Query 024513
Match_columns 266
No_of_seqs 160 out of 1261
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:34:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fky_A Glutamine synthetase; b 100.0 1.5E-82 5.1E-87 593.3 20.8 263 1-266 95-357 (370)
2 2d3a_A Glutamine synthetase; l 100.0 5.2E-82 1.8E-86 587.1 21.5 266 1-266 91-356 (356)
3 2ojw_A Glutamine synthetase; a 100.0 1.3E-80 4.5E-85 582.7 21.4 263 1-266 117-383 (384)
4 3qaj_A Glutamine synthetase; A 100.0 8.6E-81 3E-85 593.3 19.9 253 1-265 93-358 (444)
5 4hpp_A Probable glutamine synt 100.0 1.8E-79 6.3E-84 583.7 20.0 247 1-265 93-357 (443)
6 3ng0_A Glutamine synthetase; G 100.0 1.6E-78 5.5E-83 582.2 23.6 259 1-265 91-386 (473)
7 4acf_A Glutamine synthetase 1; 100.0 1.1E-75 3.7E-80 564.8 24.5 259 1-265 100-399 (486)
8 1f52_A Glutamine synthetase; A 100.0 9.8E-76 3.4E-80 562.6 22.7 258 1-265 88-382 (468)
9 2j9i_A Glutamate-ammonia ligas 100.0 4.2E-68 1.4E-72 503.4 3.3 234 8-265 91-344 (421)
10 3o6x_A Glutamine synthetase; t 100.0 2.1E-58 7.2E-63 452.8 17.7 248 2-265 167-500 (729)
11 1r8g_A Hypothetical protein YB 98.5 4.6E-06 1.6E-10 77.2 16.8 130 33-198 11-168 (372)
12 2gwd_A Glutamate cysteine liga 98.2 5.5E-05 1.9E-09 71.7 17.6 152 15-198 16-213 (449)
13 3ln6_A Glutathione biosynthesi 93.0 0.8 2.7E-05 45.9 12.1 99 98-197 54-194 (750)
14 2fao_A Probable ATP-dependent 91.0 2.3 7.9E-05 38.0 11.3 126 89-230 111-243 (309)
15 3ln7_A Glutathione biosynthesi 87.7 3.7 0.00013 41.2 11.3 97 98-196 53-194 (757)
16 1nxi_A Conserved hypothetical 83.3 2.1 7.3E-05 33.4 5.7 90 21-141 22-114 (132)
17 2iru_A Putative DNA ligase-lik 80.9 5.3 0.00018 35.6 7.9 126 89-230 105-245 (303)
18 1zpv_A ACT domain protein; str 80.5 1.8 6.3E-05 30.5 4.1 66 80-147 17-82 (91)
19 1va6_A Glutamate--cysteine lig 74.2 14 0.00047 35.4 9.2 38 98-135 56-94 (518)
20 1u8s_A Glycine cleavage system 62.1 8.9 0.00031 31.0 4.6 67 79-147 104-178 (192)
21 3ose_A Serine/threonine-protei 54.9 21 0.00071 27.1 5.2 63 78-140 39-120 (120)
22 3nzt_A Glutamate--cysteine lig 54.8 32 0.0011 32.9 7.6 19 31-49 30-48 (525)
23 1v5s_A MAP/microtubule affinit 54.1 44 0.0015 25.6 7.0 62 79-140 40-120 (126)
24 4hhu_A OR280; engineered prote 51.1 80 0.0027 24.1 9.0 78 75-163 52-129 (170)
25 2nyi_A Unknown protein; protei 49.2 19 0.00067 29.2 4.6 67 79-148 104-176 (195)
26 3tc3_A UV damage endonuclease; 44.6 47 0.0016 29.5 6.6 63 82-150 62-126 (310)
27 3nw0_A Non-structural maintena 41.0 99 0.0034 26.1 7.9 65 78-143 45-117 (238)
28 1u8s_A Glycine cleavage system 40.5 1.4E+02 0.0046 23.7 9.6 65 80-147 18-82 (192)
29 1q02_A Sequestosome 1; helical 31.2 24 0.00084 22.9 1.8 23 9-33 1-23 (52)
30 2lqj_A Mg2+ transport protein; 27.1 96 0.0033 22.3 4.8 64 78-144 20-84 (94)
31 3t66_A Nickel ABC transporter 22.6 1.8E+02 0.0062 26.6 7.0 34 79-112 344-383 (496)
32 4e8d_A Glycosyl hydrolase, fam 20.4 1.1E+02 0.0038 29.6 5.0 58 81-150 33-95 (595)
No 1
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-82 Score=593.26 Aligned_cols=263 Identities=61% Similarity=1.093 Sum_probs=230.1
Q ss_pred CceeeCCCCCCCCCChHHHHHHHHccccccCCcceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCCccccccchhhHHH
Q 024513 1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRD 80 (266)
Q Consensus 1 ~~d~~~~~g~p~~~~pR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (266)
+||++++||+|++.|||++|||++++++ |+++++|+|+|||||+.+.. +.++|.++.|.++++||+....+..+.++
T Consensus 95 lcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~~-~~~~p~~~~p~~~g~yy~~~~~~~~~~~~ 171 (370)
T 3fky_A 95 LAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYDD-VYGWPKGGYPAPQGPYYCGVGAGKVYARD 171 (370)
T ss_dssp EEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTSS-BTTCCTTSBCSCSSSCTTCCSTTTCSCHH
T ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccCCC-cccCCCCCccCCCCccccccchhhHHHHH
Confidence 6999999999999999999999999877 99999999999999997643 55777666788899998877655555689
Q ss_pred HHHHHHHHHHHcCceeeeeeCCCCCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEcccCCCCCCCCceeeE
Q 024513 81 IVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHA 160 (266)
Q Consensus 81 ~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpKP~~~d~~GsG~H~ 160 (266)
++++|+++|+++||+||++|+|+|||||||++.|++++++||++++||++||+||++||++|||||||+.+|++|||||+
T Consensus 172 i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ATFmpKP~~gd~~GSG~H~ 251 (370)
T 3fky_A 172 MIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHA 251 (370)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSSSSCCCBEEE
T ss_pred HHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcEEEEcccccCCCCCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985489999999
Q ss_pred eEeccccCCCCchHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCccceeeccCCCCceEEeCcCCCCCCCceeE
Q 024513 161 NYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 240 (266)
