Query 024509
Match_columns 266
No_of_seqs 153 out of 1048
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 09:28:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ico_A 6PGL, 6-phosphogluconol 100.0 1.9E-67 6.6E-72 466.9 24.5 241 9-260 22-267 (268)
2 3tx2_A Probable 6-phosphogluco 100.0 2.6E-67 9E-72 462.4 23.5 241 9-260 6-251 (251)
3 3oc6_A 6-phosphogluconolactona 100.0 3E-67 1E-71 461.3 23.8 238 9-259 6-248 (248)
4 3eb9_A 6-phosphogluconolactona 100.0 1.2E-64 4.1E-69 448.9 23.3 248 9-261 3-265 (266)
5 3hn6_A Glucosamine-6-phosphate 100.0 2.8E-63 9.5E-68 444.4 23.2 238 6-261 17-270 (289)
6 3css_A 6-phosphogluconolactona 100.0 3E-62 1E-66 434.0 18.7 248 8-260 3-266 (267)
7 3lwd_A 6-phosphogluconolactona 100.0 2.5E-61 8.6E-66 417.9 19.4 218 11-250 3-225 (226)
8 1y89_A DEVB protein; structura 100.0 4.5E-60 1.6E-64 413.5 22.1 235 11-260 2-238 (238)
9 3nwp_A 6-phosphogluconolactona 100.0 5.6E-60 1.9E-64 411.4 21.6 219 10-250 5-232 (233)
10 3lhi_A Putative 6-phosphogluco 100.0 1.4E-59 4.8E-64 408.8 21.0 217 11-250 3-231 (232)
11 3e15_A Glucose-6-phosphate 1-d 100.0 1E-59 3.5E-64 423.4 19.6 236 7-256 23-296 (312)
12 1vl1_A 6PGL, 6-phosphogluconol 100.0 2.2E-59 7.5E-64 407.4 19.6 217 12-253 15-232 (232)
13 1ne7_A Glucosamine-6-phosphate 100.0 7.2E-53 2.4E-57 377.8 23.5 232 11-260 1-248 (289)
14 2bkx_A Glucosamine-6-phosphate 100.0 9.2E-52 3.1E-56 361.2 21.8 229 11-260 1-242 (242)
15 1fs5_A Glucosamine-6-phosphate 100.0 2.3E-51 7.8E-56 363.7 23.5 232 11-260 1-248 (266)
16 2ri0_A Glucosamine-6-phosphate 100.0 4.8E-49 1.6E-53 342.5 23.8 220 10-259 1-234 (234)
17 2okg_A Central glycolytic gene 99.9 5.3E-24 1.8E-28 187.1 9.7 204 11-260 23-252 (255)
18 2r5f_A Transcriptional regulat 99.9 9.1E-23 3.1E-27 180.1 12.3 195 20-259 41-262 (264)
19 2gnp_A Transcriptional regulat 99.9 1.3E-21 4.3E-26 173.0 11.8 199 20-260 41-260 (266)
20 2o0m_A Transcriptional regulat 99.8 7.4E-21 2.5E-25 173.9 7.4 199 19-261 124-341 (345)
21 2w48_A Sorbitol operon regulat 99.8 7.5E-20 2.6E-24 165.1 12.6 198 19-259 92-313 (315)
22 3nze_A Putative transcriptiona 99.6 1.3E-14 4.6E-19 127.9 12.6 197 22-260 38-262 (267)
23 3efb_A Probable SOR-operon reg 99.3 8E-12 2.7E-16 110.0 11.5 198 20-259 44-264 (266)
24 3kv1_A Transcriptional repress 99.3 2.4E-12 8.3E-17 113.4 7.0 199 20-260 39-260 (267)
25 1t35_A Hypothetical protein YV 68.1 6.1 0.00021 32.2 4.6 46 37-83 93-139 (191)
26 1wxi_A NH(3)-dependent NAD(+) 48.4 16 0.00056 31.2 4.1 30 18-51 18-50 (275)
27 1sur_A PAPS reductase; assimil 42.5 31 0.0011 27.8 4.8 66 31-107 33-99 (215)
28 1wy5_A TILS, hypothetical UPF0 41.6 38 0.0013 29.3 5.5 45 38-83 21-65 (317)
29 1wek_A Hypothetical protein TT 41.5 22 0.00075 29.4 3.7 46 37-83 127-173 (217)
30 2dpl_A GMP synthetase, GMP syn 41.0 46 0.0016 28.8 5.9 69 29-107 9-77 (308)
31 2oq2_A Phosphoadenosine phosph 40.3 29 0.00099 29.2 4.4 50 31-83 31-80 (261)
32 3qua_A Putative uncharacterize 38.4 15 0.00052 30.1 2.2 79 39-125 115-194 (199)
33 1kqp_A NAD+ synthase, NH(3)-de 38.2 24 0.00083 30.0 3.6 30 18-51 17-48 (271)
34 3fiu_A NH(3)-dependent NAD(+) 36.9 31 0.001 29.0 4.0 32 18-53 8-41 (249)
35 1ydh_A AT5G11950; structural g 36.5 14 0.00047 30.7 1.6 46 37-83 101-147 (216)
36 3p52_A NH(3)-dependent NAD(+) 35.9 57 0.0019 27.3 5.5 56 18-82 5-62 (249)
37 1xng_A NH(3)-dependent NAD(+) 35.7 40 0.0014 28.4 4.5 57 19-82 5-61 (268)
38 3fe2_A Probable ATP-dependent 33.4 91 0.0031 25.1 6.4 65 11-83 104-186 (242)
39 3q4g_A NH(3)-dependent NAD(+) 31.9 35 0.0012 29.3 3.6 30 18-51 19-50 (279)
40 2o8v_A Phosphoadenosine phosph 31.2 55 0.0019 27.2 4.7 46 32-83 35-81 (252)
41 2a7y_A Hypothetical protein RV 28.7 43 0.0015 23.4 2.8 24 147-173 36-59 (83)
42 3dpi_A NAD+ synthetase; ssgcid 28.0 61 0.0021 27.9 4.5 30 18-51 25-56 (285)
43 3sbx_A Putative uncharacterize 27.8 21 0.00074 28.9 1.4 44 39-83 106-150 (189)
44 3ca8_A Protein YDCF; two domai 27.4 97 0.0033 26.2 5.6 46 88-133 94-139 (266)
45 3tqi_A GMP synthase [glutamine 24.9 3.5E+02 0.012 25.1 9.4 67 31-107 221-287 (527)
46 2e18_A NH(3)-dependent NAD(+) 24.9 63 0.0022 26.8 3.9 54 19-82 6-59 (257)
47 1gpm_A GMP synthetase, XMP ami 24.5 1.2E+02 0.0043 28.1 6.2 68 30-107 217-284 (525)
48 1q0u_A Bstdead; DEAD protein, 23.0 1.4E+02 0.0046 23.5 5.5 68 12-83 75-160 (219)
49 1q15_A CARA; CMPR, (2S,5S)-5-c 22.9 92 0.0031 28.9 4.9 75 17-100 214-288 (503)
50 3eno_A Putative O-sialoglycopr 21.0 78 0.0027 27.7 3.8 31 24-54 231-261 (334)
51 3iuy_A Probable ATP-dependent 20.7 2.4E+02 0.0082 22.1 6.6 63 12-83 97-177 (228)
52 2ywb_A GMP synthase [glutamine 20.6 1.9E+02 0.0066 26.6 6.7 48 32-86 201-248 (503)
53 3n05_A NH(3)-dependent NAD(+) 20.2 87 0.003 29.7 4.2 29 19-51 306-336 (590)
No 1
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.9e-67 Score=466.86 Aligned_cols=241 Identities=34% Similarity=0.521 Sum_probs=220.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCC
Q 024509 9 DRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNH 88 (266)
Q Consensus 9 ~~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~ 88 (266)
+.|++++|+|++++++++|++|++.+++++++++.++|+||||+||..+|+.|.... .++||++|++|++||||||++|
T Consensus 22 ~~m~i~v~~~~~~l~~~~A~~i~~~i~~ai~~~~~~~l~LsgGstP~~~y~~L~~~~-~~idw~~v~~f~~DEr~vp~~~ 100 (268)
T 3ico_A 22 MSSSIEIFPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLSAQA-QQIEWSKVHLFWGDERYVPEDD 100 (268)
T ss_dssp --CEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSHHHHHHHHHHHHHG-GGSCGGGEEEEESEEECSCTTC
T ss_pred cccceEecCCcchhhhhhcchhhhHhHHHHHhcCceEEEEecCCchhHHHHHHHHHh-hhhhheeeEEeecccccCCCCc
Confidence 679999999999999999999999999999999999999999999999997665422 5799999999999999999999
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCeEeCCCC-----CCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCc
Q 024509 89 SDSNYKLAKEGLLSKVPIVPSHVHSINDS-----LSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGH 163 (266)
Q Consensus 89 ~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~-----~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH 163 (266)
++||+++++++||++++++++|+|++++. .|++++|++|++.|++.++.+ ++.|+||++|||||+|||
T Consensus 101 ~~Sn~~~~~~~Ll~~v~i~~~~i~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~~-------~~~p~~Dl~lLGmG~DGH 173 (268)
T 3ico_A 101 DERNLKQARRALLNHVDIPSNQVHPMAASDGDFGGDLDAAALAYEQVLAASAAPG-------DPAPNFDVHLLGMGPEGH 173 (268)
T ss_dssp TTCHHHHHHHHTGGGSCCCGGGBCCCCCTTSTTTTCHHHHHHHHHHHHHHHSSTT-------CSSCCCSEEEECCCTTCC
T ss_pred chhHHHHHHHHHHhccCCcccccccccccCCCcccchhHHHHHHHHHHhhccCCC-------CCCCCcceEEeccCCccc
Confidence 99999999999999999999999999875 589999999999999875422 134789999999999999
Q ss_pred eeccCCCCCccccccceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCccccccccccc
Q 024509 164 VASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPT 243 (266)
Q Consensus 164 iAslfP~~~~~~~~~~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~ 243 (266)
|||||||++.+.+++++++.+.+++++|++|||||+++|++||+|+|+++|++|+++++++++++. +.++|+|+|+ .
T Consensus 174 ~as~fPg~~~~~~t~~~vv~~~~~~~~P~~rITlt~~~I~~Ar~i~ll~~G~~Ka~av~~~l~g~~--~~~~Pas~l~-~ 250 (268)
T 3ico_A 174 INSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPGKADAVAAAIGGAD--PVSVPAAGAV-G 250 (268)
T ss_dssp BTTBCTTCHHHHCSSCSEEEESCCSSSSSCEEEECHHHHTTSSEEEEEECSGGGHHHHHHHHTTCC--TTTSGGGGCC-C
T ss_pred ccccCCCChhhhhhceEEEEecCCCCCCCceEEEechhhhccceEEEEecCCCchHHHHHHhcCCC--Cccccccccc-c
Confidence 999999999887777777778788899999999999999999999999999999999999999876 7899999999 6
Q ss_pred CCeEEEEecHHHHhccc
Q 024509 244 NGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 244 ~~~~~~~~D~~Aa~~l~ 260 (266)
|++++||+|++||++|.
T Consensus 251 h~~~~~~lD~~Aa~~L~ 267 (268)
T 3ico_A 251 RQNTLWLLDRDAAAKLP 267 (268)
T ss_dssp SSEEEEEEEHHHHTTCC
T ss_pred ccceEEEecchhhhhCC
Confidence 99999999999999885
No 2
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=100.00 E-value=2.6e-67 Score=462.35 Aligned_cols=241 Identities=35% Similarity=0.531 Sum_probs=220.7
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCC
Q 024509 9 DRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNH 88 (266)
Q Consensus 9 ~~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~ 88 (266)
+.+++++|+|++++++++|++|++.+++++++++.++|+||||+||..+|+.|.... .++||++|++|++||||||++|
T Consensus 6 ~~~~i~i~~~~~~l~~~~A~~i~~~i~~a~~~~~~~~l~LsgGstP~~~y~~L~~~~-~~idw~~v~~f~~DEr~vp~~~ 84 (251)
T 3tx2_A 6 SETIIEKYADTDALVTAAGDRLASAITGALAERGKAMIVLTGGGTGIALLKHLRDVA-SGLDWTNVHVFWGDDRYVPKTD 84 (251)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSHHHHHHHHHHHHHH-TTSCGGGEEEEESEEESSCTTC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhc-cCCCCceeEEEeeeeccCCCCC
Confidence 557899999999999999999999999999999999999999999999997665422 5799999999999999999999
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCeEeCCCC-----CCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCc
Q 024509 89 SDSNYKLAKEGLLSKVPIVPSHVHSINDS-----LSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGH 163 (266)
Q Consensus 89 ~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~-----~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH 163 (266)
++||+++++++||++++++++|+|++++. .|++++|++|+++|++.++.. ++.|+||++|||||+|||
T Consensus 85 ~~Sn~~~~~~~ll~~v~i~~~~i~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~~-------~~~~~~Dl~lLG~G~DGH 157 (251)
T 3tx2_A 85 PERNAWQAWEALLEHVNFPLRNMHAMPNSESEYGTDLDAAALAYEQLLAANAEPG-------QDCPAFDVHLLGMGGEGH 157 (251)
T ss_dssp TTCHHHHHHHHTGGGSCCCGGGBCCCCCTTSSCTTCHHHHHHHHHHHHHHTSCTT-------CSSCCCSEEEECCCTTCC
T ss_pred hHHHHHHHHHHhhccCCCCHHHEEECCCcccccCCCHHHHHHHHHHHHHhhhccc-------cCCCCCCEEEECCCCCCc
Confidence 99999999999999999999999999875 489999999999999865432 125789999999999999
Q ss_pred eeccCCCCCccccccceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCccccccccccc
Q 024509 164 VASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPT 243 (266)
Q Consensus 164 iAslfP~~~~~~~~~~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~ 243 (266)
|||||||++.+.++.++++.+.+++++|++|||||+++|++||+|+|+++|++|+++++++++++. +.++|+|+|+ .
T Consensus 158 ~as~fPg~~~~~~~~~~vv~~~~~~~~P~~riTlt~~~I~~Ar~i~ll~~G~~Ka~av~~~l~g~~--~~~~Pas~l~-~ 234 (251)
T 3tx2_A 158 INSLFPHTDAVKETQRLVVAVPDSPKPPPQRITLTLPAIQRSREVWLVVSGEAKADAVAAAVGGAD--PVDVPAAGAK-G 234 (251)
T ss_dssp BTTBCTTCHHHHCSSCSEEEESCCSSSSSCEEEECHHHHTTSSEEEEEECSGGGHHHHHHHHTTCC--TTTSGGGGCC-C
T ss_pred eEEcCCcChhhccCcceEEEecCCCCCCCcEEEECHHHHHhcCeEEEEEeCHHHHHHHHHHHhCCC--CCCCChHHhc-c
Confidence 999999999887776778778888999999999999999999999999999999999999999876 7899999999 6
Q ss_pred CCeEEEEecHHHHhccc
Q 024509 244 NGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 244 ~~~~~~~~D~~Aa~~l~ 260 (266)
|++++||+|++||++|.
T Consensus 235 h~~~~~~~D~~Aa~~L~ 251 (251)
T 3tx2_A 235 IERTVWLLDEAAASQLG 251 (251)
T ss_dssp SSEEEEEEETTTTTTCC
T ss_pred CCCEEEEEeHHHHhhcC
Confidence 89999999999999873
No 3
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=100.00 E-value=3e-67 Score=461.26 Aligned_cols=238 Identities=36% Similarity=0.563 Sum_probs=220.0
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCC
Q 024509 9 DRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNH 88 (266)
Q Consensus 9 ~~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~ 88 (266)
..+++++|+|++++++++|++|++.++++++++++++|+||||+||..+|+.|.... .++||++|++|++||||||++|
T Consensus 6 ~~~~i~i~~~~~~l~~~~A~~i~~~i~~~~~~~~~~~l~LsgGstP~~~y~~L~~~~-~~idw~~v~~f~~DEr~vp~~~ 84 (248)
T 3oc6_A 6 SDTVIERHADTAALVAAAGDRLVDAISSAIGERGQATIVLTGGGTGIGLLKRVRERS-GEIDWSKVHIYWGDERFVPQDD 84 (248)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSHHHHHHHHHHHHTG-GGSCGGGEEEEESEEECSCTTC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHhhc-cCCCcceEEEEEeeeccCCCCC
Confidence 678999999999999999999999999999999999999999999999997665422 5799999999999999999999
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCeEeCCCC-----CCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCc
Q 024509 89 SDSNYKLAKEGLLSKVPIVPSHVHSINDS-----LSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGH 163 (266)
Q Consensus 89 ~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~-----~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH 163 (266)
++||+++++++||++++++++|+|++++. .|++++|++|++.|++.++. ..|+||++|||||+|||
T Consensus 85 ~~Sn~~~~~~~ll~~v~i~~~~i~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~---------~~~~~Dl~lLG~G~dGH 155 (248)
T 3oc6_A 85 DERNDKQAREALLDHIGIPPVNVHAMAASDGEFGDDLEAAAAGYAQLLSANFDS---------SVPGFDVHLLGMGGEGH 155 (248)
T ss_dssp TTCHHHHHHHHTGGGSCCCGGGBCCCCCTTSTTTTCHHHHHHHHHHHHHHHHTS---------SSCSEEEEEECCCTTCC
T ss_pred hHHHHHHHHHHhhccCCCChhhEEecCCcccccCCCHHHHHHHHHHHHHHhccc---------CCCCCCEEEECCCCCCC
Confidence 99999999999999999999999999875 48999999999999986641 25789999999999999
Q ss_pred eeccCCCCCccccccceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCccccccccccc
Q 024509 164 VASLFPNHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPT 243 (266)
Q Consensus 164 iAslfP~~~~~~~~~~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~ 243 (266)
|||||||++.+.++.++++.+.+++++|++|||||+++|++||+|+|+++|++|+++++++++++. +.++|+|+|+ .
