Query 024512
Match_columns 266
No_of_seqs 255 out of 807
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12428 DUF3675: Protein of u 100.0 6.3E-40 1.4E-44 269.2 7.9 115 113-228 1-118 (118)
2 KOG3053 Uncharacterized conser 99.8 9.8E-22 2.1E-26 179.2 1.2 147 54-238 15-182 (293)
3 PHA02825 LAP/PHD finger-like p 99.8 1.5E-19 3.2E-24 155.1 3.6 77 54-141 3-79 (162)
4 KOG1609 Protein involved in mR 99.8 3.9E-19 8.5E-24 161.8 4.7 185 54-239 73-268 (323)
5 PHA02862 5L protein; Provision 99.7 1.4E-17 3E-22 141.1 3.8 61 59-122 2-62 (156)
6 smart00744 RINGv The RING-vari 99.7 1.8E-17 3.8E-22 116.9 3.0 48 61-108 1-49 (49)
7 PF12906 RINGv: RING-variant d 99.6 2.6E-17 5.6E-22 115.1 1.0 46 62-107 1-47 (47)
8 COG5183 SSM4 Protein involved 99.5 1.9E-14 4E-19 147.2 4.1 58 56-113 9-67 (1175)
9 PF13639 zf-RING_2: Ring finge 97.4 5.8E-05 1.3E-09 51.0 1.4 41 61-108 2-44 (44)
10 KOG4628 Predicted E3 ubiquitin 96.8 0.0013 2.8E-08 63.5 4.5 48 60-113 230-279 (348)
11 cd00162 RING RING-finger (Real 96.7 0.0013 2.9E-08 42.4 2.5 44 61-110 1-44 (45)
12 PHA02929 N1R/p28-like protein; 96.7 0.0015 3.2E-08 60.1 3.3 50 57-113 172-228 (238)
13 COG5540 RING-finger-containing 96.4 0.0025 5.5E-08 60.7 3.3 49 58-113 322-373 (374)
14 PLN03208 E3 ubiquitin-protein 96.3 0.0042 9.1E-08 55.6 3.8 51 57-113 16-80 (193)
15 COG5243 HRD1 HRD ubiquitin lig 96.1 0.0069 1.5E-07 59.2 4.8 50 56-112 284-345 (491)
16 PF13920 zf-C3HC4_3: Zinc fing 96.0 0.0033 7.1E-08 43.6 1.4 46 59-112 2-48 (50)
17 PF11793 FANCL_C: FANCL C-term 96.0 0.0022 4.8E-08 48.2 0.4 53 59-114 2-68 (70)
18 smart00184 RING Ring finger. E 95.9 0.0072 1.6E-07 37.5 2.6 39 62-107 1-39 (39)
19 PF00097 zf-C3HC4: Zinc finger 95.9 0.0042 9.1E-08 40.9 1.5 41 62-107 1-41 (41)
20 PF12861 zf-Apc11: Anaphase-pr 95.6 0.0087 1.9E-07 47.2 2.5 30 85-114 54-84 (85)
21 PF12678 zf-rbx1: RING-H2 zinc 95.6 0.0071 1.5E-07 45.6 1.8 41 61-108 21-73 (73)
22 PHA02926 zinc finger-like prot 95.3 0.016 3.6E-07 53.1 3.4 61 55-122 166-238 (242)
23 KOG0317 Predicted E3 ubiquitin 95.2 0.037 8.1E-07 52.3 5.6 54 53-114 233-286 (293)
24 KOG0802 E3 ubiquitin ligase [P 94.7 0.02 4.3E-07 57.8 2.6 48 57-111 289-340 (543)
25 KOG0828 Predicted E3 ubiquitin 94.3 0.039 8.4E-07 55.8 3.4 55 53-113 565-635 (636)
26 KOG0823 Predicted E3 ubiquitin 93.4 0.099 2.1E-06 48.0 4.1 53 55-113 43-96 (230)
27 smart00504 Ubox Modified RING 93.3 0.1 2.2E-06 36.9 3.3 46 60-113 2-47 (63)
28 PF13923 zf-C3HC4_2: Zinc fing 93.1 0.041 8.8E-07 36.2 0.9 38 62-107 1-39 (39)
29 COG5219 Uncharacterized conser 92.8 0.033 7.1E-07 60.0 0.2 54 56-112 1466-1523(1525)
30 KOG1493 Anaphase-promoting com 91.0 0.078 1.7E-06 41.4 0.4 49 61-113 22-82 (84)
31 TIGR00599 rad18 DNA repair pro 89.4 0.24 5.2E-06 48.8 2.4 50 56-113 23-72 (397)
32 PF14634 zf-RING_5: zinc-RING 89.3 0.27 5.9E-06 33.2 1.9 42 61-109 1-44 (44)
33 PF05883 Baculo_RING: Baculovi 88.0 0.28 6.1E-06 41.7 1.6 41 57-99 24-69 (134)
34 KOG1785 Tyrosine kinase negati 87.9 0.2 4.4E-06 49.7 0.8 50 57-112 367-416 (563)
35 COG5194 APC11 Component of SCF 87.2 0.38 8.2E-06 37.9 1.7 27 85-113 56-82 (88)
36 PF05290 Baculo_IE-1: Baculovi 86.3 0.55 1.2E-05 40.1 2.4 56 58-114 79-134 (140)
37 KOG0827 Predicted E3 ubiquitin 85.8 0.68 1.5E-05 45.8 3.1 45 59-108 4-52 (465)
38 PF14570 zf-RING_4: RING/Ubox 84.1 0.73 1.6E-05 32.8 1.8 45 62-112 1-48 (48)
39 PLN02189 cellulose synthase 80.6 1.3 2.9E-05 48.4 3.0 53 57-113 32-88 (1040)
40 KOG4265 Predicted E3 ubiquitin 77.9 2.7 6E-05 40.9 4.0 51 56-113 287-337 (349)
41 PLN02436 cellulose synthase A 77.4 1.9 4.1E-05 47.5 3.0 52 57-112 34-89 (1094)
42 PF06210 DUF1003: Protein of u 76.8 10 0.00022 31.0 6.5 48 177-224 6-56 (108)
43 KOG0804 Cytoplasmic Zn-finger 76.3 1.1 2.3E-05 45.1 0.8 49 55-112 171-222 (493)
44 KOG4445 Uncharacterized conser 75.7 2 4.3E-05 41.5 2.3 54 55-113 111-187 (368)
45 KOG1002 Nucleotide excision re 74.3 2.2 4.7E-05 44.1 2.3 59 54-118 531-592 (791)
46 KOG2930 SCF ubiquitin ligase, 74.2 2.2 4.8E-05 35.2 2.0 27 85-113 83-109 (114)
47 KOG0825 PHD Zn-finger protein 71.6 3.9 8.4E-05 44.0 3.4 31 75-112 141-171 (1134)
48 PF15227 zf-C3HC4_4: zinc fing 68.1 2.3 5E-05 28.8 0.7 40 62-107 1-42 (42)
49 PF06679 DUF1180: Protein of u 68.0 6.2 0.00013 34.6 3.5 32 210-241 100-133 (163)
50 PLN02195 cellulose synthase A 65.7 5.4 0.00012 43.6 3.2 52 58-112 5-59 (977)
51 PLN02638 cellulose synthase A 65.6 5.1 0.00011 44.3 3.0 53 57-112 15-70 (1079)
52 TIGR00570 cdk7 CDK-activating 64.6 6.3 0.00014 37.9 3.1 49 60-114 4-56 (309)
53 COG5432 RAD18 RING-finger-cont 63.1 3.4 7.3E-05 39.8 1.0 48 57-112 23-70 (391)
54 KOG2177 Predicted E3 ubiquitin 63.1 3.5 7.5E-05 35.3 1.0 47 55-109 9-55 (386)
55 KOG1645 RING-finger-containing 61.0 6.8 0.00015 39.2 2.7 49 59-111 4-55 (463)
56 PF08746 zf-RING-like: RING-li 60.1 4.9 0.00011 27.5 1.1 22 86-107 22-43 (43)
57 PF04564 U-box: U-box domain; 59.4 4.8 0.0001 30.0 1.1 46 61-113 6-51 (73)
58 COG4420 Predicted membrane pro 59.4 35 0.00075 30.9 6.6 50 175-224 58-110 (191)
59 KOG0287 Postreplication repair 56.2 4.3 9.3E-05 39.9 0.4 47 58-112 22-68 (442)
60 PF10367 Vps39_2: Vacuolar sor 54.4 4.3 9.4E-05 31.1 0.1 33 57-94 76-109 (109)
61 PLN02915 cellulose synthase A 52.9 12 0.00026 41.3 3.2 54 57-113 13-69 (1044)
62 PLN02400 cellulose synthase 51.8 11 0.00023 41.8 2.6 54 57-113 34-90 (1085)
63 PF14569 zf-UDP: Zinc-binding 51.0 17 0.00037 28.5 2.9 55 57-114 7-64 (80)
64 PF12273 RCR: Chitin synthesis 47.2 27 0.00059 28.7 3.8 7 232-238 24-30 (130)
65 COG2322 Predicted membrane pro 47.2 64 0.0014 28.8 6.2 55 176-230 84-144 (177)
66 PF07800 DUF1644: Protein of u 47.0 27 0.0006 30.7 3.9 39 59-99 2-49 (162)
67 PF10272 Tmpp129: Putative tra 46.8 20 0.00044 35.1 3.4 35 75-112 306-351 (358)
68 KOG1734 Predicted RING-contain 45.8 7.1 0.00015 37.3 0.1 64 55-134 220-292 (328)
69 PF13445 zf-RING_UBOX: RING-ty 45.5 18 0.0004 24.7 2.1 39 62-105 1-43 (43)
70 KOG1039 Predicted E3 ubiquitin 44.2 17 0.00038 35.4 2.5 51 57-112 159-221 (344)
71 KOG1941 Acetylcholine receptor 41.8 16 0.00036 36.6 1.9 49 56-109 362-413 (518)
72 PRK11877 psaI photosystem I re 41.8 37 0.00081 23.1 3.1 33 199-231 3-35 (38)
73 PF05191 ADK_lid: Adenylate ki 41.5 11 0.00025 24.9 0.6 18 102-119 2-19 (36)
74 KOG0320 Predicted E3 ubiquitin 41.3 25 0.00055 31.5 2.9 52 53-111 125-177 (187)
75 smart00249 PHD PHD zinc finger 39.6 9.1 0.0002 24.4 -0.1 30 61-93 1-30 (47)
76 PF13994 PgaD: PgaD-like prote 39.4 68 0.0015 26.8 5.0 34 201-234 57-90 (138)
77 KOG1952 Transcription factor N 37.9 23 0.0005 38.5 2.4 56 55-112 187-247 (950)
78 PRK10747 putative protoheme IX 36.6 1.7E+02 0.0038 28.0 8.0 12 202-213 40-51 (398)
79 PF12768 Rax2: Cortical protei 34.8 79 0.0017 29.8 5.2 17 202-218 235-251 (281)
80 PF04532 DUF587: Protein of un 32.4 16 0.00034 33.4 0.1 27 65-91 93-122 (215)
81 PRK12721 secretion system appa 31.0 1.6E+02 0.0035 28.6 6.8 62 176-237 146-211 (349)
82 PF13894 zf-C2H2_4: C2H2-type 29.5 22 0.00047 19.6 0.4 11 103-113 2-12 (24)
83 KOG2164 Predicted E3 ubiquitin 28.8 49 0.0011 34.0 2.9 50 59-114 186-238 (513)
84 PF05210 Sprouty: Sprouty prot 27.9 42 0.00091 27.7 1.9 20 74-98 58-77 (108)
85 TIGR01404 FlhB_rel_III type II 27.8 2E+02 0.0043 27.9 6.8 63 175-237 144-210 (342)
86 PF01102 Glycophorin_A: Glycop 27.3 99 0.0021 25.9 4.0 7 212-218 73-79 (122)
87 KOG0956 PHD finger protein AF1 27.2 32 0.00069 36.9 1.3 58 56-113 114-183 (900)
88 KOG0955 PHD finger protein BR1 27.0 21 0.00046 39.6 0.0 51 57-109 217-268 (1051)
89 KOG3899 Uncharacterized conser 26.3 43 0.00094 32.5 1.9 28 86-113 328-366 (381)
90 COG5574 PEX10 RING-finger-cont 26.0 77 0.0017 30.1 3.5 53 55-114 211-264 (271)
91 PF00096 zf-C2H2: Zinc finger, 25.8 27 0.00058 19.7 0.3 12 103-114 2-13 (23)
92 COG5175 MOT2 Transcriptional r 25.6 63 0.0014 32.0 2.9 50 57-112 12-64 (480)
93 PHA03375 hypothetical protein; 25.3 24 0.00053 37.7 0.1 27 65-91 99-128 (844)
94 PF07301 DUF1453: Protein of u 23.4 2.3E+02 0.0051 24.5 5.7 54 176-235 94-147 (148)
95 PF04423 Rad50_zn_hook: Rad50 22.9 57 0.0012 22.8 1.6 23 91-113 8-32 (54)
96 PF01595 DUF21: Domain of unkn 22.9 4.4E+02 0.0095 21.8 7.4 44 185-228 100-144 (183)
97 PRK05702 flhB flagellar biosyn 22.8 3.1E+02 0.0066 26.8 7.1 62 176-237 153-218 (359)
98 PF11118 DUF2627: Protein of u 22.6 3.7E+02 0.008 21.0 6.1 48 184-236 21-68 (77)
99 KOG2927 Membrane component of 22.4 1.9E+02 0.0041 28.7 5.5 20 205-225 232-251 (372)
