Query 024511
Match_columns 266
No_of_seqs 255 out of 807
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 3.7E-19 1.3E-23 128.7 3.9 56 57-113 4-59 (60)
2 2d8s_A Cellular modulator of i 99.7 6.4E-17 2.2E-21 123.0 5.0 63 56-118 12-75 (80)
3 2ep4_A Ring finger protein 24; 97.9 1.7E-05 5.7E-10 57.1 5.3 50 57-113 13-64 (74)
4 2kiz_A E3 ubiquitin-protein li 97.9 1.2E-05 4.2E-10 57.0 4.5 53 55-114 10-64 (69)
5 1v87_A Deltex protein 2; ring- 97.7 2.2E-05 7.7E-10 60.9 4.3 51 59-114 25-95 (114)
6 2ect_A Ring finger protein 126 97.7 1.4E-05 4.9E-10 58.0 2.8 53 56-115 12-66 (78)
7 2ecm_A Ring finger and CHY zin 97.7 1.3E-05 4.6E-10 54.2 2.3 49 57-112 3-54 (55)
8 1x4j_A Ring finger protein 38; 97.7 1.6E-05 5.4E-10 57.6 2.3 52 55-113 19-72 (75)
9 2l0b_A E3 ubiquitin-protein li 97.6 2.9E-05 9.8E-10 58.7 3.3 52 55-113 36-89 (91)
10 2ecl_A Ring-box protein 2; RNF 97.5 2.2E-05 7.6E-10 58.3 1.5 27 85-113 50-76 (81)
11 1iym_A EL5; ring-H2 finger, ub 97.5 2.2E-05 7.5E-10 53.2 1.0 48 58-112 4-54 (55)
12 1chc_A Equine herpes virus-1 r 97.5 7.2E-05 2.5E-09 52.7 3.4 49 58-113 4-52 (68)
13 2ct2_A Tripartite motif protei 97.5 0.00011 3.6E-09 54.1 4.4 54 55-113 11-68 (88)
14 2yur_A Retinoblastoma-binding 97.5 5.6E-05 1.9E-09 54.8 2.8 51 56-112 12-63 (74)
15 2ea6_A Ring finger protein 4; 97.4 4.2E-05 1.4E-09 53.7 1.2 52 55-113 11-68 (69)
16 2ecn_A Ring finger protein 141 97.4 5.6E-05 1.9E-09 53.7 1.8 50 56-114 12-61 (70)
17 2d8t_A Dactylidin, ring finger 97.4 4.2E-05 1.4E-09 54.9 1.0 51 56-114 12-62 (71)
18 2ecv_A Tripartite motif-contai 97.3 0.0003 1E-08 50.9 5.2 53 56-114 16-72 (85)
19 2ysl_A Tripartite motif-contai 97.3 0.00011 3.6E-09 52.5 2.7 53 55-113 16-69 (73)
20 2ecw_A Tripartite motif-contai 97.3 0.00024 8.2E-09 51.4 4.5 52 56-113 16-71 (85)
21 2csy_A Zinc finger protein 183 97.3 0.00021 7.1E-09 52.3 3.9 49 56-112 12-60 (81)
22 2ecy_A TNF receptor-associated 97.3 0.00014 4.9E-09 51.2 2.9 52 55-113 11-62 (66)
23 2djb_A Polycomb group ring fin 97.2 0.00017 5.9E-09 51.7 3.2 51 56-114 12-63 (72)
24 2ct0_A Non-SMC element 1 homol 97.2 0.00017 5.8E-09 53.9 3.0 52 57-114 13-65 (74)
25 3ng2_A RNF4, snurf, ring finge 97.2 9.9E-05 3.4E-09 52.2 1.2 52 56-114 7-64 (71)
26 3ztg_A E3 ubiquitin-protein li 97.1 0.00028 9.7E-09 52.6 3.6 52 55-112 9-61 (92)
27 2xeu_A Ring finger protein 4; 97.1 7E-05 2.4E-09 51.7 0.0 49 58-113 2-56 (64)
28 1t1h_A Gspef-atpub14, armadill 97.1 0.00028 9.5E-09 51.1 3.1 52 55-113 4-55 (78)
29 3dpl_R Ring-box protein 1; ubi 97.0 0.00023 7.9E-09 56.1 2.2 48 59-113 37-101 (106)
30 2ecj_A Tripartite motif-contai 97.0 0.00042 1.5E-08 47.0 2.9 46 56-107 12-58 (58)
31 2ysj_A Tripartite motif-contai 97.0 0.00064 2.2E-08 47.3 3.7 47 55-107 16-63 (63)
32 2egp_A Tripartite motif-contai 96.8 0.00024 8.1E-09 51.3 0.5 52 56-113 9-65 (79)
33 3lrq_A E3 ubiquitin-protein li 96.7 0.00058 2E-08 52.3 1.9 50 57-113 20-70 (100)
34 1g25_A CDK-activating kinase a 96.6 0.0011 3.7E-08 46.5 2.9 49 59-113 3-55 (65)
35 1jm7_A BRCA1, breast cancer ty 96.5 0.0015 5.3E-08 49.9 3.3 50 59-114 21-71 (112)
36 4a0k_B E3 ubiquitin-protein li 96.5 0.00049 1.7E-08 55.5 0.3 48 59-113 48-112 (117)
37 1e4u_A Transcriptional repress 96.5 0.0018 6E-08 48.2 3.3 53 57-113 9-62 (78)
38 3fl2_A E3 ubiquitin-protein li 96.5 0.0015 5E-08 51.5 3.0 49 58-113 51-99 (124)
39 2y43_A E3 ubiquitin-protein li 96.4 0.00082 2.8E-08 50.9 1.3 48 58-113 21-69 (99)
40 4ap4_A E3 ubiquitin ligase RNF 96.3 0.00055 1.9E-08 53.3 -0.2 51 57-114 5-61 (133)
41 4ayc_A E3 ubiquitin-protein li 96.3 0.00091 3.1E-08 54.0 0.9 47 59-113 53-99 (138)
42 2ckl_B Ubiquitin ligase protei 96.3 0.0014 4.8E-08 54.1 1.9 50 57-113 52-102 (165)
43 2ckl_A Polycomb group ring fin 96.0 0.0014 4.9E-08 50.4 0.8 49 57-113 13-62 (108)
44 1z6u_A NP95-like ring finger p 96.0 0.0028 9.7E-08 52.3 2.3 50 58-114 77-126 (150)
45 3hct_A TNF receptor-associated 95.9 0.0029 9.8E-08 49.6 2.2 53 55-114 14-66 (118)
46 3k1l_B Fancl; UBC, ring, RWD, 95.9 0.0029 9.8E-08 60.2 2.4 58 55-115 304-375 (381)
47 1rmd_A RAG1; V(D)J recombinati 95.8 0.002 6.7E-08 50.1 0.7 51 57-114 21-71 (116)
48 2y1n_A E3 ubiquitin-protein li 95.5 0.0055 1.9E-07 58.6 2.4 50 58-114 331-380 (389)
49 4ap4_A E3 ubiquitin ligase RNF 95.0 0.0047 1.6E-07 47.9 0.3 52 56-114 69-126 (133)
50 3l11_A E3 ubiquitin-protein li 94.9 0.003 1E-07 49.0 -1.0 50 57-113 13-62 (115)
51 2c2l_A CHIP, carboxy terminus 94.2 0.023 8E-07 49.2 2.9 50 57-113 206-255 (281)
52 2kr4_A Ubiquitin conjugation f 94.1 0.044 1.5E-06 40.8 3.8 50 56-113 11-60 (85)
53 2vje_B MDM4 protein; proto-onc 93.9 0.017 5.7E-07 40.8 1.1 50 56-112 4-55 (63)
54 1jm7_B BARD1, BRCA1-associated 93.9 0.013 4.4E-07 45.8 0.5 47 57-113 20-67 (117)
55 2vje_A E3 ubiquitin-protein li 93.7 0.023 8E-07 40.1 1.6 47 58-112 7-56 (64)
56 4ic3_A E3 ubiquitin-protein li 93.4 0.013 4.3E-07 42.5 -0.3 44 58-113 23-67 (74)
57 3hcs_A TNF receptor-associated 93.0 0.04 1.4E-06 45.4 2.2 53 55-114 14-66 (170)
58 2yu4_A E3 SUMO-protein ligase 93.0 0.065 2.2E-06 40.4 3.1 51 54-110 2-59 (94)
59 1bor_A Transcription factor PM 92.7 0.024 8.1E-07 38.8 0.3 46 57-113 4-49 (56)
60 3knv_A TNF receptor-associated 92.6 0.017 6E-07 47.1 -0.6 51 55-112 27-77 (141)
61 2kre_A Ubiquitin conjugation f 92.5 0.082 2.8E-06 40.7 3.1 50 56-113 26-75 (100)
62 3nw0_A Non-structural maintena 92.2 0.076 2.6E-06 47.2 3.0 52 57-114 178-230 (238)
63 1wgm_A Ubiquitin conjugation f 91.5 0.12 4.2E-06 39.6 3.1 50 57-113 20-69 (98)
64 1wim_A KIAA0161 protein; ring 91.4 0.078 2.7E-06 39.6 1.9 50 57-111 3-62 (94)
65 2f42_A STIP1 homology and U-bo 91.3 0.092 3.1E-06 45.0 2.5 51 56-113 103-153 (179)
66 2ea5_A Cell growth regulator w 91.0 0.19 6.6E-06 35.9 3.6 47 55-113 11-58 (68)
67 2ecg_A Baculoviral IAP repeat- 90.5 0.11 3.8E-06 37.3 1.9 44 58-113 24-68 (75)
68 2lri_C Autoimmune regulator; Z 84.8 0.28 9.6E-06 35.4 1.1 53 53-111 6-60 (66)
69 3t6p_A Baculoviral IAP repeat- 83.6 0.15 5E-06 47.8 -1.2 45 57-113 293-338 (345)
70 3htk_C E3 SUMO-protein ligase 79.3 0.85 2.9E-05 41.6 2.3 53 55-113 177-232 (267)
71 2yho_A E3 ubiquitin-protein li 77.5 0.45 1.5E-05 34.8 -0.1 44 59-114 18-62 (79)
72 2bay_A PRE-mRNA splicing facto 76.7 0.98 3.4E-05 31.6 1.5 46 60-113 4-50 (61)
73 1weu_A Inhibitor of growth fam 67.4 2.5 8.5E-05 32.4 2.0 54 53-112 30-87 (91)
74 1weo_A Cellulose synthase, cat 63.5 12 0.0004 29.1 5.0 54 57-113 14-70 (93)
75 2ku3_A Bromodomain-containing 61.7 1 3.4E-05 32.9 -1.2 54 55-110 12-66 (71)
76 2jwa_A Receptor tyrosine-prote 60.1 13 0.00046 25.0 4.3 30 208-238 13-42 (44)
77 2ysm_A Myeloid/lymphoid or mix 56.7 1.6 5.3E-05 33.7 -1.0 52 54-108 2-55 (111)
78 1wen_A Inhibitor of growth fam 55.5 2.3 7.8E-05 30.9 -0.2 52 54-111 11-66 (71)
79 2k16_A Transcription initiatio 54.1 1.1 3.9E-05 32.2 -2.0 53 57-112 16-70 (75)
80 2l43_A N-teminal domain from h 54.1 1.9 6.6E-05 32.5 -0.8 56 55-112 21-77 (88)
81 1f62_A Transcription factor WS 51.7 2.4 8.3E-05 28.2 -0.5 46 61-109 2-49 (51)
82 1jb0_I Photosystem 1 reaction 42.1 22 0.00075 23.3 2.9 34 199-232 3-36 (38)
83 2l5u_A Chromodomain-helicase-D 39.4 6.7 0.00023 27.3 0.2 49 56-110 8-58 (61)
84 2vnf_A ING 4, P29ING4, inhibit 36.9 1.4 5E-05 30.8 -3.7 49 55-109 6-58 (60)
85 2ri7_A Nucleosome-remodeling f 36.2 5.4 0.00019 32.7 -0.9 52 56-111 5-60 (174)
86 1p1p_A AA-conotoxin PIVA; neur 33.6 15 0.00051 21.9 1.0 16 72-87 8-23 (26)