T Consensus 156 ~aslfPg~~~~~~~~~~vv~~~~~~~~P~~riTlt~~~I~~Ar~i~ll~~G~~Ka~av~~~l~g~~--~~~~Pas~l~-~ 232 (248)
T 3oc6_A 156 VNSLFPDTDAVRETERLVVGVSDSPKPPPRRITLTLPAVQNSREVWLVVSGEAKADAVAAAVGGAD--PVDIPAAGAV-G 232 (248)
T ss_dssp BTTBCTTCHHHHCSSCSEEEESCCSSSSSCEEEECHHHHTTEEEEEEEECSGGGHHHHHHHHHTCC--TTTSGGGGCC-C
T ss_pred EEEcCCCChhhccCcceEEEecCCCCCCCcEEEcCHHHHHhhCeEEEEEeCHHHHHHHHHHHcCCC--CCCCChHHhc-c
Confidence 999999999887776778778888899999999999999999999999999999999999999876 7899999999 6
Q ss_pred CCeEEEEecHHHHhcc
Q 024509 244 NGKLVWFLDKPAASKL 259 (266)
Q Consensus 244 ~~~~~~~~D~~Aa~~l 259 (266)
|++++||+|++||++|
T Consensus 233 h~~~~~~~D~~Aa~~L 248 (248)
T 3oc6_A 233 RERTVWLVDEAAAAKL 248 (248)
T ss_dssp SSEEEEEEETTTTTTC
T ss_pred CCCEEEEEchHHhhCC
Confidence 8999999999999875
No 4
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=100.00 E-value=1.2e-64 Score=448.91 Aligned_cols=248 Identities=29% Similarity=0.375 Sum_probs=213.1
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCC-CcceEEecceeecCCC
Q 024509 9 DRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDW-AKWYIFWADERVVAKN 87 (266)
Q Consensus 9 ~~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w-~~v~~f~~DEr~vp~~ 87 (266)
+..++++|+|++++++++|++|++.+++++++++.++|+||||+||..+|+.|.......+|| ++|++||+||||||++
T Consensus 3 ~~~~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~LsgGstP~~ly~~L~~~~~~~idw~~~v~~f~~DEr~vp~~ 82 (266)
T 3eb9_A 3 FKPTISVHATPQELSAAGCRKIVEIIEASGSQQWPLSIALAGGSTPKMTYARLHDEHLNLLREKRALRFFMGDERMVPAD 82 (266)
T ss_dssp CCCEEEEESSHHHHHHHHHHHHHHHHHHHCGGGCSEEEEECCSHHHHHHHHHHHHHHHHHHTTSCCEEEEESEEESSCTT
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHHHhhcCCChHHcEEEEeeeeeccCCC
Confidence 357899999999999999999999999999999999999999999999998665322247999 9999999999999999
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCeEeCCCC-CCH---------HHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEec
Q 024509 88 HSDSNYKLAKEGLLSKVPIVPSHVHSINDS-LSA---------EEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLG 157 (266)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~-~d~---------~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG 157 (266)
|++||+++++++||+ ++|++|+|++++. .++ +++|++|++.|+++++....+ ......|+||++|||
T Consensus 83 ~~~Sn~~~~~~~ll~--~i~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~Ye~~i~~~~~~~~~~-g~~~~~p~~Dl~lLG 159 (266)
T 3eb9_A 83 STDSNYNMAREVLLH--DIPDDLVFPFDTSAVTPSAEATSADAMRVAEAYGKQLASLLPLKSVG-EAGPKVPVFDVVLLG 159 (266)
T ss_dssp STTCHHHHHHHHTGG--GSCGGGEECCCCTTCCTTSCCCHHHHHHHHHHHHHHHHHHSCEEETT-TTSCEEECCSEEEEC
T ss_pred ChHHHHHHHHHHhhc--CCCHHHEEeCCCccCChhhccccCcHHHHHHHHHHHHHHhccccccc-cccccCCCCCEEEEc
Confidence 999999999999999 8899999999987 478 999999999999875211000 000002479999999
Q ss_pred cCCCCceeccCCCCCccccc--cceEEeecCCC--CCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCc
Q 024509 158 MGSDGHVASLFPNHSVLDVK--NQWVSFITDSP--KPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCP 233 (266)
Q Consensus 158 ~G~DGHiAslfP~~~~~~~~--~~~v~~~~~~~--~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~ 233 (266)
||+||||||||||++.+.+. +++|....++| ++|++|||||+++|++||+|+|+++|++|+++++++++++. +.
T Consensus 160 mG~DGH~as~fPg~~~l~~~~~~~~v~~~~~~~~~~~P~~rITlt~~~I~~A~~i~ll~~G~~Ka~av~~~l~g~~--~~ 237 (266)
T 3eb9_A 160 LGSDGHTASIFPGSQAEKETDGKVVVSVGFPSETMKPKVWRVTLSPATIMQARNVIVLATGAEKKWVVDGILADTA--HK 237 (266)
T ss_dssp CCTTSCBTTBCTTCSGGGCCSSSCSEEEECCCTTCSSCSCEEEECHHHHHTCSEEEEEECCGGGHHHHHHHHCSSC--SS
T ss_pred cCCCCCeeecCCCCcccccCCCccEEEecCCCcccCCCCeEEEcCHHHHHhcCeEEEEEeCHHHHHHHHHHHhCCC--Cc
Confidence 99999999999999987765 67776443367 89999999999999999999999999999999999999987 67
Q ss_pred ccccccccccCCeEEEEecHHHHhcccc
Q 024509 234 SLPARMAQPTNGKLVWFLDKPAASKLQS 261 (266)
Q Consensus 234 ~~Pas~l~~~~~~~~~~~D~~Aa~~l~~ 261 (266)
.+|||+|+..|++++||+|++||++|++
T Consensus 238 ~~pAs~l~~~h~~~~~~~D~~Aa~~L~~ 265 (266)
T 3eb9_A 238 APVARFLRGCEGNVSFLLDKEIAENLAK 265 (266)
T ss_dssp CCGGGGGGGCSSEEEEEEEHHHHC----
T ss_pred cchhHHhcCCCCCEEEEEcHHHhccccc
Confidence 8999999955999999999999999864
No 5
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=100.00 E-value=2.8e-63 Score=444.40 Aligned_cols=238 Identities=23% Similarity=0.267 Sum_probs=212.4
Q ss_pred CCCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEEcCCChHHHHHHHhc-ccCCCCCCCCcceEEecceee
Q 024509 6 VHRDRGELRIHESVEELSTNLADYIADLSEASVKE-RGVFAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 6 ~~~~~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~-~~~~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr~ 83 (266)
+..+.|++++|+|++++++++|++|++.+++++.+ ++.++|+||||+||..+|+.|. .++..++||++|++|++||||
T Consensus 17 ~~~~~M~i~i~~~~~~la~~aA~~i~~~i~~a~~~~~~~~~l~LsgGsTP~~~y~~L~~~~~~~~idw~~v~~f~~DEr~ 96 (289)
T 3hn6_A 17 QGPGSMRLIIRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNLIELNKNKKISFQNVITFNMDEYI 96 (289)
T ss_dssp --CCSCEEEEESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESEEES
T ss_pred cCCCceEEEEECCHHHHHHHHHHHHHHHHHHHhhccCCcEEEEECCCccHHHHHHHHHHhHhhcCCCchheEEEeCccee
Confidence 34577999999999999999999999999988865 4579999999999999997554 344467999999999999999
Q ss_pred -cCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCC-CCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCC
Q 024509 84 -VAKNHSDSNYKLAKEGLLSKVPIVPSHVHSINDS-LSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSD 161 (266)
Q Consensus 84 -vp~~~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~-~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~D 161 (266)
||++|++||+++++++||++++++++|+|++++. .|++++|++|++.|++ .++||++|||||+|
T Consensus 97 gvp~~~~~Sn~~~~~~~Ll~~v~i~~~~i~~~~~~~~d~~~~a~~Ye~~i~~--------------~~~~Dl~lLGmG~D 162 (289)
T 3hn6_A 97 GIEENHPESYHSFMWNNFFSHIDIKKENINILNGNASNLKKECEEYEKKIKS--------------FGGIMLFVGGIGPD 162 (289)
T ss_dssp SCCTTSTTSHHHHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHH--------------TTSCSEEEEECCTT
T ss_pred cCCCCcHHHHHHHHHHHhhccCCCCHHHeecCCCCCCCHHHHHHHHHHHHhh--------------cCCCCEEEEccCCC
Confidence 9999999999999999999999999999999986 5999999999999997 36899999999999
Q ss_pred CceeccCCCCCccccccceEEee------------cCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCC
Q 024509 162 GHVASLFPNHSVLDVKNQWVSFI------------TDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLG 229 (266)
Q Consensus 162 GHiAslfP~~~~~~~~~~~v~~~------------~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~ 229 (266)
|||||||||++ +.+.++++... .+.+++|++|||||+++|++||+|+|+++|++|+++++++++++.
T Consensus 163 GH~asnfPg~~-l~~~t~~v~l~~~t~~~n~~~f~~~~~~~P~~rITl~l~~I~~Ar~i~lla~G~~Ka~av~~~l~g~~ 241 (289)
T 3hn6_A 163 GHIAFNEPGSS-LTSRTRIKTLTQDTIIANSRFFEGDVNKVPKNALTVGIGTIMDSQEVLIIVNGHNKARALKHAIEKGV 241 (289)
T ss_dssp SCBTTBCTTCC-TTCCSEEEECCHHHHHHHGGGTTTCTTTSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHTSCC
T ss_pred CceeecCCCCc-ccccceEEeccHHHHHHhhhhccCCCCCCCCeEEECCHHHHHccCeEEEEEcChHHHHHHHHHHhCCC
Confidence 99999999986 44445554321 256889999999999999999999999999999999999999987
Q ss_pred CCCcccccccccccCCeEEEEecHHHHhcccc
Q 024509 230 PNCPSLPARMAQPTNGKLVWFLDKPAASKLQS 261 (266)
Q Consensus 230 ~~~~~~Pas~l~~~~~~~~~~~D~~Aa~~l~~ 261 (266)
+.++|+|.|+ .|++++||+|++||++|+.
T Consensus 242 --~~~~Pas~l~-~h~~~~~~lD~~Aa~~L~~ 270 (289)
T 3hn6_A 242 --NHMWTISALQ-LHKNAIIVSDKNATYELKV 270 (289)
T ss_dssp --CTTSGGGGGG-GCSSEEEEEESGGGTTSBH
T ss_pred --CcccChHHHc-cCCCEEEEEcHHHHccccH
Confidence 6799999999 6999999999999999864
No 6
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=100.00 E-value=3e-62 Score=434.00 Aligned_cols=248 Identities=25% Similarity=0.348 Sum_probs=216.6
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCC
Q 024509 8 RDRGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKN 87 (266)
Q Consensus 8 ~~~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~ 87 (266)
.+.|++++|+|++++++++|++|.+.+++++++++.++|+|+||+||..+|+.|...+...++|++|++||+||||||++
T Consensus 3 ~~~~~~~~~~~~~~l~~~aA~~i~~~i~~a~~~~~~~~l~LsgGstp~~ly~~L~~~~~~~i~w~~v~~f~~DEr~vp~~ 82 (267)
T 3css_A 3 SFAPTVKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGSTPKRLYEELHEKDLALLQQHAVQFILGDERLLSED 82 (267)
T ss_dssp -CCCEEEECSSHHHHHHHHHHHHHHHHHTCSSTTSCEEEEECCSSTTHHHHHHHHHHSHHHHHTTCEEEEESEEESSCTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHHHHhcccCCChhHeEEEeeeeeccCCC
Confidence 46799999999999999999999999999999999999999999999999986653233469999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCeEeCCCCC------------CHH-HHHHHHHHHHHHhhhhccccccCCCCCCceeEE
Q 024509 88 HSDSNYKLAKEGLLSKVPIVPSHVHSINDSL------------SAE-EAADEYEFDIRQLVKTRMVCVSDISDCPKFDLI 154 (266)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~~------------d~~-~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~ 154 (266)
|++||+++++++||++++ ++|+|++++.. +++ ++|++|++.|++.++.+.. ....++.|+||++
T Consensus 83 ~~~Sn~~~~~~~ll~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~e~~~a~~Ye~~l~~~~~~~~~-~~~~~~~p~~Dl~ 159 (267)
T 3css_A 83 DEQSNFSMATKALLRDVP--SSDVISIDRRAALATSKDEKGGLDGAWAVAQDYEVKLLNCLPCKQI-NGTAKSVPVVDIV 159 (267)
T ss_dssp STTSHHHHHHHHTGGGSC--GGGBCCCCCHHHHTTTTCTTTTHHHHHHHHHHHHHHHHHHSCEEEC-TTSSCEEECCSEE
T ss_pred CHHHHHHHHHHHHhccCC--HHHEEeCCCchhccccccccccCChhHHHHHHHHHHHHHhcCcccc-ccccCCCCCCCEE
Confidence 999999999999999998 67999998765 788 9999999999986420000 0000013579999
Q ss_pred EeccCCCCceeccCCCCCccccccceEE-ee-cCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCC
Q 024509 155 LLGMGSDGHVASLFPNHSVLDVKNQWVS-FI-TDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNC 232 (266)
Q Consensus 155 lLG~G~DGHiAslfP~~~~~~~~~~~v~-~~-~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~ 232 (266)
|||||+||||||||||++.+.+.+++|. .+ .+++++|++|||||+++|++||+|+|+++|++|++++++++++++ +
T Consensus 160 lLGiG~dGH~aslfP~~~~L~~~~~~v~~~~~~~~~~~p~~rITltl~~I~~A~~v~~la~G~~Ka~av~~~l~g~~--~ 237 (267)
T 3css_A 160 LLGFGSDGHTASIFPDSVAATDEEHVVSVSFPSPTMSPKVWRVTLSKTVIQYAKHVVVLAAGKDKNWVVRGVLSESP--T 237 (267)
T ss_dssp EEECCTTSCBTTBCTTSGGGGCCSCSEEEECCCTTCSSCSCEEEECHHHHHHCSEEEEEECSGGGHHHHHHHHCSSC--C
T ss_pred EECCCCCccceeCCCCCcccCCCCcEEEeecccCCCCCCCceEECCHHHHHcCCEEEEEEeCHHHHHHHHHHHcCCC--C
Confidence 9999999999999999998877778877 66 677889999999999999999999999999999999999999876 6
Q ss_pred ccccccccc-ccCCeEEEEecHHHHhccc
Q 024509 233 PSLPARMAQ-PTNGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 233 ~~~Pas~l~-~~~~~~~~~~D~~Aa~~l~ 260 (266)
.++|+|+|+ ..|++++||+|++||++|.
T Consensus 238 ~~~Pas~l~~~~h~~~~~~~D~~Aa~~l~ 266 (267)
T 3css_A 238 DPLPVSRFLRDCRGSVTLLLDPGAGEGVC 266 (267)
T ss_dssp SSCCGGGGGGGCSSEEEEEECTTTTTTTC
T ss_pred CcCCHHHhccCCCCCEEEEECHHHHhhcc
Confidence 789999999 6689999999999999874
No 7
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=100.00 E-value=2.5e-61 Score=417.95 Aligned_cols=218 Identities=28% Similarity=0.404 Sum_probs=196.4
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChh
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSD 90 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~ 90 (266)
|+ ++|+|++++++++|+.|++.++++++++++++|+||||+||..+|+.|.. ..+||++|++|++||||||++|++
T Consensus 3 m~-~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~LsgGstp~~~y~~L~~---~~idw~~v~~f~~DEr~vp~~~~~ 78 (226)
T 3lwd_A 3 MN-TTQEGRQRLAERLADTVAQALEADLAKRERALLVVSGGSTPKPFFTSLAA---KALPWARVDVTLADERWVTADDAD 78 (226)
T ss_dssp -C-HHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEEEECCSSTTHHHHHHHHT---SCSCGGGEEEEESEEESSCTTSTT
T ss_pred Cc-eecCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHh---cCCCchhEEEEEeeecccCCCChH
Confidence 67 89999999999999999999999999999999999999999999987765 579999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCCCCCeEeCCCC-CCHHHHHHHHHHHHHHhhhhccccccCCCCCC-ceeEEEeccCCCCceeccC
Q 024509 91 SNYKLAKEGLLSKVPIVPSHVHSINDS-LSAEEAADEYEFDIRQLVKTRMVCVSDISDCP-KFDLILLGMGSDGHVASLF 168 (266)
Q Consensus 91 Sn~~~l~~~ll~~~~i~~~~v~~~~~~-~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~-~~Dl~lLG~G~DGHiAslf 168 (266)
||+++++++||++ .++++|+|++++. .|++++|++|++.|++ .| +||++|||||+||||||||
T Consensus 79 Sn~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~ye~~i~~--------------~~~~~Dl~lLG~G~dGH~as~f 143 (226)
T 3lwd_A 79 SNARLVRETLLVG-PAAEACFHPLTTDDDTPEAGVETVAERLES--------------LPWPASAVILGMGGDGHTASLF 143 (226)
T ss_dssp CHHHHHHHHTSSG-GGGGSEEECSCCSSSSHHHHHHHHHHHHHT--------------SCSSBSEEEECCCTTSCBTTBC
T ss_pred HHHHHHHHHhcCC-CCcHHhEecCCCCcCCHHHHHHHHHHHHHh--------------cCCCCCEEEECcCCCCCeeecC
Confidence 9999999999999 7889999998876 5999999999999986 34 8999999999999999999
Q ss_pred CCCCcccc---ccceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccccccccccCC
Q 024509 169 PNHSVLDV---KNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNG 245 (266)
Q Consensus 169 P~~~~~~~---~~~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~~~ 245 (266)
||++.+++ ...++..+ +.+++|++|||||+++|++||+|+|+++|++|++++++++++++ +.++|+|+|+....