Q Consensus 161 h~Sl~~~~~~~g~~~~~~~iaGl~L~h~~al~a~~~nsYkRl~~~~~a~~p~~~~WG~~NR~a~iRvp~~~~~~~~~riE 240 (266)
|+|||+.++++|++.+++||+||+++|+++|++|+.||||||+|++|||.+.+++||.+||+++||||...+..+++|||
T Consensus 252 H~Sl~~~~~~~g~~~~~~~i~gl~~~h~~~i~a~~~nSYkRL~~~~eap~~~~~sWG~~NRsa~iRIp~~~~~~~~~riE 331 (370)
T 3fky_A 252 NVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFE 331 (370)
T ss_dssp EEECHHHHSSSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEEESCTTSSEEECHHHHHHTCCCEE
T ss_pred eeccccccCCCCHHHHHHHHHHHHHHhHHHHHHHccchhhhcCCCccCCCcccceEecCCCceeEEecCCCCCCCCCEEE
Confidence 99999865557788889999999449999999999999999999999995446999999999999999754322346999
Q ss_pred eCCCCCCCCHHHHHHHHHHHhhcCCC
Q 024513 241 DRRPASNMDPYVVTSMIAETTILWKP 266 (266)
Q Consensus 241 ~R~~da~aNPYLalAailaAgl~g~~ 266 (266)
+|+||++|||||++|+||+|||+|++
T Consensus 332 ~R~pda~aNPYLa~Aailaagl~Gi~ 357 (370)
T 3fky_A 332 DRRPASNIDPYLVTGIMCETVCGAID 357 (370)
T ss_dssp ECCCBTTCCHHHHHHHHHHHHHCCBT
T ss_pred ECCCCCCCCHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999974
No 2
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*
Probab=100.00 E-value=5.2e-82 Score=587.12 Aligned_cols=266 Identities=86% Similarity=1.502 Sum_probs=237.3
Q ss_pred CceeeCCCCCCCCCChHHHHHHHHccccccCCcceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCCccccccchhhHHH
Q 024513 1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRD 80 (266)
Q Consensus 1 ~~d~~~~~g~p~~~~pR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (266)
+||++++||+|++.|||++|||+++++++.|+++++|+|+|||||+++...+.+++..+.|.++++||+..+.+..+.++
T Consensus 91 ~cd~~~~dG~P~~~~pR~iLkr~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~~~~~~g~p~~~g~y~~~~~~~~~~~~~ 170 (356)
T 2d3a_A 91 MCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRD 170 (356)
T ss_dssp EEEEECTTSCBCTTCCHHHHHHHHHSHHHHHHCCEEEEEEEEEEEETTTCCBTTSCTTSBCSCSSSCTTCCSTTTCCCHH
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCeeEEecceEEEEEecCCCcccccccCCCCCCCCCcCcCcccchHHHHH
Confidence 59999999999999999999999999999999999999999999997643344555445667788998888766545689
Q ss_pred HHHHHHHHHHHcCceeeeeeCCCCCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEcccCCCCCCCCceeeE
Q 024513 81 IVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHA 160 (266)
Q Consensus 81 ~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpKP~~~d~~GsG~H~ 160 (266)
++++|+++|+++||+||++|||+|||||||++.|++++++||++++||++||+||++||++|||||||+.+|++|||||+
T Consensus 171 ~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~~d~~GSG~H~ 250 (356)
T 2d3a_A 171 IVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHT 250 (356)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHHHTEEEECCSCSSCSSSCCCBEEE
T ss_pred HHHHHHHHHHHCCCCEEEeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEECCCccCCCCCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999964589999999
Q ss_pred eEeccccCCCCchHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCccceeeccCCCCceEEeCcCCCCCCCceeE
Q 024513 161 NYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 240 (266)
Q Consensus 161 h~Sl~~~~~~~g~~~~~~~iaGl~L~h~~al~a~~~nsYkRl~~~~~a~~p~~~~WG~~NR~a~iRvp~~~~~~~~~riE 240 (266)
|+|||+.++++|.+.+..++.+++++|+++|++|++||||||+|++|+|.+.+++||.+||+++||||.....++++|||
T Consensus 251 H~Sl~~~~~~~g~~~f~~~~~~l~l~h~~~l~a~~~nSYkRL~pg~eap~~~~~swG~~NRsa~iRIp~~~~~~~~~riE 330 (356)
T 2d3a_A 251 NYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFE 330 (356)
T ss_dssp EEECTTTSSTTHHHHHHHHHHHHHHTHHHHHTTSCTTHHHHCSSSSSCCCTTCCCEESSCTTSSEECCHHHHHTTCCCEE
T ss_pred EechhhhccCCCHHHHHHHHHHHHHHHHHHHHhHccChHHHccCCccCCCcceeEEeccCCeeeEEEccCCCCCCCCEEE
Confidence 99998754335677777888888899999999998899999999999986679999999999999999643222467999
Q ss_pred eCCCCCCCCHHHHHHHHHHHhhcCCC
Q 024513 241 DRRPASNMDPYVVTSMIAETTILWKP 266 (266)
Q Consensus 241 ~R~~da~aNPYLalAailaAgl~g~~ 266 (266)
+|+||++|||||++||+|+|||+++|
T Consensus 331 ~R~pd~~aNPYLa~Aailaagl~~~~ 356 (356)
T 2d3a_A 331 DRRPASNMDPYVVTSMIAETTIVWKP 356 (356)
T ss_dssp ECCCBTTCCHHHHHHHHHHHHTTCC-
T ss_pred EcCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999998
No 3
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Probab=100.00 E-value=1.3e-80 Score=582.67 Aligned_cols=263 Identities=58% Similarity=1.095 Sum_probs=230.1
Q ss_pred CceeeCCCCCCCCCChHHHHHHHHccccccCCcceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCCccccccchhhHHH
Q 024513 1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRD 80 (266)
Q Consensus 1 ~~d~~~~~g~p~~~~pR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (266)
+||++++||+|++.|||++|||++++++ |+++++|+|+|||||+.+.. +.+++..+.|.++++||+....++.+.++
T Consensus 117 ~cd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~~-~~~~~~~g~p~~~g~y~~~~~~~~~~~~~ 193 (384)