87 1wew_A DNA-binding family prot 32.4 32 0.0011 24.8 2.9 53 54-111 11-73 (78)
88 1wep_A PHF8; structural genomi 31.3 29 0.001 25.0 2.5 53 57-113 10-66 (79)
89 2lbm_A Transcriptional regulat 31.2 22 0.00074 29.3 2.0 47 56-108 60-115 (142)
90 3u5n_A E3 ubiquitin-protein li 29.7 3.7 0.00013 35.0 -3.1 49 58-112 6-56 (207)
91 2yt5_A Metal-response element- 29.1 4.5 0.00015 28.2 -2.2 52 56-110 3-61 (66)
92 2vpb_A Hpygo1, pygopus homolog 28.1 18 0.00063 25.6 0.9 34 56-92 5-40 (65)
93 2lv9_A Histone-lysine N-methyl 28.0 9.3 0.00032 29.1 -0.7 50 55-108 24-74 (98)
94 2e6r_A Jumonji/ARID domain-con 27.8 3.7 0.00013 31.1 -3.0 51 57-110 14-66 (92)
95 2g6q_A Inhibitor of growth pro 27.4 2.7 9.2E-05 29.8 -3.6 49 55-109 7-59 (62)
96 2ko5_A Ring finger protein Z; 27.2 19 0.00066 28.1 0.9 52 55-115 24-75 (99)
97 1wem_A Death associated transc 27.0 22 0.00075 25.4 1.2 52 58-113 15-73 (76)
98 2yql_A PHD finger protein 21A; 25.9 3.8 0.00013 28.0 -3.0 48 56-109 6-55 (56)
99 3v43_A Histone acetyltransfera 25.6 24 0.00083 27.1 1.3 34 58-94 4-43 (112)
100 1znf_A 31ST zinc finger from X 23.8 26 0.00089 18.0 0.8 12 102-113 2-13 (27)
101 3ql9_A Transcriptional regulat 23.8 28 0.00095 28.2 1.3 48 55-108 53-109 (129)
102 1wev_A Riken cDNA 1110020M19; 23.7 6.1 0.00021 29.6 -2.5 53 58-113 15-75 (88)
103 2jmi_A Protein YNG1, ING1 homo 23.3 5.6 0.00019 30.4 -2.8 53 54-110 21-76 (90)
104 3kv5_D JMJC domain-containing 23.3 9.8 0.00034 37.0 -1.7 55 56-114 34-92 (488)
105 1ard_A Yeast transcription fac 22.3 29 0.00098 18.1 0.8 12 102-113 3-14 (29)
106 4gne_A Histone-lysine N-methyl 21.9 15 0.0005 28.8 -0.7 49 54-108 10-60 (107)
107 2lvu_A Zinc finger and BTB dom 26.0 21 0.00072 18.5 0.0 13 102-114 3-15 (26)
108 2kvh_A Zinc finger and BTB dom 20.5 28 0.00095 18.1 0.5 12 102-113 4-15 (27)
109 3o36_A Transcription intermedi 20.5 8.9 0.0003 31.9 -2.4 49 58-112 3-53 (184)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.75 E-value=3.7e-19 Score=128.73 Aligned_cols=56 Identities=34% Similarity=0.777 Sum_probs=50.8
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
++...||||+++.+ ++++.||+|+|++||||+.||++|++++++.+||+|+++|+.
T Consensus 4 ~~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45679999998754 468999999999999999999999999999999999999975
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.4e-17 Score=122.99 Aligned_cols=63 Identities=35% Similarity=0.855 Sum_probs=54.5
Q ss_pred CCCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccCccCC
Q 024511 56 PSKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAP 118 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~-d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~y~~p 118 (266)
+.+...||||+++.+ +++++.||+|+|+++++|+.||++|++.+++.+|++|+++|......+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~ 75 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLS 75 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccC
Confidence 455678999998754 467899999999999999999999999999899999999998765433
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=1.7e-05 Score=57.13 Aligned_cols=50 Identities=24% Similarity=0.590 Sum_probs=38.5
Q ss_pred CCCCeeeEeccCCCCCC--cccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 57 SKLVECRICHEEDEDSN--MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~--li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.....|.||++...+.. ...||. +..|..|+.+|++.+. .|++|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCccccc
Confidence 45678999999865332 234764 6799999999998764 89999998864
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.88 E-value=1.2e-05 Score=57.05 Aligned_cols=53 Identities=26% Similarity=0.627 Sum_probs=40.8
Q ss_pred CCCCCCeeeEeccCCCC--CCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024511 55 SPSKLVECRICHEEDED--SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d--~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
.......|.||++.-.+ .....||. +..|..|+.+|++.+. .|++|+..+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccCc
Confidence 44567789999887542 34567875 5789999999998754 699999998754
No 5
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.74 E-value=2.2e-05 Score=60.93 Aligned_cols=51 Identities=24% Similarity=0.480 Sum_probs=38.7
Q ss_pred CCeeeEeccCCCCCC--------------c---ccccccCCCcccccHHHHHHHHHh---cCCccccccccccccC
Q 024511 59 LVECRICHEEDEDSN--------------M---EIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNPG 114 (266)
Q Consensus 59 ~~~CRIC~ee~~d~~--------------l---i~PC~C~GslkyvH~~CL~~W~~~---k~~~~CEiCk~~y~~~ 114 (266)
...|-||++.-.+.. . ..||. +..|..||.+|+.. +....|++|+..|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 358999998743211 1 56776 68999999999975 4567999999999754
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.73 E-value=1.4e-05 Score=58.03 Aligned_cols=53 Identities=23% Similarity=0.679 Sum_probs=40.3
Q ss_pred CCCCCeeeEeccCCCCC--CcccccccCCCcccccHHHHHHHHHhcCCccccccccccccCc
Q 024511 56 PSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGY 115 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~--~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~y 115 (266)
......|.||++.-.+. ....||. +..|..|+.+|++.+ ..|++|+.++...-
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCcc
Confidence 34567899999886432 2346765 679999999999654 58999999987653
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.71 E-value=1.3e-05 Score=54.19 Aligned_cols=49 Identities=27% Similarity=0.590 Sum_probs=38.6
Q ss_pred CCCCeeeEeccCCCC---CCcccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024511 57 SKLVECRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d---~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
.....|.||++.-.+ .....||. ...|..|+.+|++.+ ..|++|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 345689999987532 34678875 689999999999887 68999998764
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.67 E-value=1.6e-05 Score=57.60 Aligned_cols=52 Identities=33% Similarity=0.732 Sum_probs=40.3
Q ss_pred CCCCCCeeeEeccCCCCC--CcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 55 SPSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~--~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
...+...|-||++...+. ....||. +..|..|+.+|++.+ ..|++|++++.+
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 345677999999886432 2567875 679999999999875 489999998865
No 9
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.63 E-value=2.9e-05 Score=58.75 Aligned_cols=52 Identities=33% Similarity=0.816 Sum_probs=40.2
Q ss_pred CCCCCCeeeEeccCCCCC--CcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 55 SPSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~--~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
..+....|-||+++..++ ....||. +..|..|+.+|++.+ ..|++|++++.+
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCCC
Confidence 345678999999875432 3457865 689999999999754 489999998864
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=2.2e-05 Score=58.33 Aligned_cols=27 Identities=19% Similarity=0.720 Sum_probs=23.7
Q ss_pred ccccHHHHHHHHHhcCCcccccccccccc
Q 024511 85 KYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 85 kyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
+..|..||.+|++.+ .+|++|++++..