T Consensus 144 Pg~~~L~~~~~~~~~~~~~-~~~~~P~~riTlt~~~I~~A~~i~ll~~G~~Ka~av~~~l~g~~--~~~~Pas~l~~h~~ 220 (226)
T 3lwd_A 144 PDSEQLATALETTSAAVVV-HAPSVPQARITLSASRLADAGLHVLHITGNDKRRVLAEALAGDD--VRQLPIRAFLSQPI 220 (226)
T ss_dssp TTCTTHHHHHHCCSSEEEE-CCTTSSSCEEEECHHHHTCBSCEEEEEESHHHHHHHHHHHHCCC--TTTSTTHHHHTSCC
T ss_pred CCChhhhhhhccCCeEEec-CCCCCCCcEEEcCHHHHHhhCeEEEEEECHHHHHHHHHHHcCCC--CCcCChHHHhcCCC
Confidence 99987753 33444433 57889999999999999999999999999999999999999876 78999999995445
Q ss_pred eEEEE
Q 024509 246 KLVWF 250 (266)
Q Consensus 246 ~~~~~ 250 (266)
+++|.
T Consensus 221 ~v~w~ 225 (226)
T 3lwd_A 221 ATYWA 225 (226)
T ss_dssp EEEEE
T ss_pred eEEeC
Confidence 77774
No 8
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=100.00 E-value=4.5e-60 Score=413.50 Aligned_cols=235 Identities=30% Similarity=0.492 Sum_probs=207.6
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhccc-CCCCCCCCcceEEecceeecCCCCh
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAP-YNKTVDWAKWYIFWADERVVAKNHS 89 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~-~~~~i~w~~v~~f~~DEr~vp~~~~ 89 (266)
|++++|+|++++++++|++|.+.+ ++++.++|+|+||+||..+|+.|... +..+++|++|++|++|||+||.+|+
T Consensus 2 m~~~~~~~~~~l~~~aA~~i~~~i----~~~~~~~l~lsgGstp~~~~~~L~~~~~~~~~~w~~v~~f~~DEr~vp~~~~ 77 (238)
T 1y89_A 2 INHKIFPTADAVVKSLADDMLAYS----QQGQPVHISLSGGSTPKMLFKLLASQPYANDIQWKNLHFWWGDERCVAPDDA 77 (238)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHH----TTSSCEEEEECCSHHHHHHHHHHTSTTHHHHSCGGGEEEEESEEESSCTTST
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHH----HhCCCEEEEECCCccHHHHHHHHHhhhhccCCChhHeEEEeceecCCCCCCH
Confidence 799999999999999999998754 44889999999999999999877542 1234999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccCC
Q 024509 90 DSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFP 169 (266)
Q Consensus 90 ~Sn~~~l~~~ll~~~~i~~~~v~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP 169 (266)
+||+++++++||++++++++|+|++++..+++++|++|++.|++.++.. ++.++||++|||||+|||||||||
T Consensus 78 ~Sn~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~y~~~l~~~~~~~-------~~~~~~Dl~lLGiG~dGH~aslfP 150 (238)
T 1y89_A 78 ESNYGEANALLFSKINMPAQNIHRILGENEPQAEAERFAQAMAHVIPTE-------NGTPVFDWILLGVGADGHTASLFP 150 (238)
T ss_dssp TCHHHHHHHHTGGGSCCCGGGBCCCCTTSCHHHHHHHHHHHHHHHSCEE-------TTEECCSEEEECCCTTSCBTTBCT
T ss_pred HHHHHHHHHHhhccCCCCHHHEEeCCCCCCHHHHHHHHHHHHHHhhccc-------CCCCCCCEEEECCCCCCceeecCC
Confidence 9999999999999999999999999987899999999999999864311 012479999999999999999999
Q ss_pred CCCccccccceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCC-CCCCcccccccccccCCeEE
Q 024509 170 NHSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDL-GPNCPSLPARMAQPTNGKLV 248 (266)
Q Consensus 170 ~~~~~~~~~~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~-~~~~~~~Pas~l~~~~~~~~ 248 (266)
|+ +.++++++..+.+.+++|.+|||||++.|++||+|+++++|++|+++++++++++ + +.++|+|+|+..|++++
T Consensus 151 ~~--l~~~~~~v~~~~~~~~~p~~rITltl~~i~~a~~vi~~a~G~~Ka~ai~~~l~~~~~--~~~~Pas~l~~~~~~~~ 226 (238)
T 1y89_A 151 GQ--TDYADANLSVVASHPESGQLRVSKTAKVLQAAKRISYLVLGAGKAEIVEQIHTTPAE--QLPYPAAKIHSTSGVTE 226 (238)
T ss_dssp TT--CCTTCCSSEEEEECTTTCCEEEEECHHHHHHSSEEEEEECSGGGHHHHHHHHHSCGG--GCCCHHHHCCCSSSEEE
T ss_pred CC--CCCCCcEEEeccCCCCCCCCeEECCHHHHHhCCEEEEEEeCHHHHHHHHHHHhCCCC--CccCCHHHHhcCCCCEE
Confidence 98 6666677766656677899999999999999999999999999999999999985 4 67899999995489999
Q ss_pred EEecHHHHhccc
Q 024509 249 WFLDKPAASKLQ 260 (266)
Q Consensus 249 ~~~D~~Aa~~l~ 260 (266)
||+|++||++|.
T Consensus 227 ~~~D~~Aa~~l~ 238 (238)
T 1y89_A 227 WYLDSDAAAKIA 238 (238)
T ss_dssp EEEEHHHHTTTC
T ss_pred EEEChHHHhhcC
Confidence 999999999763
No 9
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=100.00 E-value=5.6e-60 Score=411.37 Aligned_cols=219 Identities=27% Similarity=0.423 Sum_probs=194.4
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCCh
Q 024509 10 RGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHS 89 (266)
Q Consensus 10 ~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~ 89 (266)
.|++++|+|.+++++++|++|++.++++++++++++|+||||+||..+|+.|.. ..+||++|++|++||||||++|+
T Consensus 5 ~m~~~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsgGstp~~~y~~L~~---~~idw~~v~~f~~DEr~vp~~~~ 81 (233)
T 3nwp_A 5 ETVFKSFDTPSALEQQLASKIASQLQEAVDARGKASLVVSGGSTPLKLFQLLSM---KSIDWSDVYITLADERWVEADAD 81 (233)
T ss_dssp CCCEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSSTTHHHHHHHHH---CCSCGGGEEEEESEEESSCTTST
T ss_pred eeEEEEECCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHh---cCCChhHeEEEeCeecccCCCCh
Confidence 489999999999999999999999999999999999999999999999987765 47999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCCCCeEeCCCC-CCHHHHHHHHHHHHHHhhhhccccccCCCCCC-ceeEEEeccCCCCceecc
Q 024509 90 DSNYKLAKEGLLSKVPIVPSHVHSINDS-LSAEEAADEYEFDIRQLVKTRMVCVSDISDCP-KFDLILLGMGSDGHVASL 167 (266)
Q Consensus 90 ~Sn~~~l~~~ll~~~~i~~~~v~~~~~~-~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~-~~Dl~lLG~G~DGHiAsl 167 (266)
+||+++++++||+++++ +++++++++. .|++++|++|++.|++ .| +||++|||||+|||||||
T Consensus 82 ~Sn~~~~~~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~ye~~i~~--------------~~~~~Dl~lLG~G~dGHias~ 146 (233)
T 3nwp_A 82 ASNERLVREHLLQNRAS-NAKFRGLKNMFSTAEAGADMAAESLSN--------------FPRPFDVVVLGMGNDGHTCSW 146 (233)
T ss_dssp TCHHHHHHHHTSSGGGG-GSEECCSCCSSSSHHHHHHHHHHHTTT--------------SCSSBSEEEECCCTTSCBTTB
T ss_pred HHHHHHHHHHhhccCCc-cceEEcCCCCCCCHHHHHHHHHHHHHh--------------cCCCCCEEEEccCCCCCeeec
Confidence 99999999999999864 5677876654 5999999999999975 45 899999999999999999
Q ss_pred CCCCCccccc---cceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccccccccccC
Q 024509 168 FPNHSVLDVK---NQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTN 244 (266)
Q Consensus 168 fP~~~~~~~~---~~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~~ 244 (266)
|||++.+.+. ..++..+ +.+++|++|||||+++|++||+|+|+++|++|++++++++++++ +.++|+|+|+ .|
T Consensus 147 fPg~~~L~~~~~~~~~~~~~-~~~~~P~~riTlt~~~I~~A~~i~ll~~G~~Ka~av~~~l~g~~--~~~~Pas~l~-~h 222 (233)
T 3nwp_A 147 FPCSAELENALTTQALCVAT-NPTTAPHGRITLSKSAILNSRQIYLHLVGEQKLSVYRQALESDD--VHAMPIRAVL-AQ 222 (233)
T ss_dssp CTTCTTHHHHHHCCSSEEEE-CCSSSSSCEEEECHHHHHSBSCEEEEEESHHHHHHHHHHHTCCC--TTTCTTHHHH-SC
T ss_pred CCCCchhhhhcccCceEEEC-CCCCCCCceEECCHHHHHhhCeEEEEEECHHHHHHHHHHHhCCC--CCCccHHHHH-hC
Confidence 9999865432 2245444 45788999999999999999999999999999999999999876 7899999999 55
Q ss_pred C----eEEEE
Q 024509 245 G----KLVWF 250 (266)
Q Consensus 245 ~----~~~~~ 250 (266)
+ +++|.
T Consensus 223 ~~~~~~v~w~ 232 (233)
T 3nwp_A 223 RKTPVDVFWS 232 (233)
T ss_dssp SSSCEEEEEE
T ss_pred CCCCcEEEeC
Confidence 4 46663
No 10
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.4e-59 Score=408.80 Aligned_cols=217 Identities=26% Similarity=0.378 Sum_probs=191.8
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChh
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSD 90 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~ 90 (266)
|++++|+|.+++++++|++|++.+++++++++.++|+||||+||..+|+.|.. .++||++|++|++||||||++|++
T Consensus 3 m~i~i~~~~~~l~~~~A~~i~~~i~~~i~~~~~~~l~lsgGstp~~~y~~L~~---~~i~w~~v~~f~~DEr~vp~~~~~ 79 (232)
T 3lhi_A 3 FVWHEYENAAEAAQSLADAVADALQGALDEKGGAVLAVSGGRSPIAFFNALSQ---KDLDWKNVGITLADERIVPTNHAD 79 (232)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSCEEEEECCSSTTHHHHHHHHT---SCCCGGGEEEEESEEESSCTTSTT
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHHHh---cCCCchheEEEEeeeccCCCCChH
Confidence 89999999999999999999999999999999999999999999999987765 479999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCCCCCeEeCC-CCCCHH--HHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceecc
Q 024509 91 SNYKLAKEGLLSKVPIVPSHVHSIN-DSLSAE--EAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASL 167 (266)
Q Consensus 91 Sn~~~l~~~ll~~~~i~~~~v~~~~-~~~d~~--~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAsl 167 (266)
||+++|+++||+++++ +++++++. ...|++ ++|++|++.|++ .|+||++|||||+|||||||
T Consensus 80 Sn~~~~~~~ll~~~~~-~~~~~p~~~~~~~~~~~~~~~~ye~~i~~--------------~~~~Dl~lLG~G~dGH~as~ 144 (232)
T 3lhi_A 80 SNTGLVREYLLKNKAA-AAVWIPMVEDGKTETELHPDAVVDYALKH--------------YKQPDVLILGMGNDGHTASI 144 (232)
T ss_dssp CHHHHHHHHTSSGGGG-GSEECCSSCTTCCGGGCCHHHHHHHHHHH--------------CCCCSEEEECCCTTSCBTTB
T ss_pred HHHHHHHHHhccCCCc-cceEecCCCCCCChhhHHHHHHHHHHHhh--------------CCCCCEEEEccCCCCCeeec
Confidence 9999999999999864 44556553 345888 999999999986 47899999999999999999
Q ss_pred CCCCCccccc-----cceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccccccccc
Q 024509 168 FPNHSVLDVK-----NQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQP 242 (266)
Q Consensus 168 fP~~~~~~~~-----~~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~ 242 (266)
|||++.+.+. ..++... +.+++|++|||||+++|++||+|+|+++|++|++++++++++ + +.++|+|+|+
T Consensus 145 fPg~~~l~~~~~~~~~~~~~~~-~~~~~P~~riTlt~~~I~~A~~i~ll~~G~~Ka~av~~~l~g-~--~~~~Pas~l~- 219 (232)
T 3lhi_A 145 FPKAPQFQTAIDGSAGVALVHT-TPVTAPHERISMTLDAIAHTGHVFLAIQGEEKKAVFDQAAQG-E--NREYPISLVL- 219 (232)
T ss_dssp CTTCTTHHHHHCCTTCCCEEEE-CCSSSSSCEEEECHHHHHTCSEEEEEEESHHHHHHHHHHHTS-C--CTTSTHHHHH-
T ss_pred CCCChhhhhhhccccCcEEEeC-CCCCCCCceEEecHHHHHhcCeEEEEEECHHHHHHHHHHHhC-C--CccCcHHHHH-
Confidence 9999877541 2234333 567889999999999999999999999999999999999997 4 6799999999
Q ss_pred cCC----eEEEE
Q 024509 243 TNG----KLVWF 250 (266)
Q Consensus 243 ~~~----~~~~~ 250 (266)
.|+ +++|.
T Consensus 220 ~h~~~~~~v~w~ 231 (232)
T 3lhi_A 220 NHQGVNCHVFYA 231 (232)
T ss_dssp TSTTCCEEEEEE
T ss_pred hCCCCCcEEEeC
Confidence 576 46663
No 11
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=100.00 E-value=1e-59 Score=423.42 Aligned_cols=236 Identities=25% Similarity=0.259 Sum_probs=206.9
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHHHHHHH--HHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeec
Q 024509 7 HRDRGELRIHESVEELSTNLADYIADLSEA--SVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVV 84 (266)
Q Consensus 7 ~~~~~~~~v~~~~~~l~~~~a~~i~~~i~~--~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~v 84 (266)
+...|++++++|++++++++|++|++.|++ .+++++.++|+||||+||..+|+.|...+..++||++|++|++|||+|
T Consensus 23 ~~~~Mkiii~~d~~~ls~~aA~~i~~~I~~~~~~~~~~~~~l~LsgGsTP~~ly~~L~~~~~~~idw~~V~~f~~DEr~v 102 (312)
T 3e15_A 23 HLHNVKYLEAKDLTDFNQKSAYYICHQIAEKQLSKEGGHVVIGLSGGKTPIDVYKNIALVKDIKIDTSKLIFFIIDERYK 102 (312)
T ss_dssp EETTEEEEEESSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEECCSHHHHHHHHHHTTCCSSCCCGGGCEEEESEEECC
T ss_pred CcCCeeEEEeCCHHHHHHHHHHHHHHHHHhhhhhhhCCCEEEEEeCCCCHHHHHHHHHHhhccCCCccceEEEEeeeecC
Confidence 457899999999999999999999999876 588899999999999999999987765555789999999999999999
Q ss_pred CCCChhhHHHHHHHHhcCCCCCCC-CCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCc
Q 024509 85 AKNHSDSNYKLAKEGLLSKVPIVP-SHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGH 163 (266)
Q Consensus 85 p~~~~~Sn~~~l~~~ll~~~~i~~-~~v~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGH 163 (266)
|.+|++||+++++ +||+++++++ +|+|.+++..|++++|++|++.|++.+.. .|+|||+|||||+|||
T Consensus 103 p~d~~~Sn~~~~~-~l~~~v~i~~~~~i~~~~g~~d~~~~a~~Ye~~I~~~~~~----------~g~~DL~LLGiG~DGH 171 (312)
T 3e15_A 103 RDDHKFSNYNNIK-FLFESLKINEKEQLYRPDTSKNIVECVRDYNEKIKNMVKK----------YTKVDIAILGMGSDFH 171 (312)
T ss_dssp TTCCTTCHHHHHH-HHHHHTTCCHHHHEECCCTTSCHHHHHHHHHHHHHHHHHH----------HCSCCEEEECCCTTSC
T ss_pred CCCChHHHHHHHH-HHHhcCCCCccccEEcCCCCcCHHHHHHHHHHHHHHHHhh----------cCCCcEEEEccCCCCc
Confidence 9999999999996 8999999997 79999999889999999999999865432 3789999999999999
Q ss_pred eeccCCCCCc------------cccccc-------------------eEEeecCCCCCCCCeEEeCHHHHhcccceEEEE
Q 024509 164 VASLFPNHSV------------LDVKNQ-------------------WVSFITDSPKPPPERITFTLPVINSASIVVVVV 212 (266)
Q Consensus 164 iAslfP~~~~------------~~~~~~-------------------~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~ 212 (266)
|||||||+++ +.+.++ +.....+.+.+|++|||||+++|++||+|+|++
T Consensus 172 iaslfPg~~~~~~~~~~~~t~~l~e~t~~~~~~~~s~~~~~~~~~~~~~~f~~~~~~pP~~rITlt~~~I~~Ak~v~~lv 251 (312)
T 3e15_A 172 IASLFPNIFFNIYMNNYQNSYIYDESSIKVANSNDTSDNDNLDLLKEYVYFTTTNNFDVRKRITVSLDLLGNASSKIFLL 251 (312)
T ss_dssp BTTBCSSHHHHHHHHHTGGGSSSCGGGCCCCC---CCHHHHHTTCCCSEEEEECCSTTCSEEEEECHHHHHTCSEEEEEE
T ss_pred eeecCCCCcccccccccccceeecHHHHHHhhcccccccccccccccceeeccCCCCCCCeEEEecHHHHhcCCeEEEEE
Confidence 9999999863 222221 233345667788999999999999999999999
Q ss_pred eCccHHHHHHHHHh-CCCCCCc---ccccccccccCCeEEEEecHHHH
Q 024509 213 TGESKAEAVHLAID-DLGPNCP---SLPARMAQPTNGKLVWFLDKPAA 256 (266)
Q Consensus 213 ~G~~K~~~l~~~l~-~~~~~~~---~~Pas~l~~~~~~~~~~~D~~Aa 256 (266)
+|++|+++|+++++ +++ +. .+|||+|| .|+++++++|..+.