100 PF09788 Tmemb_55A: Transmembr 22.0 1.1E+02 0.0024 28.9 3.7 60 169-228 189-249 (256)
101 KOG1100 Predicted E3 ubiquitin 21.8 44 0.00094 30.2 1.0 43 58-111 157-199 (207)
102 KOG4172 Predicted E3 ubiquitin 21.8 55 0.0012 24.3 1.3 44 60-112 8-54 (62)
103 KOG1607 Protein transporter of 21.6 5.5E+02 0.012 25.0 8.4 11 211-221 266-276 (318)
104 PRK08156 type III secretion sy 21.2 3.5E+02 0.0075 26.6 7.1 62 176-237 141-206 (361)
105 PRK13109 flhB flagellar biosyn 21.2 3E+02 0.0066 26.9 6.7 62 176-237 155-220 (358)
106 KOG0802 E3 ubiquitin ligase [P 21.1 62 0.0013 33.0 2.0 48 55-114 475-522 (543)
107 PF10571 UPF0547: Uncharacteri 21.1 46 0.001 20.6 0.7 13 100-112 13-25 (26)
108 PF04156 IncA: IncA protein; 20.9 4.3E+02 0.0093 22.5 7.0 18 180-197 13-30 (191)
109 KOG0801 Predicted E3 ubiquitin 20.8 52 0.0011 29.4 1.2 25 56-80 174-200 (205)
110 PF15086 UPF0542: Uncharacteri 20.6 3.4E+02 0.0074 21.1 5.5 36 201-236 18-54 (74)
111 COG1983 PspC Putative stress-r 20.6 1.2E+02 0.0025 23.3 2.9 15 213-227 45-59 (70)
112 PF12420 DUF3671: Protein of u 20.3 3.6E+02 0.0077 21.8 5.9 51 177-227 48-101 (104)
113 COG5416 Uncharacterized integr 20.3 3.8E+02 0.0082 21.9 5.9 25 201-225 57-82 (98)
No 1
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=100.00 E-value=6.3e-40 Score=269.21 Aligned_cols=115 Identities=55% Similarity=1.055 Sum_probs=111.5
Q ss_pred cCccCCCCcccccc---cccccccccccccCCCCeeEeeeeccccccccCCcccccCCCCcceehhHHHHHHHHHHHHHH
Q 024512 113 PGYTAPPPLFRYGG---NFRANWEISGRDLHHNPQLITMVTGEREFLDSDFDEYYTPSSRSLICCRIVAITFMVLLVLRH 189 (266)
Q Consensus 113 ~~y~~p~~~~~~~~---~~~~~w~i~~~dl~~n~~~iam~~~e~~~l~~~~~~y~~~~~~~~~~cr~~ai~fm~lLllrh 189 (266)
|+||+|+|+++.++ +|||+|+++++|+++ +++++|+.+|++|++++|++|+.+|++|++|||++|||||+||||||
T Consensus 1 PgYTaPp~~~~~~~~~i~ir~~we~~~~d~~~-~~~~a~~~ae~~~l~~~y~e~~~~~~~~a~~CRsvAli~m~LLllRh 79 (118)
T PF12428_consen 1 PGYTAPPKKFQPGETAIDIRGNWEISRRDLRD-PRFLAMAAAERQFLESEYDEYAASNTRGAACCRSVALIFMVLLLLRH 79 (118)
T ss_pred CCCCCCCCCCCcCccceEecCCccccccCccc-hhhhhhhhhhhhccccccccccccCCCceeHHHHHHHHHHHHHHHHH
Confidence 68999999999887 899999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024512 190 TLPIIISGAGEYSLTLFTLLILRTIGILLPIYVMVKAFT 228 (266)
Q Consensus 190 ~l~i~~~~~~~~~~~lftl~~LraagilLp~yim~r~~~ 228 (266)
+++++.+|+|+|++++||+++|||+||+||||||+|+++
T Consensus 80 al~l~~~~~~~~s~~lftl~~LRaaGilLP~Yim~rais 118 (118)
T PF12428_consen 80 ALALVTGGAEDYSFTLFTLLLLRAAGILLPCYIMARAIS 118 (118)
T ss_pred HHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999974
No 2
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=9.8e-22 Score=179.17 Aligned_cols=147 Identities=23% Similarity=0.401 Sum_probs=102.4
Q ss_pred CCCCCCCeeeEeccCCCCCC---cccccccCCCcccccHHHHHHHHHhcC------CccccccccccccCccCCCCcccc
Q 024512 54 SSPSKLVECRICHEEDEDSN---MEIPCSCCGSLKYAHRKCVQRWCNEKG------DTTCEICREQYNPGYTAPPPLFRY 124 (266)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~---li~PC~C~GslkyvH~~CL~~W~~~k~------~~~CEiCk~~y~~~y~~p~~~~~~ 124 (266)
+..+.++.||||+..++|+. +++||.|+|+.||||+.||.+|+++|+ ...|.+|+++|...|+...++.
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~~~-- 92 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGPFD-- 92 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccChHH--
Confidence 45678899999999998864 899999999999999999999999984 6899999999999886654442
Q ss_pred cccccccccccccccCCCCeeEeeeeccccccccCCcccccCCCCcceehhHHHHHHHHHHHHHHHh-------hhhhcC
Q 024512 125 GGNFRANWEISGRDLHHNPQLITMVTGEREFLDSDFDEYYTPSSRSLICCRIVAITFMVLLVLRHTL-------PIIISG 197 (266)
Q Consensus 125 ~~~~~~~w~i~~~dl~~n~~~iam~~~e~~~l~~~~~~y~~~~~~~~~~cr~~ai~fm~lLllrh~l-------~i~~~~ 197 (266)
|.+++.|-.- .+ .|=.+|..+++..+.+.|+ ..+.|.
T Consensus 93 -------~~Le~~d~~i-~r----------------------------~cp~l~~g~~v~~iYWsAVtyGA~T~lQv~G~ 136 (293)
T KOG3053|consen 93 -------RVLERLDILI-FR----------------------------LCPFLAAGIFVGSIYWSAVTYGAVTVLQVVGQ 136 (293)
T ss_pred -------HHHHHhhhHH-hh----------------------------cChHHHHHHHhheeehhhhhhcceeeeehhhh
Confidence 3333322100 00 1112222222222222221 111111
Q ss_pred C-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 024512 198 A-----GEYSLTLFTLLILRTIGILLPIYVMVKAFTAIQRRRHQQD 238 (266)
Q Consensus 198 ~-----~~~~~~lftl~~LraagilLp~yim~r~~~~lqr~r~~~~ 238 (266)
. .+-.+++|+++.|++++++|.+..++||.+++.|..|+..
T Consensus 137 ~~~m~ime~~d~~~lliGlP~ipv~LiL~RlirWeD~vLRl~R~~~ 182 (293)
T KOG3053|consen 137 EHGMQIMESGDPLFLLIGLPSIPVGLILGRLIRWEDAVLRLIRRKY 182 (293)
T ss_pred HHHHHHHhcCCceEEEEcCCcchHHHHHhhheeHHHHHHHHHHHhc
Confidence 1 0224689999999999999999999999999999988663
No 3
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.77 E-value=1.5e-19 Score=155.08 Aligned_cols=77 Identities=27% Similarity=0.564 Sum_probs=63.2
Q ss_pred CCCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccCccCCCCccccccccccccc
Q 024512 54 SSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPPPLFRYGGNFRANWE 133 (266)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~y~~p~~~~~~~~~~~~~w~ 133 (266)
+.+...+.||||+++++ .+.+||+|+|++||||++||++|++++++..||+|+++|.... ..+|+. .|.
T Consensus 3 ~~s~~~~~CRIC~~~~~--~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~-~~kpl~--------~W~ 71 (162)
T PHA02825 3 DVSLMDKCCWICKDEYD--VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK-NYKKCT--------KWR 71 (162)
T ss_pred CcCCCCCeeEecCCCCC--CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE-ecCCCc--------ccc
Confidence 45667889999998864 4679999999999999999999999999999999999998763 333442 576
Q ss_pred ccccccCC
Q 024512 134 ISGRDLHH 141 (266)
Q Consensus 134 i~~~dl~~ 141 (266)
.+.+|.++
T Consensus 72 ~~~~dc~~ 79 (162)
T PHA02825 72 CSFRDCHD 79 (162)
T ss_pred ccCcchhh
Confidence 66676665
No 4
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.76 E-value=3.9e-19 Score=161.78 Aligned_cols=185 Identities=29% Similarity=0.415 Sum_probs=136.1
Q ss_pred CCCCCCCeeeEeccCCCCC---CcccccccCCCcccccHHHHHHHHHhcCCccccccccccccCccCCCCcccccc---c
Q 024512 54 SSPSKLVECRICHEEDEDS---NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPPPLFRYGG---N 127 (266)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~---~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~y~~p~~~~~~~~---~ 127 (266)
+.++....||||+++.++. .++.||.|+|+++|||+.|+++|+..|++..||+|++.|...++.+++...+.. .
T Consensus 73 ~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~~~~ 152 (323)
T KOG1609|consen 73 ESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVISKVRSG 152 (323)
T ss_pred cCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehhhhhhH
Confidence 3455578999999987543 599999999999999999999999999999999999999998887776554332 1
Q ss_pred cccccccccc-ccCCCCeeEeeeeccccccccCCcccccCCCCcceehhHHH-HHHHHHHHHHHHhhhhhcC---CCchh
Q 024512 128 FRANWEISGR-DLHHNPQLITMVTGEREFLDSDFDEYYTPSSRSLICCRIVA-ITFMVLLVLRHTLPIIISG---AGEYS 202 (266)
Q Consensus 128 ~~~~w~i~~~-dl~~n~~~iam~~~e~~~l~~~~~~y~~~~~~~~~~cr~~a-i~fm~lLllrh~l~i~~~~---~~~~~ 202 (266)
..+.|..... .++. +..+++....+.++...++++......++..++... +.+.++.+.++.+.+.... ...+.
T Consensus 153 ~~~~~~~~~~~~~~~-~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 231 (323)
T KOG1609|consen 153 ALSERTLSGMILLKV-ALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYIFILK 231 (323)
T ss_pred hhhheeeehhhhhhh-hhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHHHHHH
Confidence 1123333332 3333 555666667777777777777767777777888877 7788888888887765432 22456
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Q 024512 203 LTLFTLLILRTIGILLPIYVMVKAFTAIQRRRHQQDT 239 (266)
Q Consensus 203 ~~lftl~~LraagilLp~yim~r~~~~lqr~r~~~~~ 239 (266)
...+.+.++++.++.++.+++++++...|+++.+..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (323)
T KOG1609|consen 232 SLKVKLVLIRAVIFLLLIKVVLAAVVILQLLLQRLVG 268 (323)
T ss_pred HHHHHHhHhhhhccchhhhhhhhhHHHHHHHHhccee
Confidence 6667788999999999999998555556666655543
No 5
>PHA02862 5L protein; Provisional
Probab=99.68 E-value=1.4e-17 Score=141.10 Aligned_cols=61 Identities=26% Similarity=0.585 Sum_probs=51.8
Q ss_pred CCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccCccCCCCcc
Q 024512 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPPPLF 122 (266)
Q Consensus 59 ~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~y~~p~~~~ 122 (266)
...||||++++++. .+||.|+|++||||++||++|++.+++..||+|+++|..+ +...|+.