T Consensus 50 H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~ 76 (81)
T 2ecl_A 50 HSFHNCCMSLWVKQN--NRCPLCQQDWVV 76 (81)
T ss_dssp CEEEHHHHHHHTTTC--CBCTTTCCBCCE
T ss_pred CccChHHHHHHHHhC--CCCCCcCCCcch
Confidence 789999999999876 489999999864
No 11
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.51 E-value=2.2e-05 Score=53.24 Aligned_cols=48 Identities=35% Similarity=0.750 Sum_probs=36.3
Q ss_pred CCCeeeEeccCCCC--CCcccc-cccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024511 58 KLVECRICHEEDED--SNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 58 ~~~~CRIC~ee~~d--~~li~P-C~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
+...|-||+++-.+ .....| |. +..|..|+.+|++.+ ..|++|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~~--~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGSH--STCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTTC--CSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHcC--CcCcCCCCEeE
Confidence 45689999988543 234555 54 679999999999764 58999998764
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.47 E-value=7.2e-05 Score=52.74 Aligned_cols=49 Identities=27% Similarity=0.722 Sum_probs=39.2
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 58 ~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
....|.||++...+.....||. +..|..|+.+|++.+ ..|++|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 4568999998876544678875 578999999999765 589999998863
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=0.00011 Score=54.08 Aligned_cols=54 Identities=19% Similarity=0.489 Sum_probs=42.2
Q ss_pred CCCCCCeeeEeccCCCC---CCcccccccCCCcccccHHHHHHHHHhc-CCcccccccccccc
Q 024511 55 SPSKLVECRICHEEDED---SNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNP 113 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d---~~li~PC~C~GslkyvH~~CL~~W~~~k-~~~~CEiCk~~y~~ 113 (266)
...+...|-||++...+ .+...||. +..|..|+.+|++.+ +...|++|++.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34556789999988643 15567874 688999999999876 46799999998865
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.46 E-value=5.6e-05 Score=54.83 Aligned_cols=51 Identities=24% Similarity=0.505 Sum_probs=41.5
Q ss_pred CCCCCeeeEeccCCCCCCcccc-cccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024511 56 PSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~P-C~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
..+...|.||++...+ +...| |. +..|+.|+.+|++.++...|++|++++.
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTD-AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTT-CEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhC-CeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3456789999887653 66777 65 6789999999999888789999999754
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=4.2e-05 Score=53.67 Aligned_cols=52 Identities=25% Similarity=0.579 Sum_probs=39.1
Q ss_pred CCCCCCeeeEeccCCCC----C--CcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 55 SPSKLVECRICHEEDED----S--NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d----~--~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
...+...|-||++...+ . ....||. +..|..|+.+|++.+ ..|++|++++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHHC--SSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHcC--CCCCCCCCccCc
Confidence 34567789999987422 1 1567775 689999999999874 589999998763
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=5.6e-05 Score=53.72 Aligned_cols=50 Identities=30% Similarity=0.773 Sum_probs=40.6
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024511 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
..+...|.||++...+ ...||. +..|..|+.+|+. ....|++|++++...
T Consensus 12 ~~~~~~C~IC~~~~~~--~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD--LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCCSSSCCSCCS--EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTCC
T ss_pred CCCCCCCeeCCcCccC--cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccCC
Confidence 3456789999998765 778885 6799999999997 467899999988743
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=4.2e-05 Score=54.86 Aligned_cols=51 Identities=22% Similarity=0.488 Sum_probs=40.3
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024511 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
..+...|.||++...+ +...||. +..|..|+.+|+..+ ..|++|+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH-PVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSS-EEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCC-CEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHh
Confidence 3456789999987643 5667875 679999999999754 6899999998754
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=0.0003 Score=50.93 Aligned_cols=53 Identities=26% Similarity=0.645 Sum_probs=41.9
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh----cCCccccccccccccC
Q 024511 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE----KGDTTCEICREQYNPG 114 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~----k~~~~CEiCk~~y~~~ 114 (266)
..+...|.||++...+ +...||. +..|..|+.+|++. ++...|++|+..+...
T Consensus 16 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ-PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCCSS-CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred ccCCCCCCCCCcccCC-ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 3456789999988654 5566875 57899999999987 3578999999998753
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=0.00011 Score=52.46 Aligned_cols=53 Identities=21% Similarity=0.434 Sum_probs=41.6
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh-cCCcccccccccccc
Q 024511 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE-KGDTTCEICREQYNP 113 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~-k~~~~CEiCk~~y~~ 113 (266)
...+...|.||++...+ +...||. +..|..|+.+|++. ++...|++|++++..
T Consensus 16 ~~~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSS-EEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCC-eEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34567899999987653 5556775 67999999999985 456799999998864
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.29 E-value=0.00024 Score=51.43 Aligned_cols=52 Identities=25% Similarity=0.535 Sum_probs=41.6
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhc----CCcccccccccccc
Q 024511 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK----GDTTCEICREQYNP 113 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k----~~~~CEiCk~~y~~ 113 (266)
..+...|.||++...+ +...||. +..|..|+.+|+..+ +...|++|+..+..
T Consensus 16 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE-PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSS-CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCc-ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3456789999887653 5677875 678999999999884 47899999999875
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27 E-value=0.00021 Score=52.33 Aligned_cols=49 Identities=18% Similarity=0.467 Sum_probs=39.5
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024511 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
......|.||++...+ +...||. +..|..|+.+|++. ...|++|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN-PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS-EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC-eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 3456789999888654 6678876 57899999999975 458999999986
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=0.00014 Score=51.22 Aligned_cols=52 Identities=15% Similarity=0.363 Sum_probs=40.1
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
...+...|.||++...+ +...||. +..|..|+.+|++ ++...|++|+.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCS-PKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESS-CCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcC-eeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 34567889999877543 5556776 5689999999997 455689999998864
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.00017 Score=51.72 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=39.8
Q ss_pred CCCCCeeeEeccCCCCCCcc-cccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024511 56 PSKLVECRICHEEDEDSNME-IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li-~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
..+...|.||++...+ +.. .||. +..|..|+.+|++. ...|++|+.++...
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLID-ATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSS-CEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHC-cCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCcc
Confidence 3456789999887654 444 4876 57899999999976 46899999998753
No 24
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.22 E-value=0.00017 Score=53.90 Aligned_cols=52 Identities=21% Similarity=0.584 Sum_probs=39.6
Q ss_pred CCCCeeeEeccCCCCCCccccc-ccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024511 57 SKLVECRICHEEDEDSNMEIPC-SCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~PC-~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
+....|-||++.-..+. -| .| -.-.|..||.+|++.++..+|++|++++...
T Consensus 13 ~~i~~C~IC~~~i~~g~---~C~~C---~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ---SCETC---GIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSE---ECSSS---CCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCC---ccCCC---CchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 45678999988764321 22 44 2568999999999988778999999998743
No 25
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.17 E-value=9.9e-05 Score=52.23 Aligned_cols=52 Identities=25% Similarity=0.558 Sum_probs=39.8
Q ss_pred CCCCCeeeEeccCCCC------CCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024511 56 PSKLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d------~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
+++...|-||++.-.+ .....||. +..|..|+.+|++.+ ..|++|++++...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccChh
Confidence 4567789999987421 12567776 679999999999876 4899999998753
No 26
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.14 E-value=0.00028 Score=52.59 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=42.5
Q ss_pred CCCCCCeeeEeccCCCCCCcccc-cccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024511 55 SPSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~P-C~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
...+...|-||++.-. .+...| |. +..++.||.+|+..++...|++|+..+.