T 2ojw_A 117 LCEVFKYNRRPAETNLRHTCKRIMDMVS--NQHPWFGMEQEYTLMGTDGH-PFGWPSNGFPGPQGPYYCGVGADRAYGRD 193 (384)
T ss_dssp EEEEECTTSCBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEEC-CCS-BTTCCTTSCCSCSSSCTTCCSTTTCCCHH
T ss_pred EEEEECCCCCCCCcCHHHHHHHHHHHHh--CCEEEEEeeeEEEEEccCCC-cccccCCCccCCCCCCCcccccchHHHHH
Confidence 6999999999999999999999999997 89999999999999987643 33555545677889998877666545679
Q ss_pred HHHHHHHHHHHcCceeeeeeCCCCCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEcccCCCCCCCCceeeE
Q 024513 81 IVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHA 160 (266)
Q Consensus 81 ~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpKP~~~d~~GsG~H~ 160 (266)
++++|+++|+++||+||++|+|+|||||||++.|++++++||++++||++||+||++||++|||||||+.+|++|||||+
T Consensus 194 ~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~Gl~aTFmpKP~~~d~~GSG~H~ 273 (384)
T 2ojw_A 194 IVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHT 273 (384)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHTCEEECCSCSSCSSSCCCBEEE
T ss_pred HHHHHHHHHHHCCCCeEeeecCCCCcceEEEcCCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccCCCCCCCeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999974579999999
Q ss_pred eEeccccCCCCchHHHHHHHHHHHHHHHHHHhhh----hccccccCCCCCCCCCccceeeccCCCCceEEeCcCCCCCCC
Q 024513 161 NYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGK 236 (266)
Q Consensus 161 h~Sl~~~~~~~g~~~~~~~iaGl~L~h~~al~a~----~~nsYkRl~~~~~a~~p~~~~WG~~NR~a~iRvp~~~~~~~~ 236 (266)
|+||++.++++|.+.++++++||+++|++++++| +.||||||+|++|+|+|++++||.+||+++||||...++.++
T Consensus 274 H~Sl~~~~~~~g~n~f~~~~~gl~~~h~~~i~a~~p~~~~nsykRL~pg~ea~~~~~~sWG~~NRsa~iRIp~~~~~~~~ 353 (384)
T 2ojw_A 274 NFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKK 353 (384)
T ss_dssp EEECHHHHSTTTHHHHHHHHHHHHTCHHHHHHHSSTTTTTTGGGTCC-----CCTTCCCEEETCTTSSEEECHHHHHHTC
T ss_pred EeehhhhcCCCchhHHHHHHHHHHHHHHHHheEeccCCCCCchhhccCCcccCCCceEEeecccCCceEEeecCCCCCCC
Confidence 9999864333578889999999989999999999 248999999999999878999999999999999964322235
Q ss_pred ceeEeCCCCCCCCHHHHHHHHHHHhhcCCC
Q 024513 237 GYFEDRRPASNMDPYVVTSMIAETTILWKP 266 (266)
Q Consensus 237 ~riE~R~~da~aNPYLalAailaAgl~g~~ 266 (266)
+|||+|+||++|||||++||+|+|||+++|
T Consensus 354 ~riE~R~pd~~aNPYLa~Aailaagl~~~~ 383 (384)
T 2ojw_A 354 GYFEDRRPSANCDPFSVTEALIRTCLLNET 383 (384)
T ss_dssp SCEEECCCBTTCCHHHHHHHHHHHHTSCCC
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 799999999999999999999999999986
No 4
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT AMP; 3.05A {Bacillus subtilis}
Probab=100.00 E-value=8.6e-81 Score=593.25 Aligned_cols=253 Identities=24% Similarity=0.333 Sum_probs=227.0
Q ss_pred CceeeCCCCCCCCCChHHHHHHHHccccccCCc-ceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCCccccccchhhHH
Q 024513 1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEE-PWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGR 79 (266)
Q Consensus 1 ~~d~~~~~g~p~~~~pR~~L~~~~~~~~~~G~~-~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (266)
+||++++||+|++.|||++|||++++++++|++ +.+|+|+|||||+.+++ |.+. ..+.++++||+..+.+. ..
T Consensus 93 ~cd~~~~dG~p~~~~pR~iLkr~~~~~~~~G~~~~~~g~E~EF~l~~~~~~---g~~~-~~~~~~~~y~~~~~~d~--~~ 166 (444)
T 3qaj_A 93 ICDIYNPDGTPFEGDPRNNLKRILKEMEDLGFSDFNLGPEPEFFLFKLDEK---GEPT-LELNDKGGYFDLAPTDL--GE 166 (444)
T ss_dssp EBCCBCTTSCBCSSCHHHHHHHHHHHHHTTTCCEEEEEEEECEEEEEECSS---SCEE-EEESCCCCTTCCTTTSC--CT
T ss_pred EEEEECCCCCCCCCChHHHHHHHHHHHHHcCCCeeeEEeceEEEEEecCCC---CCCC-CcCcCCCCccccCCCcc--hH
Confidence 699999999999999999999999999999999 99999999999997654 3322 13556788888777664 35
Q ss_pred HHHHHHHHHHHHcCceeeeeeCCCCCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEcccCCCCCCCCceee
Q 024513 80 DIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAH 159 (266)
Q Consensus 80 ~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpKP~~~d~~GsG~H 159 (266)
+++.+|+++|+++||+|+++|+|+|||||||++.|++++++||++++||++||+||++||++|||||||+.+ .+|||||
T Consensus 167 ~~~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~~-~~GsG~H 245 (444)
T 3qaj_A 167 NCRRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYAGAVRSCDDIQTFKLVVKTIARKHGLHATFMPKPLFG-VNGSGMH 245 (444)
T ss_dssp THHHHHHHHHHTTTCCEEEEEECSSTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTEEEECCSCSSTT-SCCCCEE
T ss_pred HHHHHHHHHHHHCCCCeEEeEcCcCCCcEEEecCCChHHHHHHHHHHHHHHHHHHHHHcCCEEEEcCCcCCC-CCCCcce
Confidence 677888889999999999999999999999999999999999999999999999999999999999999994 7999999
Q ss_pred EeEeccccC-----C---CCchH-HHHHHHHHHHHHHHHHHhhhhc---cccccCCCCCCCCCccceeeccCCCCceEEe
Q 024513 160 ANYSTKSMR-----N---DGGID-VIKKAIEKLGKRHGEHIAAYGE---GNERRLTGRHETADINTFSWGVANRGASIRV 227 (266)
Q Consensus 160 ~h~Sl~~~~-----~---~~g~~-~~~~~iaGl~L~h~~al~a~~~---nsYkRl~~~~~a~~p~~~~WG~~NR~a~iRv 227 (266)
+|+|||+.. + +.|++ .+++||+|| |+|++++++|++ ||||||+|++||| ++++||.+||+++|||