T Consensus 2 ~diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik-~~yKpf~ 62 (156)
T PHA02862 2 SDICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK-KTYVSFK 62 (156)
T ss_pred CCEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE-EccccHH
Confidence 35899999987543 6999999999999999999999999999999999999864 3334443
No 6
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.68 E-value=1.8e-17 Score=116.90 Aligned_cols=48 Identities=58% Similarity=1.342 Sum_probs=43.8
Q ss_pred eeeEeccC-CCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccc
Q 024512 61 ECRICHEE-DEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICR 108 (266)
Q Consensus 61 ~CRIC~ee-~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk 108 (266)
+||||+++ +++++++.||.|+|+++|||++||++|+.++++.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 59999983 3457899999999999999999999999999999999996
No 7
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.65 E-value=2.6e-17 Score=115.11 Aligned_cols=46 Identities=52% Similarity=1.276 Sum_probs=37.7
Q ss_pred eeEeccCCCC-CCcccccccCCCcccccHHHHHHHHHhcCCcccccc
Q 024512 62 CRICHEEDED-SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEIC 107 (266)
Q Consensus 62 CRIC~ee~~d-~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC 107 (266)
||||++++++ ++|++||.|+|+++|||++||++|+.++++.+||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 8999998764 469999999999999999999999999999999998
No 8
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.48 E-value=1.9e-14 Score=147.16 Aligned_cols=58 Identities=40% Similarity=0.960 Sum_probs=52.8
Q ss_pred CCCCCeeeEeccCC-CCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024512 56 PSKLVECRICHEED-EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 56 ~~~~~~CRIC~ee~-~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.++...||||+.|+ +|++|-+||+|+||+||+|++||..|...+++++|+|||++|+.
T Consensus 9 N~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred CccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 34458999999887 57899999999999999999999999999999999999999864
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.43 E-value=5.8e-05 Score=51.04 Aligned_cols=41 Identities=39% Similarity=1.066 Sum_probs=31.2
Q ss_pred eeeEeccCCC--CCCcccccccCCCcccccHHHHHHHHHhcCCccccccc
Q 024512 61 ECRICHEEDE--DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICR 108 (266)
Q Consensus 61 ~CRIC~ee~~--d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk 108 (266)
.|-||+++-+ +.....||. +..|.+|+++|++.++ +|++|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~~--~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRNN--SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHSS--B-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhCC--cCCccC
Confidence 6889998853 334566653 7999999999998864 999995
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0013 Score=63.45 Aligned_cols=48 Identities=29% Similarity=0.773 Sum_probs=40.0
Q ss_pred CeeeEeccCCCCCC--cccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024512 60 VECRICHEEDEDSN--MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 60 ~~CRIC~ee~~d~~--li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
..|-||+|+-.++. -+.||+ +..|..|+..|+... .+.|++||+.-..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 79999999975443 479998 789999999999887 4679999997653
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.71 E-value=0.0013 Score=42.42 Aligned_cols=44 Identities=36% Similarity=0.949 Sum_probs=33.0
Q ss_pred eeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccc
Q 024512 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQ 110 (266)
Q Consensus 61 ~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~ 110 (266)
.|-||++...+.....||. ...|..|+.+|+.. +...|++|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4789988764333455575 56899999999987 56689999875
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.65 E-value=0.0015 Score=60.09 Aligned_cols=50 Identities=34% Similarity=0.698 Sum_probs=37.7
Q ss_pred CCCCeeeEeccCCCCC-------CcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024512 57 SKLVECRICHEEDEDS-------NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~-------~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
+...+|-||+++-.+. ....||. +..|..|+.+|+..+ .+|++|+.+|..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~~--~tCPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKEK--NTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhcC--CCCCCCCCEeeE
Confidence 4567999999974322 1345665 789999999999754 589999998863
No 13
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0025 Score=60.73 Aligned_cols=49 Identities=35% Similarity=0.726 Sum_probs=39.3
Q ss_pred CCCeeeEeccCCC--CCCcccccccCCCcccccHHHHHHHHH-hcCCcccccccccccc
Q 024512 58 KLVECRICHEEDE--DSNMEIPCSCCGSLKYAHRKCVQRWCN-EKGDTTCEICREQYNP 113 (266)
Q Consensus 58 ~~~~CRIC~ee~~--d~~li~PC~C~GslkyvH~~CL~~W~~-~k~~~~CEiCk~~y~~ 113 (266)
...+|-||.+..- |.-++.||+ +-.|..|+.+|+. .| ..|++|+++.+|
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y~--~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGYS--NKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhhc--ccCCccCCCCCC
Confidence 3489999988752 445799998 6899999999998 44 379999987653
No 14
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.28 E-value=0.0042 Score=55.61 Aligned_cols=51 Identities=16% Similarity=0.585 Sum_probs=40.3
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh--------------cCCcccccccccccc
Q 024512 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE--------------KGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~--------------k~~~~CEiCk~~y~~ 113 (266)
.+...|-||++... .+.+++|. +.....||.+|+.. ++...|++|+..+..
T Consensus 16 ~~~~~CpICld~~~-dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVR-DPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCC-CcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 35678999998765 47788876 67899999999863 235689999999863
No 15
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0069 Score=59.21 Aligned_cols=50 Identities=30% Similarity=0.751 Sum_probs=39.0
Q ss_pred CCCCCeeeEeccCC--CC----------CCcccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024512 56 PSKLVECRICHEED--ED----------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 56 ~~~~~~CRIC~ee~--~d----------~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
......|-||.+|- .+ .+-..||. +..|-.||+.|+..++ +|+||+.+..
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERqQ--TCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQQ--TCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhcc--CCCcccCccc
Confidence 45678999999882 11 23477887 6899999999998765 8999999854
No 16
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.00 E-value=0.0033 Score=43.60 Aligned_cols=46 Identities=28% Similarity=0.689 Sum_probs=35.9
Q ss_pred CCeeeEeccCCCCCCcccccccCCCccc-ccHHHHHHHHHhcCCccccccccccc
Q 024512 59 LVECRICHEEDEDSNMEIPCSCCGSLKY-AHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 59 ~~~CRIC~ee~~d~~li~PC~C~Gslky-vH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
...|.||++... +....||. +. +-..|+.+|.+ ....|++|+++++
T Consensus 2 ~~~C~iC~~~~~-~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR-DVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS-SEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCC-ceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 357999998764 36788997 45 88999999998 6679999998875
No 17
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.96 E-value=0.0022 Score=48.19 Aligned_cols=53 Identities=25% Similarity=0.428 Sum_probs=25.5
Q ss_pred CCeeeEeccCCC-C-CCcccc---cccCCCcccccHHHHHHHHHhc--C-------CccccccccccccC
Q 024512 59 LVECRICHEEDE-D-SNMEIP---CSCCGSLKYAHRKCVQRWCNEK--G-------DTTCEICREQYNPG 114 (266)
Q Consensus 59 ~~~CRIC~ee~~-d-~~li~P---C~C~GslkyvH~~CL~~W~~~k--~-------~~~CEiCk~~y~~~ 114 (266)
+..|.||++... + .....- +.|. +..|..||.+|+... + ...|+.|+.+.+..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 468999997642 2 222333 4564 689999999999752 1 23699999987654
No 18
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=95.91 E-value=0.0072 Score=37.47 Aligned_cols=39 Identities=38% Similarity=1.026 Sum_probs=29.7
Q ss_pred eeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccc
Q 024512 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEIC 107 (266)
Q Consensus 62 CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC 107 (266)
|.||++.. ......||. ...|..|+.+|++ ++...|++|
T Consensus 1 C~iC~~~~-~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-KDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCC-CCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 67888774 356778877 4689999999998 455678876
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=95.90 E-value=0.0042 Score=40.93 Aligned_cols=41 Identities=34% Similarity=0.944 Sum_probs=34.4
Q ss_pred eeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccc
Q 024512 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEIC 107 (266)
Q Consensus 62 CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC 107 (266)
|.||++...+.....||. +.+...|+.+|++.++...|++|
T Consensus 1 C~iC~~~~~~~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 678988776544589987 78999999999998888889987
No 20
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.62 E-value=0.0087 Score=47.19 Aligned_cols=30 Identities=20% Similarity=0.706 Sum_probs=25.6
Q ss_pred ccccHHHHHHHHHhc-CCccccccccccccC
Q 024512 85 KYAHRKCVQRWCNEK-GDTTCEICREQYNPG 114 (266)
Q Consensus 85 kyvH~~CL~~W~~~k-~~~~CEiCk~~y~~~ 114 (266)
+-.|..||.+|++.. .+..|++|+++|+.+
T Consensus 54 H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 54 HNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred cHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 679999999999963 567999999998753
No 21
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=95.57 E-value=0.0071 Score=45.61 Aligned_cols=41 Identities=37% Similarity=0.918 Sum_probs=28.6
Q ss_pred eeeEeccCCCC-----------CC-cccccccCCCcccccHHHHHHHHHhcCCccccccc
Q 024512 61 ECRICHEEDED-----------SN-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICR 108 (266)
Q Consensus 61 ~CRIC~ee~~d-----------~~-li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk 108 (266)
.|-||+++-.+ -+ ...+|+ ...|..||.+|++.+. +|++|+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcCC--cCCCCC
Confidence 49999877521 11 234554 7899999999997655 999996
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=95.27 E-value=0.016 Score=53.14 Aligned_cols=61 Identities=25% Similarity=0.536 Sum_probs=43.6
Q ss_pred CCCCCCeeeEeccCCC------C--CCcccccccCCCcccccHHHHHHHHHhcC----CccccccccccccCccCCCCcc
Q 024512 55 SPSKLVECRICHEEDE------D--SNMEIPCSCCGSLKYAHRKCVQRWCNEKG----DTTCEICREQYNPGYTAPPPLF 122 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~------d--~~li~PC~C~GslkyvH~~CL~~W~~~k~----~~~CEiCk~~y~~~y~~p~~~~ 122 (266)
..+.+.+|-||++.-- + -.+..+|. +.....|+.+|.+.+. ...|++|+..|.. -.|.+.+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~--I~pSrf~ 238 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRN--ITMSKFY 238 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeee--eccccce
Confidence 3466789999998631 1 13566776 6788999999998642 5679999999973 3444443
No 23
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.037 Score=52.29 Aligned_cols=54 Identities=31% Similarity=0.897 Sum_probs=44.3
Q ss_pred CCCCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024512 53 GSSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 53 ~~~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
...+.....|-+|++.-+ ++--+||. +..=-.|++.|+++|.. |++|+..++|.
T Consensus 233 ~~i~~a~~kC~LCLe~~~-~pSaTpCG-----HiFCWsCI~~w~~ek~e--CPlCR~~~~ps 286 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRS-NPSATPCG-----HIFCWSCILEWCSEKAE--CPLCREKFQPS 286 (293)
T ss_pred ccCCCCCCceEEEecCCC-CCCcCcCc-----chHHHHHHHHHHccccC--CCcccccCCCc
Confidence 456678899999998865 36679998 56667999999999864 99999999874
No 24
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.02 Score=57.83 Aligned_cols=48 Identities=29% Similarity=0.685 Sum_probs=39.2
Q ss_pred CCCCeeeEeccCCCCC----CcccccccCCCcccccHHHHHHHHHhcCCcccccccccc
Q 024512 57 SKLVECRICHEEDEDS----NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~----~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y 111 (266)
.....|.||.|+-... +-..||. +-.|..||++|++.+ .+|++|+..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er~--qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFERQ--QTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHHh--CcCCcchhhh
Confidence 4477999999986433 6778887 789999999999985 5899999954
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.039 Score=55.76 Aligned_cols=55 Identities=27% Similarity=0.670 Sum_probs=42.1
Q ss_pred CCCCCCCCeeeEeccCCC------C----------CCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024512 53 GSSPSKLVECRICHEEDE------D----------SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 53 ~~~~~~~~~CRIC~ee~~------d----------~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
|.--+....|-||...-+ + +.|.+||+ +..|+.||++|.+..+ ..|++|+.+..+
T Consensus 565 ~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~yk-l~CPvCR~pLPp 635 (636)
T KOG0828|consen 565 EAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTYK-LICPVCRCPLPP 635 (636)
T ss_pred cchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhhc-ccCCccCCCCCC
Confidence 455678899999986521 1 35788998 7899999999998533 689999887653
No 26
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.099 Score=48.05 Aligned_cols=53 Identities=17% Similarity=0.591 Sum_probs=43.1
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhc-CCcccccccccccc
Q 024512 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-GDTTCEICREQYNP 113 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k-~~~~CEiCk~~y~~ 113 (266)
.++..-.|-||++...| +.+++|. +..==-||-+|+..+ +...|++||.....