T Consensus 9 ~~~~~~~C~IC~~~~~-~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMT-DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECS-SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhc-CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4456789999998765 367778 64 5688999999999888889999999974
No 27
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.12 E-value=7e-05 Score=51.74 Aligned_cols=49 Identities=22% Similarity=0.566 Sum_probs=37.6
Q ss_pred CCCeeeEeccCCCC------CCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 58 KLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 58 ~~~~CRIC~ee~~d------~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
+...|-||++.-.+ .....||. +..|..|+.+|++. ...|++|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 45689999887422 12567776 67999999999987 4589999998874
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.10 E-value=0.00028 Score=51.08 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=41.0
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
...+...|-||++.-.+ +...||. +..++.|+.+|++. +..+|++|+.++..
T Consensus 4 ~~~~~~~C~IC~~~~~~-Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKD-PVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCSS-EEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSS
T ss_pred CCcccCCCCCccccccC-CEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCCh
Confidence 34567889999887653 6677875 67899999999974 46789999998864
No 29
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.03 E-value=0.00023 Score=56.14 Aligned_cols=48 Identities=21% Similarity=0.488 Sum_probs=35.1
Q ss_pred CCeeeEeccCCCCC-----------------CcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 59 LVECRICHEEDEDS-----------------NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 59 ~~~CRIC~ee~~d~-----------------~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
...|-||++.-++. ....||. +..|..|+.+|+.. ..+|++|+++|..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCccee
Confidence 45688887764321 1235665 78999999999976 4689999999863
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.00042 Score=47.00 Aligned_cols=46 Identities=24% Similarity=0.683 Sum_probs=35.9
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh-cCCcccccc
Q 024511 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE-KGDTTCEIC 107 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~-k~~~~CEiC 107 (266)
..+...|.||++...+ +...||. +..|..|+.+|++. ++...|++|
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE-PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS-CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc-cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999988754 5667875 56899999999875 467789987
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.00064 Score=47.26 Aligned_cols=47 Identities=23% Similarity=0.500 Sum_probs=36.7
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhc-CCcccccc
Q 024511 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEIC 107 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k-~~~~CEiC 107 (266)
...+...|.||++...+ +...||. +..|+.|+.+|++.+ +...|++|
T Consensus 16 ~~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS-CEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC-eEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567899999987653 6666875 678999999999864 46789988
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.82 E-value=0.00024 Score=51.25 Aligned_cols=52 Identities=25% Similarity=0.570 Sum_probs=41.4
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhc-----CCcccccccccccc
Q 024511 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-----GDTTCEICREQYNP 113 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k-----~~~~CEiCk~~y~~ 113 (266)
..+...|.||++...+ +...||. +..+..|+.+|++.+ +...|++|+.++..
T Consensus 9 ~~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTE-PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSS-CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCC-eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3567889999988653 5667875 678999999999873 47899999999875
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.69 E-value=0.00058 Score=52.30 Aligned_cols=50 Identities=30% Similarity=0.663 Sum_probs=40.8
Q ss_pred CCCCeeeEeccCCCCCCcc-cccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 57 SKLVECRICHEEDEDSNME-IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li-~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.+...|-||++.-.+ +.. .||. +..|..|+.+|++.++ ..|++|+.++..
T Consensus 20 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD-ARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCCccCCccccC-ccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 456789999988754 555 7876 6789999999999875 689999999864
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.63 E-value=0.0011 Score=46.46 Aligned_cols=49 Identities=18% Similarity=0.387 Sum_probs=36.6
Q ss_pred CCeeeEecc-CCCCC--C-cccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 59 LVECRICHE-EDEDS--N-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 59 ~~~CRIC~e-e~~d~--~-li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
+..|-||++ ...+. . +..||. +..+..|+.+|+.. +...|++|+..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 467999998 32221 1 457886 57899999999864 45789999999864
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.52 E-value=0.0015 Score=49.91 Aligned_cols=50 Identities=24% Similarity=0.629 Sum_probs=39.6
Q ss_pred CCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhc-CCccccccccccccC
Q 024511 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNPG 114 (266)
Q Consensus 59 ~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k-~~~~CEiCk~~y~~~ 114 (266)
...|.||++.-. .+...||. +..|..|+.+|+..+ +...|++|+..+...
T Consensus 21 ~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIK-EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCS-SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhc-CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 458999988764 35667875 678999999999864 457899999988753
No 36
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.49 E-value=0.00049 Score=55.50 Aligned_cols=48 Identities=21% Similarity=0.527 Sum_probs=0.4
Q ss_pred CCeeeEeccCCCCC----------------C-cccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 59 LVECRICHEEDEDS----------------N-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 59 ~~~CRIC~ee~~d~----------------~-li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
...|-||+++-++. . +..||. ...|..|+.+|++.+ ..|++|+++|..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWEF 112 (117)
T ss_dssp C-----------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeeee
Confidence 35799998774321 1 123554 689999999999874 589999999864
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.48 E-value=0.0018 Score=48.23 Aligned_cols=53 Identities=32% Similarity=0.638 Sum_probs=41.9
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~-d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
++...|-||++.-. +.....||.|. +.+++.|+.+|.+. +...|++|+.+|..
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred ccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 45678999999764 34567888883 56899999998754 56799999999975
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.46 E-value=0.0015 Score=51.53 Aligned_cols=49 Identities=18% Similarity=0.425 Sum_probs=39.0
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 58 ~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
+...|-||++.-.+ +...||. +..|+.|+.+|+. .+...|++|+..+..
T Consensus 51 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR-PITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC-cEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 45689999987653 6667875 5689999999998 345689999999975
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.43 E-value=0.00082 Score=50.89 Aligned_cols=48 Identities=29% Similarity=0.555 Sum_probs=37.9
Q ss_pred CCCeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 58 KLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 58 ~~~~CRIC~ee~~d~~li~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
+...|.||++.-.+ +... ||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI-AMIIPQCS-----HNYCSLCIRKFLSYK--TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHTTC--CBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC-cCEECCCC-----CHhhHHHHHHHHHCC--CCCCCCCCcCCh
Confidence 45689999988654 4443 776 678999999999854 689999998874
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.34 E-value=0.00055 Score=53.30 Aligned_cols=51 Identities=24% Similarity=0.518 Sum_probs=39.3
Q ss_pred CCCCeeeEeccCCCC------CCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024511 57 SKLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d------~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
++...|-||++...+ .....||. +..|..|+.+|++.+. .|++|++.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTCS--BCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhCC--CCCCCCCcCccc
Confidence 456789999987432 12667876 6799999999997654 899999998753
No 41
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.31 E-value=0.00091 Score=53.97 Aligned_cols=47 Identities=26% Similarity=0.685 Sum_probs=37.3
Q ss_pred CCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 59 ~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
...|.||++...+ +...||. +..|..|+.+|+..+ ..|++|+.++..
T Consensus 53 ~~~C~iC~~~~~~-~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE-AVTLNCA-----HSFCSYCINEWMKRK--IECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS-EEEETTS-----CEEEHHHHHHHTTTC--SBCTTTCCBCCC
T ss_pred cCCCcccCcccCC-ceECCCC-----CCccHHHHHHHHHcC--CcCCCCCCcCCC
Confidence 4579999987653 6677875 679999999999754 579999998753
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.27 E-value=0.0014 Score=54.13 Aligned_cols=50 Identities=20% Similarity=0.491 Sum_probs=38.5
Q ss_pred CCCCeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 57 SKLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.+...|-||++.-.+ +... ||. +..|..|+.+|+.. +...|++|+..+..
T Consensus 52 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKN-TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhC-cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCCC
Confidence 345689999888654 4443 776 67899999999985 35789999998853
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.04 E-value=0.0014 Score=50.37 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=38.7
Q ss_pred CCCCeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 57 SKLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.+...|.||++.-.+ +... ||. +..|..|+.+|++.+ ..|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID-ATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhC-cCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 346689999887654 5554 876 578999999999765 789999998864
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.96 E-value=0.0028 Score=52.30 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=39.8
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024511 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 58 ~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
+...|.||++.-.+ +...||. ...++.|+.+|+.. +...|++|+..+...
T Consensus 77 ~~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ-PVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC-CEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 45689999887653 6667886 56899999999985 446899999998754
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=95.95 E-value=0.0029 Score=49.60 Aligned_cols=53 Identities=19% Similarity=0.441 Sum_probs=41.3
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024511 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
...+...|.||++.-.+ +...||. ...+..|+.+|++.++. .|++|+.++...
T Consensus 14 ~~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALRE-AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhcC-eEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCHH
Confidence 34556789999977653 5666765 67899999999987654 899999998753
No 46
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.91 E-value=0.0029 Score=60.23 Aligned_cols=58 Identities=21% Similarity=0.666 Sum_probs=42.5
Q ss_pred CCCCCCeeeEeccCCCC-CCc-ccccc---cCCCcccccHHHHHHHHHhcCC---------ccccccccccccCc
Q 024511 55 SPSKLVECRICHEEDED-SNM-EIPCS---CCGSLKYAHRKCVQRWCNEKGD---------TTCEICREQYNPGY 115 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d-~~l-i~PC~---C~GslkyvH~~CL~~W~~~k~~---------~~CEiCk~~y~~~y 115 (266)
..+....|-||++.-.+ +.+ ...|. |+ +..|..||.+|++..++ ..|+.|+++....|
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 34567899999988643 332 34564 53 68999999999987532 58999999887655
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=95.83 E-value=0.002 Score=50.13 Aligned_cols=51 Identities=27% Similarity=0.548 Sum_probs=40.1
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024511 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
.+...|-||++...+ +...||. +..+..|+.+|++.+ ...|++|+.++...