T Consensus 246 ~H~Sl~~~g~n~f~~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~PtvNSYkRl~pg~~AP--~~~~Wg~~NRsa~iRi 322 (444)
T 3qaj_A 246 CNLSLFKNGVNAFFDENADLQLSETAKHFIAGI-VKHATSFTAVTNPTVNSYKRLVPGYEAP--CYVAWSAQNRSPLIRI 322 (444)
T ss_dssp EEEEEEETTEETTCCTTSSSSCCHHHHHHHHHH-HHTHHHHHHHHSCSSTHHHHSCTTSSSS--CBCCEESSCSSSSEEC
T ss_pred eeeccccCCCcccCCCCcccchHHHHHHHHHHH-HHHHHHHHHHHCCCCcccccCCCCCcCC--CcceeecCCCcceEee
Confidence 999999732 1 12464 779999999 999999999997 8999999999998 8999999999999999
Q ss_pred CcCCCCCCCceeEeCCCCCCCCHHHHHHHHHHHhhcCC
Q 024513 228 GRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 265 (266)
Q Consensus 228 p~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~ 265 (266)
|...+ .++|||+|+||++|||||++||+|+|||+|+
T Consensus 323 p~~~~--~~~RiE~R~pd~~aNPYLa~Aa~LaAGldGI 358 (444)
T 3qaj_A 323 PASRG--ISTRVEVRSVDPAANPYLALSVLLAAGLDGI 358 (444)
T ss_dssp CSCCG--GGCCEEECCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCC--CCceEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 96433 4679999999999999999999999999985
No 5
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.8e-79 Score=583.68 Aligned_cols=247 Identities=17% Similarity=0.132 Sum_probs=224.6
Q ss_pred CceeeCCCCCCCCCChHHHHHHHHccccccCCcceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCCccccccchhhHHH
Q 024513 1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRD 80 (266)
Q Consensus 1 ~~d~~~~~g~p~~~~pR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (266)
+||++++||+|++.|||++|||++++++++|+++++|+|+|||||+. .|.+.++||+..+.+. ..+
T Consensus 93 ~cd~~~~dG~p~~~~pR~~L~r~~~~~~~~G~~~~~g~E~EF~l~~~------------~p~~~~~~y~~~~~~~--~~~ 158 (443)
T 4hpp_A 93 HGNLVETDGTPWPACPRSLLRAEVERYRDSGLQVIAAFEHEFSLLGL------------PGERPAAAFSLQAQRA--AGQ 158 (443)
T ss_dssp EEEEECTTSCBCTTCHHHHHHHHHHHHHHTTEEEEEEEEEEEEEECC------------CSSSCCCTTCHHHHHH--TTT
T ss_pred EEEEECCCCCCCCCChHHHHHHHHHHHHHcCCeEEEEeeeEEEEecc------------ccCCCCccCCCCcccc--hHH
Confidence 69999999999999999999999999999999999999999999962 2345678888776554 478
Q ss_pred HHHHHHHHHHHcCceeeeeeCCCCCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEcccCCCCCCCCceeeE
Q 024513 81 IVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHA 160 (266)
Q Consensus 81 ~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpKP~~~d~~GsG~H~ 160 (266)
++++|+++|+++||+|+++|+|+|||||||++.|++++++||++++||++||+||++||++|||||||+.+ .+|||||+
T Consensus 159 ~~~~i~~~l~~~Gi~ve~~h~E~~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~vA~~~G~~aTFmpKP~~~-~~GsG~H~ 237 (443)
T 4hpp_A 159 FPGWLVSALAQAGTEPEMFLPEYGQRQYEVTCRPAQGVAAADRAVNVREVTREVARQMGLRTCFAPLPAPG-AVTNGVHL 237 (443)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSTTEEEEEECCEETHHHHHHHHHHHHHHHHHHHHHTCEEECSSSSSTT-CCCCCEEE
T ss_pred HHHHHHHHHHHCCCCeEEeecCCCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccCCC-CCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999994 89999999
Q ss_pred eEeccccCC------C---CchH-HHHHHHHHHHHHHHHHHhhhhc---cccccCCCCCCCCCccceeeccCCCCceEEe
Q 024513 161 NYSTKSMRN------D---GGID-VIKKAIEKLGKRHGEHIAAYGE---GNERRLTGRHETADINTFSWGVANRGASIRV 227 (266)
Q Consensus 161 h~Sl~~~~~------~---~g~~-~~~~~iaGl~L~h~~al~a~~~---nsYkRl~~~~~a~~p~~~~WG~~NR~a~iRv 227 (266)
|+|||+.++ + .|++ .+++||+|| |+|++++++|++ ||||||+|++||| ++++||.+||+++|||
T Consensus 238 h~Sl~~~~G~n~f~~~~~~~~lS~~~~~fiaGl-l~h~~~l~a~~~P~~NSYkRL~pg~~AP--~~~~WG~~NRsa~iRi 314 (443)
T 4hpp_A 238 HLSLQHADGSPLLYEPGRPNDLSELGEHWAAGV-LAHLPALCALTAPTAASYLRLKPHHWSA--AYACLGLRNREAALRI 314 (443)
T ss_dssp EEEEEETTSCBSSBCTTSGGGBCHHHHHHHHHH-HHHHHHHHHHHSCSGGGHHHHSCSTTCC--CBCCEESSCTTSSEEE
T ss_pred eeeeecCCCCccccCCCCccchhHHHHHHHHHH-HHHHHHHHHHhCCCCcchhccCCCCcCC--CcceeccCCCceeEEe
Confidence 999997531 1 2454 679999999 999999999997 8999999999998 8999999999999999
Q ss_pred CcCC---CC--CCCceeEeCCCCCCCCHHHHHHHHHHHhhcCC
Q 024513 228 GRDT---EK--EGKGYFEDRRPASNMDPYVVTSMIAETTILWK 265 (266)
Q Consensus 228 p~~~---~~--~~~~riE~R~~da~aNPYLalAailaAgl~g~ 265 (266)
|... +. .+++|||+|+||++|||||++||+|+|||+|+
T Consensus 315 p~~~~~~~~~~~~~~riE~R~pd~~aNPYLa~AaiLaAGl~GI 357 (443)
T 4hpp_A 315 CPVVSVGGKPLGKQYNLEFRPMDATTCPHLAMAAVLIAGRLGI 357 (443)
T ss_dssp ECCCCSSSCCSSTTCEEEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCccccccEEEEcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 9764 22 24679999999999999999999999999985
No 6
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}
Probab=100.00 E-value=1.6e-78 Score=582.16 Aligned_cols=259 Identities=24% Similarity=0.297 Sum_probs=225.9
Q ss_pred CceeeCC-CCCCCCCChHHHHHHHHccccccCC--cceEeeeeeEEEecCCC-----C--------CCCCCCC-------
Q 024513 1 MCDAYTP-AGEPIPTNKRFNAAKVFGHPDVVAE--EPWYGIEQEYTLLQKDI-----N--------WPLGWPV------- 57 (266)
Q Consensus 1 ~~d~~~~-~g~p~~~~pR~~L~~~~~~~~~~G~--~~~~g~E~EF~l~~~~~-----~--------~~~~~~~------- 57 (266)
+||++++ ||+|++.|||++|||++++++++|+ ++.+|+|+|||||+... . ...+|+.