T Consensus 252 ~G~~Ka~av~~~l~~g~v--t~~~~~~PAS~Lq-~Hp~~~vv~~~~~~ 296 (312)
T 3e15_A 252 NSTDKLDLWKNMLLKSYV--DVNYCLYPAVYLI-DSMNTTVVTCGYTN 296 (312)
T ss_dssp CSHHHHHHHHHHHHHTTT--TCCTTTCHHHHHH-HTSCEEEEEESCTT
T ss_pred cChHHHHHHHHHHHhCCC--CCCcCccchHHHh-hCCCEEEEEcCCcc
Confidence 99999999999999 775 45 89999999 89999999887754
No 12
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=100.00 E-value=2.2e-59 Score=407.39 Aligned_cols=217 Identities=29% Similarity=0.450 Sum_probs=200.6
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhh
Q 024509 12 ELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDS 91 (266)
Q Consensus 12 ~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~S 91 (266)
++++|+|++++++++|++|.+.+++++++++.++|+||||+||..+|+.|.. ..+||++|++|++||||||++|++|
T Consensus 15 ~~~~~~~~~~l~~~aA~~i~~~i~~~~~~~~~~~l~LsgGsTp~~ly~~L~~---~~i~w~~v~~f~~DEr~vp~~~~~S 91 (232)
T 1vl1_A 15 KTVIYLLEDGYVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVYEKLAE---QKFPWNRIHFFLSDERYVPLDSDQS 91 (232)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHHHHHHCSCEEEEECCSTTHHHHHHHHTT---SCCCGGGEEEEESEEESSCTTSTTC
T ss_pred eEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCCccHHHHHHHHHH---cCCChhHEEEEeCeEeecCCCChHH
Confidence 7889999999999999999999999999999999999999999999987765 3699999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccCC-C
Q 024509 92 NYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFP-N 170 (266)
Q Consensus 92 n~~~l~~~ll~~~~i~~~~v~~~~~~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP-~ 170 (266)
|+++++++||++++++++|+|++++..+++++|++|++.|++. .|+||++|||||+||||||||| |
T Consensus 92 n~~~~~~~l~~~v~i~~~~i~~~~~~~~~e~~~~~y~~~i~~~-------------~~~~Dl~lLGiG~dGH~aslfP~g 158 (232)
T 1vl1_A 92 NFRNINEVLFSRAKIPSGNVHYVDTSLPIEKACEKYEREIRSA-------------TDQFDLAILGMGPDGHVASIFDLE 158 (232)
T ss_dssp HHHHHHHHTTTTSCCCGGGEECCCTTSCHHHHHHHHHHHHHHH-------------CSSCSEEEECCCTTSCBTTBCSHH
T ss_pred HHHHHHHHHhccCCCCHHHEecCCCCCCHHHHHHHHHHHHHhc-------------CCCCCEEEEecCCCCchhhccCCC
Confidence 9999999999999999999999998889999999999999861 3689999999999999999999 9
Q ss_pred CCccccccceEEeecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccccccccccCCeEEEE
Q 024509 171 HSVLDVKNQWVSFITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPARMAQPTNGKLVWF 250 (266)
Q Consensus 171 ~~~~~~~~~~v~~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas~l~~~~~~~~~~ 250 (266)
++.+.+.+++|. +.+++|.+|||||+++|++||+|+|+++|++|+++++++++++ .+|||+|+ .|++++|+
T Consensus 159 ~~~l~~~~~~v~---~~~~~p~~rITltl~~I~~A~~iilla~G~~Ka~av~~~l~g~-----~~Pas~l~-~h~~~~~~ 229 (232)
T 1vl1_A 159 TGNKDNLVTFTD---PSGDPKVPRVTLTFRALNTSLYVLFLIRGKEKINRLTEILKDT-----PLPAYFVR-GKEKTVWF 229 (232)
T ss_dssp HHTCSSSEEECS---SBTTTTBCEEEECHHHHTTCSEEEEEEESHHHHHHHHHHHTTC-----CCGGGGCC-CSSEEEEE
T ss_pred CcccccCCcEEe---cCCCCCCCEEECCHHHHHhCCEEEEEEcCHHHHHHHHHHHhCC-----CCChHHhC-cCCCEEEE
Confidence 877666555543 5678999999999999999999999999999999999999972 39999999 59999999
Q ss_pred ecH
Q 024509 251 LDK 253 (266)
Q Consensus 251 ~D~ 253 (266)
+|+
T Consensus 230 ~D~ 232 (232)
T 1vl1_A 230 VGK 232 (232)
T ss_dssp EEC
T ss_pred eCC
Confidence 995
No 13
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=100.00 E-value=7.2e-53 Score=377.76 Aligned_cols=232 Identities=22% Similarity=0.249 Sum_probs=203.9
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHh-cCcEEEEEcCCChHHHHHHHhc-ccCCCCCCCCcceEEecceee-cCCC
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASVKE-RGVFAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADERV-VAKN 87 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~-~~~~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr~-vp~~ 87 (266)
|++++|+|.+++++++|++|.+.+++++.+ ++.++|+|+||+||..+|+.|. .++...++|++|++|++|||+ ||.+
T Consensus 1 m~i~i~~~~~~la~~aA~~i~~~i~~~~~~~~~~~~lglsgGsTp~~~~~~L~~~~~~~~i~~~~v~v~~lDEr~gv~~~ 80 (289)
T 1ne7_A 1 MKLIILEHYSQASEWAAKYIRNRIIQFNPGPEKYFTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFNMDEYVGLPRD 80 (289)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSHHHHHHHHHHHHHHHTTSCCCTTEEEEESEEETTSCTT
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEcCCccHHHHHHHHHhhhhccCCCchheEEEeCceeecCCCC
Confidence 789999999999999999999988876543 4559999999999999997664 333457999999999999999 9999
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCeEeCCCC-CCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceec
Q 024509 88 HSDSNYKLAKEGLLSKVPIVPSHVHSINDS-LSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVAS 166 (266)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~-~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAs 166 (266)
|++||+++++++|++++++++.|+|.+++. .+++++|.+|++.|++ .++||++|||||+||||||
T Consensus 81 ~~~Sn~~~~~~~l~~~~~~~~~~i~~p~~~~~~~e~~~~~ye~~i~~--------------~~~~Dl~lLGiG~dGH~as 146 (289)
T 1ne7_A 81 HPESYHSFMWNNFFKHIDIHPENTHILDGNAVDLQAECDAFEEKIKA--------------AGGIELFVGGIGPDGHIAF 146 (289)
T ss_dssp STTSHHHHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHH--------------TTSCSEEEECCCTTCCSTT
T ss_pred cHHHHHHHHHHHhhccCCCCHHHEecCCCCCCCHHHHHHHHHHHHHh--------------cCCCCEEEEccCCCCccee
Confidence 999999999999999999999999999874 4899999999999997 3589999999999999999
Q ss_pred cCCCCCccccccceEEe-----------e-cCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcc
Q 024509 167 LFPNHSVLDVKNQWVSF-----------I-TDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPS 234 (266)
Q Consensus 167 lfP~~~~~~~~~~~v~~-----------~-~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~ 234 (266)
||||++. .+.+.++.. + .+.+.+|..|||||++.|++|++++++++|++|++++++++.++. +.+
T Consensus 147 lfPg~~l-~~~~~~~~L~~~~~~~~~~~f~~~~~~vp~~~iTl~l~~l~~a~~vi~la~G~~Ka~ai~~al~g~~--~~~ 223 (289)
T 1ne7_A 147 NEPGSSL-VSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGV--NHM 223 (289)
T ss_dssp CCTTCCT-TCCSEEEECCHHHHHHHGGGTTTCGGGSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHTSCC--CTT
T ss_pred cCCCCCC-ccccceEEcchhhhhhhhccccCCCCCCCCEEEECCHHHHhcCCEEEEEEcCHHHHHHHHHHHhCCC--Ccc
Confidence 9999875 333333321 1 234667899999999999999999999999999999999999976 568
Q ss_pred cccccccccCCeEEEEecHHHHhccc
Q 024509 235 LPARMAQPTNGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 235 ~Pas~l~~~~~~~~~~~D~~Aa~~l~ 260 (266)
+|+|+|+ .|++++|++|++||+.|+
T Consensus 224 ~Pas~l~-~h~~~~li~D~~aA~~L~ 248 (289)
T 1ne7_A 224 WTVSAFQ-QHPRTVFVCDEDATLELK 248 (289)
T ss_dssp SGGGGGG-GCSSEEEEEEGGGGTTSB
T ss_pred CchHHHc-cCCCEEEEEcHHHHhhcc
Confidence 9999999 699999999999999885
No 14
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=100.00 E-value=9.2e-52 Score=361.18 Aligned_cols=229 Identities=20% Similarity=0.231 Sum_probs=198.8
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhc-ccCCCCCCCCcceEEecceee-cCCCC
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADERV-VAKNH 88 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr~-vp~~~ 88 (266)
|++++|+|.+++++++|++|.+.+ ++++.++|+|+||+||..+|+.|. .++...++|++|+||++|||+ ||.+|
T Consensus 1 m~~~~~~~~~~l~~~aA~~l~~~i----~~~~~~~i~lsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~~lder~gv~~~~ 76 (242)
T 2bkx_A 1 MKVMECQTYEELSQIAARITADTI----KEKPDAVLGLATGGTPEGTYRQLIRLHQTENLSFQNITTVNLDEYAGLSSDD 76 (242)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHH----HHCTTCEEEECCSSTTHHHHHHHHHHHHHSCCCCTTCEEEESEEETTCCTTS
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHH----HHCCCeEEEECCCCCHHHHHHHHHHHhhccCCChhheEEEeCccccCCCCCc
Confidence 789999999999999999998754 457889999999999999997664 222346899999999999999 99999
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCeEeCCC-CCCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceecc
Q 024509 89 SDSNYKLAKEGLLSKVPIVPSHVHSIND-SLSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASL 167 (266)
Q Consensus 89 ~~Sn~~~l~~~ll~~~~i~~~~v~~~~~-~~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAsl 167 (266)
++||+++++++|+++++++..|+|.+++ ..+++++|.+|++.|+. .++||++|||||+|||+|||
T Consensus 77 ~~sn~~~~~~~l~~~~~~~~~~i~~p~~~~~~~~~~~~~y~~~i~~--------------~~~~Dl~llGiG~dgh~a~l 142 (242)
T 2bkx_A 77 PNSYHFYMNDRFFQHIDSKPSRHFIPNGNADDLEAECRRYEQLVDS--------------LGDTDIQLLGIGRNGHIGFN 142 (242)
T ss_dssp TTSHHHHHHHHTGGGSCCCGGGEECCCTTCSCHHHHHHHHHHHHHH--------------TTSCSEEEECCCTTSCBTTB
T ss_pred hHHHHHHHHHHHhccCCCCHHHEEcCCCCCCCHHHHHHHHHHHHHh--------------cCCCCEEEECcCCCCcceeC
Confidence 9999999999999999999999999986 46899999999999986 36899999999999999999
Q ss_pred CCCCCcccccc--------ceEE--eecCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCccccc
Q 024509 168 FPNHSVLDVKN--------QWVS--FITDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPA 237 (266)
Q Consensus 168 fP~~~~~~~~~--------~~v~--~~~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pa 237 (266)
|||+++.+++. ..+. .+.+.+++|.+|||||++.|++|++++++++|++|++++++++.++. +.++|+
T Consensus 143 ~p~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~p~~~itltl~~l~~a~~vi~va~G~~Ka~ai~~al~g~~--~~~~Pa 220 (242)
T 2bkx_A 143 EPGTSFKSRTHVVTLNEQTRQANARYFPSIDSVPKKALTMGIQTILSSKRILLLISGKSKAEAVRKLLEGNI--SEDFPA 220 (242)
T ss_dssp CTTCCTTCCSEEEECCHHHHHHHGGGSSSGGGSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHHTCC--CTTSGG
T ss_pred CCCCccccCceEEeCCHHHHHHHhhhcCCCCCCCCccEEcCHHHHhhcCEEEEEEeChHHHHHHHHHHcCCC--CCcccH
Confidence 99987543321 1000 12223567889999999999999999999999999999999999986 678999
Q ss_pred ccccccCCeEEEEecHHHHhccc
Q 024509 238 RMAQPTNGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 238 s~l~~~~~~~~~~~D~~Aa~~l~ 260 (266)
|+|+ .|++++||+|++||++|+
T Consensus 221 s~l~-~~~~~~~~~D~~Aa~~l~ 242 (242)
T 2bkx_A 221 SALH-LHSDVTVLIDREAASLRP 242 (242)
T ss_dssp GGGG-GCSSEEEEEETTTTTTCC
T ss_pred HHhc-cCCCEEEEEchHHhccCC
Confidence 9999 589999999999998763
No 15
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=100.00 E-value=2.3e-51 Score=363.71 Aligned_cols=232 Identities=22% Similarity=0.270 Sum_probs=204.0
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHH-HhcCcEEEEEcCCChHHHHHHHhc-ccCCCCCCCCcceEEecceee-cCCC
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASV-KERGVFAIALSGGSLIGLMGKLCE-APYNKTVDWAKWYIFWADERV-VAKN 87 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i-~~~~~~~l~lsGGstp~~l~~ll~-~~~~~~i~w~~v~~f~~DEr~-vp~~ 87 (266)
|++++|+|.+++++++|++|.+.+++++ ++++.++|+|+||+||..+|+.|. .++..+++|++|+||++|||+ ||.+
T Consensus 1 m~~~~~~~~~~l~~~aA~~l~~~l~~~~~~~~~~~~i~lsgGsTp~~~~~~L~~~~~~~~~~~~~v~v~~ldEr~gv~~~ 80 (266)
T 1fs5_A 1 MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKE 80 (266)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHHHCCCSSSCEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEEESEEESSCCTT
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHHhhhcccCceEEEEcCCCCHHHHHHHHHHHhhcCCCChHHeEEEeCeeccCCCCC
Confidence 7899999999999999999999998877 678899999999999999997664 333457999999999999999 9999
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCeEeCCCC-CCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceec
Q 024509 88 HSDSNYKLAKEGLLSKVPIVPSHVHSINDS-LSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVAS 166 (266)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~-~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAs 166 (266)
|++||+++++++|++++++++.|+|.+++. .+++++|.+|++.|++. ++||++|||||+||||||
T Consensus 81 ~~~sn~~~~~~~l~~~~~~~~~~i~~p~~~~~~~e~~~~~y~~~l~~~--------------~~~Dl~llGiG~dGh~as 146 (266)
T 1fs5_A 81 HPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSY--------------GKIHLFMGGVGNDGHIAF 146 (266)
T ss_dssp STTSHHHHHHHHTGGGSCCCGGGEECCCTTCSSHHHHHHHHHHHHHHH--------------CCCSEEEECCCTTCCSTT
T ss_pred CHHHHHHHHHHHhhccCCCCHHHEEeCCCCCCCHHHHHHHHHHHHHhc--------------CCCCEEEEccCCCCCeee
Confidence 999999999999999999999999999876 48999999999999873 579999999999999999
Q ss_pred cCCCCCccccccceEEe-----------e-cCCCCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcc
Q 024509 167 LFPNHSVLDVKNQWVSF-----------I-TDSPKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPS 234 (266)
Q Consensus 167 lfP~~~~~~~~~~~v~~-----------~-~~~~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~ 234 (266)
||||+++. +.+.++.. + .+.+.+|..+||||++.|++|++++++++|++|++++++++.++. +.+
T Consensus 147 l~pg~~~~-~~~~~~~l~~~~~~~~~~~f~~~~~~~p~~~itl~l~~l~~a~~vi~va~G~~Ka~ai~~al~g~~--~~~ 223 (266)
T 1fs5_A 147 NEPASSLA-SRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCV--NHM 223 (266)
T ss_dssp CCSSCCTT-CCSEEEECCHHHHHHHGGGTTTCGGGSCSEEEECCHHHHHTSSCEEEEECSGGGHHHHHHHHHSCC--CSS