T Consensus 21 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 21 VKSISCQICEHILAD-PVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHHTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCGG
T ss_pred cCCCCCCCCCcHhcC-cEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCHh
Confidence 345789999887653 6667775 678999999999875 35799999998754
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.46 E-value=0.0055 Score=58.61 Aligned_cols=50 Identities=24% Similarity=0.634 Sum_probs=39.6
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024511 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 58 ~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
....|.||++... .+...||. +..|..|+.+|+.. +...|++|+.++...
T Consensus 331 ~~~~C~ICle~~~-~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDK-DVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBC-CEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCC-CeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 3479999988764 36778987 35699999999984 456899999998753
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=94.97 E-value=0.0047 Score=47.92 Aligned_cols=52 Identities=23% Similarity=0.535 Sum_probs=38.7
Q ss_pred CCCCCeeeEeccCCCC----CC--cccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024511 56 PSKLVECRICHEEDED----SN--MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d----~~--li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
.++...|-||++...+ .. ...||. ...|..|+.+|++.+ ..|++|+..+...
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCChh
Confidence 3556789999877421 12 455664 679999999999875 4899999998753
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=94.91 E-value=0.003 Score=48.99 Aligned_cols=50 Identities=22% Similarity=0.539 Sum_probs=39.3
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.+...|-||++.-. .+...||. +..+..|+.+|++. +...|++|++.+..
T Consensus 13 ~~~~~C~iC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV-EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS-SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC-ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 44578999998765 36667876 67999999999964 35789999999863
No 51
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.18 E-value=0.023 Score=49.20 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=39.6
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
...-.|-||++--.+ |.+.||. +-.-+.|+.+|+.+++.. |++|+.++..
T Consensus 206 ~~~~~c~i~~~~~~d-Pv~~~~g-----h~f~~~~i~~~~~~~~~~-cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGHF-NPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSS-EEECSSC-----CEEETTHHHHHHHHTCSS-CTTTCCCCCG
T ss_pred CcccCCcCcCCHhcC-CeECCCC-----CEECHHHHHHHHHHCCCC-CcCCCCCCch
Confidence 456789999887654 8889974 456689999999876644 9999998864
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=94.08 E-value=0.044 Score=40.78 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=39.5
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
..+.-.|-||++--.+ +...||. +-.-+.|+.+|+.. ..+|++|++++..
T Consensus 11 ~p~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD-PVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CchheECcccCchhcC-CeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 3457899999887654 7888864 45779999999985 4689999998864
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=93.88 E-value=0.017 Score=40.76 Aligned_cols=50 Identities=20% Similarity=0.531 Sum_probs=36.4
Q ss_pred CCCCCeeeEeccCCCCCC-cccccccCCCccc-ccHHHHHHHHHhcCCccccccccccc
Q 024511 56 PSKLVECRICHEEDEDSN-MEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~-li~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
.+....|.||++...+.. +..||. +. +=..|+.+|.+.+ ..|++|++++.
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~ 55 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNIIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQ 55 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCC
T ss_pred CCcCCCCcccCCcCCCeEEEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhh
Confidence 345678999998764422 234987 33 5789999998653 68999999875
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.86 E-value=0.013 Score=45.77 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=37.4
Q ss_pred CCCCeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 57 SKLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.+...|.||++.-.+ +... ||. +..++.|+.+|+. ..|++|+..+..
T Consensus 20 ~~~~~C~IC~~~~~~-pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE-PVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCCSS-CBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCSC
T ss_pred hhCCCCCCCChHhhC-ccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCcc
Confidence 356789999887654 5555 875 6788999999987 689999999853
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=93.69 E-value=0.023 Score=40.11 Aligned_cols=47 Identities=17% Similarity=0.526 Sum_probs=34.6
Q ss_pred CCCeeeEeccCCCCCCccc--ccccCCCccc-ccHHHHHHHHHhcCCccccccccccc
Q 024511 58 KLVECRICHEEDEDSNMEI--PCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 58 ~~~~CRIC~ee~~d~~li~--PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
+...|-||++...+ .... ||. +. .=..|+.+|.+. ...|++|++++.
T Consensus 7 ~~~~C~IC~~~~~~-~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN-GCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC-EEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC-EEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchh
Confidence 45689999988754 3333 986 33 347999999964 357999999875
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=93.40 E-value=0.013 Score=42.48 Aligned_cols=44 Identities=18% Similarity=0.561 Sum_probs=35.3
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHhcCCcccccccccccc
Q 024511 58 KLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 58 ~~~~CRIC~ee~~d~~li~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
+...|.||++...+ +...||. +. ....|+.+| ..|++|+..+..
T Consensus 23 ~~~~C~iC~~~~~~-~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA-IVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC-EEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC-EEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 45689999987643 6667986 55 899999999 689999998864
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=93.00 E-value=0.04 Score=45.39 Aligned_cols=53 Identities=19% Similarity=0.441 Sum_probs=40.9
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024511 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
...+.-.|-||++.-.+ +...||. ....+.|+.+|++.++. .|++|+..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALRE-AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcC-cEECCCC-----CHHHHHHHHHHHHhCCC-CCCCCccCcchh
Confidence 44567789999987653 5666664 56899999999987653 899999988753
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.96 E-value=0.065 Score=40.44 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=38.9
Q ss_pred CCCCCCCeeeEeccCCCCCCcccc-cccCCCcccccHHHHHHHHHhc----CCccccc--cccc
Q 024511 54 SSPSKLVECRICHEEDEDSNMEIP-CSCCGSLKYAHRKCVQRWCNEK----GDTTCEI--CREQ 110 (266)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~li~P-C~C~GslkyvH~~CL~~W~~~k----~~~~CEi--Ck~~ 110 (266)
.+....-.|-||++.-.+ +...| |. +-.-+.|+.+|+... +..+|++ |...
T Consensus 2 ~~~~~~~~CPI~~~~~~d-PV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 2 SSGSSGFTCPITKEEMKK-PVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSCSSCCBCTTTCSBCSS-EEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCCCcEeECcCcCchhcC-CEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 344567789999877654 77775 75 457799999999874 4679999 8876
No 59
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.68 E-value=0.024 Score=38.84 Aligned_cols=46 Identities=20% Similarity=0.558 Sum_probs=34.9
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.+...|.||++...+ +...||. +..+..|+.+| ...|++|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC-PKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBC-CSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCC-eEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 356779999887653 6778875 45788898773 5689999998864
No 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=92.57 E-value=0.017 Score=47.08 Aligned_cols=51 Identities=14% Similarity=0.309 Sum_probs=39.1
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024511 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
...+...|-||++.-.+ +...||. ...++.|+.+|++. +...|++|+.+..
T Consensus 27 ~l~~~~~C~IC~~~~~~-pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRR-PFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcC-cEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 44567789999887653 5667776 57899999999964 4568999998753
No 61
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=92.48 E-value=0.082 Score=40.74 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=39.7
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
..+.-.|-||++--.+ |...||. +-.-+.|+.+|+.. ..+|++|+.++..
T Consensus 26 ~p~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD-PVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSS-EEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccC-CeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 3567899999887654 8888864 45779999999974 5689999999874
No 62
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.19 E-value=0.076 Score=47.18 Aligned_cols=52 Identities=21% Similarity=0.574 Sum_probs=39.6
Q ss_pred CCCCeeeEeccCCCCCCcccccc-cCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024511 57 SKLVECRICHEEDEDSNMEIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~PC~-C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
+....|-||.+--..+ .-|. |. .-.|..|+.+|++.++...|+.|+..+...
T Consensus 178 ~~i~~C~iC~~iv~~g---~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG---QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCSSC---EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCCcCcchhhHHhCC---cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3588999997765322 3332 53 579999999999988888999999987643
No 63
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=91.47 E-value=0.12 Score=39.57 Aligned_cols=50 Identities=18% Similarity=0.065 Sum_probs=39.0
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.+.-.|-||++--.+ +.+.||. | +-.-+.|+.+|+.. ..+|++|++++..
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC-CeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 457789999887654 7778865 1 35679999999986 4589999999874
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.44 E-value=0.078 Score=39.62 Aligned_cols=50 Identities=22% Similarity=0.455 Sum_probs=37.5
Q ss_pred CCCCeeeEeccCCCCCCcc--cccccCCCcccccHHHHHHHHHhc---C---Cccccc--ccccc
Q 024511 57 SKLVECRICHEEDEDSNME--IPCSCCGSLKYAHRKCVQRWCNEK---G---DTTCEI--CREQY 111 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li--~PC~C~GslkyvH~~CL~~W~~~k---~---~~~CEi--Ck~~y 111 (266)
++...|-||++...+..+. .||. +..-+.|+.+++..+ + ...|+. |+..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 3466899999886544443 4787 578899999999864 2 479999 99884
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=91.33 E-value=0.092 Score=45.05 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=40.5
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
....-.|-||++--.+ |.+.||. .-.=+.|+.+|+...+. +|++|+.++..