T Consensus 43 ~~~~~FdCNICLd~akd-PVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKD-PVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCCceeeeeeccccCC-CEEeecc-----cceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 46778899999998875 8999997 455568999999876 46778999998763
No 27
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=93.27 E-value=0.1 Score=36.91 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=36.5
Q ss_pred CeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024512 60 VECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 60 ~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
-.|.||.+.-.+ +...||. +-.-+.|+.+|+++ ..+|++|++++..
T Consensus 2 ~~Cpi~~~~~~~-Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKD-PVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCC-CEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCCh
Confidence 368899877654 7888874 67899999999987 4589999988853
No 28
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=93.06 E-value=0.041 Score=36.24 Aligned_cols=38 Identities=26% Similarity=0.877 Sum_probs=28.7
Q ss_pred eeEeccCCCCCC-cccccccCCCcccccHHHHHHHHHhcCCcccccc
Q 024512 62 CRICHEEDEDSN-MEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEIC 107 (266)
Q Consensus 62 CRIC~ee~~d~~-li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiC 107 (266)
|-||++...+ + ...||. +...+.|+.+|++. ..+|++|
T Consensus 1 C~iC~~~~~~-~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-PVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-EEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC-cCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 6788877654 5 578887 78999999999987 3689887
No 29
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.83 E-value=0.033 Score=60.00 Aligned_cols=54 Identities=26% Similarity=0.688 Sum_probs=39.9
Q ss_pred CCCCCeeeEeccCCC--CCCc-ccccc-cCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024512 56 PSKLVECRICHEEDE--DSNM-EIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~--d~~l-i~PC~-C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
-+...+|-||..--. |..+ -.-|. |+ .-.|-.||-+|+++++...|++|+.++.
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 356779999976422 2222 34454 44 4589999999999999999999998775
No 30
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.03 E-value=0.078 Score=41.39 Aligned_cols=49 Identities=27% Similarity=0.693 Sum_probs=35.5
Q ss_pred eeeEeccCCC-----------CCCcccccccCCCcccccHHHHHHHHHhcC-Ccccccccccccc
Q 024512 61 ECRICHEEDE-----------DSNMEIPCSCCGSLKYAHRKCVQRWCNEKG-DTTCEICREQYNP 113 (266)
Q Consensus 61 ~CRIC~ee~~-----------d~~li~PC~C~GslkyvH~~CL~~W~~~k~-~~~CEiCk~~y~~ 113 (266)
.|-||..+.+ +-+|+-- .| ....|..|+.+|++.+. ...|+.|++.|+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C---~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YC---LHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HH---HHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 7777766532 2345433 44 26799999999999764 5799999999875
No 31
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.42 E-value=0.24 Score=48.83 Aligned_cols=50 Identities=20% Similarity=0.519 Sum_probs=40.0
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024512 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.+....|.||++... .+.+.||. +.....|+.+|+..+ ..|++|+..+..
T Consensus 23 Le~~l~C~IC~d~~~-~PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFD-VPVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhh-CccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCcccc
Confidence 356679999988764 46778987 678899999999764 389999998864
No 32
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=89.30 E-value=0.27 Score=33.22 Aligned_cols=42 Identities=29% Similarity=0.665 Sum_probs=33.9
Q ss_pred eeeEeccCC--CCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccc
Q 024512 61 ECRICHEED--EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICRE 109 (266)
Q Consensus 61 ~CRIC~ee~--~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~ 109 (266)
.|-||++.. +..+++.+|. ..+..+|+.++. .....|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 377898876 3356899997 789999999998 66789999974
No 33
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=88.04 E-value=0.28 Score=41.75 Aligned_cols=41 Identities=29% Similarity=0.631 Sum_probs=29.1
Q ss_pred CCCCeeeEeccCCCC--CCcccccccCCCc---ccccHHHHHHHHHhc
Q 024512 57 SKLVECRICHEEDED--SNMEIPCSCCGSL---KYAHRKCVQRWCNEK 99 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d--~~li~PC~C~Gsl---kyvH~~CL~~W~~~k 99 (266)
....+|+||++.-.+ +-...+|. |++ |..|..|++||-+++
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt~~--g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVTDG--GTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEecC--CeehHHHHHHHHHHHHHHhhc
Confidence 457899999988543 44455544 554 459999999997654
No 34
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=87.88 E-value=0.2 Score=49.67 Aligned_cols=50 Identities=30% Similarity=0.721 Sum_probs=41.0
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024512 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
+....|.||-+.+.+ .-+-||. +..-..||..|..+.+...|+.|+.+.+
T Consensus 367 sTFeLCKICaendKd-vkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 367 STFELCKICAENDKD-VKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred chHHHHHHhhccCCC-ccccccc-----chHHHHHHHhhcccCCCCCCCceeeEec
Confidence 455689999777654 5578997 5677899999999988899999998886
No 35
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=87.15 E-value=0.38 Score=37.93 Aligned_cols=27 Identities=30% Similarity=0.755 Sum_probs=24.0
Q ss_pred ccccHHHHHHHHHhcCCcccccccccccc
Q 024512 85 KYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 85 kyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
...|-.|+.||++.|+ .|++++++|..
T Consensus 56 HaFH~HCI~rWL~Tk~--~CPld~q~w~~ 82 (88)
T COG5194 56 HAFHDHCIYRWLDTKG--VCPLDRQTWVL 82 (88)
T ss_pred hHHHHHHHHHHHhhCC--CCCCCCceeEE
Confidence 5689999999999976 79999999874
No 36
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.27 E-value=0.55 Score=40.12 Aligned_cols=56 Identities=25% Similarity=0.626 Sum_probs=45.5
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024512 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 58 ~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
..-+|-||+|...|..+..|=.|.|. +.---=|.+-|--.+-.-.|++||+.|+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 67799999999888899999999993 334445577887777778999999999854
No 37
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.80 E-value=0.68 Score=45.82 Aligned_cols=45 Identities=27% Similarity=0.770 Sum_probs=31.9
Q ss_pred CCeeeEeccCCC-CCCc--ccccccCCCcccccHHHHHHHHHhcCC-ccccccc
Q 024512 59 LVECRICHEEDE-DSNM--EIPCSCCGSLKYAHRKCVQRWCNEKGD-TTCEICR 108 (266)
Q Consensus 59 ~~~CRIC~ee~~-d~~l--i~PC~C~GslkyvH~~CL~~W~~~k~~-~~CEiCk 108 (266)
+..|.||-+.-. +.++ +.-|. ...|..||.+|+..-.. +.|+||+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 568999944322 2222 44444 67999999999987554 7999998
No 38
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=84.09 E-value=0.73 Score=32.76 Aligned_cols=45 Identities=31% Similarity=0.678 Sum_probs=20.3
Q ss_pred eeEeccCC-CCCCcccccccCCCcccccHHHHHHHHHhc--CCccccccccccc
Q 024512 62 CRICHEED-EDSNMEIPCSCCGSLKYAHRKCVQRWCNEK--GDTTCEICREQYN 112 (266)
Q Consensus 62 CRIC~ee~-~d~~li~PC~C~GslkyvH~~CL~~W~~~k--~~~~CEiCk~~y~ 112 (266)
|.+|.++- ..+.-..||.|. ++-|+.=|.+-+ .+..|+-|+++|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 45666664 234457999995 456666666544 4789999999985
No 39
>PLN02189 cellulose synthase
Probab=80.59 E-value=1.3 Score=48.43 Aligned_cols=53 Identities=25% Similarity=0.620 Sum_probs=39.6
Q ss_pred CCCCeeeEeccCC---CCCCcccccc-cCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024512 57 SKLVECRICHEED---EDSNMEIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~---~d~~li~PC~-C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.....|+||-++- .++.+...|+ |. --|=+.|. ..-.+.|+..|+.||+.|+-
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchhh
Confidence 3456999998873 4567888998 63 23788898 44445578899999999983
No 40
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.95 E-value=2.7 Score=40.91 Aligned_cols=51 Identities=25% Similarity=0.558 Sum_probs=32.5
Q ss_pred CCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024512 56 PSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
++..++|=||+.+.-+ -++.||.= -..=..|.+.-. -....|+||++++..
T Consensus 287 ~~~gkeCVIClse~rd-t~vLPCRH----LCLCs~Ca~~Lr--~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 287 SESGKECVICLSESRD-TVVLPCRH----LCLCSGCAKSLR--YQTNNCPICRQPIEE 337 (349)
T ss_pred ccCCCeeEEEecCCcc-eEEecchh----hehhHhHHHHHH--HhhcCCCccccchHh
Confidence 3668999999988754 56667650 011234655544 234579999998863
No 41
>PLN02436 cellulose synthase A
Probab=77.42 E-value=1.9 Score=47.47 Aligned_cols=52 Identities=25% Similarity=0.667 Sum_probs=39.7
Q ss_pred CCCCeeeEeccC---CCCCCcccccc-cCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024512 57 SKLVECRICHEE---DEDSNMEIPCS-CCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 57 ~~~~~CRIC~ee---~~d~~li~PC~-C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
.....|+||-++ +.++.+...|+ |. --|=+.|. ..-.+.++..|+.||+.|+
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECA---FPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 355699999887 34677888898 63 23788998 4444567889999999998
No 42
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=76.80 E-value=10 Score=30.97 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhhhhc---CCCchhHHHHHHHHHHHHhHHHHHHHHH
Q 024512 177 VAITFMVLLVLRHTLPIIIS---GAGEYSLTLFTLLILRTIGILLPIYVMV 224 (266)
Q Consensus 177 ~ai~fm~lLllrh~l~i~~~---~~~~~~~~lftl~~LraagilLp~yim~ 224 (266)
..++++++++++-++.+... .-|.|+|.++++++--.|.++-|+..|.
T Consensus 6 Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~Ilms 56 (108)
T PF06210_consen 6 FIIIFTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPLILMS 56 (108)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777666532 3478999998888777777777775543
No 43
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.35 E-value=1.1 Score=45.11 Aligned_cols=49 Identities=24% Similarity=0.691 Sum_probs=35.3
Q ss_pred CCCCCCeeeEeccCCC-C--CCcccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024512 55 SPSKLVECRICHEEDE-D--SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~-d--~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
...+.+.|-+|++--+ + +.+-.+|. +-.|-.|+++|-+. +|++|++--.
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWDS----SCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcccC----cChhhhhhcC
Confidence 4578999999998743 3 33555665 67899999999755 6777765544
No 44
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=75.73 E-value=2 Score=41.46 Aligned_cols=54 Identities=26% Similarity=0.514 Sum_probs=37.5
Q ss_pred CCCCCCeeeEeccCCCCC--CcccccccCCCcccccHHHHHHHHHhc---------------------CCcccccccccc
Q 024512 55 SPSKLVECRICHEEDEDS--NMEIPCSCCGSLKYAHRKCVQRWCNEK---------------------GDTTCEICREQY 111 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~--~li~PC~C~GslkyvH~~CL~~W~~~k---------------------~~~~CEiCk~~y 111 (266)
..-...+|-||+=...++ -.+++|- .|.|..||.|.+++- -...|++|....
T Consensus 111 nn~p~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i 185 (368)
T KOG4445|consen 111 NNHPNGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERI 185 (368)
T ss_pred CCCCCCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhc
Confidence 334455666666554333 4578887 799999999998641 156799999887
Q ss_pred cc
Q 024512 112 NP 113 (266)
Q Consensus 112 ~~ 113 (266)
+.