T ss_pred cCCCCCCC-ccccEEEechhhhhhhhccccCCcCCCCcEEEECChHHHhcCCEEEEEecChHHHHHHHHHhcCCC--CCc
Confidence 99998754 32333321 1 133456777888888999999999999999999999999999876 678
Q ss_pred cccccccccCCeEEEEecHHHHhccc
Q 024509 235 LPARMAQPTNGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 235 ~Pas~l~~~~~~~~~~~D~~Aa~~l~ 260 (266)
+|+|+++ .|++++|++|++||+.|+
T Consensus 224 ~Pas~l~-~~~~~~li~D~~aA~~L~ 248 (266)
T 1fs5_A 224 WTISCLQ-LHPKAIMVCDEPSTMELK 248 (266)
T ss_dssp SGGGGGG-GCSSEEEEECSGGGTTSB
T ss_pred CChHHHc-cCCCEEEEEeHHHhhhcc
Confidence 9999999 689999999999999885
No 16
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=100.00 E-value=4.8e-49 Score=342.49 Aligned_cols=220 Identities=21% Similarity=0.246 Sum_probs=190.3
Q ss_pred CcEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceee-cCCCC
Q 024509 10 RGELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV-VAKNH 88 (266)
Q Consensus 10 ~~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~-vp~~~ 88 (266)
+|++++|+|.+++++++|++|.+.+ ++++. +|+|+||+||..+|+.+.. .+++|++|+||++|||+ ||.+|
T Consensus 1 ~m~~~~~~~~~~l~~~aA~~l~~~i----~~~~~-~i~ls~G~T~~~~~~~L~~---~~~~~~~v~v~~ldEr~gv~~~~ 72 (234)
T 2ri0_A 1 SMKTIKVKNKTEGSKVAFRMLEEEI----TFGAK-TLGLATGSTPLELYKEIRE---SHLDFSDMVSINLDEYVGLSADD 72 (234)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHH----HTTCC-EEEECCSSTTHHHHHHHHT---SCCCCTTCEEEESEEETTCCTTS
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHH----HhCCC-EEEEcCCCCHHHHHHHHHh---cCCChhheEEEeCeeecCCCCCC
Confidence 4899999999999999999998754 44667 9999999999999987764 36899999999999997 99999
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCeEeCCCC-CCHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceecc
Q 024509 89 SDSNYKLAKEGLLSKVPIVPSHVHSINDS-LSAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASL 167 (266)
Q Consensus 89 ~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~-~d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAsl 167 (266)
++||+++++++|++++++++. |.+++. .+++++|.+|++.|++ ++||++|||||+|||+|||
T Consensus 73 ~~sn~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~y~~~i~~---------------~~~Dl~llGiG~dgh~a~l 135 (234)
T 2ri0_A 73 KQSYAYFMKQNLFAAKPFKKS--YLPNGLAADLAKETEYYDQILAQ---------------YPIDLQILGIGRNAHIGFN 135 (234)
T ss_dssp TTSHHHHHHHHTTTTSCCSEE--ECCCTTCSCHHHHHHHHHHHHHH---------------SCCSEEEECCCTTSCBTTB
T ss_pred hHHHHHHHHHHHhccCCCcHh--hcCCCCCCCHHHHHHHHHHHHHh---------------CCCCEEEEccCCCCCchhc
Confidence 999999999999999998876 444443 4899999999999986 2699999999999999999
Q ss_pred CCCCCccccccceEEeec-----------CC-CCCCCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCccc
Q 024509 168 FPNHSVLDVKNQWVSFIT-----------DS-PKPPPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSL 235 (266)
Q Consensus 168 fP~~~~~~~~~~~v~~~~-----------~~-~~~p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~ 235 (266)
|||.++.. .+.++ .+. +. +.+|.+|||||++.|+++++++++++|++|++++++++.++. +.++
T Consensus 136 ~p~~~~~~-~~~~~-~l~~~~~~~~~~~fd~~~~~~~~~itl~l~~l~~a~~vi~va~G~~Ka~ai~~al~g~~--~~~~ 211 (234)
T 2ri0_A 136 EPGTAFSS-QTHLV-DLTPSTIAANSRFFEKAEDVPKQAISMGLASIMSAKMILLMAFGEEKAEAVAAMVKGPV--TEEI 211 (234)
T ss_dssp CTTCCTTC-CSEEE-ECCHHHHHHHHTTCSCGGGSCCEEEECCHHHHHTSSEEEEEECSGGGHHHHHHHHHSCC--CTTS
T ss_pred CCCCCCCC-CceEE-ECCHHHHHHhhhhcCCccCCCCceEEeCHHHHhhcCEEEEEEeChHHHHHHHHHHcCCC--CCcc
Confidence 99987433 33333 331 22 346889999999999999999999999999999999999987 6789
Q ss_pred ccccccccCCeEEEEecHHHHhcc
Q 024509 236 PARMAQPTNGKLVWFLDKPAASKL 259 (266)
Q Consensus 236 Pas~l~~~~~~~~~~~D~~Aa~~l 259 (266)
|+|+|+ .|++++||+|++||++|
T Consensus 212 Pas~l~-~~~~~~~~~D~~Aa~~l 234 (234)
T 2ri0_A 212 PASILQ-THPKVILIVDEKAGAGI 234 (234)
T ss_dssp GGGGGG-GCSSEEEEEETTTTTTC
T ss_pred chHHHh-hCCCEEEEEchHHhccC
Confidence 999999 58999999999999864
No 17
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=99.90 E-value=5.3e-24 Score=187.13 Aligned_cols=204 Identities=15% Similarity=0.154 Sum_probs=156.1
Q ss_pred cEEEEeCC--------HHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEeccee
Q 024509 11 GELRIHES--------VEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADER 82 (266)
Q Consensus 11 ~~~~v~~~--------~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr 82 (266)
++++|.++ .+++++++|++|.+. ++ +..+|+|++|+||..+|+.+.. .++|++++|+++|+
T Consensus 23 ~~viVv~~~~~~~~~~~~~l~~~aA~~l~~~----l~--~~~viGla~G~T~~~~~~~l~~----~~~~~~v~~v~L~g- 91 (255)
T 2okg_A 23 KDAIIVSGDSDQSPWVKKEMGRAAVACMKKR----FS--GKNIVAVTGGTTIEAVAEMMTP----DSKNRELLFVPARG- 91 (255)
T ss_dssp SEEEEESSCTTTCTHHHHHHHHHHHHHHHHH----CC--SEEEEEECCSHHHHHHHHHCCC----CTTCCEEEEEESEE-
T ss_pred CeEEEECCCCCchhHHHHHHHHHHHHHHHHh----CC--CCCEEEECCcHHHHHHHHhhcc----ccCCCCCEEEECCC-
Confidence 35666665 567888888887753 43 4679999999999999987753 25899999999997
Q ss_pred ecCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCCC----CHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEecc
Q 024509 83 VVAKNHSDSNYKLAKEGLLSKVPIVPSHVHSINDSL----SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGM 158 (266)
Q Consensus 83 ~vp~~~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~~----d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~ 158 (266)
-++. |++|+..+|.++|+++++++..++|.|++.. +...++..|++.|+.. ++.|++++||
T Consensus 92 gl~~-~~~~~~~~~~~~la~~~~~~~~~l~~P~~~~~~~~~~l~~~~~~~~~l~~~--------------~~~Di~l~GI 156 (255)
T 2okg_A 92 GLGE-DVKNQANTICAHMAEKASGTYRLLFVPGQLSQGAYSSIIEEPSVKEVLNTI--------------KSASMLVHGI 156 (255)
T ss_dssp ECC----CCHHHHHHHHHHHHHTCEECCCCCCCSCCHHHHHHHHTSHHHHHHHHHH--------------HTCSEEEECC
T ss_pred CCCC-CcccCHHHHHHHHHHHHCCeeEEEeccccCCHHHHHHHHcChHHHHHHHHH--------------hcCCEEEEec
Confidence 4566 8999999999999999999999999988754 2225678899988863 5799999999
Q ss_pred CCCCceeccCCCCCccccc-------cceEE-----eec-CCCCCC-CCeEEeCHHHHhcccceEEEEeCccHHHHHHHH
Q 024509 159 GSDGHVASLFPNHSVLDVK-------NQWVS-----FIT-DSPKPP-PERITFTLPVINSASIVVVVVTGESKAEAVHLA 224 (266)
Q Consensus 159 G~DGHiAslfP~~~~~~~~-------~~~v~-----~~~-~~~~~p-~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~ 224 (266)
|.+||++ +|+- .+.+ ...+- .+. +...+| .+.|||+++.|++++++++++.|++|+++++.+
T Consensus 157 G~~~~i~--~~g~--~~~~~~~~L~~~~avg~~~~rffd~~G~~V~~~~~igi~l~~i~~~~~vI~vA~G~~Ka~AI~aa 232 (255)
T 2okg_A 157 GEAKTMA--QRRN--TPLEDLKKIDDNDAVTEAFGYYFNADGEVVHKVHSVGMQLDDIDAIPDIIAVAGGSSKAEAIEAY 232 (255)
T ss_dssp EEHHHHH--HHTT--CCHHHHHHHHHTTEEEEETTEEEETTSCEEEECSEEECCGGGGGGCSEEEEECCSGGGHHHHHHH
T ss_pred CCchhhh--hcCC--CCHHHHHHHHHCCeEEEeehhhhccCCCCccCCceecCCHHHHhCCCCEEEEEcCHHHHHHHHHH
Confidence 9999996 7872 2211 00010 121 222345 789999999999999999999999999999999
Q ss_pred HhCCCCCCcccccccccccCCeEEEEecHHHHhccc
Q 024509 225 IDDLGPNCPSLPARMAQPTNGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 225 l~~~~~~~~~~Pas~l~~~~~~~~~~~D~~Aa~~l~ 260 (266)
|.++. ..++++|++||..|-
T Consensus 233 l~g~~----------------~~~LItDe~aA~~LL 252 (255)
T 2okg_A 233 FKKPR----------------NTVLVTDEGAAKKLL 252 (255)
T ss_dssp TTSCC----------------CEEEEEEHHHHHHHH
T ss_pred HhCCC----------------CCEEEECHHHHHHHH
Confidence 99864 137789999998763
No 18
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=99.88 E-value=9.1e-23 Score=180.11 Aligned_cols=195 Identities=15% Similarity=0.055 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEc-CCChHHHHHHHhcccCCCCCCCC-cceEEecceeecCCCChhhHHHHHH
Q 024509 20 EELSTNLADYIADLSEASVKERGVFAIALS-GGSLIGLMGKLCEAPYNKTVDWA-KWYIFWADERVVAKNHSDSNYKLAK 97 (266)
Q Consensus 20 ~~l~~~~a~~i~~~i~~~i~~~~~~~l~ls-GGstp~~l~~ll~~~~~~~i~w~-~v~~f~~DEr~vp~~~~~Sn~~~l~ 97 (266)
+++++++|++|. +.++ +..+|+|+ +|+||..+|+.+... . .|+ +++|+++|| -++ +|++|+..+|.
T Consensus 41 ~~l~~~aA~~l~----~~l~--~~~viGla~~G~T~~~~~~~l~~~---~-~~~~~v~~v~L~g-gl~-~~~~~~~~~~~ 108 (264)
T 2r5f_A 41 QAIGSAAAHYLE----TSLS--AQDHIGISSWSSTIRAMVSHMHPQ---P-GKQSAQEVVQLLG-GVG-NKGAFEATLLT 108 (264)
T ss_dssp HHHHHHHHHHHH----HHCC--TTCEEEECTTCHHHHHHHHTCCC------CCCCCSEEEECEE-CCC---CHHHHHHHH
T ss_pred HHHHHHHHHHHH----HhCC--CCCEEEECcchHHHHHHHHhhccc---c-CCCCCcEEEECCC-CCC-CccccCHHHHH
Confidence 345555666555 4454 35689999 999999999876541 2 257 999999999 567 89999999999
Q ss_pred HHhcCCCCCCCCCeEeCCCCC-----CHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCC---CceeccCC
Q 024509 98 EGLLSKVPIVPSHVHSINDSL-----SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSD---GHVASLFP 169 (266)
Q Consensus 98 ~~ll~~~~i~~~~v~~~~~~~-----d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~D---GHiAslfP 169 (266)
++|+++++++..++|.+.... +...++..|++.|+. .++.|++++|||.+ ||+ ++ |
T Consensus 109 ~~la~~~~~~~~~l~~P~~~~~~~~~~~~~~~~~~~~~l~~--------------~~~~Di~l~GIG~~~~~~~i-~~-~ 172 (264)
T 2r5f_A 109 QRLATLLNCPAFLLPSQSIEQSVESKQRIVEMEEVKEVLHR--------------FDSITLAIVGIGELEPSQLL-RN-S 172 (264)
T ss_dssp HHHHHHHTSCEECCCCC----------CCHHHHHHHHHHHH--------------TTTCCEEEECCEECC----------
T ss_pred HHHHHHhCCeeEEeeCCcccCCHHHHHHHHcChHHHHHHHH--------------HhcCCEEEEecCCCCCCccH-hh-c
Confidence 999999999888888876431 445689999999986 36899999999987 999 87 8
Q ss_pred CCCcccccc-------ceE-----Eeec-CCCCCC----CCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCC
Q 024509 170 NHSVLDVKN-------QWV-----SFIT-DSPKPP----PERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNC 232 (266)
Q Consensus 170 ~~~~~~~~~-------~~v-----~~~~-~~~~~p----~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~ 232 (266)
|+ ..+++. ..+ ..+. +...+| .+.|||+++.|++++++++++.|++|+++++.+|.++..
T Consensus 173 g~-~~~~~~~~~L~~~~avgd~~~rffd~~G~~V~~~~~~r~i~i~l~~l~~~~~vI~vA~G~~Ka~AI~aal~g~~~-- 249 (264)
T 2r5f_A 173 GN-YYTEDMLRVLAERGAVGDICLRYFDAQGKPVLEEDEEFVVSMGLGKLRSINRVLGLAGGVRKVQAIKGALLGGYL-- 249 (264)
T ss_dssp ------------CTTTTCCEEETTEEECTTSCBC-------CEECCHHHHHTSSEEEEECCCGGGHHHHHHHHHTTCC--
T ss_pred CC-CCCHHHHHHHHHCCcEEEeEhhhhccCCCCCCCccccceecCCHHHHcCCCCEEEEEcCHHHHHHHHHHHhcCCC--
Confidence 74 322210 001 0121 223456 789999999999999999999999999999999998641
Q ss_pred cccccccccccCCeEEEEecHHHHhcc
Q 024509 233 PSLPARMAQPTNGKLVWFLDKPAASKL 259 (266)
Q Consensus 233 ~~~Pas~l~~~~~~~~~~~D~~Aa~~l 259 (266)
.++++|++||..|
T Consensus 250 --------------~~LItDe~aA~~L 262 (264)
T 2r5f_A 250 --------------DVLITDVGTARGL 262 (264)
T ss_dssp --------------SEEEEEHHHHHHH
T ss_pred --------------CEEEECHHHHHHH
Confidence 2678999999875
No 19
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=99.86 E-value=1.3e-21 Score=172.95 Aligned_cols=199 Identities=12% Similarity=0.061 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHHH
Q 024509 20 EELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEG 99 (266)
Q Consensus 20 ~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ 99 (266)
+++++++|++|.+ .++ +..+|+|++|+||..+|+.+.. .+|++++|+++|+ -++.+|++|+..+|.++
T Consensus 41 ~~l~~~aA~~l~~----~l~--~~~viGla~G~T~~~~~~~l~~-----~~~~~v~~v~L~g-gl~~~~~~~~~~~~~~~ 108 (266)
T 2gnp_A 41 ERISQVAAGVLRN----LID--DNMKIGFSWGKSLSNLVDLIHS-----KSVRNVHFYPLAG-GPSHIHAKYHVNTLIYE 108 (266)
T ss_dssp HHHHHHHHHHHHH----HCC--TTCEEEECCSHHHHHHHHHCCC-----CCCSSCEEEESBC-CCTTSCGGGSHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCC--CCCEEEECChHHHHHHHHhccc-----cCCCCCEEEECCC-CCCCCccccCHHHHHHH
Confidence 4456666666654 444 3568999999999999987754 4899999999997 46888999999999999
Q ss_pred hcCCCCCCCCCeEeCCCCC-----CHHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccC-CCCCc
Q 024509 100 LLSKVPIVPSHVHSINDSL-----SAEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLF-PNHSV 173 (266)
Q Consensus 100 ll~~~~i~~~~v~~~~~~~-----d~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslf-P~~~~ 173 (266)
|+++++++..++|.|..-. +...++..|++.|+. .++.|++++|||.+||-++++ |+-..
T Consensus 109 la~~~~~~~~~l~~P~~~~~~~~~~~~~~~~~~~~~l~~--------------~~~~Di~l~GIG~~~~~~~~~~~g~~s 174 (266)
T 2gnp_A 109 MSRKFHGECTFMNATIVQENKLLADGILQSRYFENLKNS--------------WKDLDIAVVGIGDFSNKGKHQWLDMLT 174 (266)
T ss_dssp HHHHHTCEECCCCSCSBCSSHHHHHHHHTSTTTHHHHHH--------------TTSCSEEEECCEECSHHHHHTTTTTSC
T ss_pred HHHHhCCeeEEEeCCcccCCHHHHHHHHcCHHHHHHHHH--------------HHhCCEEEEecCCCCCCCcchhcCCCC
Confidence 9999999988998887543 345567888888886 368999999999999855443 33110
Q ss_pred ------cccccce--E--Eeec-CCCCCC----CCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccccc
Q 024509 174 ------LDVKNQW--V--SFIT-DSPKPP----PERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLPAR 238 (266)
Q Consensus 174 ------~~~~~~~--v--~~~~-~~~~~p----~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~Pas 238 (266)
+.+.+.. + ..+. +...+| .+.|||++..|++++++++++.|++|+++++.+|.++..
