHHhcccCCCCCCCCcceE-Eecc
Q 024509 14 RIHESVEELSTNLA-------DYIADLSEASVKERGVFA-IAL--SGG--SLIGLMGKLCEAPYNKTVDWAKWYI-FWAD 80 (266)
Q Consensus 14 ~v~~~~~~l~~~~a-------~~i~~~i~~~i~~~~~~~-l~l--sGG--stp~~l~~ll~~~~~~~i~w~~v~~-f~~D 80 (266)
+|+++..-+..++. +.+.+.+..+-+.++..+ ++| .|| |...-++.++.......+ ++|.+ .++|
T Consensus 75 iv~q~~~~i~~ai~~g~~~~n~~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~--~~v~vH~~~D 152 (507)
T PRK05434 75 IVYQDLTRINKAIEDGSFFENPALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGV--KKVYVHAFLD 152 (507)
T ss_pred eeccchHHHHHHHhcCCcccCHHHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHHHHcCC--CEEEEEEecC
Confidence 45666666666654 234444444444556776 555 366 445555655544322333 56655 6789
Q ss_pred eeecCCCChhhHHHHHHHHhcCCCCC-----CCCCeEeCCCCCCHHHHHHHHHHHH
Q 024509 81 ERVVAKNHSDSNYKLAKEGLLSKVPI-----VPSHVHSINDSLSAEEAADEYEFDI 131 (266)
Q Consensus 81 Er~vp~~~~~Sn~~~l~~~ll~~~~i-----~~~~v~~~~~~~d~~~~a~~y~~~i 131 (266)
=|=+|+.+...+-..+.+.+- .++. -..+.|.||-+...+..-..|+...
T Consensus 153 GRD~~p~s~~~~i~~l~~~~~-~~~~~~iasv~GRyyamDRd~rw~rv~~a~~~~~ 207 (507)
T PRK05434 153 GRDTPPKSALGYLEELEAKLA-ELGVGRIASVSGRYYAMDRDKRWDRVEKAYDALV 207 (507)
T ss_pred CCCCCchhHHHHHHHHHHHHH-HhCCeeEEEEeccccccccccchHHHHHHHHHHh
Confidence 888886666666666655443 2221 1235566766655655555555543
No 84
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=20.19 E-value=1.3e+02 Score=23.46 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=23.5
Q ss_pred EEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceee
Q 024509 44 FAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 44 ~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (266)
..+++|||..=..+..++..... +. .++.++++|.-+
T Consensus 2 i~v~~SGGkDS~~ll~l~~~~~~-~~--~~~~~v~~dtg~ 38 (173)
T cd01713 2 VVVSFSGGKDSTVLLHLALKALP-EL--KPVPVIFLDTGY 38 (173)
T ss_pred eEEEecCChHHHHHHHHHHHhcc-cc--cCceEEEeCCCC
Confidence 57899999665555555543211 11 478888888754
No 85
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=20.10 E-value=3.9e+02 Score=26.87 Aligned_cols=63 Identities=30% Similarity=0.356 Sum_probs=39.7
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------hHHHHHHHhcccCCCCCCCCcc
Q 024509 13 LRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGS------------------LIGLMGKLCEAPYNKTVDWAKW 74 (266)
Q Consensus 13 ~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs------------------tp~~l~~ll~~~~~~~i~w~~v 74 (266)
+++.++. +|+..+++.+...... ..+--++.+.||. ||..+++++.. ..++.+++
T Consensus 78 LIL~PTr-eLa~Qv~~~l~~~~~~---~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r---~~l~l~~l 150 (629)
T PRK11634 78 LVLAPTR-ELAVQVAEAMTDFSKH---MRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR---GTLDLSKL 150 (629)
T ss_pred EEEeCcH-HHHHHHHHHHHHHHhh---cCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc---CCcchhhc
Confidence 5667775 6777777776543221 1233455666664 45555555443 45788999
Q ss_pred eEEeccee
Q 024509 75 YIFWADER 82 (266)
Q Consensus 75 ~~f~~DEr 82 (266)
.++-+||-
T Consensus 151 ~~lVlDEA 158 (629)
T PRK11634 151 SGLVLDEA 158 (629)
T ss_pred eEEEeccH
Confidence 99999995
Done!