T Consensus 103 ip~~f~CPI~~elm~D-PV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred CcHhhcccCccccCCC-CeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 3467789999887654 7888874 45779999999987655 79999998864
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.02 E-value=0.19 Score=35.90 Aligned_cols=47 Identities=21% Similarity=0.538 Sum_probs=34.5
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHhcCCcccccccccccc
Q 024511 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
...+...|.||++... +....||. +. +-..|+.+ ...|++|+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTV-NWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCC-CCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCC-CEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhc
Confidence 3345678999998764 36778987 23 56678873 3689999998864
No 67
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.50 E-value=0.11 Score=37.34 Aligned_cols=44 Identities=18% Similarity=0.572 Sum_probs=33.4
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHhcCCcccccccccccc
Q 024511 58 KLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 58 ~~~~CRIC~ee~~d~~li~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
+...|.||++... ++...||. +. ....|+.+. ..|++|+.++..
T Consensus 24 ~~~~C~IC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC-CBCCSSSC-----CCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC-CEEEecCC-----CHHHHHHHhhCC------CCCccCCceecC
Confidence 4568999998764 36678986 44 688998643 689999998864
No 68
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=84.81 E-value=0.28 Score=35.43 Aligned_cols=53 Identities=13% Similarity=0.320 Sum_probs=37.1
Q ss_pred CCCCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCcccccccccc
Q 024511 53 GSSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQY 111 (266)
Q Consensus 53 ~~~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~~y 111 (266)
...+.....|.||.+.+ .|+ -|. +=-+..|..||.-.+.+ ++.+.|..|...-
T Consensus 6 ~~~~~~~~~C~vC~~~~---~ll-~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 6 QQNLAPGARCGVCGDGT---DVL-RCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTCCCTTTSCCT---TCE-ECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred ccCCCCCCCcCCCCCCC---eEE-ECC--CCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 44555667899997543 333 343 33479999999877765 5789999997653
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=83.61 E-value=0.15 Score=47.76 Aligned_cols=45 Identities=22% Similarity=0.650 Sum_probs=35.7
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHhcCCcccccccccccc
Q 024511 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.+...|.||++...+ +...||. +. ....|+.+| ..|++|+.++..
T Consensus 293 ~~~~~C~IC~~~~~~-~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS-VVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCC-EEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCc-eEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccC
Confidence 356799999987653 6667987 35 788999988 689999999864
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=79.33 E-value=0.85 Score=41.58 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=40.2
Q ss_pred CCCCCCeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHhcCCccccc--ccccccc
Q 024511 55 SPSKLVECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEI--CREQYNP 113 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEi--Ck~~y~~ 113 (266)
.......|-||++--.+ |... .|. +-.=+.|+.+|+..++...|++ |++.+..
T Consensus 177 ~~~~el~CPIcl~~f~D-PVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 177 GGKIELTCPITCKPYEA-PLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SSBCCSBCTTTSSBCSS-EEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CCceeeECcCccCcccC-CeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 34677889999876643 5443 554 4567899999998877889999 9998864
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=77.50 E-value=0.45 Score=34.83 Aligned_cols=44 Identities=23% Similarity=0.630 Sum_probs=32.8
Q ss_pred CCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHhcCCccccccccccccC
Q 024511 59 LVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 59 ~~~CRIC~ee~~d~~li~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
...|.||++... +....||. +. .=..|+.+| ..|++|+.++...
T Consensus 18 ~~~C~IC~~~~~-~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI-NSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC-CEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccC-cEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 458999988764 36678987 23 457898877 3999999998643
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=76.73 E-value=0.98 Score=31.64 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=32.5
Q ss_pred CeeeEeccCCCCCCccc-ccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 60 VECRICHEEDEDSNMEI-PCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 60 ~~CRIC~ee~~d~~li~-PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
-.|-||++--.+ +.+. +|. .-.=+.|+.+|+++.+ +|+++++++..
T Consensus 4 ~~CpIs~~~m~d-PV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRR-PVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSS-EEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred EEecCCCCCCCC-CEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 357777666543 5555 433 4577999999998765 49999988764
No 73
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.35 E-value=2.5 Score=32.43 Aligned_cols=54 Identities=22% Similarity=0.528 Sum_probs=35.4
Q ss_pred CCCCCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHh--cCCccccccccccc
Q 024511 53 GSSPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (266)
Q Consensus 53 ~~~~~~~~~CRIC~ee~~d~~li~--PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~~y~ 112 (266)
...+.+...| ||...+. +.|+. -|.|. ..|.|..|+. +.. ++.+.|+.|...-+
T Consensus 30 ~~d~~e~~yC-iC~~~~~-g~MI~CD~~dC~--~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 30 PVDPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCSCCCBCS-TTCCBCC-SCCCCCSCSSCS--CCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CcCCCCCcEE-ECCCCCC-CCEeEecCCCCC--CCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 3445677888 9987653 45543 22353 2689999997 433 46899999976543
No 74
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=63.51 E-value=12 Score=29.08 Aligned_cols=54 Identities=24% Similarity=0.568 Sum_probs=38.2
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024511 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~---~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.....|.||-++- .++.+..-|+=.+ --|=+.|++-=++ .++..|+.||++|+-
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~--FPvCrpCyEYErk-eG~q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECG--FPACRPCYEYERR-EGTQNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSC--CCCCHHHHHHHHH-TSCSSCTTTCCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccC--ChhhHHHHHHHHh-ccCccccccCCcccc
Confidence 3567999998773 4566777776222 2377888765544 467899999999974
No 75
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=61.71 E-value=1 Score=32.91 Aligned_cols=54 Identities=20% Similarity=0.388 Sum_probs=34.4
Q ss_pred CCCCCCeeeEeccCC-CCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccc
Q 024511 55 SPSKLVECRICHEED-EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQ 110 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~-~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~ 110 (266)
...+...|.||...+ ++++...-|. +=-+.+|..|+.--..-++.+.|+.|...
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 345667899998775 2223333344 32358999998643334678899988653
No 76
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=60.08 E-value=13 Score=24.98 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=17.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 024511 208 LLILRTIGILLPIYVMVKAFTAIQRRRHQQD 238 (266)
Q Consensus 208 l~~LraagilLp~yim~r~~~~lqr~r~~~~ 238 (266)
.+..-.+| +|-+.++.-.+-.+.||||+++
T Consensus 13 ~Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 13 SIISAVVG-ILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHCSCC
T ss_pred chHHHHHH-HHHHHHHHHHHHhheehhhhhc
Confidence 34455566 3445555556666777777663
No 77
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=56.66 E-value=1.6 Score=33.73 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=32.7
Q ss_pred CCCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCccccccc
Q 024511 54 SSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICR 108 (266)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk 108 (266)
+...+...|.||.+.++.++|+ -| .+=-+..|..||.-.... ++.+.|.-|+
T Consensus 2 s~~~~~~~C~~C~~~g~~~~ll-~C--~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPGDLLDQF-FC--TTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCCCSCBTTTCCCCCTTTSE-EC--SSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCCCcCCCCCCCCcCCe-EC--CCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3445778999998877544453 33 333478999999776542 3455554443
No 78
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=55.53 E-value=2.3 Score=30.93 Aligned_cols=52 Identities=23% Similarity=0.556 Sum_probs=33.8
Q ss_pred CCCCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHh--cCCcccccccccc
Q 024511 54 SSPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQY 111 (266)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~li~--PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~~y 111 (266)
..+.+...| ||...+. +.|+. -|.|. ..+.|..|+. +.. ++.+.|+.|...-
T Consensus 11 ~d~~~~~~C-~C~~~~~-g~MI~CD~~~C~--~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 11 VDPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCTTSCCCS-TTCCCSC-SSEECCSCSSCS--CCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred cCCCCCCEE-ECCCCCC-CCEeEeeCCCCC--CccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345667788 8977653 45553 12243 2699999997 443 4789999996543
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=54.06 E-value=1.1 Score=32.21 Aligned_cols=53 Identities=21% Similarity=0.387 Sum_probs=34.6
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCccccccccccc
Q 024511 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~~y~ 112 (266)
.+...|.||...++...|+. |.+=-.+.|..|+.--... .+.+.|+.|.....
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 44567999977764334543 3333489999998654332 26789999976654
No 80
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=54.06 E-value=1.9 Score=32.53 Aligned_cols=56 Identities=20% Similarity=0.361 Sum_probs=35.6
Q ss_pred CCCCCCeeeEeccCC-CCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024511 55 SPSKLVECRICHEED-EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~-~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
...+...|.||...+ ++.+...-|. +=-..+|..|+.--..-++.+.|..|...-.
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCCccCCCceECccccCccc
Confidence 345678899998775 2223333443 2235789999864334457889999965543
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=51.71 E-value=2.4 Score=28.23 Aligned_cols=46 Identities=26% Similarity=0.606 Sum_probs=29.1
Q ss_pred eeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCcccccccc
Q 024511 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (266)
Q Consensus 61 ~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~ 109 (266)
.|.||...++++.|+ -| .+=-+..|..||.-=+.+ ++.+.|..|..