T Consensus 186 ~~ 187 (368)
T KOG4445|consen 186 KI 187 (368)
T ss_pred cc
Confidence 64
No 45
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=74.26 E-value=2.2 Score=44.07 Aligned_cols=59 Identities=25% Similarity=0.643 Sum_probs=46.0
Q ss_pred CCCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh---cCCccccccccccccCccCC
Q 024512 54 SSPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNPGYTAP 118 (266)
Q Consensus 54 ~~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~---k~~~~CEiCk~~y~~~y~~p 118 (266)
+......+|-+|+++.+| ..++-|+ +-.-+.|+..++.. ..+.+|+.|.-......+.|
T Consensus 531 ~enk~~~~C~lc~d~aed-~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAED-YIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred ccccCceeecccCChhhh-hHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 345668899999998765 7888887 35668899999874 45799999999888765554
No 46
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=74.22 E-value=2.2 Score=35.16 Aligned_cols=27 Identities=19% Similarity=0.586 Sum_probs=23.3
Q ss_pred ccccHHHHHHHHHhcCCcccccccccccc
Q 024512 85 KYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 85 kyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.-.|..|+.||++.++ .|++|.++...
T Consensus 83 HaFH~hCisrWlktr~--vCPLdn~eW~~ 109 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN--VCPLDNKEWVF 109 (114)
T ss_pred hHHHHHHHHHHHhhcC--cCCCcCcceeE
Confidence 5689999999998875 89999998754
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=71.58 E-value=3.9 Score=44.02 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=25.2
Q ss_pred ccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024512 75 EIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 75 i~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
..+|.| |.|..|+..|.+-- .+|++|+.+|.
T Consensus 141 ~k~c~H-----~FC~~Ci~sWsR~a--qTCPiDR~EF~ 171 (1134)
T KOG0825|consen 141 EKHTAH-----YFCEECVGSWSRCA--QTCPVDRGEFG 171 (1134)
T ss_pred cccccc-----ccHHHHhhhhhhhc--ccCchhhhhhh
Confidence 345665 99999999999654 48999999995
No 48
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=68.06 E-value=2.3 Score=28.75 Aligned_cols=40 Identities=28% Similarity=0.715 Sum_probs=25.9
Q ss_pred eeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCC--cccccc
Q 024512 62 CRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGD--TTCEIC 107 (266)
Q Consensus 62 CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~--~~CEiC 107 (266)
|-||++--. ++...+|. .-.=+.||.+|.++.+. ..|++|
T Consensus 1 CpiC~~~~~-~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 567776654 37778886 45678999999987654 588887
No 49
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=67.97 E-value=6.2 Score=34.63 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=19.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH--Hhhcccc
Q 024512 210 ILRTIGILLPIYVMVKAFTAIQRRR--HQQDTRF 241 (266)
Q Consensus 210 ~LraagilLp~yim~r~~~~lqr~r--~~~~~~~ 241 (266)
+|-.+-.++.+|+++|+++.=.|.| |+|+...
T Consensus 100 Vl~g~s~l~i~yfvir~~R~r~~~rktRkYgvl~ 133 (163)
T PF06679_consen 100 VLVGLSALAILYFVIRTFRLRRRNRKTRKYGVLT 133 (163)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccceeecccC
Confidence 3444445567899999987543323 6776543
No 50
>PLN02195 cellulose synthase A
Probab=65.68 E-value=5.4 Score=43.65 Aligned_cols=52 Identities=21% Similarity=0.533 Sum_probs=36.2
Q ss_pred CCCeeeEeccCC---CCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024512 58 KLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 58 ~~~~CRIC~ee~---~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
....|+||-++- .++.+..-|+=+| --|=+.|.+ .=.+-|+..|+.||++|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~--~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS--YPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC--Cccccchhh-hhhhcCCccCCccCCccc
Confidence 456899998763 3456666676332 237788873 333457899999999998
No 51
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=65.60 E-value=5.1 Score=44.26 Aligned_cols=53 Identities=23% Similarity=0.628 Sum_probs=37.2
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024512 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 57 ~~~~~CRIC~ee~---~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
.....|+||-++- .++.+..-|+=+| --|=+.|.+ .=.+-|+..|+.||++|+
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~--FPVCrpCYE-YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCA--FPVCRPCYE-YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCC--Cccccchhh-hhhhcCCccCCccCCchh
Confidence 3456999998873 4566767776333 237788873 333447889999999998
No 52
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.65 E-value=6.3 Score=37.87 Aligned_cols=49 Identities=18% Similarity=0.403 Sum_probs=35.1
Q ss_pred CeeeEeccCCCCC----CcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024512 60 VECRICHEEDEDS----NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 60 ~~CRIC~ee~~d~----~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
..|-+|....--+ -++++|. +-.=..|+.+.+. ++...|+.|+..++..
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~-~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFV-RGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhc-CCCCCCCCCCCccchh
Confidence 5799998864322 2677775 4556799999654 3566999999988754
No 53
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=63.10 E-value=3.4 Score=39.84 Aligned_cols=48 Identities=25% Similarity=0.571 Sum_probs=36.5
Q ss_pred CCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024512 57 SKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
..+..||||++--. -+.++||. +-.-.-|+.+.+++.. .|++|.+++.
T Consensus 23 Ds~lrC~IC~~~i~-ip~~TtCg-----HtFCslCIR~hL~~qp--~CP~Cr~~~~ 70 (391)
T COG5432 23 DSMLRCRICDCRIS-IPCETTCG-----HTFCSLCIRRHLGTQP--FCPVCREDPC 70 (391)
T ss_pred hhHHHhhhhhheee-cceecccc-----cchhHHHHHHHhcCCC--CCccccccHH
Confidence 35678999977654 37888887 3455678888887654 7999999875
No 54
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.05 E-value=3.5 Score=35.29 Aligned_cols=47 Identities=28% Similarity=0.648 Sum_probs=37.9
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccc
Q 024512 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICRE 109 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~ 109 (266)
...+...|.||++...+ +.+.||. +..=+.|+..+.. ....|+.|+.
T Consensus 9 ~~~~~~~C~iC~~~~~~-p~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFRE-PVLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred hccccccChhhHHHhhc-Ccccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 34578899999998765 3788887 5667889999988 7789999994
No 55
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.03 E-value=6.8 Score=39.22 Aligned_cols=49 Identities=18% Similarity=0.565 Sum_probs=36.7
Q ss_pred CCeeeEeccCCC---CCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccc
Q 024512 59 LVECRICHEEDE---DSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111 (266)
Q Consensus 59 ~~~CRIC~ee~~---d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y 111 (266)
...|-||+++-. +..++.| .| -...-..|+++|+..+-...|+.|+.+-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl-~c---ghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSL-QC---GHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeee-cc---cccccHHHHHHHHhhhhhhhCcccCChh
Confidence 457999998842 3456666 33 2578899999999866788999998753
No 56
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=60.09 E-value=4.9 Score=27.46 Aligned_cols=22 Identities=18% Similarity=0.730 Sum_probs=15.8
Q ss_pred cccHHHHHHHHHhcCCcccccc
Q 024512 86 YAHRKCVQRWCNEKGDTTCEIC 107 (266)
Q Consensus 86 yvH~~CL~~W~~~k~~~~CEiC 107 (266)
-+|..|++++++.+.+..|+.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 3999999999998877789877
No 57
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=59.39 E-value=4.8 Score=30.00 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=30.2
Q ss_pred eeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024512 61 ECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 61 ~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.|-|+++--. ++.+.||. +..=+.|+++|++. +..+|++|+.+...
T Consensus 6 ~CpIt~~lM~-dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 6 LCPITGELMR-DPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp B-TTTSSB-S-SEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred CCcCcCcHhh-CceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 4566655443 36777754 67899999999988 55689999887764
No 58
>COG4420 Predicted membrane protein [Function unknown]
Probab=59.38 E-value=35 Score=30.85 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhc---CCCchhHHHHHHHHHHHHhHHHHHHHHH
Q 024512 175 RIVAITFMVLLVLRHTLPIIIS---GAGEYSLTLFTLLILRTIGILLPIYVMV 224 (266)
Q Consensus 175 r~~ai~fm~lLllrh~l~i~~~---~~~~~~~~lftl~~LraagilLp~yim~ 224 (266)
+...+.|.++|++|..+.+.+. .-+.|+|-++-|++.-.|.|--|+..|.
T Consensus 58 w~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~~AaiqAp~IlmS 110 (191)
T COG4420 58 WAFILTFTLLLLLWIVLNLFLVPGLAWDPYPFILLNLLLSTLAAIQAPLILMS 110 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence 3456778888889988877542 2367888888888777788888876664
No 59
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=56.25 E-value=4.3 Score=39.88 Aligned_cols=47 Identities=28% Similarity=0.581 Sum_probs=36.9
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024512 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 58 ~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
..-.|-||++-.. -++++||+ +-.-.-|+...++.+ ..|+.|..+|.
T Consensus 22 ~lLRC~IC~eyf~-ip~itpCs-----HtfCSlCIR~~L~~~--p~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-IPMITPCS-----HTFCSLCIRKFLSYK--PQCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhc-Cceecccc-----chHHHHHHHHHhccC--CCCCceecccc
Confidence 4568999998765 48999987 345567888888776 47999998886
No 60
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=54.39 E-value=4.3 Score=31.15 Aligned_cols=33 Identities=24% Similarity=0.700 Sum_probs=24.0
Q ss_pred CCCCeeeEeccCCCCCC-cccccccCCCcccccHHHHHH
Q 024512 57 SKLVECRICHEEDEDSN-MEIPCSCCGSLKYAHRKCVQR 94 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~-li~PC~C~GslkyvH~~CL~~ 94 (266)
.....|.+|...-..+. .+.||. ..+|..|++|
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 34567999988865444 467875 6899999864
No 61
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=52.93 E-value=12 Score=41.29 Aligned_cols=54 Identities=26% Similarity=0.702 Sum_probs=37.7
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024512 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~---~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
-....|.||-++- .++.+..-|+=+| --|=+.|. ..=.+.|+..|+.||+.|+-
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~--fpvCr~cy-eye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCG--FPVCKPCY-EYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCC--Cccccchh-hhhhhcCCccCCccCCchhh
Confidence 4677899998773 3566666676332 23778887 33334578899999999983
No 62
>PLN02400 cellulose synthase
Probab=51.81 E-value=11 Score=41.84 Aligned_cols=54 Identities=22% Similarity=0.606 Sum_probs=36.5
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccccc
Q 024512 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNP 113 (266)
Q Consensus 57 ~~~~~CRIC~ee~---~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~ 113 (266)
.....|+||-++- .++.+..-|+=+| --|=+.|.+ .=.+-|+..|+.||+.|+-
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCa--FPVCRpCYE-YERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECA--FPVCRPCYE-YERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCC--Cccccchhh-eecccCCccCcccCCcccc
Confidence 3556999998773 4566766776332 236677763 2223478899999999983
No 63
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=51.04 E-value=17 Score=28.50 Aligned_cols=55 Identities=24% Similarity=0.562 Sum_probs=23.3
Q ss_pred CCCCeeeEeccCC---CCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024512 57 SKLVECRICHEED---EDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 57 ~~~~~CRIC~ee~---~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
.....|.||-++- .++.+..-|+=.+ --|=+.|.+-=.++ ++..|..|+++|+..
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~--fPvCr~CyEYErke-g~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECA--FPVCRPCYEYERKE-GNQVCPQCKTRYKRH 64 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-------HHHHHHHHHT-S-SB-TTT--B----
T ss_pred cCCcccccccCccccCCCCCEEEEEcccC--CccchhHHHHHhhc-CcccccccCCCcccc
Confidence 4567899998763 3566766676322 24778887655544 677999999999853
No 64
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=47.25 E-value=27 Score=28.69 Aligned_cols=7 Identities=43% Similarity=0.847 Sum_probs=2.8
Q ss_pred HHHHhhc
Q 024512 232 RRRHQQD 238 (266)
Q Consensus 232 r~r~~~~ 238 (266)
|||+|.+
T Consensus 24 rRR~r~G 30 (130)
T PF12273_consen 24 RRRRRRG 30 (130)
T ss_pred HHHhhcC
Confidence 4444433
No 65
>COG2322 Predicted membrane protein [Function unknown]
Probab=47.24 E-value=64 Score=28.79 Aligned_cols=55 Identities=33% Similarity=0.582 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhhhh--cCCCc----hhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024512 176 IVAITFMVLLVLRHTLPIII--SGAGE----YSLTLFTLLILRTIGILLPIYVMVKAFTAI 230 (266)
Q Consensus 176 ~~ai~fm~lLllrh~l~i~~--~~~~~----~~~~lftl~~LraagilLp~yim~r~~~~l 230 (266)
.++++|.++-+.||.+.--. ++.+. |-+-|++=.+|-++++-|-+|.++++....