T Consensus 175 ~~~~~~L~~~~avgd~~~rffd~~G~~V~~~~~~r~i~i~l~~i~~~~~vI~vA~G~~Ka~AI~aal~g~~~-------- 246 (266)
T 2gnp_A 175 EDDFKELTKVKTVGEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLV-------- 246 (266)
T ss_dssp HHHHHHHHHTTCCEEETTEEECTTSCCCCHHHHTTBCBCCHHHHTTSSEEEEECCSGGGHHHHHHHHHTTCC--------
T ss_pred HHHHHHHHHCCeEEEEEchhhccCCCCCCCccccceecCCHHHHcCCCCEEEEecChhhHHHHHHHHhcCCC--------
Confidence 1111100 0 0122 223567 899999999999999999999999999999999998641
Q ss_pred cccccCCeEEEEecHHHHhccc
Q 024509 239 MAQPTNGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 239 ~l~~~~~~~~~~~D~~Aa~~l~ 260 (266)
.++++|++||..|-
T Consensus 247 --------~~LItDe~aA~~Ll 260 (266)
T 2gnp_A 247 --------NHLITDKNTILKVL 260 (266)
T ss_dssp --------SEEEEEHHHHHHHH
T ss_pred --------CEEEECHHHHHHHH
Confidence 26789999998763
No 20
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=99.82 E-value=7.4e-21 Score=173.86 Aligned_cols=199 Identities=13% Similarity=0.104 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHH
Q 024509 19 VEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKE 98 (266)
Q Consensus 19 ~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~ 98 (266)
.+++++++|+++.+ .+..+ ..+|+|++|+||..+|+.+... .++|+++++|.+|+ -++. |++||..++.+
T Consensus 124 k~~ia~~AA~~l~~----~i~~~-~~~igl~~GsT~~~~~~~L~~~---~~~~~~v~vv~l~g-gl~~-~~~~~~~~i~~ 193 (345)
T 2o0m_A 124 LSDFGDVLTNTLNL----LLPNG-ENTIAVMGGTTMAMVAENMGSL---ETEKRHNLFVPARG-GIGE-AVSVQANSISA 193 (345)
T ss_dssp HHHHHHHHHHHHHH----HCCSE-EEEEEECCSHHHHHHHHTCCCC---CCSSEEEEEEESBS-CCCC-CGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHH----hcCcC-CCEEEECCcHHHHHHHHHhhhc---cCCCCCcEEEEcCC-cCCC-CcccCHHHHHH
Confidence 35567777776654 44432 5789999999999999877541 25889999999998 4566 89999999999
Q ss_pred HhcCCCCCCCCCeEeCCCCCC----HHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccCCCCCcc
Q 024509 99 GLLSKVPIVPSHVHSINDSLS----AEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVL 174 (266)
Q Consensus 99 ~ll~~~~i~~~~v~~~~~~~d----~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~~ 174 (266)
+|+++++.+..++|.|++..+ ...++..|++.|+.. +++|++++|+|.+||++ +||- .
T Consensus 194 ~la~~~~~~~~~l~~P~~~~~~~~~~l~~~~~~~~~l~~~--------------~~~DiailGIG~~~~i~--~~g~--~ 255 (345)
T 2o0m_A 194 VMANKTGGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLI--------------SHANCVVHSIGRALHMA--ARRK--M 255 (345)
T ss_dssp HHHHHHTCEECCCCCCSSCCHHHHHHHHTCHHHHHHHHHH--------------HTCSEEEECCEEHHHHH--HHTT--C
T ss_pred HHHHHhCCceEEEeccccCCHHHHHHHHhChHHHHHHHHH--------------HcCCEEEEccCCchhhh--hcCC--C
Confidence 999999888888888766541 224578888888863 47999999999999987 7772 2
Q ss_pred cc--------ccc--eE--Eeec-CCCCCC-CCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhC-CCCCCccccccc
Q 024509 175 DV--------KNQ--WV--SFIT-DSPKPP-PERITFTLPVINSASIVVVVVTGESKAEAVHLAIDD-LGPNCPSLPARM 239 (266)
Q Consensus 175 ~~--------~~~--~v--~~~~-~~~~~p-~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~-~~~~~~~~Pas~ 239 (266)
+. .+. .+ ..+. +...+| .+.|||+++.|++++++++++.|++|+++++.++.+ +.
T Consensus 256 ~~~~~~~L~~~~avg~~~~~ffd~~g~~v~~~~~i~i~l~~l~~~~~vi~vA~G~~Ka~Ai~~al~g~~~---------- 325 (345)
T 2o0m_A 256 SDDEMVMLKQKNAVAESFGYFFDEEGKVVYKIPRIGLQLKNLQEIPYVVAIAGGKTKAKAIRAYMKNAPK---------- 325 (345)
T ss_dssp CHHHHHHHHHTTCCEEETTEEECTTSCEEEECCCSBCCGGGGGGCSEEEEECCSGGGHHHHHHHHTTSCT----------
T ss_pred CHHHHHHHHHCCeEEEeeccccccCCCCcCCCceecCCHHHHcCCCCEEEEEcChHHHHHHHHHHhCCCC----------
Confidence 11 110 00 0121 112345 679999999999999999999999999999999998 64
Q ss_pred ccccCCeEEEEecHHHHhcccc
Q 024509 240 AQPTNGKLVWFLDKPAASKLQS 261 (266)
Q Consensus 240 l~~~~~~~~~~~D~~Aa~~l~~ 261 (266)
..++++|++||..|-.
T Consensus 326 ------~~~LitDe~aA~~ll~ 341 (345)
T 2o0m_A 326 ------QTWLITDEAAANEILK 341 (345)
T ss_dssp ------TCEEEEEHHHHHHHTC
T ss_pred ------CeEEEECHHHHHHHHh
Confidence 2667899999987643
No 21
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=99.82 E-value=7.5e-20 Score=165.13 Aligned_cols=198 Identities=10% Similarity=0.012 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecC-CCChhhHHHHHH
Q 024509 19 VEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVA-KNHSDSNYKLAK 97 (266)
Q Consensus 19 ~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp-~~~~~Sn~~~l~ 97 (266)
.+++++++|+++.+ .++ +..+|+|++|+||..+|+.+.. ..+|++++|+.+|. -++ .+|++||..++.
T Consensus 92 k~~ia~~AA~~l~~----~i~--~~~~igl~~GsT~~~~~~~L~~----~~~~~~~~vv~l~g-gl~~~~~~~~~~~~i~ 160 (315)
T 2w48_A 92 LSAMGQHGALLVDR----LLE--PGDIIGFSWGRAVRSLVENLPQ----RSQSRQVICVPIIG-GPSGKLESRYHVNTLT 160 (315)
T ss_dssp HHHHHHHHHHHHHH----HCC--TTCEEEECCSHHHHHHHTTSCC----CSSCCCCEEEESBC-BCTTSSCGGGCHHHHH
T ss_pred HHHHHHHHHHHHHH----hCC--CCCEEEECChHHHHHHHHhhcc----ccCCCCcEEEEcCC-CCCCCCccccCHHHHH
Confidence 35566777776654 443 3458999999999999977643 12788999999995 356 789999999999
Q ss_pred HHhcCCCCCCCCCeEeCCCCCC-----HHHHHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccCC-CC
Q 024509 98 EGLLSKVPIVPSHVHSINDSLS-----AEEAADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFP-NH 171 (266)
Q Consensus 98 ~~ll~~~~i~~~~v~~~~~~~d-----~~~~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP-~~ 171 (266)
++|+++++....++|.|....+ ...++..|++.|+.. +++|++++|+| ||++++-| ++
T Consensus 161 ~~la~~~~~~~~~l~~P~~~~~~~~~~~l~~~~~~~~~l~~~--------------~~~DiailGIG--g~~~~~g~~~~ 224 (315)
T 2w48_A 161 YGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYW--------------DSLDVALVGIG--SPAIRDGANWH 224 (315)
T ss_dssp HHHHHHTTCEECCCCSBSBCSSHHHHHHHHHSHHHHHHHHHH--------------TTCSEEEECCB--CTTCCSSSCHH
T ss_pred HHHHHHHCCceeEeeCCcccCCHHHHHHHHhChHHHHHHHHH--------------hcCCEEEEccC--cchhhcCcccc
Confidence 9999999888878877665432 234678888888863 57999999999 99999854 00
Q ss_pred Cccccc-------cceE-----Eeec-CCCCCC----CCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcc
Q 024509 172 SVLDVK-------NQWV-----SFIT-DSPKPP----PERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPS 234 (266)
Q Consensus 172 ~~~~~~-------~~~v-----~~~~-~~~~~p----~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~ 234 (266)
+..+.+ ...+ ..+. +...+| .+.||||++.|++++++++++.|++|+++++.+|.++..
T Consensus 225 ~~~~~~~~~~L~~~~avg~~~~rffd~~g~~v~~~~~~~~i~~~l~~i~~~~~ii~vA~G~~Ka~Ai~~al~g~~~---- 300 (315)
T 2w48_A 225 AFYGSEESDDLNARHVAGDICSRFYDINGGLVDTNMSEKTLSIEMAKLRQARYSIGIAMGEEKYSGILGALHGRYI---- 300 (315)
T ss_dssp HHHCTHHHHHHHHTTEEEEETTEEEETTSCBCCCSSGGGBCBCCHHHHHTSSEEEEECCCGGGHHHHHHHHHTTSC----
T ss_pred ccCCHHHHHHHHHCCcEEEEECceECCCCCEeCCccccceecCCHHHHhCCCCEEEEecChHhHHHHHHHHhCCCC----
Confidence 121110 0001 0121 223456 789999999999999999999999999999999998641
Q ss_pred cccccccccCCeEEEEecHHHHhcc
Q 024509 235 LPARMAQPTNGKLVWFLDKPAASKL 259 (266)
Q Consensus 235 ~Pas~l~~~~~~~~~~~D~~Aa~~l 259 (266)
.++++|++||..|
T Consensus 301 ------------~~LitDe~aA~~l 313 (315)
T 2w48_A 301 ------------NCLVTNRETAELL 313 (315)
T ss_dssp ------------SEEEEEHHHHHHH
T ss_pred ------------CEEEECHHHHHHH
Confidence 2678999999865
No 22
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=99.58 E-value=1.3e-14 Score=127.92 Aligned_cols=197 Identities=12% Similarity=0.025 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChh-hHHHHHHHHh
Q 024509 22 LSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSD-SNYKLAKEGL 100 (266)
Q Consensus 22 l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~-Sn~~~l~~~l 100 (266)
..+.+++..++.+.+.++ +..+|++++|+|+..+++.+.. .+++++.|+.+++ -++.+++. ++...+.+.|
T Consensus 38 ~~~~lg~~aA~~L~~~l~--~~~viGv~wG~T~~~v~~~l~~-----~~~~~~~vV~l~G-g~~~~~~~~~~~n~i~~~l 109 (267)
T 3nze_A 38 TLDRVAMQAARTIGPLVD--SNAIIGVAWGATLSAVSRHLTR-----KMTHDSIVVQLNG-AGNMQTTGITYASDIMRRF 109 (267)
T ss_dssp HHHHHHHHHHHHHGGGCC--SSCEEEECCSHHHHHHHHTCCC-----CCCSSCEEEECSC-CCCTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC--CCCEEEECCCHHHHHHHHhcCc-----cCCCCCEEEECCC-CCCCCccccccHHHHHHHH
Confidence 344444444444445553 3469999999999999977643 4688999999999 45555665 5556888889
Q ss_pred cCCCCCCCCCeEeCCCCCCHHH-----HHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccCCCCCcc-
Q 024509 101 LSKVPIVPSHVHSINDSLSAEE-----AADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSVL- 174 (266)
Q Consensus 101 l~~~~i~~~~v~~~~~~~d~~~-----~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~~- 174 (266)
.++++.....+|.|....+++. ....|++.++.. .+.|++++|||..+| +|+++..
T Consensus 110 A~~~~~~~~~l~~P~~~~s~~~~~~l~~~~~i~~~l~~~--------------~~~Diai~GIG~~~~----~~~s~~~~ 171 (267)
T 3nze_A 110 GSAYGARVEQFPVPAFFDHASTKTAMWNERSVQRILDLQ--------------ARMSIAIFGVGSVDS----DYPSHVYA 171 (267)
T ss_dssp HHHHTCEEECCCSCSSCSSHHHHHHHTTCHHHHHHHHHH--------------HTCSEEEECCEECC---------CCCT
T ss_pred HHHhCCeEEEeeCCEEcCCHHHHHHHHhChHHHHHHHHH--------------hcCCEEEEecCCCCC----CCCChHHH
Confidence 9999887777777766544432 235566666542 479999999999997 3443322
Q ss_pred ----ccc-------cceEE-----eecCC-CCC----CCCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCc
Q 024509 175 ----DVK-------NQWVS-----FITDS-PKP----PPERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCP 233 (266)
Q Consensus 175 ----~~~-------~~~v~-----~~~~~-~~~----p~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~ 233 (266)
++. ...|- .+... ..+ +.+.|||++..|++++++++++.|.+|+++++.+|.++.
T Consensus 172 ~g~~s~~~~~~L~~~gaVGdi~~~ffd~~G~~v~~~~~~r~i~~~l~~l~~~~~vi~vA~G~~Ka~Ai~aal~g~~---- 247 (267)
T 3nze_A 172 GGYLDEHDLTMLAADDVVGDVATVFFRSDGSSDGITLNERSTGPSHEQLRQVRRRICVVSGASKINGLQGALAAGL---- 247 (267)
T ss_dssp TSCCCHHHHHHHHHTTEEEEETTEEEETTSCCTTCGGGGGCCSCCHHHHHTSSEEEEEECCGGGHHHHHHHHHTTC----
T ss_pred cCCCCHHHHHHHHHCCcEEEEecccccCCCCCCCcchhcceecCChHHHccCCeEEEEeCChHHHHHHHHHHhcCC----
Confidence 110 11110 11111 112 267899999999999999999999999999999999853
Q ss_pred ccccccccccCCeEEEEecHHHHhccc
Q 024509 234 SLPARMAQPTNGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 234 ~~Pas~l~~~~~~~~~~~D~~Aa~~l~ 260 (266)
-+ +.++|+.+|..|-
T Consensus 248 -----------~~-~LITDe~tA~~lL 262 (267)
T 3nze_A 248 -----------AT-DLILDEASARRLV 262 (267)
T ss_dssp -----------CS-EEEEEHHHHHHHT
T ss_pred -----------CC-EEEeCHHHHHHHH
Confidence 13 3578999988763
No 23
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=99.32 E-value=8e-12 Score=110.03 Aligned_cols=198 Identities=10% Similarity=-0.027 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCC-CcceEEecceeecCCCChhhHHHHHHH
Q 024509 20 EELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDW-AKWYIFWADERVVAKNHSDSNYKLAKE 98 (266)
Q Consensus 20 ~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w-~~v~~f~~DEr~vp~~~~~Sn~~~l~~ 98 (266)
+++++++|+++. +.++ +..+|++++|+|+..+++.+.. .+. .++.|+.+.--....+++.++...+.+
T Consensus 44 ~~lg~~aA~~L~----~~l~--~~~vIGv~wG~Tl~~v~~~l~~-----~~~~~~~~~V~l~Gg~~~~~~~~~~~n~i~~ 112 (266)
T 3efb_A 44 AMMGLHGAQLLD----RLLE--PGDIVGFSWGRAVSALVENLPQ-----AGQSRQLICVPIIGGPSGKLESRYHVNTLTY 112 (266)
T ss_dssp HHHHHHHHHHHH----HHCC--TTCEEEECCSHHHHHHHHTCCC-----CSSCCCCEEEESBCBCTTSSCGGGCHHHHHH
T ss_pred HHHHHHHHHHHH----HhCC--CCCEEEEcccHHHHHHHHhcCc-----cCCCCCeEEEEcCCCCCCCCccccCHHHHHH
Confidence 345555666655 4553 3469999999999999876643 222 367888888765555677877778888
Q ss_pred HhcCCCCCCCCCeEeCCCCCCHHH-----HHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccCCCCCc
Q 024509 99 GLLSKVPIVPSHVHSINDSLSAEE-----AADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFPNHSV 173 (266)
Q Consensus 99 ~ll~~~~i~~~~v~~~~~~~d~~~-----~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP~~~~ 173 (266)
.|-++++.....+|.|..-.+++. ....|++.++.. .+.|++++|+|....-.+++-. ..
T Consensus 113 ~lA~~~~~~~~~l~aP~~~~~~~~~~~l~~~~~i~~vl~~~--------------~~aDiai~GIG~~~~~~~~~~~-g~ 177 (266)
T 3efb_A 113 SAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYW--------------DNLDIALVGIGSPAIRDGANWH-AF 177 (266)
T ss_dssp HHHHHTTCEECCCCSBSBCSSHHHHHHHHTSHHHHHHHHHH--------------HTCSEEEECCBCCC----------C
T ss_pred HHHHHhCCeEEEEeCCeecCCHHHHHHHHhChHHHHHHHHH--------------hcCCEEEEecCCCCCCchhHHh-cC
Confidence 888888887777877766555432 224555555542 4789999999986422222110 01
Q ss_pred cccc-------cceEE----eecCCC-C-CC----CCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccc
Q 024509 174 LDVK-------NQWVS----FITDSP-K-PP----PERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLP 236 (266)
Q Consensus 174 ~~~~-------~~~v~----~~~~~~-~-~p----~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~P 236 (266)
+++. ...|- .+.+.. . ++ .+.|||++..|+++++++.++.|.+|+++++.+|.++.
T Consensus 178 ~s~~~~~~L~~~gaVGdi~~~ffd~~G~~v~~~~~~r~i~~~l~~l~~~~~~i~va~G~~Ka~Ai~aal~g~~------- 250 (266)
T 3efb_A 178 YGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIGALRGKY------- 250 (266)
T ss_dssp SCHHHHHHHHHTTCCEEETTEEECTTSCBCCCTTGGGBCBCCHHHHHTSSEEEEECCCSCSSCHHHHHHHTTS-------
T ss_pred CCHHHHHHHHHCCcEEEEecccccCCCCCCCcchhcceecCCHHHHhCCCCEEEEecChHHHHHHHHHHhcCC-------
Confidence 1110 00000 111211 1 22 36899999999999999999999999999999999853
Q ss_pred cccccccCCeEEEEecHHHHhcc
Q 024509 237 ARMAQPTNGKLVWFLDKPAASKL 259 (266)
Q Consensus 237 as~l~~~~~~~~~~~D~~Aa~~l 259 (266)
-+ +.++|+.+|..|
T Consensus 251 --------~~-~LITDe~tA~~l 264 (266)
T 3efb_A 251 --------IN-CLVTNSSTAELL 264 (266)
T ss_dssp --------CS-EEEEEHHHHHHH
T ss_pred --------CC-EEEeCHHHHHHH
Confidence 12 357899988765
No 24
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0
Probab=99.30 E-value=2.4e-12 Score=113.45 Aligned_cols=199 Identities=12% Similarity=0.025 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHHH
Q 024509 20 EELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEG 99 (266)
Q Consensus 20 ~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ 99 (266)
+++++++|+++. +.++ +..+|++++|+|+..+++.+.. .++.++.|+.+.- -++.+++.++...+.+.