T Consensus 2 ~C~vC~~~~~~~~ll-~C--d~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLI-LC--DECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCE-EC--TTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEE-EC--CCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888776544444 23 333478999998532322 46788888854
No 82
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=42.11 E-value=22 Score=23.29 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=24.9
Q ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 024511 199 GEYSLTLFTLLILRTIGILLPIYVMVKAFTAIQR 232 (266)
Q Consensus 199 ~~~~~~lftl~~LraagilLp~yim~r~~~~lqr 232 (266)
++|+-+.+--++.+.+|+++|...|+-....+|+
T Consensus 3 g~~aa~~LPsI~VPlVglvfPai~Mallf~yIe~ 36 (38)
T 1jb0_I 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLFLYIEG 36 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHHHHHHC
T ss_pred chhhhhhCChhhHhHHHHHHHHHHHHHHHHhhcc
Confidence 3455555556788999999999999877665553
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=39.39 E-value=6.7 Score=27.34 Aligned_cols=49 Identities=16% Similarity=0.474 Sum_probs=32.4
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHH--hcCCccccccccc
Q 024511 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN--EKGDTTCEICREQ 110 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~--~k~~~~CEiCk~~ 110 (266)
......|.+|...+ .|+. |.+=-+..|..||.--+. .++.+.|..|..+
T Consensus 8 ~~~~~~C~vC~~~g---~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQGG---EIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCCS---SEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCCC---cEEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 34567899997643 3332 334446899999876443 2578999999653
No 84
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=36.88 E-value=1.4 Score=30.85 Aligned_cols=49 Identities=24% Similarity=0.598 Sum_probs=29.9
Q ss_pred CCCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHh--cCCcccccccc
Q 024511 55 SPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~--PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~ 109 (266)
.+++...| ||...+. +.|+. -|.|. ..+.|..|+. +.+ ++.+.|+.|..
T Consensus 6 d~~e~~~C-~C~~~~~-g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 6 DPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ---CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCCEE-ECCCcCC-CCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 44566778 8977653 45543 22243 2689999997 443 46788888854
No 85
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=36.16 E-value=5.4 Score=32.72 Aligned_cols=52 Identities=17% Similarity=0.381 Sum_probs=33.8
Q ss_pred CCCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHH---hcCCcccccccccc
Q 024511 56 PSKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCN---EKGDTTCEICREQY 111 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~-d~~li~PC~C~GslkyvH~~CL~~W~~---~k~~~~CEiCk~~y 111 (266)
..+...| +|....+ ++.|+.=-.| -.|.|..|+.---. ..+...|+.|...-
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C---~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRC---QNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTT---CCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCC---CchhChhhcCCchhhccCccCeecCCCcchh
Confidence 3566789 9987653 4456542234 48999999853222 24689999998654
No 86
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=33.59 E-value=15 Score=21.87 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=12.2
Q ss_pred CCcccccccCCCcccc
Q 024511 72 SNMEIPCSCCGSLKYA 87 (266)
Q Consensus 72 ~~li~PC~C~Gslkyv 87 (266)
+.--+||+|+|.-.|.
T Consensus 8 naachpc~c~~rp~yc 23 (26)
T 1p1p_A 8 NAACHPCSCKDRPSYC 23 (26)
T ss_dssp CSSCCTTTSTTCCGGG
T ss_pred CccccccccCCCCCcc
Confidence 3457899999987764
No 87
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.37 E-value=32 Score=24.84 Aligned_cols=53 Identities=30% Similarity=0.544 Sum_probs=33.5
Q ss_pred CCCCCCCeeeEeccCCCCCCccccc---ccCCCcccccHHHHHHHHHh-------cCCcccccccccc
Q 024511 54 SSPSKLVECRICHEEDEDSNMEIPC---SCCGSLKYAHRKCVQRWCNE-------KGDTTCEICREQY 111 (266)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~li~PC---~C~GslkyvH~~CL~~W~~~-------k~~~~CEiCk~~y 111 (266)
..+.....| ||...++++.|+. | .|. .|.|..|+.-=-.. .....|+.|+..-
T Consensus 11 ~~~~~~~~C-iC~~~~~~g~MI~-CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 11 FQPEIKVRC-VCGNSLETDSMIQ-CEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp SSCCCCCCC-SSCCCCCCSCEEE-CSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred cCCCCCEEe-ECCCcCCCCCEEE-ECCccCC---ccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 344577888 8988765555653 3 354 49999997532221 1367888887543
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.32 E-value=29 Score=25.01 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=34.7
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHh---cCCcccccccccccc
Q 024511 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~-d~~li~PC~C~GslkyvH~~CL~~W~~~---k~~~~CEiCk~~y~~ 113 (266)
.+...| ||....+ +..|+.==.|. .|.|..|+.-=-.. -....|+.|.....+
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 456677 8877654 45565422353 79999998643322 257899999876644
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=31.18 E-value=22 Score=29.27 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=33.3
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHH---------hcCCccccccc
Q 024511 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN---------EKGDTTCEICR 108 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~---------~k~~~~CEiCk 108 (266)
......|++|.+.++ |+ -| .+=-+-.|..||..=+. ..+.+.|..|.
T Consensus 60 Dg~~d~C~vC~~GG~---Ll-cC--D~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN---LI-CC--DFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TSCBCSCSSSCCCSS---EE-EC--SSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCeecccCCCCc---EE-eC--CCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 455789999987763 22 22 22347889999997652 46899999995
No 90
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=29.72 E-value=3.7 Score=35.03 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=33.8
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCccccccccccc
Q 024511 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (266)
Q Consensus 58 ~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~~y~ 112 (266)
....|.+|..++ .|+ - |.|--+..|..||.-.+.. ++.+.|..|...-+
T Consensus 6 ~~~~C~~C~~~g---~ll-~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGG---DLL-C--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCE---EEE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC---ceE-E--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 446799997654 232 3 4444578999998665543 57899999987654
No 91
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=29.14 E-value=4.5 Score=28.23 Aligned_cols=52 Identities=21% Similarity=0.350 Sum_probs=33.6
Q ss_pred CCCCCeeeEeccCCC--CCCcccccccCCCcccccHHHHHHHH-----HhcCCccccccccc
Q 024511 56 PSKLVECRICHEEDE--DSNMEIPCSCCGSLKYAHRKCVQRWC-----NEKGDTTCEICREQ 110 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~--d~~li~PC~C~GslkyvH~~CL~~W~-----~~k~~~~CEiCk~~ 110 (266)
+.+...|.+|...+. ++.|+ -|. +=-+..|..|+.--+ ..++.+.|..|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll-~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMV-ICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEE-ECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEE-ECC--CCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456778999987642 23443 333 334678999987433 24578899988654
No 92
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=28.06 E-value=18 Score=25.61 Aligned_cols=34 Identities=38% Similarity=0.796 Sum_probs=20.5
Q ss_pred CCCCCeeeEeccCCCCCCccccc--ccCCCcccccHHHH
Q 024511 56 PSKLVECRICHEEDEDSNMEIPC--SCCGSLKYAHRKCV 92 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC--~C~GslkyvH~~CL 92 (266)
......|-+|.....++..-.-| .|+ +|.|..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQ---KWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTC---CEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCcc---ccCchhcc
Confidence 34556799998875443333344 353 79999997
No 93
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=28.04 E-value=9.3 Score=29.10 Aligned_cols=50 Identities=22% Similarity=0.424 Sum_probs=31.2
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHH-hcCCccccccc
Q 024511 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN-EKGDTTCEICR 108 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~-~k~~~~CEiCk 108 (266)
...+...| ||...++++.|+. | .+=-++.|..|+.-=.. ....+.|+.|+
T Consensus 24 ~~~d~vrC-iC~~~~~~~~mi~-C--d~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 24 YGTDVTRC-ICGFTHDDGYMIC-C--DKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CCCCBCCC-TTSCCSCSSCEEE-B--TTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CCCCCEEe-ECCCccCCCcEEE-c--CCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 33455678 8876666566654 2 33347999999853111 12468999996
No 94
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.77 E-value=3.7 Score=31.14 Aligned_cols=51 Identities=24% Similarity=0.442 Sum_probs=32.4
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHH--hcCCccccccccc
Q 024511 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN--EKGDTTCEICREQ 110 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~--~k~~~~CEiCk~~ 110 (266)
.+...|.||...++++.| .-|. +=-+..|..||.-=+. -++.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~l-l~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKL-LFCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGC-EECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCE-EEcC--CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 455679999877643333 3332 2236899999863222 2568889999654
No 95
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=27.40 E-value=2.7 Score=29.75 Aligned_cols=49 Identities=27% Similarity=0.560 Sum_probs=29.4
Q ss_pred CCCCCCeeeEeccCCCCCCccc--ccccCCCcccccHHHHHHHHHh--cCCcccccccc
Q 024511 55 SPSKLVECRICHEEDEDSNMEI--PCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~--PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~ 109 (266)
.+.+...| ||...+. +.|+. -|.|+ ..+.|..|+. +.+ ++.+.|+.|..