T Consensus 84 ~l~l~FlvlYltr~~l~~~t~f~~~G~~k~~Y~~iL~~Hi~LA~i~vPLal~al~~a~~~~ 144 (177)
T COG2322 84 TLALVFLVLYLTRHGLGGETAFGGTGIYKGIYFFILITHIILAAINVPLALYALILAWKGL 144 (177)
T ss_pred HHHHHHHHHHHHHHhccccccCCCCeeeehHHHHHHHHHHHHHHHhhhHHHHHHHHHhcch
Confidence 46777777778888765432 44444 445555557899999999999999998654
No 66
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=47.01 E-value=27 Score=30.72 Aligned_cols=39 Identities=28% Similarity=0.669 Sum_probs=26.0
Q ss_pred CCeeeEeccCCCCC------Ccccccc---cCCCcccccHHHHHHHHHhc
Q 024512 59 LVECRICHEEDEDS------NMEIPCS---CCGSLKYAHRKCVQRWCNEK 99 (266)
Q Consensus 59 ~~~CRIC~ee~~d~------~li~PC~---C~GslkyvH~~CL~~W~~~k 99 (266)
...|-||.+-.-.. .-.+-|. |.. .|-|..||.+..+..
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKAY 49 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCC--ccchhHHHHHHHHHh
Confidence 46799998775321 1133333 654 588999999999764
No 67
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=46.82 E-value=20 Score=35.12 Aligned_cols=35 Identities=23% Similarity=0.714 Sum_probs=26.0
Q ss_pred ccccccCCCcccccHHHHHHHHHhc-----------CCccccccccccc
Q 024512 75 EIPCSCCGSLKYAHRKCVQRWCNEK-----------GDTTCEICREQYN 112 (266)
Q Consensus 75 i~PC~C~GslkyvH~~CL~~W~~~k-----------~~~~CEiCk~~y~ 112 (266)
-.+|-|+- -==.+|+-||+..+ ++..|+.|+..|=
T Consensus 306 C~~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 306 CQQCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred Cccccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 34677753 23478999999865 4779999999884
No 68
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.76 E-value=7.1 Score=37.26 Aligned_cols=64 Identities=25% Similarity=0.671 Sum_probs=43.8
Q ss_pred CCCCCCeeeEeccC-----CCCC----CcccccccCCCcccccHHHHHHHHHhcCCccccccccccccCccCCCCccccc
Q 024512 55 SPSKLVECRICHEE-----DEDS----NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPGYTAPPPLFRYG 125 (266)
Q Consensus 55 ~~~~~~~CRIC~ee-----~~d~----~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~y~~p~~~~~~~ 125 (266)
...+...|-+|-.. ++|+ .-..-|+ +-.|+-|++-|+--.++.+|+-||..-..+
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVdl~----------- 283 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVDLK----------- 283 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhhHh-----------
Confidence 34566789999544 2222 1234454 678999999999988888999999876543
Q ss_pred ccccccccc
Q 024512 126 GNFRANWEI 134 (266)
Q Consensus 126 ~~~~~~w~i 134 (266)
+-|+..|+-
T Consensus 284 rmfsnpWek 292 (328)
T KOG1734|consen 284 RMFSNPWEK 292 (328)
T ss_pred hhccCcccc
Confidence 135667875
No 69
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=45.47 E-value=18 Score=24.75 Aligned_cols=39 Identities=26% Similarity=0.701 Sum_probs=20.4
Q ss_pred eeEeccCCC-C-CCcccccccCCCcccccHHHHHHHHHhc--CCcccc
Q 024512 62 CRICHEEDE-D-SNMEIPCSCCGSLKYAHRKCVQRWCNEK--GDTTCE 105 (266)
Q Consensus 62 CRIC~ee~~-d-~~li~PC~C~GslkyvH~~CL~~W~~~k--~~~~CE 105 (266)
|-||.+-.+ + .+++.||. .-+=++||++|.+.+ +..+|+
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 556766322 2 35889977 578899999999875 456663
No 70
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.25 E-value=17 Score=35.37 Aligned_cols=51 Identities=24% Similarity=0.579 Sum_probs=36.0
Q ss_pred CCCCeeeEeccCCCCCC-----c-c-cccccCCCcccccHHHHHHHHHhcC-----Cccccccccccc
Q 024512 57 SKLVECRICHEEDEDSN-----M-E-IPCSCCGSLKYAHRKCVQRWCNEKG-----DTTCEICREQYN 112 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d~~-----l-i-~PC~C~GslkyvH~~CL~~W~~~k~-----~~~CEiCk~~y~ 112 (266)
...+.|=||.+.-.+.. + + .+|. +..=.+|+.+|...+. ...|++|+..-+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 56899999998854322 2 2 3465 3455689999997665 689999987643
No 71
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=41.83 E-value=16 Score=36.57 Aligned_cols=49 Identities=27% Similarity=0.705 Sum_probs=38.8
Q ss_pred CCCCCeeeEeccCC--CCCCc-ccccccCCCcccccHHHHHHHHHhcCCcccccccc
Q 024512 56 PSKLVECRICHEED--EDSNM-EIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICRE 109 (266)
Q Consensus 56 ~~~~~~CRIC~ee~--~d~~l-i~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~ 109 (266)
.+.+-.|-.|-+.- .+++| -.||+ +..|..|++..+...++++|+-|+.
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHH
Confidence 35567899996653 23344 58998 7899999999998899999999994
No 72
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=41.79 E-value=37 Score=23.12 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=24.6
Q ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 024512 199 GEYSLTLFTLLILRTIGILLPIYVMVKAFTAIQ 231 (266)
Q Consensus 199 ~~~~~~lftl~~LraagilLp~yim~r~~~~lq 231 (266)
++|+.+.+--++.+.+|+++|...|+-....++
T Consensus 3 g~~aas~LPsI~VPlVGlvfPai~Mallf~yIe 35 (38)
T PRK11877 3 GDFAASWLPWIFVPLVGWVFPAVFMVLLGRYIT 35 (38)
T ss_pred chHhHHhCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355556666678899999999999887665554
No 73
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=41.53 E-value=11 Score=24.90 Aligned_cols=18 Identities=22% Similarity=0.659 Sum_probs=13.7
Q ss_pred ccccccccccccCccCCC
Q 024512 102 TTCEICREQYNPGYTAPP 119 (266)
Q Consensus 102 ~~CEiCk~~y~~~y~~p~ 119 (266)
+.|+.|+..|...|.+|+
T Consensus 2 r~C~~Cg~~Yh~~~~pP~ 19 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPPK 19 (36)
T ss_dssp EEETTTTEEEETTTB--S
T ss_pred cCcCCCCCccccccCCCC
Confidence 479999999998877664
No 74
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.29 E-value=25 Score=31.54 Aligned_cols=52 Identities=15% Similarity=0.453 Sum_probs=35.7
Q ss_pred CCCCCCCCeeeEeccCCCCC-CcccccccCCCcccccHHHHHHHHHhcCCcccccccccc
Q 024512 53 GSSPSKLVECRICHEEDEDS-NMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111 (266)
Q Consensus 53 ~~~~~~~~~CRIC~ee~~d~-~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y 111 (266)
+...+...-|-||++..++. +.-+=|. +..=++|++.-++ ...+|++|+...
T Consensus 125 ~~~~~~~~~CPiCl~~~sek~~vsTkCG-----HvFC~~Cik~alk--~~~~CP~C~kkI 177 (187)
T KOG0320|consen 125 PLRKEGTYKCPICLDSVSEKVPVSTKCG-----HVFCSQCIKDALK--NTNKCPTCRKKI 177 (187)
T ss_pred ccccccccCCCceecchhhccccccccc-----hhHHHHHHHHHHH--hCCCCCCccccc
Confidence 44556678999999987643 2334444 4556788887774 456899999744
No 75
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13994 PgaD: PgaD-like protein
Probab=39.36 E-value=68 Score=26.78 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024512 201 YSLTLFTLLILRTIGILLPIYVMVKAFTAIQRRR 234 (266)
Q Consensus 201 ~~~~lftl~~LraagilLp~yim~r~~~~lqr~r 234 (266)
+..++.++.+.-.+-++..+..++|+.+--.|++
T Consensus 57 ~~~~~~~l~~y~~i~~~~a~~Li~Wa~yn~~Rf~ 90 (138)
T PF13994_consen 57 FLSSLNTLQIYLLIALVNAVILILWAKYNRLRFR 90 (138)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556666666666666677777888865433433
No 77
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=37.85 E-value=23 Score=38.52 Aligned_cols=56 Identities=21% Similarity=0.525 Sum_probs=39.9
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhc-----CCccccccccccc
Q 024512 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEK-----GDTTCEICREQYN 112 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k-----~~~~CEiCk~~y~ 112 (266)
......+|-||.+.-.-..-+= +|+.=....|..|+++|-..+ ..|.|+-|+..++
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~W--SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVW--SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred HhcCceEEEEeeeeccccCCce--ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 4567889999998753211111 243335679999999999753 3789999998876
No 78
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=36.56 E-value=1.7e+02 Score=28.03 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHH
Q 024512 202 SLTLFTLLILRT 213 (266)
Q Consensus 202 ~~~lftl~~Lra 213 (266)
++.+|.++++-+
T Consensus 40 sl~~~~~~~~~~ 51 (398)
T PRK10747 40 SVTGLAIILILA 51 (398)
T ss_pred hHHHHHHHHHHH
Confidence 444444433333
No 79
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=34.76 E-value=79 Score=29.79 Aligned_cols=17 Identities=41% Similarity=0.677 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHhHHH
Q 024512 202 SLTLFTLLILRTIGILL 218 (266)
Q Consensus 202 ~~~lftl~~LraagilL 218 (266)
+.+|=++++|-.+||++
T Consensus 235 AiALG~v~ll~l~Gii~ 251 (281)
T PF12768_consen 235 AIALGTVFLLVLIGIIL 251 (281)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555667777778776
No 80
>PF04532 DUF587: Protein of unknown function (DUF587); InterPro: IPR007618 This domain is found at the N-termini of some human herpesvirus U58 proteins, and some cytomegalovirus UL87 proteins. This region is always found N-terminal to the UL87 (IPR004285 from INTERPRO), which has no known function.
Probab=32.45 E-value=16 Score=33.39 Aligned_cols=27 Identities=37% Similarity=0.603 Sum_probs=19.6
Q ss_pred eccCCCCC--C-cccccccCCCcccccHHH
Q 024512 65 CHEEDEDS--N-MEIPCSCCGSLKYAHRKC 91 (266)
Q Consensus 65 C~ee~~d~--~-li~PC~C~GslkyvH~~C 91 (266)
|..++.|. . ...++.|.|.+-|||+++
T Consensus 93 CyCdeWd~~eyl~~~~~~C~GP~LYVhr~r 122 (215)
T PF04532_consen 93 CYCDEWDTNEYLAECAYFCRGPLLYVHRKR 122 (215)
T ss_pred eeecceehhhHHhhCCcccCCceEEEEccc
Confidence 55555432 2 379999999999999943
No 81
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=31.00 E-value=1.6e+02 Score=28.62 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhhhhh---cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHhh
Q 024512 176 IVAITFMVLLVLRHTLPIII---SGAGEYSLTLFTLLILRTIGILLPIYVMVKAFTAI-QRRRHQQ 237 (266)
Q Consensus 176 ~~ai~fm~lLllrh~l~i~~---~~~~~~~~~lftl~~LraagilLp~yim~r~~~~l-qr~r~~~ 237 (266)
++++.+.+.++++..++-+. .........++.-+++..++.++.+++++=.++.+ ||++...
T Consensus 146 v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k 211 (349)
T PRK12721 146 VVILSLIFAYLLHYYAPSFAYLPYCGAACGLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMK 211 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666555442 22223334444444555555566666666667554 5554443
No 82
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=29.48 E-value=22 Score=19.56 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=7.3
Q ss_pred ccccccccccc
Q 024512 103 TCEICREQYNP 113 (266)
Q Consensus 103 ~CEiCk~~y~~ 113 (266)
.|++|+..|..