T Consensus 91 ~cd~~~~~~g~p~~~~pR~iLkr~~~~~~~~G~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (473)
T 3ng0_A 91 ICSIKEPRTGEWYNRDPRTIAAKAAEYLRGTGIADTVYFGPEAEFFLFDDIRFGQTENSSYYFADSVEGRWNTGREEEGG 170 (473)
T ss_dssp EEEEECTTTSSBCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTCGGGTTCCCTTC
T ss_pred EEEEeECCCCCCCCCChHHHHHHHHHHHHHcCCCcceEEEeeeEEEEEeecccccccccccccccccccccccccccccC
Confidence 5999998 9999999999999999999999876 89999999999998521 0 0001110
Q ss_pred --CCCCCCCCCCccccccchhhHHHHHHHHHHHHHHcCceeeeeeCCCC-CCceeEecCCCchhHHHHHHHHHHHHHHHH
Q 024513 58 --GGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVM-PGQWEFQVGPCVGISSGDQLWMARYILERI 134 (266)
Q Consensus 58 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~g-pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~v 134 (266)
+..+.++++||+..+.+. ..+++++|+++|+++||+||++|||+| ||||||++.|++++++||++++||++||+|
T Consensus 171 ~~g~~~~~~~~y~~~~~~d~--~~~~~~~i~~~l~~~Gi~ve~~h~E~~~pGQ~Ei~~~~~~~l~aAD~~~~~k~~vk~v 248 (473)
T 3ng0_A 171 NLGYKPGYKQGYFPVAPTDT--AQDIRTEMLLTMAAFGVPIEKHHHEVASGGQNELGIKFDKLVNSADNLMIYKYVIKNV 248 (473)
T ss_dssp CCCCCCCTTCCSSCCTTTCC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCccccccCccch--hHHHHHHHHHHHHHCCCCeEEeecCcCCCCceEEEccCCCHHHHHHHHHHHHHHHHHH
Confidence 112456778888776665 478999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHcCceEEEcccCCCCCCCCceeeEeEeccccCC-------CCch-HHHHHHHHHHHHHHHHHHhhhhc---cccccCC
Q 024513 135 TEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRN-------DGGI-DVIKKAIEKLGKRHGEHIAAYGE---GNERRLT 203 (266)
Q Consensus 135 A~~hGl~atFmpKP~~~d~~GsG~H~h~Sl~~~~~-------~~g~-~~~~~~iaGl~L~h~~al~a~~~---nsYkRl~ 203 (266)
|++||++|||||||+.+ .+|||||+|+|||+... ..|+ ..+++||+|| |+|+++|+||++ ||||||+
T Consensus 249 A~~~G~~aTFmpKP~~~-~~GSG~H~H~Sl~~~g~n~F~~~~~~~lS~~~~~fiaGl-L~h~~~l~a~~~Pt~NSYkRL~ 326 (473)
T 3ng0_A 249 AKKYGKTVTFMPKPIFN-DNGSGMHVHQSLWKDGQPLFAGDKYAGFSQMGLWYIGGI-LKHAPALLAFTNPTTNSYKRLV 326 (473)
T ss_dssp HHHTTCEEECCSCSSTT-SCCCCEEEEEEEEETTEETTBSSSGGGBCHHHHHHHHHH-HHHHHHHHHHHSCSTTHHHHBB
T ss_pred HHHhCCEEEEcCcccCC-CCCCeeEEEEeeccCCccccCCCCccchhHHHHHHHHHH-HHHHHHHHHHhCCCcchhhccc
Confidence 99999999999999995 79999999999996421 1345 3679999999 999999999997 8999999
Q ss_pred CCCCCCCccceeeccCCCCceEEeCcCCCCCCCceeEeCCCCCCCCHHHHHHHHHHHhhcCC
Q 024513 204 GRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 265 (266)
Q Consensus 204 ~~~~a~~p~~~~WG~~NR~a~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~ 265 (266)
|++||| ++++||.+||+++||||.....++++|||+|+||++|||||++||+|+|||+|+
T Consensus 327 pg~~AP--~~~~Wg~~NRsa~iRip~~~~~~~~~RiE~R~pd~~aNPYLa~Aa~LaAGldGI 386 (473)
T 3ng0_A 327 PGFEAP--VNLAYSQGNRSASVRIPLSGGNPKAKRLEFRCPDATSNPYLAFAAMLCAGIDGI 386 (473)
T ss_dssp TTTBCC--CBCCEEESCTTSSEEECCCSSCGGGCCEEECSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCcCc--cceeeeccCCcCceeeeccCCCCCcceEEeecCCCCCCHHHHHHHHHHHHHHHH
Confidence 999998 899999999999999997533334679999999999999999999999999985
No 7
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*
Probab=100.00 E-value=1.1e-75 Score=564.81 Aligned_cols=259 Identities=22% Similarity=0.267 Sum_probs=223.4
Q ss_pred CceeeCC-CCCCCCCChHHHHHHHHccccccC--CcceEeeeeeEEEecCCCC------------------------CCC
Q 024513 1 MCDAYTP-AGEPIPTNKRFNAAKVFGHPDVVA--EEPWYGIEQEYTLLQKDIN------------------------WPL 53 (266)
Q Consensus 1 ~~d~~~~-~g~p~~~~pR~~L~~~~~~~~~~G--~~~~~g~E~EF~l~~~~~~------------------------~~~ 53 (266)
+|+++++ +|+|++.|||++||++++++++.| +++.+|+|+|||||++... ...