T Consensus 39 ~~lg~aaA~~L~----~~l~--~~~vIGv~wG~Tl~~v~~~l~~-----~~~~~~~~V~l~G-G~~~~~~~~~~~~i~~~ 106 (267)
T 3kv1_A 39 KQVAALVSSYLN----NNLQ--EGMAVAVGQGQNVAAVADHAGI-----VTQRNARFVSAIG-GTHRSGDIINADHICRR 106 (267)
T ss_dssp HHHHHHHHHHHH----HHCC--TTCEEEECCSHHHHHHHHCCCC-----CCCCCCEEEESBC-BCC----CCCHHHHHHH
T ss_pred HHHHHHHHHHHH----HhCC--CCCEEEECchHHHHHHHHhccc-----cCCCCCEEEeCCC-CCCCCccccCHHHHHHH
Confidence 455566666655 4553 3369999999999888876643 4668899998887 34556666777778888
Q ss_pred hcCCCCCCCCCeEeCCCCCCHHH-----HHHHHHHHHHHhhhhccccccCCCCCCceeEEEeccCCCCceeccCC-----
Q 024509 100 LLSKVPIVPSHVHSINDSLSAEE-----AADEYEFDIRQLVKTRMVCVSDISDCPKFDLILLGMGSDGHVASLFP----- 169 (266)
Q Consensus 100 ll~~~~i~~~~v~~~~~~~d~~~-----~a~~y~~~i~~~~~~~~~~~~~~~~~~~~Dl~lLG~G~DGHiAslfP----- 169 (266)
|-++++.....+|.|..-.+++. ....|++.++.. .+.|++++|||..+--++++-
T Consensus 107 lA~~~~~~~~~l~~P~~~~~~~~~~~l~~~~~i~~vl~~~--------------~~aDiai~GIG~~~~~s~l~~~g~~~ 172 (267)
T 3kv1_A 107 LAKKYGGSSETLYAPAYVNDPSLRSAFMEHATIKETLSQA--------------RKAEFALVGIGDMDENSHMVKLGFFT 172 (267)
T ss_dssp HHHHHTCEEECCCSBSBCSSHHHHHHHHTSHHHHHHHHHH--------------HTCSEEEEEEEEHHHHTHHHHTTSSC
T ss_pred HHHHhCCeEEEEecCcccCCHHHHHHHHhChHHHHHHHHH--------------HhCCEEEEeCCCCCCccHHHHhCCCC
Confidence 88888877667776665555431 124555555542 479999999998773222221
Q ss_pred CCC--cc-cccc--ceE-E-eecCC--CCCC----CCeEEeCHHHHhcccceEEEEeCccHHHHHHHHHhCCCCCCcccc
Q 024509 170 NHS--VL-DVKN--QWV-S-FITDS--PKPP----PERITFTLPVINSASIVVVVVTGESKAEAVHLAIDDLGPNCPSLP 236 (266)
Q Consensus 170 ~~~--~~-~~~~--~~v-~-~~~~~--~~~p----~~riTlt~~~i~~a~~iill~~G~~K~~~l~~~l~~~~~~~~~~P 236 (266)
... .+ .+.. ..+ . .+.+. ..++ .+.|||++..|++++++++++.|.+|+++++.++.++.
T Consensus 173 ~~~~~~L~~~~gaVGdi~g~rffD~~G~~v~~~~~~~~i~~~l~~l~~~~~~i~va~G~~K~~ai~~al~~~~------- 245 (267)
T 3kv1_A 173 PKEFVEARLNDGIVGDIGGFDFFKLDGTDADTLMRGRVIGLEMEDLRQIPNVVAMASESRKALSIMGALRTGV------- 245 (267)
T ss_dssp HHHHHHHHHTTCEEEEETTTEEEETTSCBCCCGGGGGBCBCCHHHHHTSSEEEEECCCGGGHHHHHHHHHTSC-------
T ss_pred HHHHHHHHHhcCCEEEEcchHhhcCCCCEeccccccceeecCHHHHcCCCcEEEEecChHHHHHHHHHHhcCC-------
Confidence 110 11 1100 001 0 01122 1122 36899999999999999999999999999999999853
Q ss_pred cccccccCCeEEEEecHHHHhccc
Q 024509 237 ARMAQPTNGKLVWFLDKPAASKLQ 260 (266)
Q Consensus 237 as~l~~~~~~~~~~~D~~Aa~~l~ 260 (266)
-+ +.++|+.+|..|-
T Consensus 246 --------~~-~LITDe~tA~~lL 260 (267)
T 3kv1_A 246 --------ID-VLATSVSCAMALL 260 (267)
T ss_dssp --------CS-EEEEEHHHHHHHH
T ss_pred --------CC-EEEeCHHHHHHHH
Confidence 13 3578999988763
No 25
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=68.11 E-value=6.1 Score=32.16 Aligned_cols=46 Identities=9% Similarity=-0.061 Sum_probs=30.0
Q ss_pred HHHhcCcEEEEEcCC-ChHHHHHHHhcccCCCCCCCCcceEEecceee
Q 024509 37 SVKERGVFAIALSGG-SLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 37 ~i~~~~~~~l~lsGG-stp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (266)
.+.+...+.|+|+|| -|...+++.+.....++ ..+.|.+++.+.+|
T Consensus 93 ~~~~~sda~IvlPGG~GTl~El~e~lt~~q~g~-~~kPvvll~~~g~~ 139 (191)
T 1t35_A 93 KMSELADGFISMPGGFGTYEELFEVLCWAQIGI-HQKPIGLYNVNGYF 139 (191)
T ss_dssp HHHHHCSEEEECSCCHHHHHHHHHHHHTTSCSS-CCCCEEEECGGGTT
T ss_pred HHHHHCCEEEEeCCCccHHHHHHHHHHHHHhCC-CCCCEEEecCCccc
Confidence 345667899999999 44455565554322233 23678888888887
No 26
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=48.37 E-value=16 Score=31.23 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcC---cEEEEEcCC
Q 024509 18 SVEELSTNLADYIADLSEASVKERG---VFAIALSGG 51 (266)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~~---~~~l~lsGG 51 (266)
++++.... +...|++.+++.| .++++||||
T Consensus 18 ~~~~~i~~----~~~~L~~~l~~~g~~~~vvvglSGG 50 (275)
T 1wxi_A 18 NAEEEIRR----SVDFLKSYLQTYPFIKSLVLGISGG 50 (275)
T ss_dssp CHHHHHHH----HHHHHHHHHHHSTTCCEEEEECCSS
T ss_pred CHHHHHHH----HHHHHHHHHHHcCCCCCEEEECcCc
Confidence 44444444 4455566776656 899999999
No 27
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=42.49 E-value=31 Score=27.85 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcC-cEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHHHhcCCCCCC
Q 024509 31 ADLSEASVKERG-VFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKVPIV 107 (266)
Q Consensus 31 ~~~i~~~i~~~~-~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll~~~~i~ 107 (266)
.+.++.++++.+ +..+++|||..=..+..++... . .++.++++|.-+-+ + ....++++ +.+.++++
T Consensus 33 ~~~l~~~~~~~~~~v~Va~SGGkDS~vLL~ll~~~---~---~~v~~v~vd~g~~~---~-e~~~~v~~-~~~~~gi~ 99 (215)
T 1sur_A 33 EGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQI---R---PDIPVILTDTGYLF---P-ETYRFIDE-LTDKLKLN 99 (215)
T ss_dssp HHHHHHHHHHCCSEEEEECCCCTTHHHHHHHHHHH---S---TTCEEEEEECSCBC---H-HHHHHHHH-HHHHTTCE
T ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHh---C---CCCeEEEeeCCCCC---H-HHHHHHHH-HHHHhCCc
Confidence 345566777765 8999999997655666665542 1 35778888864421 2 23444443 44445554
No 28
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=41.63 E-value=38 Score=29.29 Aligned_cols=45 Identities=11% Similarity=0.010 Sum_probs=27.9
Q ss_pred HHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceee
Q 024509 38 VKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 38 i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (266)
+...+++.+++|||..=..+..++.... ....++++..+.+|.-.
T Consensus 21 ~~~~~~vlva~SGG~DS~~Ll~ll~~~~-~~~g~~~v~av~vd~g~ 65 (317)
T 1wy5_A 21 FSGERRVLIAFSGGVDSVVLTDVLLKLK-NYFSLKEVALAHFNHML 65 (317)
T ss_dssp CSSCCEEEEECCSSHHHHHHHHHHHHST-TTTTCSEEEEEEEECCS
T ss_pred CCCCCEEEEEecchHHHHHHHHHHHHHH-HHcCCCEEEEEEEECCC
Confidence 4556789999999955434444443211 23456558888888654
No 29
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=41.53 E-value=22 Score=29.44 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=27.1
Q ss_pred HHHhcCcEEEEEcCC-ChHHHHHHHhcccCCCCCCCCcceEEecceee
Q 024509 37 SVKERGVFAIALSGG-SLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 37 ~i~~~~~~~l~lsGG-stp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (266)
.+.+...+.|+|+|| -|...+++.+.....+++..+.|.+++.+ +|
T Consensus 127 ~m~~~sda~IvlpGG~GTL~El~e~lt~~qlg~~~~kPvvll~~~-~w 173 (217)
T 1wek_A 127 LFVRYAVGFVFLPGGFGTLDELSEVLVLLQTEKVHRFPVFLLDRG-YW 173 (217)
T ss_dssp HHHHTEEEEEECSCCHHHHHHHHHHHHHHHTTSSCCCCEEEECHH-HH
T ss_pred HHHHhCCEEEEeCCCCcHHHHHHHHHHHHhhCCCCCCCEEEeCcc-cc
Confidence 345667889999999 34455555443211133445667777664 65
No 30
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=40.96 E-value=46 Score=28.81 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHHHhcCCCCCC
Q 024509 29 YIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKVPIV 107 (266)
Q Consensus 29 ~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll~~~~i~ 107 (266)
.+.+.|++.+. .++..+++|||..=..+..++... +. .++..+.+|....+. .....+++.+-+.++++
T Consensus 9 ~~~~~ir~~v~-~~kvlvalSGGvDSsvla~ll~~~----~g-~~v~av~vd~g~~~~----~e~~~~~~~~a~~lgi~ 77 (308)
T 2dpl_A 9 EKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKA----IG-DRLHAVFVNTGFLRK----GEPEFVVKTFRDEFGMN 77 (308)
T ss_dssp HHHHHHHHHHT-TSCEEEECCSSHHHHHHHHHHHHH----HG-GGEEEEEEECSCCCT----THHHHHHHHHTTTTCCE
T ss_pred HHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHHHh----hC-CCEEEEEEcCCCCCh----HHHHHHHHHHHHHcCCc
Confidence 34444555554 478999999994422333333221 12 367778888654332 22334555555567764
No 31
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=40.30 E-value=29 Score=29.24 Aligned_cols=50 Identities=8% Similarity=-0.157 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceee
Q 024509 31 ADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 31 ~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (266)
.+.++.++++-++..+++|||..=..+..++...... + .++.++++|.-+
T Consensus 31 ~~~l~~a~~~~~~v~va~SGGkDS~vLL~ll~~~~~~--~-~~i~vv~iDtg~ 80 (261)
T 2oq2_A 31 QEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEK--Y-YMPELLFIDTLH 80 (261)
T ss_dssp HHHHHHHHHHCSSEEEECCCCHHHHHHHHHHHHHTTT--S-CCCEEEEECCSC
T ss_pred HHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCcc--C-CCeeEEEecCCC
Confidence 4556677878889999999997655666666542111 1 357788888755
No 32
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=38.43 E-value=15 Score=30.08 Aligned_cols=79 Identities=18% Similarity=0.110 Sum_probs=41.3
Q ss_pred HhcCcEEEEEcCC-ChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHHHhcCCCCCCCCCeEeCCCC
Q 024509 39 KERGVFAIALSGG-SLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKVPIVPSHVHSINDS 117 (266)
Q Consensus 39 ~~~~~~~l~lsGG-stp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~ 117 (266)
.+...+.|+|+|| -|...+++.+.....+ +.-+.|.+++.+.+| +....+++ ++.+.--+.++....+.-.
T Consensus 115 ~~~sda~IalPGG~GTldEl~e~lt~~qlg-~~~kPvvlln~~gfw------~~l~~~l~-~~~~~Gfi~~~~~~~i~~~ 186 (199)
T 3qua_A 115 EHRSDAFIALPGGIGTLEEFFEAWTAGYLG-MHDKPLILLDPFGHY------DGLLTWLR-GLVPTGYVSQRAMDSLVVV 186 (199)
T ss_dssp HHHCSEEEECSCCHHHHHHHHHHHHHHHTT-SCCCCEEEECTTSTT------HHHHHHHH-HTTTTTSSCHHHHHTSEEE
T ss_pred HHhcCccEEeCCCccHHHHHHHHHHHHHhc-cCCCCEEEEcCCccc------hHHHHHHH-HHHHCCCCCHHHCCeEEEe
Confidence 4557899999999 4455555544311111 223568888888877 23445554 4444322443332222222
Q ss_pred CCHHHHHH
Q 024509 118 LSAEEAAD 125 (266)
Q Consensus 118 ~d~~~~a~ 125 (266)
.|+++..+
T Consensus 187 d~~~e~~~ 194 (199)
T 3qua_A 187 DNVEAALE 194 (199)
T ss_dssp SSHHHHHH
T ss_pred CCHHHHHH
Confidence 35665444
No 33
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=38.22 E-value=24 Score=29.99 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCC
Q 024509 18 SVEELSTNLADYIADLSEASVKER--GVFAIALSGG 51 (266)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~--~~~~l~lsGG 51 (266)
+.++..+.+... |++.+++. +.+.++||||
T Consensus 17 ~~~~~i~~~~~~----L~d~v~~~g~~~vvvgLSGG 48 (271)
T 1kqp_A 17 DPKQEIEDRVNF----LKQYVKKTGAKGFVLGISGG 48 (271)
T ss_dssp CHHHHHHHHHHH----HHHHHHHHTCCEEEEECCSS
T ss_pred CHHHHHHHHHHH----HHHHHHHcCCCCEEEECCCC
Confidence 445444444444 44555443 5789999999
No 34
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=36.87 E-value=31 Score=28.99 Aligned_cols=32 Identities=38% Similarity=0.503 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCCCh
Q 024509 18 SVEELSTNLADYIADLSEASVKER--GVFAIALSGGSL 53 (266)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~--~~~~l~lsGGst 53 (266)
+.++..+.+.+.|.+ .+.+. +++.++||||-.
T Consensus 8 ~~~~~~~~l~~~l~~----~v~~~~~~~vvv~lSGGiD 41 (249)
T 3fiu_A 8 SPKEYSQKLVNWLSD----SCMNYPAEGFVIGLSGGID 41 (249)
T ss_dssp CHHHHHHHHHHHHHH----HHHTTTCSEEEEECCSSHH
T ss_pred CHHHHHHHHHHHHHH----HHHHhCCCCEEEEecCcHH
Confidence 566666555555554 45433 568999999943
No 35
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=36.47 E-value=14 Score=30.73 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=28.8
Q ss_pred HHHhcCcEEEEEcCC-ChHHHHHHHhcccCCCCCCCCcceEEecceee
Q 024509 37 SVKERGVFAIALSGG-SLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 37 ~i~~~~~~~l~lsGG-stp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (266)
.+.+...+.|+|+|| -|...+++.+..... .+..+-|.+++.+.+|
T Consensus 101 ~~~~~sda~I~lpGG~GTLdElfE~lt~~ql-g~~~kPvvll~~~gfw 147 (216)
T 1ydh_A 101 AMAQEAEAFIALPGGYGTMEELLEMITWSQL-GIHKKTVGLLNVDGYY 147 (216)
T ss_dssp HHHHHCSEEEECSCSHHHHHHHHHHHHHHHH-TSCCCEEEEECGGGTT
T ss_pred HHHHhCCEEEEeCCCccHHHHHHHHHHHHHh-cccCCCEEEecCCccc
Confidence 344567899999999 444555554321100 1345678888888887
No 36
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=35.94 E-value=57 Score=27.32 Aligned_cols=56 Identities=20% Similarity=0.436 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHh--cCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEeccee
Q 024509 18 SVEELSTNLADYIADLSEASVKE--RGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADER 82 (266)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~--~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr 82 (266)
+.+++.+++...|.+ .+++ .+++.++||||-.=..+..++... +. .+++.+.+|-.
T Consensus 5 ~~~~~~~~l~~~l~d----~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~----~g-~~v~av~~~~~ 62 (249)
T 3p52_A 5 DWQKITEKMCDFIQE----KVKNSQSQGVVLGLSGGIDSALVATLCKRA----LK-ENVFALLMPTQ 62 (249)
T ss_dssp CHHHHHHHHHHHHHH----HHHTSSCSEEEEECCSSHHHHHHHHHHHHH----HT-TSEEEEECCSC
T ss_pred CHHHHHHHHHHHHHH----HHHHhCCCCEEEEcCCCHHHHHHHHHHHHH----cC-CcEEEEEecCC
Confidence 556666666555554 5554 357899999994322333333221 12 36777777754
No 37
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=35.69 E-value=40 Score=28.40 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEeccee
Q 024509 19 VEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADER 82 (266)
Q Consensus 19 ~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr 82 (266)
.+++.+.+.+.|.+.+.. ...+++.++||||-.=..+..++... .. .++..+.+|-.