T Consensus 2 ~C~~C~~~~~~ 12 (24)
T PF13894_consen 2 QCPICGKSFRS 12 (24)
T ss_dssp E-SSTS-EESS
T ss_pred CCcCCCCcCCc
Confidence 69999998874
No 83
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.82 E-value=49 Score=33.98 Aligned_cols=50 Identities=26% Similarity=0.574 Sum_probs=35.5
Q ss_pred CCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHh---cCCccccccccccccC
Q 024512 59 LVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNE---KGDTTCEICREQYNPG 114 (266)
Q Consensus 59 ~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~---k~~~~CEiCk~~y~~~ 114 (266)
...|-||+++..- +..+-|. +..=-.||-+..+. ++-..|++|...+.++
T Consensus 186 ~~~CPICL~~~~~-p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPSV-PVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCCc-ccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 7899999998754 3333355 34456788777664 4678999999888763
No 84
>PF05210 Sprouty: Sprouty protein (Spry); InterPro: IPR007875 Sprouty (Spry) and Spred (Sprouty related EVH1 domain) proteins have been identified as inhibitors of the Ras/mitogen-activated protein kinase (MAPK) cascade, a pathway crucial for developmental processes initiated by activation of various receptor tyrosine kinases [1,2]. These proteins share a conserved, C-terminal cysteine-rich region, the SPR domain. This domain has been defined as a novel cytosol to membrane translocation domain [, , , ]. It has been found to be a PtdIns(4,5)P2-binding domain that targets the proteins to a cellular localization that maximizes their inhibitory potential [, ]. It also mediates homodimer formation of these proteins [, ]. The SPR domain can occur in association with the WH1 domain (see IPR000697 from INTERPRO) (located in the N-terminal part of the proteins) in the Spred proteins.; GO: 0007275 multicellular organismal development, 0009966 regulation of signal transduction, 0016020 membrane
Probab=27.88 E-value=42 Score=27.69 Aligned_cols=20 Identities=35% Similarity=0.921 Sum_probs=16.1
Q ss_pred cccccccCCCcccccHHHHHHHHHh
Q 024512 74 MEIPCSCCGSLKYAHRKCVQRWCNE 98 (266)
Q Consensus 74 li~PC~C~GslkyvH~~CL~~W~~~ 98 (266)
-..||+|.. +..|..||.--
T Consensus 58 ad~PCSC~~-----~~~c~~RW~~L 77 (108)
T PF05210_consen 58 ADHPCSCDT-----PSRCCARWLAL 77 (108)
T ss_pred CCCccccCC-----ccchHHHHHHH
Confidence 346999986 88999999853
No 85
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=27.75 E-value=2e+02 Score=27.85 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhc---CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHhh
Q 024512 175 RIVAITFMVLLVLRHTLPIIIS---GAGEYSLTLFTLLILRTIGILLPIYVMVKAFTAI-QRRRHQQ 237 (266)
Q Consensus 175 r~~ai~fm~lLllrh~l~i~~~---~~~~~~~~lftl~~LraagilLp~yim~r~~~~l-qr~r~~~ 237 (266)
-++++.+.+.++++..++.+.. ........++.-+++..+..++.+++++=+++.. ||++...
T Consensus 144 K~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k 210 (342)
T TIGR01404 144 KLVALALIFYLFLKNYLKELFALPYCGLDGLAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMK 210 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666677777665532 2223334444445556666666666666666554 5555443
No 86
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.28 E-value=99 Score=25.91 Aligned_cols=7 Identities=14% Similarity=0.226 Sum_probs=3.1
Q ss_pred HHHhHHH
Q 024512 212 RTIGILL 218 (266)
Q Consensus 212 raagilL 218 (266)
-.|||++
T Consensus 73 v~aGvIg 79 (122)
T PF01102_consen 73 VMAGVIG 79 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3345444
No 87
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=27.20 E-value=32 Score=36.85 Aligned_cols=58 Identities=26% Similarity=0.557 Sum_probs=40.6
Q ss_pred CCCCCeeeEeccCCCCCC----cccccccCCCcccccHHHHHHH---HHhc-----CCcccccccccccc
Q 024512 56 PSKLVECRICHEEDEDSN----MEIPCSCCGSLKYAHRKCVQRW---CNEK-----GDTTCEICREQYNP 113 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d~~----li~PC~C~GslkyvH~~CL~~W---~~~k-----~~~~CEiCk~~y~~ 113 (266)
....+.|.||.|++-++. --.-|+=.|=-.-.|..|.|+- |.|. +...|--|++.|..
T Consensus 114 dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsK 183 (900)
T KOG0956|consen 114 DRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSK 183 (900)
T ss_pred hhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHH
Confidence 356789999998864322 2445654454578999999875 3333 46799999999963
No 88
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=26.97 E-value=21 Score=39.58 Aligned_cols=51 Identities=24% Similarity=0.444 Sum_probs=35.1
Q ss_pred CCCCeeeEeccCCCC-CCcccccccCCCcccccHHHHHHHHHhcCCcccccccc
Q 024512 57 SKLVECRICHEEDED-SNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICRE 109 (266)
Q Consensus 57 ~~~~~CRIC~ee~~d-~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~ 109 (266)
+....|-||.+.+.+ .+.+.-|. |=-.+||+.|.-.=....|.+.|--|.+
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD--~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~ 268 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCD--GCNLAVHQECYGIPFIPEGQWLCRRCLQ 268 (1051)
T ss_pred CCCccceeecccccCCCceEEEcC--CCcchhhhhccCCCCCCCCcEeehhhcc
Confidence 456789999998754 35566665 3347999999874444456677777754
No 89
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.34 E-value=43 Score=32.49 Aligned_cols=28 Identities=21% Similarity=0.571 Sum_probs=22.1
Q ss_pred cccHHHHHHHHHh-----------cCCcccccccccccc
Q 024512 86 YAHRKCVQRWCNE-----------KGDTTCEICREQYNP 113 (266)
Q Consensus 86 yvH~~CL~~W~~~-----------k~~~~CEiCk~~y~~ 113 (266)
.--++||.+|+.. +|+-.|+.|+..|-.
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 4568999999964 357899999998853
No 90
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.04 E-value=77 Score=30.12 Aligned_cols=53 Identities=28% Similarity=0.599 Sum_probs=39.1
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHH-HHHhcCCccccccccccccC
Q 024512 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQR-WCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~-W~~~k~~~~CEiCk~~y~~~ 114 (266)
.+.....|-||.+..+ .+.-+||. +..=-.||.. |...|- ..|++|++.-.|+
T Consensus 211 ip~~d~kC~lC~e~~~-~ps~t~Cg-----HlFC~~Cl~~~~t~~k~-~~CplCRak~~pk 264 (271)
T COG5574 211 IPLADYKCFLCLEEPE-VPSCTPCG-----HLFCLSCLLISWTKKKY-EFCPLCRAKVYPK 264 (271)
T ss_pred ccccccceeeeecccC-Cccccccc-----chhhHHHHHHHHHhhcc-ccCchhhhhccch
Confidence 3456788999988875 37778887 5666789988 887653 4699998765543
No 91
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=25.82 E-value=27 Score=19.72 Aligned_cols=12 Identities=25% Similarity=0.897 Sum_probs=9.7
Q ss_pred cccccccccccC
Q 024512 103 TCEICREQYNPG 114 (266)
Q Consensus 103 ~CEiCk~~y~~~ 114 (266)
.|+.|+..|+..
T Consensus 2 ~C~~C~~~f~~~ 13 (23)
T PF00096_consen 2 KCPICGKSFSSK 13 (23)
T ss_dssp EETTTTEEESSH
T ss_pred CCCCCCCccCCH
Confidence 599999999753
No 92
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=25.63 E-value=63 Score=32.04 Aligned_cols=50 Identities=26% Similarity=0.649 Sum_probs=32.8
Q ss_pred CCCCeeeEeccCCC-CCCcccccccCCCcccccHHHHHHHHHhc--CCccccccccccc
Q 024512 57 SKLVECRICHEEDE-DSNMEIPCSCCGSLKYAHRKCVQRWCNEK--GDTTCEICREQYN 112 (266)
Q Consensus 57 ~~~~~CRIC~ee~~-d~~li~PC~C~GslkyvH~~CL~~W~~~k--~~~~CEiCk~~y~ 112 (266)
.++..|-.|.++-+ ...-..||.|. | +-|---|-+-+ -+..|+-|+..|.
T Consensus 12 deed~cplcie~mditdknf~pc~cg----y--~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCG----Y--QICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccccCcccccccccccCCcccCCcc----c--HHHHHHHHHHHhhccCCChHhhhhcc
Confidence 34556999998853 22446899983 3 33433354433 3678999999986
No 93
>PHA03375 hypothetical protein; Provisional
Probab=25.31 E-value=24 Score=37.67 Aligned_cols=27 Identities=33% Similarity=0.708 Sum_probs=19.9
Q ss_pred eccCCCC--CC-cccccccCCCcccccHHH
Q 024512 65 CHEEDED--SN-MEIPCSCCGSLKYAHRKC 91 (266)
Q Consensus 65 C~ee~~d--~~-li~PC~C~GslkyvH~~C 91 (266)
|..++.| +. ...+|.|.|.+-|||+++
T Consensus 99 CycdeWd~~eyl~~~~~~C~gP~LYvhr~r 128 (844)
T PHA03375 99 CYCDEWDVNEYLAKTACNCRGPLLYIHRSR 128 (844)
T ss_pred ccccchhhhhhhhhcccccCCceEEEEecc
Confidence 5555543 23 379999999999999943
No 94
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=23.37 E-value=2.3e+02 Score=24.54 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024512 176 IVAITFMVLLVLRHTLPIIISGAGEYSLTLFTLLILRTIGILLPIYVMVKAFTAIQRRRH 235 (266)
Q Consensus 176 ~~ai~fm~lLllrh~l~i~~~~~~~~~~~lftl~~LraagilLp~yim~r~~~~lqr~r~ 235 (266)
...+++.++|++|-++-..+++.-+ .-.+-.++++-|.|.++ -|=+..+.+.||
T Consensus 94 aF~~ili~LlviR~~l~~~l~~~i~-~~~~~~mFf~lAfgmIv-----pWRiamy~kyrk 147 (148)
T PF07301_consen 94 AFIFILIGLLVIRIVLKSYLSGSID-PGQLSGMFFLLAFGMIV-----PWRIAMYIKYRK 147 (148)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHhc
Confidence 3567888899999999988886322 22333344555555444 344555555543
No 95
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=22.86 E-value=57 Score=22.79 Aligned_cols=23 Identities=17% Similarity=0.551 Sum_probs=11.9
Q ss_pred HHHHHHHh-cC-Ccccccccccccc
Q 024512 91 CVQRWCNE-KG-DTTCEICREQYNP 113 (266)
Q Consensus 91 CL~~W~~~-k~-~~~CEiCk~~y~~ 113 (266)
-+.++++. ++ ...|++|+.+|..
T Consensus 8 ~~~k~i~~l~~~~~~CPlC~r~l~~ 32 (54)
T PF04423_consen 8 ELKKYIEELKEAKGCCPLCGRPLDE 32 (54)
T ss_dssp HHHHHHHHHTT-SEE-TTT--EE-H
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCCH
Confidence 45666654 22 3399999999864
No 96
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=22.85 E-value=4.4e+02 Score=21.78 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=18.8
Q ss_pred HHHHHHhhhhhcCCCchhHHHHHHHHHHH-HhHHHHHHHHHHHHH
Q 024512 185 LVLRHTLPIIISGAGEYSLTLFTLLILRT-IGILLPIYVMVKAFT 228 (266)
Q Consensus 185 Lllrh~l~i~~~~~~~~~~~lftl~~Lra-agilLp~yim~r~~~ 228 (266)
++....+|-.++-..-..+...+..+++. .-++-|+-.++.++.