T Consensus 100 ~~~~~d~~~g~P~~~~pR~iLk~~~~~~~~~g~~~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 179 (486)
T 4acf_A 100 NFFVHDPFTLEPYSRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEAD 179 (486)
T ss_dssp EEEEECTTTCCBCTTCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTT
T ss_pred EEEEeeCCCCCCCCCCchHHHHHHHHHHHHcCCcceecccceeEEEEeccccccccccCCcccCCccccccCCCCcccCC
Confidence 3778875 899999999999999999998865 5788999999999975210 011
Q ss_pred CCCCCCC-CCCCCCCccccccchhhHHHHHHHHHHHHHHcCceeeeeeCCCCC-CceeEecCCCchhHHHHHHHHHHHHH
Q 024513 54 GWPVGGY-PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMP-GQWEFQVGPCVGISSGDQLWMARYIL 131 (266)
Q Consensus 54 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~gp-GQ~Ei~l~~~~~l~aaD~~~~~r~~i 131 (266)
+.|..+. +...+.||+..+.+. ..+++++++++|+++||+|+++|+|+|| |||||++.|+++|++||++++||++|
T Consensus 180 g~p~~~~~~~~~~~y~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~gp~GQ~Ei~~~~~~~l~aAD~~~~~k~~v 257 (486)
T 4acf_A 180 GSPNRGYKVRHKGGYFPVAPNDQ--YVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYII 257 (486)
T ss_dssp SCBCCCCCBCTTCCSSBCTTTSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccccCCccccCCcchh--HHHHHHHHHHHHHhCCceEEeeeeeeeccceeEEeccCcchhhhhhHHHHHHHHH
Confidence 2222222 234556777766655 4789999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHcCceEEEcccCCCCCCCCceeeEeEeccccCC--------CCch-HHHHHHHHHHHHHHHHHHhhhhc---ccc
Q 024513 132 ERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRN--------DGGI-DVIKKAIEKLGKRHGEHIAAYGE---GNE 199 (266)
Q Consensus 132 k~vA~~hGl~atFmpKP~~~d~~GsG~H~h~Sl~~~~~--------~~g~-~~~~~~iaGl~L~h~~al~a~~~---nsY 199 (266)
|+||++||+.|||||||+.+ .+|||||+|+|||+.+. ..|+ ..+++||+|| |+|++++++|++ |||
T Consensus 258 k~vA~~~G~~aTFmpKP~~~-~~GsG~H~H~Sl~~~g~n~f~~~~~~~~lS~~~~~fiaGl-l~h~~~l~a~~~PtvNSY 335 (486)
T 4acf_A 258 KNTAWQNGKTVTFMPKPLFG-DNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGL-LHHAPSLLAFTNPTVNSY 335 (486)
T ss_dssp HHHHHHTTCEEECCSCSSTT-SCCCCEEEEEEEEETTEESSBCTTSGGGBCHHHHHHHHHH-HHHHHHHHHHHSCSTTHH
T ss_pred HHHHHHcCCeEEEeeccccC-CCcccceeeeeeccCCCccccccccccccchHHHHHHHHH-HHhhhcceeeecCCCcch
Confidence 99999999999999999994 79999999999998531 1345 4789999999 999999999997 899
Q ss_pred ccCCCCCCCCCccceeeccCCCCceEEeCcCCCCCCCceeEeCCCCCCCCHHHHHHHHHHHhhcCC
Q 024513 200 RRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 265 (266)
Q Consensus 200 kRl~~~~~a~~p~~~~WG~~NR~a~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~ 265 (266)
|||+|++||| ++++||.+||+++||||.....++++|||+|+||++|||||++||+|+|||+|+
T Consensus 336 kRl~pg~~AP--~~~~wg~~NRsa~iRip~~~~~~~~~riE~R~pd~~aNPYLalAailaAGldGI 399 (486)
T 4acf_A 336 KRLVPGYEAP--INLVYSQRNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGI 399 (486)
T ss_dssp HHSSTTSSSC--SBSCEEETCTTSSEEECCCTTCTTTCCEEECCCCSSSCHHHHHHHHHHHHHHHH
T ss_pred hccCCCCcCC--ceeEEeccCCCcceEecccCCCCccceeeecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999998 899999999999999997655455789999999999999999999999999985
No 8
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Probab=100.00 E-value=9.8e-76 Score=562.61 Aligned_cols=258 Identities=22% Similarity=0.289 Sum_probs=226.2
Q ss_pred CceeeCC-CCCCCCCChHHHHHHHHccccccCC--cceEeeeeeEEEecCCC-----C--------CCCCCCC-------
Q 024513 1 MCDAYTP-AGEPIPTNKRFNAAKVFGHPDVVAE--EPWYGIEQEYTLLQKDI-----N--------WPLGWPV------- 57 (266)
Q Consensus 1 ~~d~~~~-~g~p~~~~pR~~L~~~~~~~~~~G~--~~~~g~E~EF~l~~~~~-----~--------~~~~~~~------- 57 (266)
+||++++ ||+|++.|||.+||+++++++++|+ ++.+|+|+|||||+++. + ...+++.
T Consensus 88 ~~d~~~~~~G~p~~~~pR~ilk~~~~~l~~~G~~~~~~~G~E~EFfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (468)
T 1f52_A 88 RCDILEPGTLQGYDRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGG 167 (468)
T ss_dssp EEEEECTTTCCCCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTC
T ss_pred EEEEEeCCCCCcCCCCHHHHHHHHHHHHHHcCCCcceEEEeeeEEEEEeccccccCCccccccccccccccCCCcccccc
Confidence 5999999 7999999999999999999999999 89999999999998531 0 0001110
Q ss_pred --CCCCCCCCCCccccccchhhHHHHHHHHHHHHHHcCceeeeeeCCCCCC-ceeEecCCCchhHHHHHHHHHHHHHHHH
Q 024513 58 --GGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPG-QWEFQVGPCVGISSGDQLWMARYILERI 134 (266)
Q Consensus 58 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~gpG-Q~Ei~l~~~~~l~aaD~~~~~r~~ik~v 134 (266)
...|.++++||+..+.+. ..+++++|++.|+++||+|++.|+|+||| ||||++.|++++++||++++||++||+|
T Consensus 168 ~~g~~~~~~~~Y~~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~h~E~apggQ~Ei~~~~~~~l~aAD~~~~~k~~vk~v 245 (468)