T Consensus 5 ~~~~~~~l~~~l~~~v~~--~~~~~vvv~lSGGiDSsv~~~l~~~~----~~-~~v~av~~~~~ 61 (268)
T 1xng_A 5 YQKLIVYLCDFLEKEVQK--RGFKKVVYGLSGGLDSAVVGVLCQKV----FK-ENAHALLMPSS 61 (268)
T ss_dssp HHHHHHHHHHHHHHHHHH--TTCCCEEEECCSSHHHHHHHHHHHHH----HG-GGEEEEECCCS
T ss_pred HHHHHHHHHHHHHHHHHH--hCCCCEEEEccCcHHHHHHHHHHHHh----CC-CCEEEEEeCCC
Confidence 455555555555544332 13457899999994322333333221 01 35777777744
No 38
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=33.35 E-value=91 Score=25.11 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=38.3
Q ss_pred cEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCh------------------HHHHHHHhcccCCCCCCCC
Q 024509 11 GELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSL------------------IGLMGKLCEAPYNKTVDWA 72 (266)
Q Consensus 11 ~~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGst------------------p~~l~~ll~~~~~~~i~w~ 72 (266)
.-+++.++. +++....+.+.+ .....+--...+.||.. |..+..++.. ..++++
T Consensus 104 ~~lil~Pt~-~L~~Q~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~---~~~~~~ 175 (242)
T 3fe2_A 104 ICLVLAPTR-ELAQQVQQVAAE----YCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC---GKTNLR 175 (242)
T ss_dssp SEEEECSSH-HHHHHHHHHHHH----HHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH---TSCCCT
T ss_pred EEEEEeCcH-HHHHHHHHHHHH----HHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc---CCCCcc
Confidence 356777776 555566655544 33333444555666643 4444444433 346788
Q ss_pred cceEEecceee
Q 024509 73 KWYIFWADERV 83 (266)
Q Consensus 73 ~v~~f~~DEr~ 83 (266)
++.++-+||-.
T Consensus 176 ~~~~lViDEah 186 (242)
T 3fe2_A 176 RTTYLVLDEAD 186 (242)
T ss_dssp TCCEEEETTHH
T ss_pred cccEEEEeCHH
Confidence 99999999954
No 39
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=31.93 E-value=35 Score=29.30 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCC
Q 024509 18 SVEELSTNLADYIADLSEASVKER--GVFAIALSGG 51 (266)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~--~~~~l~lsGG 51 (266)
++++..+...+.|. +.+++. +.++|+||||
T Consensus 19 ~~~~~i~~~v~~L~----d~l~~~g~~~vvvglSGG 50 (279)
T 3q4g_A 19 DPQFEIERRVAFIK----RKLTEARYKSLVLGISGG 50 (279)
T ss_dssp CHHHHHHHHHHHHH----HHHHHHTCCEEEEECCSS
T ss_pred CHHHHHHHHHHHHH----HHHHHcCCCCEEEEccCC
Confidence 44554544445554 455444 5789999999
No 40
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=31.19 E-value=55 Score=27.25 Aligned_cols=46 Identities=9% Similarity=-0.011 Sum_probs=31.1
Q ss_pred HHHHHHHHhcC-cEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceee
Q 024509 32 DLSEASVKERG-VFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 32 ~~i~~~i~~~~-~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (266)
+.++.++++-+ ++.+++|||..=..+..++.... .++.++++|--+
T Consensus 35 ~~l~~a~~~~~~~v~va~SGG~DS~vLL~ll~~~~------~~v~vv~idtg~ 81 (252)
T 2o8v_A 35 GRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIR------PDIPVILTDTGY 81 (252)
T ss_dssp HHHHHHHTTSCSCEEEECCCSTTHHHHHHHHHHHS------TTCEEEECCCSC
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhC------CCCeEEEecCCC
Confidence 44556776655 89999999976555666665421 357888888644
No 41
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=28.74 E-value=43 Score=23.41 Aligned_cols=24 Identities=17% Similarity=0.459 Sum_probs=18.6
Q ss_pred CCCceeEEEeccCCCCceeccCCCCCc
Q 024509 147 DCPKFDLILLGMGSDGHVASLFPNHSV 173 (266)
Q Consensus 147 ~~~~~Dl~lLG~G~DGHiAslfP~~~~ 173 (266)
+.|++.+=+ -+|||.+..|||...
T Consensus 36 G~PPY~VRw---~ddGHe~lv~PGPDa 59 (83)
T 2a7y_A 36 GSPPYVVRW---LVNGHETTVYPGSDA 59 (83)
T ss_dssp SCSCEEEEE---TTTTEEEEECCCSSC
T ss_pred CCCCEEEEe---cCCCcEEEEecCCCe
Confidence 456777755 489999999999754
No 42
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=28.02 E-value=61 Score=27.91 Aligned_cols=30 Identities=17% Similarity=0.406 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCC
Q 024509 18 SVEELSTNLADYIADLSEASVKER--GVFAIALSGG 51 (266)
Q Consensus 18 ~~~~l~~~~a~~i~~~i~~~i~~~--~~~~l~lsGG 51 (266)
+.++..+.....|.+ .+++. +.++|+||||
T Consensus 25 ~~~~~i~~~v~~L~d----~l~~~g~~~vvvglSGG 56 (285)
T 3dpi_A 25 DARDEAERRIGFVAD----YLRTAGLRACVLGISGG 56 (285)
T ss_dssp CHHHHHHHHHHHHHH----HHHHHTCCEEEEECCSS
T ss_pred CHHHHHHHHHHHHHH----HHHHcCCCcEEEEccCC
Confidence 455555555555554 45443 5789999999
No 43
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=27.80 E-value=21 Score=28.90 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=27.6
Q ss_pred HhcCcEEEEEcCC-ChHHHHHHHhcccCCCCCCCCcceEEecceee
Q 024509 39 KERGVFAIALSGG-SLIGLMGKLCEAPYNKTVDWAKWYIFWADERV 83 (266)
Q Consensus 39 ~~~~~~~l~lsGG-stp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~ 83 (266)
.+...+.|+|+|| -|...+++.+....-. ..-+.|.+++.+.||
T Consensus 106 ~~~sda~IalPGG~GTLdElfe~lt~~qlg-~~~kPvvlln~~gfw 150 (189)
T 3sbx_A 106 EDRANAFITLPGGVGTLDELLDVWTEGYLG-MHDKSIVVLDPWGHF 150 (189)
T ss_dssp HHHCSEEEECSCCHHHHHHHHHHHHHHHTT-SCCCCEEEECTTCTT
T ss_pred HHHCCEEEEeCCCcchHHHHHHHHHHHHhc-ccCCCEEEecCCccc
Confidence 3457899999999 4555666544311111 223568888888887
No 44
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=27.37 E-value=97 Score=26.25 Aligned_cols=46 Identities=11% Similarity=-0.070 Sum_probs=28.9
Q ss_pred ChhhHHHHHHHHhcCCCCCCCCCeEeCCCCCCHHHHHHHHHHHHHH
Q 024509 88 HSDSNYKLAKEGLLSKVPIVPSHVHSINDSLSAEEAADEYEFDIRQ 133 (266)
Q Consensus 88 ~~~Sn~~~l~~~ll~~~~i~~~~v~~~~~~~d~~~~a~~y~~~i~~ 133 (266)
+..|-...|++.+.+..++|++.|..=+...+..+.+..-.+.+++
T Consensus 94 ~~~sEA~~m~~~l~~~~GVp~~~IllE~~S~nT~ENa~~s~~ll~~ 139 (266)
T 3ca8_A 94 TGRAEATILADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLNQ 139 (266)
T ss_dssp TTSCHHHHHHHHHHHTTCCCGGGEEEECCCCSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHEEeCCCCccHHHHHHHHHHHHHh
Confidence 3446667777777665588888877655555655555544445543
No 45
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=24.95 E-value=3.5e+02 Score=25.08 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHHHhcCCCCCC
Q 024509 31 ADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKVPIV 107 (266)
Q Consensus 31 ~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll~~~~i~ 107 (266)
.+.+++.+.. +++.+++|||..=..+..++... +. .+++.+.+|....+.+ -.....+.|-+.++++
T Consensus 221 i~~i~~~v~~-~kvlvalSGGvDSsvla~ll~~~----~G-~~v~av~vd~g~~~~~----e~~~~~~~~a~~lgi~ 287 (527)
T 3tqi_A 221 IRDIQEKVGK-EQVIVGLSGGVDSAVTATLVHKA----IG-DQLVCVLVDTGLLRLN----EVDEVLNVFQKHLGAK 287 (527)
T ss_dssp HHHHHHHHTT-SCEEEECTTTHHHHHHHHHHHHH----HG-GGEEEEEECCSCSCTT----HHHHHHHHHTTSSCCE
T ss_pred HHHHHHhcCC-CeEEEEEecCcCHHHHHHHHHHH----hC-CeEEEEEeccCCCChh----HHHHHHHHHHHHcCCc
Confidence 3444455544 78999999994422333333221 11 3677788887554222 1233344566677764
No 46
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=24.95 E-value=63 Score=26.83 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEeccee
Q 024509 19 VEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADER 82 (266)
Q Consensus 19 ~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr 82 (266)
.+++.+.+.+.|. +. ..+++.++||||-.=..+..++... ..=.+++.+.+|-.
T Consensus 6 ~~~~~~~l~~~i~----~~--~~~~vvv~lSGGiDSs~~~~l~~~~----~g~~~v~av~~~~~ 59 (257)
T 2e18_A 6 YDKVIERILEFIR----EK--GNNGVVIGISGGVDSATVAYLATKA----LGKEKVLGLIMPYF 59 (257)
T ss_dssp HHHHHHHHHHHHH----HH--CTTCEEEECCSSHHHHHHHHHHHHH----HCGGGEEEEECCSS
T ss_pred HHHHHHHHHHHHH----Hh--CCCcEEEEecCCHHHHHHHHHHHHh----cCCCcEEEEEeCCC
Confidence 4455544444443 33 4568999999994322332333221 01035777777754
No 47
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=24.50 E-value=1.2e+02 Score=28.15 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHHHHHhcCCCCCC
Q 024509 30 IADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLAKEGLLSKVPIV 107 (266)
Q Consensus 30 i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l~~~ll~~~~i~ 107 (266)
+.+.|++.+.. +++.++||||-.=..+..++... +. .++..+.+|-...+.+ -...+++.|-+.++++
T Consensus 217 ~~~~ir~~v~~-~~vvvalSGGvDSsv~a~ll~~a----~G-~~v~av~v~~g~~~~~----e~~~~~~~la~~lgi~ 284 (525)
T 1gpm_A 217 AVARIREQVGD-DKVILGLSGGVDSSVTAMLLHRA----IG-KNLTCVFVDNGLLRLN----EAEQVLDMFGDHFGLN 284 (525)
T ss_dssp HHHHHHHHHTT-CEEEEECCSSHHHHHHHHHHHHH----HG-GGEEEEEEECSCSCTT----HHHHHHHHHTTTTCCC
T ss_pred hhhhhhhhhcc-cceEEEecCCCCHHHHHHHHHHH----hC-CCEEEEEEeCCCCCch----HHHHHHHHHHHHhCCc
Confidence 34444555544 78999999994322233333221 11 4677788886543322 1234445566667764
No 48
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=23.01 E-value=1.4e+02 Score=23.51 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=34.1
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCC------------------hHHHHHHHhcccCCCCCCCCc
Q 024509 12 ELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGS------------------LIGLMGKLCEAPYNKTVDWAK 73 (266)
Q Consensus 12 ~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGs------------------tp~~l~~ll~~~~~~~i~w~~ 73 (266)
-+++.++. +++....+.+.+.....-...+.-...+.||. ||..+..++.. ..++.++
T Consensus 75 ~lil~Pt~-~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~ 150 (219)
T 1q0u_A 75 AVITAPTR-ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE---QALDVHT 150 (219)
T ss_dssp EEEECSSH-HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT---TCCCGGG
T ss_pred EEEEcCcH-HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc---CCCCcCc
Confidence 45666765 56666666554322111001123344455654 34444444433 3456677
Q ss_pred ceEEecceee
Q 024509 74 WYIFWADERV 83 (266)
Q Consensus 74 v~~f~~DEr~ 83 (266)
+.++-+||-.
T Consensus 151 ~~~lViDEah 160 (219)
T 1q0u_A 151 AHILVVDEAD 160 (219)
T ss_dssp CCEEEECSHH
T ss_pred ceEEEEcCch
Confidence 7788888853
No 49
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=22.88 E-value=92 Score=28.89 Aligned_cols=75 Identities=17% Similarity=0.121 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCCCChhhHHHHH
Q 024509 17 ESVEELSTNLADYIADLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAKNHSDSNYKLA 96 (266)
Q Consensus 17 ~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~~~~~Sn~~~l 96 (266)
.+.++..+.+-+.+.+.++..+....+..+.||||-.=..+..++... . .+++.|.+.= +..++....+.+
T Consensus 214 ~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~~~----~--~~~~~~t~~~---~~~~E~~~A~~v 284 (503)
T 1q15_A 214 LPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRH----F--KKLNTYSIGT---ELSNEFEFSQQV 284 (503)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTTT----C--SEEEEEEEEE---TTBCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHHHh----C--CCcEEEEEeC---CCccHHHHHHHH
Confidence 356777777777777777777767778889999994433444454432 1 3455554431 122344455555
Q ss_pred HHHh
Q 024509 97 KEGL 100 (266)
Q Consensus 97 ~~~l 100 (266)
-++|
T Consensus 285 A~~l 288 (503)
T 1q15_A 285 ADAL 288 (503)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 50
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=20.96 E-value=78 Score=27.68 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCCChH
Q 024509 24 TNLADYIADLSEASVKERGVFAIALSGGSLI 54 (266)
Q Consensus 24 ~~~a~~i~~~i~~~i~~~~~~~l~lsGGstp 54 (266)
+.+++.+.+.++++.++.+.-.|+|+||-.-
T Consensus 231 ~~l~~~l~~~~~~a~~~~g~~~vvlsGGVa~ 261 (334)
T 3eno_A 231 ETAFAMLVEVLERALYVSGKDEILMAGGVAL 261 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEcCCHHH
Confidence 3466677777777777778779999999554
No 51
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=20.66 E-value=2.4e+02 Score=22.09 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=35.1
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEcCCCh------------------HHHHHHHhcccCCCCCCCCc
Q 024509 12 ELRIHESVEELSTNLADYIADLSEASVKERGVFAIALSGGSL------------------IGLMGKLCEAPYNKTVDWAK 73 (266)
Q Consensus 12 ~~~v~~~~~~l~~~~a~~i~~~i~~~i~~~~~~~l~lsGGst------------------p~~l~~ll~~~~~~~i~w~~ 73 (266)
-+++.++. +++....+.+.+ ....+.-...+.||.. |..+..++.. ..++.++
T Consensus 97 ~lil~Pt~-~L~~q~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~---~~~~~~~ 167 (228)
T 3iuy_A 97 MLVLTPTR-ELALHVEAECSK-----YSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN---NSVNLRS 167 (228)
T ss_dssp EEEECSSH-HHHHHHHHHHHH-----HCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT---TCCCCTT
T ss_pred EEEEeCCH-HHHHHHHHHHHH-----hcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc---CCcCccc
Confidence 46677775 566666665543 2233444555666643 4444444333 3567788
Q ss_pred ceEEecceee
Q 024509 74 WYIFWADERV 83 (266)
Q Consensus 74 v~~f~~DEr~ 83 (266)
+.++-+||-.
T Consensus 168 ~~~lViDEah 177 (228)
T 3iuy_A 168 ITYLVIDEAD 177 (228)
T ss_dssp CCEEEECCHH
T ss_pred ceEEEEECHH
Confidence 8999999954
No 52
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=20.64 E-value=1.9e+02 Score=26.64 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCcEEEEEcCCChHHHHHHHhcccCCCCCCCCcceEEecceeecCC
Q 024509 32 DLSEASVKERGVFAIALSGGSLIGLMGKLCEAPYNKTVDWAKWYIFWADERVVAK 86 (266)
Q Consensus 32 ~~i~~~i~~~~~~~l~lsGGstp~~l~~ll~~~~~~~i~w~~v~~f~~DEr~vp~ 86 (266)
+.+++.+. .+++.+++|||..=..+..++... . .++..+.+|....+.
T Consensus 201 ~~ir~~~~-~~kvvvalSGGvDSsvla~ll~~~-----g-~~v~av~vd~g~~~~ 248 (503)
T 2ywb_A 201 REVRERAG-KDRVLLAVSGGVDSSTLALLLAKA-----G-VDHLAVFVDHGLLRL 248 (503)
T ss_dssp HHHHHHHT-TSEEEEEECSSHHHHHHHHHHHHH-----T-CEEEEEEEECSCSCT
T ss_pred Hhhhhhcc-CccEEEEecCCcchHHHHHHHHHc-----C-CeEEEEEEeCCCCCh
Confidence 34444453 378999999995433333444332 1 467788888765543
No 53
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=20.21 E-value=87 Score=29.66 Aligned_cols=29 Identities=34% Similarity=0.308 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CcEEEEEcCC
Q 024509 19 VEELSTNLADYIADLSEASVKER--GVFAIALSGG 51 (266)
Q Consensus 19 ~~~l~~~~a~~i~~~i~~~i~~~--~~~~l~lsGG 51 (266)
.+++.+.+... |++.+++. +++.++||||
T Consensus 306 ~~~~~~~~~~~----l~~~~~~~g~~~vvvglSGG 336 (590)
T 3n05_A 306 DEEVYSALVVG----LRAYVAKNGFRSVLIGLSGG 336 (590)
T ss_dssp HHHHHHHHHHH----HHHHHHTTTCCCEEEECCSS
T ss_pred HHHHHHHHHHH----HHHHHHHhCCCcEEEEcCCC
Confidence 34444444444 45556554 4789999999
Done!