T Consensus 7 d~~e~~yC-~C~~~~~-g~MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVSY-GEMIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp ---CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCCCcEE-ECCCCCC-CCeeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence 44566778 8877543 44543 23353 2799999987 332 46788888854
No 96
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=27.19 E-value=19 Score=28.12 Aligned_cols=52 Identities=17% Similarity=0.379 Sum_probs=36.1
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccCc
Q 024511 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGY 115 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~y 115 (266)
+--..-.|+.|+-+.. .|+. |. -+|.=..||..-+..+ ..|+||+++...+.
T Consensus 24 s~~G~~nCKsCWf~~k--~LV~---C~--dHYLCl~CLtlmL~~S--drCpIC~~pLPtkl 75 (99)
T 2ko5_A 24 THLGPQFCKSCWFENK--GLVE---CN--NHYLCLNCLTLLLSVS--NRCPICKMPLPTKL 75 (99)
T ss_dssp CCSCCCCCCSSCSCCS--SEEE---CS--SCEEEHHHHHHTCSSS--SEETTTTEECCCCS
T ss_pred cccCcccChhhccccC--Ceee---ec--chhhHHHHHHHHHhhc--cCCcccCCcCCcce
Confidence 3445567888887763 4552 32 3788899988777554 48999999987543
No 97
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.98 E-value=22 Score=25.40 Aligned_cols=52 Identities=23% Similarity=0.425 Sum_probs=33.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHH-------hcCCcccccccccccc
Q 024511 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCN-------EKGDTTCEICREQYNP 113 (266)
Q Consensus 58 ~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~-------~k~~~~CEiCk~~y~~ 113 (266)
+...| ||.....+..|+.==.|. .|.|..|+.-=.. ......|+.|.....+
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCCEE-ECCCccCCCCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 35778 887776544565422353 7999999843221 2468899999876654
No 98
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.91 E-value=3.8 Score=27.97 Aligned_cols=48 Identities=19% Similarity=0.428 Sum_probs=27.7
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCcccccccc
Q 024511 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICRE 109 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~ 109 (266)
......|.+|...+ .|+ -| .+=-+..|..||.--+.. ++.+.|..|..
T Consensus 6 ~~~~~~C~vC~~~g---~ll-~C--d~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSG---QLL-MC--DTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSS---CCE-EC--SSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCC---eEE-Ec--CCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34566799997653 332 23 233467888887643322 35666776643
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=25.60 E-value=24 Score=27.12 Aligned_cols=34 Identities=18% Similarity=0.484 Sum_probs=21.3
Q ss_pred CCCeeeEeccCCCC------CCcccccccCCCcccccHHHHHH
Q 024511 58 KLVECRICHEEDED------SNMEIPCSCCGSLKYAHRKCVQR 94 (266)
Q Consensus 58 ~~~~CRIC~ee~~d------~~li~PC~C~GslkyvH~~CL~~ 94 (266)
....|.+|+..++. ++|+ -| .+=-+..|..||.-
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll-~C--~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELI-SC--ADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCE-EC--TTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhce-Eh--hhcCCCCCCchhcC
Confidence 45689999876432 2444 23 33346789999963
No 100
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.78 E-value=26 Score=18.03 Aligned_cols=12 Identities=17% Similarity=0.739 Sum_probs=9.4
Q ss_pred cccccccccccc
Q 024511 102 TTCEICREQYNP 113 (266)
Q Consensus 102 ~~CEiCk~~y~~ 113 (266)
..|++|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 369999988864
No 101
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=23.75 E-value=28 Score=28.20 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=33.0
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHH------H---hcCCccccccc
Q 024511 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWC------N---EKGDTTCEICR 108 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~------~---~k~~~~CEiCk 108 (266)
+...+..|++|.++++ |+ - |.+--+-.|.+||.+=+ + .++.+.|-.|.
T Consensus 53 ~Dg~~~~C~vC~dGG~---Ll-c--Cd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 53 SDGMDEQCRWCAEGGN---LI-C--CDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp TTSCBSSCTTTCCCSE---EE-E--CSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCCcCeecCCCCe---eE-e--cCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 3456678999987652 22 2 23445889999999752 2 46789999993
No 102
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.69 E-value=6.1 Score=29.62 Aligned_cols=53 Identities=15% Similarity=0.359 Sum_probs=36.2
Q ss_pred CCCeeeEeccCCC--CCCcccccccCCCcccccHHHHHHHHH------hcCCcccccccccccc
Q 024511 58 KLVECRICHEEDE--DSNMEIPCSCCGSLKYAHRKCVQRWCN------EKGDTTCEICREQYNP 113 (266)
Q Consensus 58 ~~~~CRIC~ee~~--d~~li~PC~C~GslkyvH~~CL~~W~~------~k~~~~CEiCk~~y~~ 113 (266)
....|.+|...+. ++.|+ -|. +=-+..|..|+.--+. .++.+.|..|....+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll-~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLV-ECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEE-ECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceE-ECC--CCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4668999988754 23444 333 3346789999875543 3578999999877653
No 103
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=23.33 E-value=5.6 Score=30.37 Aligned_cols=53 Identities=25% Similarity=0.433 Sum_probs=31.7
Q ss_pred CCCCCCCeeeEeccCCCCCCcc--cccccCCCcccccHHHHHHHHHhcCCccccc-cccc
Q 024511 54 SSPSKLVECRICHEEDEDSNME--IPCSCCGSLKYAHRKCVQRWCNEKGDTTCEI-CREQ 110 (266)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~li--~PC~C~GslkyvH~~CL~~W~~~k~~~~CEi-Ck~~ 110 (266)
+...+...| ||...+. +.|+ --|.|. ..+.|..|+.-=-..++.+.|+. |...
T Consensus 21 ~~~~~~~yC-iC~~~~~-g~MI~CD~c~C~--~eWfH~~CVgl~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 21 NNNQEEVYC-FCRNVSY-GPMVACDNPACP--FEWFHYGCVGLKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp ---CCSCCS-TTTCCCS-SSEECCCSSSCS--CSCEETTTSSCSSCTTSCCCSSHHHHHH
T ss_pred CCCCCCcEE-EeCCCCC-CCEEEecCCCCc--cccCcCccCCCCcCCCCCccCChhhcch
Confidence 344567788 8977543 3454 233454 37999999862111246899999 8743
No 104
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=23.28 E-value=9.8 Score=37.03 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=35.0
Q ss_pred CCCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHhc---CCccccccccccccC
Q 024511 56 PSKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEK---GDTTCEICREQYNPG 114 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~-d~~li~PC~C~GslkyvH~~CL~~W~~~k---~~~~CEiCk~~y~~~ 114 (266)
..+...| ||....+ ++.|+.=-.|. .|.|..|+.-=-... +...|+.|.....+.
T Consensus 34 ~~~~~yC-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~ 92 (488)
T 3kv5_D 34 PPPPVYC-VCRQPYDVNRFMIECDICK---DWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSS 92 (488)
T ss_dssp CCCCEET-TTTEECCTTSCEEEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCSC
T ss_pred CCCCeEE-eCCCcCCCCCCeEEccCCC---CceeeeecCcCcccccCCCEEECCCCcCCcCcc
Confidence 3455666 8876643 45676633454 799999985322221 468999998766543
No 105
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.31 E-value=29 Score=18.06 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 024511 102 TTCEICREQYNP 113 (266)
Q Consensus 102 ~~CEiCk~~y~~ 113 (266)
..|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 479999998864
No 106
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=21.86 E-value=15 Score=28.83 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=30.5
Q ss_pred CCCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCccccccc
Q 024511 54 SSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICR 108 (266)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk 108 (266)
....+...|.+|.+.+ . ..-|..++--+..|..||. +.+ ++++.|+-|.
T Consensus 10 ~~~~~~~~C~~C~~~G---~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 10 PKQMHEDYCFQCGDGG---E-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CCCSSCSSCTTTCCCS---E-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CcCCCCCCCCcCCCCC---c-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 3445677899998433 3 3456522334799999997 443 4667666543
No 107
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.97 E-value=21 Score=18.46 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=10.1
Q ss_pred ccccccccccccC
Q 024511 102 TTCEICREQYNPG 114 (266)
Q Consensus 102 ~~CEiCk~~y~~~ 114 (266)
..|++|+..|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 4699999988743
No 108
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.52 E-value=28 Score=18.13 Aligned_cols=12 Identities=17% Similarity=0.703 Sum_probs=9.7
Q ss_pred cccccccccccc
Q 024511 102 TTCEICREQYNP 113 (266)
Q Consensus 102 ~~CEiCk~~y~~ 113 (266)
..|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 479999998864
No 109
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=20.50 E-value=8.9 Score=31.88 Aligned_cols=49 Identities=22% Similarity=0.478 Sum_probs=33.0
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--cCCccccccccccc
Q 024511 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--KGDTTCEICREQYN 112 (266)
Q Consensus 58 ~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~--k~~~~CEiCk~~y~ 112 (266)
+...|.+|..+++ | .- |.+--+..|..|+.--+.. ++.+.|..|...=+
T Consensus 3 ~~~~C~~C~~~g~---l-l~--Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNGGE---L-LC--CEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCCSS---C-EE--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCCCe---e-ee--cCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 3467999986542 3 23 3344578999998655543 57899999986543
Done!