T 1f52_A 168 NKGHRPGVKGGYFPVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNV 245 (468)
T ss_dssp CCCCCCCTTCCSSBCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCccCCCcccc--HHHHHHHHHHHHHHCCCCeEEeecCCCCceeEEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence 113566788988887764 57999999999999999999999999996 9999999999999999999999999999
Q ss_pred HHHcCceEEEcccCCCCCCCCceeeEeEeccccCC-----C--Cch-HHHHHHHHHHHHHHHHHHhhhhc---cccccCC
Q 024513 135 TEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRN-----D--GGI-DVIKKAIEKLGKRHGEHIAAYGE---GNERRLT 203 (266)
Q Consensus 135 A~~hGl~atFmpKP~~~d~~GsG~H~h~Sl~~~~~-----~--~g~-~~~~~~iaGl~L~h~~al~a~~~---nsYkRl~ 203 (266)
|++||++|||||||+.+ .+|||||+|+|||++.. + .++ ..+++||+|| |+|+++|++|++ ||||||+
T Consensus 246 A~~hGl~atFmpKP~~g-~~GSG~H~h~Sl~~~g~Nlf~~~~~~~ls~~~~~~iaGl-l~h~~~l~a~~ap~~NSYkRL~ 323 (468)
T 1f52_A 246 AHRFGKTATFMPKPMFG-DNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGV-IKHAKAINALANPTTNSYKRLV 323 (468)
T ss_dssp HHHTTCEEECCSCSSTT-SCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHH-HHTHHHHHHHHSCSGGGGGTSS
T ss_pred HHHhCCEEEEeCCCCCC-CCCCCcceeeccccCCCcccCCCCcchHHHHHHHHHHHH-HHHHHHhHhHhcCCccchhccC
Confidence 99999999999999995 79999999999998421 1 244 3789999999 999999999987 8999999
Q ss_pred CCCCCCCccceeeccCCCCceEEeCcCCCCCCCceeEeCCCCCCCCHHHHHHHHHHHhhcCC
Q 024513 204 GRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 265 (266)
Q Consensus 204 ~~~~a~~p~~~~WG~~NR~a~iRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~ 265 (266)
|++||| ++++||.+||+++||||... ++.++|||+|+||++|||||++||+|+|||+|+
T Consensus 324 pg~eAP--~~i~wg~~NRsa~iRiP~~~-~~~~~riE~R~pd~~aNPYLalaailaagL~GI 382 (468)
T 1f52_A 324 PGYEAP--VMLAYSARNRSASIRIPVVA-SPKARRIEVRFPDPAANPYLCFAALLMAGLDGI 382 (468)
T ss_dssp SCSSCC--CEEEEESSCTTEEEECCCCS-CGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCcCc--CcceeccCCcccceeeCCCC-CCCCCEEEeCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999998 79999999999999999632 224679999999999999999999999999985
No 9
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}
Probab=100.00 E-value=4.2e-68 Score=503.45 Aligned_cols=234 Identities=14% Similarity=0.131 Sum_probs=201.0
Q ss_pred CCCCCCCChHHHHHHHHccccccCC--cceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCCccccccchhhHHHHHHHH
Q 024513 8 AGEPIPTNKRFNAAKVFGHPDVVAE--EPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSH 85 (266)
Q Consensus 8 ~g~p~~~~pR~~L~~~~~~~~~~G~--~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (266)
||+|++.|||.+||+++++++++|+ ++++|+|+|||||+.+.. ..+ ...||+..+.+. ..+++++|
T Consensus 91 dG~P~~~~pR~iLk~~~~~~~~~G~~d~~~~g~E~EF~l~~~~~~-~~~---------~p~y~~~~~~~~--~~~~~~~i 158 (421)
T 2j9i_A 91 GGAAAAASPRYIARAALAQLQAAGAAAGLLSAFIADFCIFGVPEV-INS---------KTISFPASTTAA--AADQPQEA 158 (421)
T ss_dssp EESSCSCCHHHHHHHHHHHHHHTTSCSEECCEECCCCEEESCCEE-EEC---------SSCEEEECCCTT--CTTGGGSC
T ss_pred CCCCCCCChHHHHHHHHHHHHhcCCccCceEEeeeEEEEEecCCC-CCC---------CCCcCCCCcccc--hhHHHHHH
Confidence 8999999999999999999999999 999999999999987542 001 112444444332 34677888
Q ss_pred HHHHHHcCceeeeeeCCCCCCceeEecCCCc-hhHHHHHHHHHHHHHHHHHHHcCceEEEcccCCCCCCCCceeeEeEec
Q 024513 86 YKACLYAGINISGINGEVMPGQWEFQVGPCV-GISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYST 164 (266)
Q Consensus 86 ~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~-~l~aaD~~~~~r~~ik~vA~~hGl~atFmpKP~~~d~~GsG~H~h~Sl 164 (266)
+++|+ +||+|+++|+|+|||||||++.|++ ++++||++++||++||+||++||++||||||| + .+|||| +|+||
T Consensus 159 ~~~l~-~Gi~ve~~h~E~apgQ~Ei~~~~~~~~l~aaD~~~~~k~~vk~vA~~~G~~atFmpKP--~-~~GSG~-~h~Sl 233 (421)
T 2j9i_A 159 AAGGA-AGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNAIASAAAAA--A-AAAAGA-GSHSI 233 (421)
T ss_dssp CTTCC-CSCCCBTTBCCCCCSSCCTTTTTTTCCSCTTTHHHHHHHHHHHHHHTTTCEEECCTTS--S-TTSCCC-BCCEE
T ss_pred HHHHh-CCCCeEEeecCCCCCcEEEecCCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCc--C-CCCCce-EEEec
Confidence 99999 9999999999999999999999999 99999999999999999999999999999999 4 799999 99999
Q ss_pred cccC--C------C--Cch-HHHHHHHHHHHHHHHHHHhhhhc---cccccCCCCCCCCCccce---eeccCCCCceEEe
Q 024513 165 KSMR--N------D--GGI-DVIKKAIEKLGKRHGEHIAAYGE---GNERRLTGRHETADINTF---SWGVANRGASIRV 227 (266)
Q Consensus 165 ~~~~--~------~--~g~-~~~~~~iaGl~L~h~~al~a~~~---nsYkRl~~~~~a~~p~~~---~WG~~NR~a~iRv 227 (266)
|+.+ + + .++ ..+++||+|| |+|++++++|++ |||||. .|+| .++ +||.+||+++|||
T Consensus 234 ~~~~~~G~nlf~~~~~~~ls~~~~~~iaGi-l~h~~~l~a~~~p~~NSYk~~---~~ap--~~~~~~~wG~~NRsa~iRi 307 (421)