T Consensus 100 lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~ 144 (183)
T PF01595_consen 100 LIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFIS 144 (183)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555432222333333333333 233445555555543
No 97
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.84 E-value=3.1e+02 Score=26.84 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhc--CCC-chhHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHhh
Q 024512 176 IVAITFMVLLVLRHTLPIIIS--GAG-EYSLTLFTLLILRTIGILLPIYVMVKAFTAI-QRRRHQQ 237 (266)
Q Consensus 176 ~~ai~fm~lLllrh~l~i~~~--~~~-~~~~~lftl~~LraagilLp~yim~r~~~~l-qr~r~~~ 237 (266)
++++.+.+.++++..++-++. ..+ .....++.-+++..+..++.+++++=.++.+ ||++..+
T Consensus 153 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k 218 (359)
T PRK05702 153 VLLVGGVAYFVLWSNLDELLSLAAEPLEAALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLK 218 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666665532 221 2223333344555566666666666666554 5554443
No 98
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=22.56 E-value=3.7e+02 Score=21.04 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=28.1
Q ss_pred HHHHHHHhhhhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 024512 184 LLVLRHTLPIIISGAGEYSLTLFTLLILRTIGILLPIYVMVKAFTAIQRRRHQ 236 (266)
Q Consensus 184 lLllrh~l~i~~~~~~~~~~~lftl~~LraagilLp~yim~r~~~~lqr~r~~ 236 (266)
+.+.|+++=-.+... ...++.-+++..+-+++.++.++=++ +.|-|.|
T Consensus 21 iklMRD~~F~~~~~p---~~~lwlqfl~G~~lf~~G~~Fi~GfI--~~RDRKr 68 (77)
T PF11118_consen 21 IKLMRDTVFGILFSP---FPSLWLQFLAGLLLFAIGVGFIAGFI--LHRDRKR 68 (77)
T ss_pred HHHHHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHhHh--heeeccc
Confidence 456677754433322 12445556777777788888888773 4444433
No 99
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.38 E-value=1.9e+02 Score=28.72 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 024512 205 LFTLLILRTIGILLPIYVMVK 225 (266)
Q Consensus 205 lftl~~LraagilLp~yim~r 225 (266)
+|.|.++|+|-|+| +|++.+
T Consensus 232 IlvLaIvRlILF~I-~~il~~ 251 (372)
T KOG2927|consen 232 ILVLAIVRLILFGI-TWILTG 251 (372)
T ss_pred HHHHHHHHHHHHHH-HHHHhC
Confidence 44456777766655 555544
No 100
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=22.04 E-value=1.1e+02 Score=28.90 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=31.3
Q ss_pred CcceehhHHHHHHHHHHHHHHHhhhhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024512 169 RSLICCRIVAITFMVLLVLRHTLPIII-SGAGEYSLTLFTLLILRTIGILLPIYVMVKAFT 228 (266)
Q Consensus 169 ~~~~~cr~~ai~fm~lLllrh~l~i~~-~~~~~~~~~lftl~~LraagilLp~yim~r~~~ 228 (266)
-|..|.|.=+|+|.+|-++=.++.+.+ .|+-.++...=-++++-+..|++-++.++|+++
T Consensus 189 VG~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~rs~y 249 (256)
T PF09788_consen 189 VGPRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLIRSIY 249 (256)
T ss_pred ccchHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHHHhhe
Confidence 344577877777766654444444432 344333322222333444445566677777764
No 101
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.84 E-value=44 Score=30.19 Aligned_cols=43 Identities=28% Similarity=0.708 Sum_probs=24.2
Q ss_pred CCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCcccccccccc
Q 024512 58 KLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQY 111 (266)
Q Consensus 58 ~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y 111 (266)
....||.|.+.+- .-+..||. +++| =.=+.++ ..+|++|+..-
T Consensus 157 ~~~~Cr~C~~~~~-~VlllPCr-----Hl~l----C~~C~~~-~~~CPiC~~~~ 199 (207)
T KOG1100|consen 157 RMRSCRKCGEREA-TVLLLPCR-----HLCL----CGICDES-LRICPICRSPK 199 (207)
T ss_pred ccccceecCcCCc-eEEeeccc-----ceEe----ccccccc-CccCCCCcChh
Confidence 3444999977653 36788886 1110 0112222 56799997653
No 102
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.78 E-value=55 Score=24.30 Aligned_cols=44 Identities=34% Similarity=0.624 Sum_probs=26.7
Q ss_pred CeeeEeccCCCCCCc---ccccccCCCcccccHHHHHHHHHhcCCccccccccccc
Q 024512 60 VECRICHEEDEDSNM---EIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYN 112 (266)
Q Consensus 60 ~~CRIC~ee~~d~~l---i~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~ 112 (266)
.+|-||.+..-++-+ -+-|-| ..|-.+-.+. ....|+||+.+.+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmC--------y~Cg~rl~~~-~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMC--------YACGLRLKKA-LHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhH--------HHHHHHHHHc-cCCcCcchhhHHH
Confidence 789999987654322 233433 3454333322 4568999998765
No 103
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.63 E-value=5.5e+02 Score=25.03 Aligned_cols=11 Identities=45% Similarity=0.368 Sum_probs=4.7
Q ss_pred HHHHhHHHHHH
Q 024512 211 LRTIGILLPIY 221 (266)
Q Consensus 211 LraagilLp~y 221 (266)
|-.+-.+|++|
T Consensus 266 lL~~Lqll~i~ 276 (318)
T KOG1607|consen 266 LLLALQLLHIY 276 (318)
T ss_pred HHHHHHHHHHH
Confidence 33344445544
No 104
>PRK08156 type III secretion system protein SpaS; Validated
Probab=21.17 E-value=3.5e+02 Score=26.60 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhc--CCC-chhHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHhh
Q 024512 176 IVAITFMVLLVLRHTLPIIIS--GAG-EYSLTLFTLLILRTIGILLPIYVMVKAFTAI-QRRRHQQ 237 (266)
Q Consensus 176 ~~ai~fm~lLllrh~l~i~~~--~~~-~~~~~lftl~~LraagilLp~yim~r~~~~l-qr~r~~~ 237 (266)
++.+.+.+.++++..++.++. ..+ .....++.-+++..+..++-+++++=.++.. ||++..+
T Consensus 141 v~li~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k 206 (361)
T PRK08156 141 LIVFALTAYVFWKNYKKEIFSQLNGNIVGLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMK 206 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566677777665532 222 2222223233445555555566666666544 5554433
No 105
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.15 E-value=3e+02 Score=26.88 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhhhh--cCCC-chhHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHhh
Q 024512 176 IVAITFMVLLVLRHTLPIII--SGAG-EYSLTLFTLLILRTIGILLPIYVMVKAFTAI-QRRRHQQ 237 (266)
Q Consensus 176 ~~ai~fm~lLllrh~l~i~~--~~~~-~~~~~lftl~~LraagilLp~yim~r~~~~l-qr~r~~~ 237 (266)
++.+.+.+.++++..+.-+. .+.+ .....++.-+++..++.++.+++++=+++.. ||++...
T Consensus 155 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k 220 (358)
T PRK13109 155 FLSVSVVVLLLLRSERAKAVNAMFVDPSQLPELILTVAIRLVSAVAIATIVLVALDLVWARFHWRR 220 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666655442 2222 2233333344555566666677777777554 5544333
No 106
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.07 E-value=62 Score=32.97 Aligned_cols=48 Identities=27% Similarity=0.616 Sum_probs=35.9
Q ss_pred CCCCCCeeeEeccCCCCCCcccccccCCCcccccHHHHHHHHHhcCCccccccccccccC
Q 024512 55 SPSKLVECRICHEEDEDSNMEIPCSCCGSLKYAHRKCVQRWCNEKGDTTCEICREQYNPG 114 (266)
Q Consensus 55 ~~~~~~~CRIC~ee~~d~~li~PC~C~GslkyvH~~CL~~W~~~k~~~~CEiCk~~y~~~ 114 (266)
.......|+||..+. ..-+.||. |..|+..|...+. .|+.|+......
T Consensus 475 l~~~~~~~~~~~~~~--~~~~~~~~--------~~~~l~~~~~~~~--~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 475 LREPNDVCAICYQEM--SARITPCS--------HALCLRKWLYVQE--VCPLCHTYMKED 522 (543)
T ss_pred hhcccCcchHHHHHH--Hhcccccc--------chhHHHhhhhhcc--ccCCCchhhhcc
Confidence 446678999998776 23355665 9999999998764 699998776543
No 107
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=21.06 E-value=46 Score=20.56 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=10.3
Q ss_pred CCccccccccccc
Q 024512 100 GDTTCEICREQYN 112 (266)
Q Consensus 100 ~~~~CEiCk~~y~ 112 (266)
....|+.|++.|.
T Consensus 13 ~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 13 SAKFCPHCGYDFE 25 (26)
T ss_pred hcCcCCCCCCCCc
Confidence 3568999999885
No 108
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.86 E-value=4.3e+02 Score=22.50 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhhhhhcC
Q 024512 180 TFMVLLVLRHTLPIIISG 197 (266)
Q Consensus 180 ~fm~lLllrh~l~i~~~~ 197 (266)
++.++|+.--++.+++++
T Consensus 13 ilgilli~~gI~~Lv~~~ 30 (191)
T PF04156_consen 13 ILGILLIASGIAALVLFI 30 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333344443
No 109
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.75 E-value=52 Score=29.45 Aligned_cols=25 Identities=36% Similarity=0.760 Sum_probs=19.1
Q ss_pred CCCCCeeeEeccCCCC--CCccccccc
Q 024512 56 PSKLVECRICHEEDED--SNMEIPCSC 80 (266)
Q Consensus 56 ~~~~~~CRIC~ee~~d--~~li~PC~C 80 (266)
.....+|-||+|+-+. ..-..||.|
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLC 200 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLC 200 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEE
Confidence 3556789999998654 345789999
No 110
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=20.60 E-value=3.4e+02 Score=21.07 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHh
Q 024512 201 YSLTLFTLLILRTIGILLPIYVMVKAF-TAIQRRRHQ 236 (266)
Q Consensus 201 ~~~~lftl~~LraagilLp~yim~r~~-~~lqr~r~~ 236 (266)
+++.|++.++|-..+++|...++.+=. .+|+++.++
T Consensus 18 dP~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ere 54 (74)
T PF15086_consen 18 DPYEFLTTVLLILTPLFIISAVLSWKLAKAIEKEERE 54 (74)
T ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777766666666655544443322 344444433
No 111
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=20.56 E-value=1.2e+02 Score=23.29 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=12.0
Q ss_pred HHhHHHHHHHHHHHH
Q 024512 213 TIGILLPIYVMVKAF 227 (266)
Q Consensus 213 aagilLp~yim~r~~ 227 (266)
..|++++.|++++.+
T Consensus 45 ~~~~~ii~Yiia~~i 59 (70)
T COG1983 45 LTGFGIIAYIIAALI 59 (70)
T ss_pred chhHHHHHHHHHHHH
Confidence 467788899999875
No 112
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=20.35 E-value=3.6e+02 Score=21.77 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCch---hHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024512 177 VAITFMVLLVLRHTLPIIISGAGEY---SLTLFTLLILRTIGILLPIYVMVKAF 227 (266)
Q Consensus 177 ~ai~fm~lLllrh~l~i~~~~~~~~---~~~lftl~~LraagilLp~yim~r~~ 227 (266)
..+.+.++.++...+++..+..+.. .......+.+.++.+++.+|++++.+
T Consensus 48 ~~il~~l~~l~g~I~~il~~~~~~~~~~~~~~~f~~i~~~i~ll~iiYi~~Kvi 101 (104)
T PF12420_consen 48 IFILPFLVPLIGLIFPILFSACVKIKIPDTNYIFFIIFITIILLVIIYIFIKVI 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHhhc
Confidence 3344444556666666665521111 11222246788899999999999875
No 113
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=20.31 E-value=3.8e+02 Score=21.89 Aligned_cols=25 Identities=16% Similarity=0.507 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHH-HhHHHHHHHHHH
Q 024512 201 YSLTLFTLLILRT-IGILLPIYVMVK 225 (266)
Q Consensus 201 ~~~~lftl~~Lra-agilLp~yim~r 225 (266)
..+|+...+++-+ .|.|+-+++++-
T Consensus 57 ~~~PLilvil~s~v~G~Li~~~~~~~ 82 (98)
T COG5416 57 WELPLILVILGAAVVGALIAMFAGIA 82 (98)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 6788887776665 677776666543
Done!