T 2j9i_A 234 WDVGAAGTNAFAGASGARATLTGAKWLAGL-LAAAAAAAAAAAAAAAAAAAA---AAGA--AAAAATAWGAAAAACALNI 307 (421)
T ss_dssp ECEEETTEESSCSSSGGGCCHHHHHHHHHH-HHHHHHHHHHHTCSHHHHHHT---SSST--TCCCEEEEESSCTTEEEEE
T ss_pred cccCCCCceeecCCCCccccHHHHHHHHHH-HHHHHHHHHHhCCCccccCCC---CCCC--cCeeeeeeecCCCccceee
Confidence 9732 1 1 134 3679999999 999999999997 899964 4565 566 9999999999999
Q ss_pred CcCCCCCCCceeEeCCCCCCCCHHHHHHHHHHHhhcCC
Q 024513 228 GRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 265 (266)
Q Consensus 228 p~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~ 265 (266)
|.. ..++++|||+|+||++|||||++||+|+|||+|+
T Consensus 308 p~~-~~~~~~riE~R~pd~~aNPYLa~aailaagl~GI 344 (421)
T 2j9i_A 308 AAA-AAAKGAQIENKAGAAAANPYLVLAATVAAGLDGI 344 (421)
T ss_dssp ECC-SSGGGCEEEECSCBTTSCHHHHHHHHHHHHHHHH
T ss_pred ccc-CCCCCCEEEEcCCCCCCChHHHHHHHHHHHhhhh
Confidence 975 1224679999999999999999999999999985
No 10
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=100.00 E-value=2.1e-58 Score=452.82 Aligned_cols=248 Identities=19% Similarity=0.233 Sum_probs=197.5
Q ss_pred ceeeCCCCC------CCCCChHHHHHHHHccccccCC-----cceEeeeeeEEEecCCCC--CCC----CCCCCCCCCCC
Q 024513 2 CDAYTPAGE------PIPTNKRFNAAKVFGHPDVVAE-----EPWYGIEQEYTLLQKDIN--WPL----GWPVGGYPGPQ 64 (266)
Q Consensus 2 ~d~~~~~g~------p~~~~pR~~L~~~~~~~~~~G~-----~~~~g~E~EF~l~~~~~~--~~~----~~~~~~~~~~~ 64 (266)
|.+++.+|+ |+..|||.++|++++.++..|. ++.+|+|+|||||++... .+. |+...+....+
T Consensus 167 ~~f~s~~Ge~ld~ktPL~rsPR~ilk~A~~~Lk~~G~d~~~v~~~~G~E~EFFLfd~~~~~~r~dl~~tGrtl~G~~P~k 246 (729)
T 3o6x_A 167 TIFISYTGEALDYKTPLLKALAAVDKAATEVCQLFDKNITRVFTNLGWEQEYFLVDTSLYNARPDLRLTGRTLMGHSSAK 246 (729)
T ss_dssp BCCC----CCCBSHHHHHHHHHHHHHHHHHHHHTSSSCCCCEEEEEEEEECEEEEEHHHHHSCTTHHHHSSCSCCCC---
T ss_pred EEEEeCCCCcCCCCCchhhCHHHHHHHHHHHHHHcCCCCccceEEEEeccEEEEEecchhccCcccccccccccCCCCCC
Confidence 556666675 5788999999999999999997 699999999999987421 010 11111222234
Q ss_pred C-----CCccccccchhhHHHHHHHHHHHHHHcCceeeeeeCCCCCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcC
Q 024513 65 G-----PYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAG 139 (266)
Q Consensus 65 ~-----~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hG 139 (266)
+ +||...+ +. ..+++++|.+.|+++||+|+++|+|+|||||||++.|++++++||+++++|++||+||++||
T Consensus 247 gq~l~d~Yf~~~p-d~--~~~~~~di~~~L~~~GI~ve~~H~EvaPGQ~EI~~~~~~al~AAD~~~l~K~vvK~VA~~hG 323 (729)
T 3o6x_A 247 DQQLEDHYFGSIP-PR--VTAFMKELEIECHKLGIPVKTRHNEVAPNQFELAPIFENCNLANDHNQLVMDLMKRIARKHH 323 (729)
T ss_dssp -----------CC-HH--HHHHHHHHHHHHHHHTCCEEEECBCSSTTEECCEECCEEHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCCCCc-hh--HHHHHHHHHHHHHHCCCCeEEeecCCCCCceEeccCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4 6776655 32 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcccCCCCCCCCceeeEeEeccccCC------CC---c---h-HHHHHHHHHHHHHHHHHHhhhhc---cccccCC
Q 024513 140 VVLSFDPKPIKGDWNGAGAHANYSTKSMRN------DG---G---I-DVIKKAIEKLGKRHGEHIAAYGE---GNERRLT 203 (266)
Q Consensus 140 l~atFmpKP~~~d~~GsG~H~h~Sl~~~~~------~~---g---~-~~~~~~iaGl~L~h~~al~a~~~---nsYkRl~ 203 (266)
++|||||||+.+ .+|||||+|+|||+.++ ++ + + ..+++||+|| |+|+++|+||++ ||| ||
T Consensus 324 l~ATFMPKP~~g-~nGSG~HvH~SL~~~~G~NLF~~~d~~~~~~~~s~~~~~fIaGV-LkHa~aL~A~~aPt~NSY-RL- 399 (729)
T 3o6x_A 324 FAVLFHEKPYNG-VNGSGKHNNWSLCTDTGINLFAPGKNPKGNMLFLTFLVNVLMMV-HKNQDLLRASIMSAGNSH-RL- 399 (729)
T ss_dssp EEEECSSCSSTT-SCCCBEEEEEEEEETTCCCSSCCCSSTTTCHHHHHHHHHHHHHH-HHTHHHHHHHSCCHHHHT-TS-
T ss_pred CEEEEecccCCC-CCCCcceeeccccCCCCCcCCCCCCCccchhhHHHHHHHHHHHH-HHhHHHHHHHhCCCcccc-cc-
Confidence 999999999995 89999999999997521 11 1 1 2468999999 999999999997 899 99
Q ss_pred CCCCCCCccc----------------ee-----------------ec------------cCCCCceEEeCcCCCCCCCce
Q 024513 204 GRHETADINT----------------FS-----------------WG------------VANRGASIRVGRDTEKEGKGY 238 (266)
Q Consensus 204 ~~~~a~~p~~----------------~~-----------------WG------------~~NR~a~iRvp~~~~~~~~~r 238 (266)
|++|||. + +. || .+|||+++|+.+ .|
T Consensus 400 ~g~EAP~--~iisi~lG~~l~~vl~~i~~~~~g~~~~~~~~~~~~~Gv~~lP~~~~d~~drNRTspfaftG-------nr 470 (729)
T 3o6x_A 400 GANEAPP--AILSIFLGSQLSATLDEIVRQVTNSKMTPEEKTTLKLGIGRIPEILLDTTDRNRTSPFAFTG-------NR 470 (729)
T ss_dssp SSSSCCC--SCCCEECCHHHHHHHHCC---------------------------------CCCSSSSCBCS-------SS
T ss_pred CCCcCCc--hhhhhhhhHHHHHHHHHHHhhccCCCCCccccccccCCcccCCCCccCcCccccCCCccccC-------Ce
Confidence 9999994 4 23 34 499999999873 58
Q ss_pred eEeCCCCCCCC---HHHHHHHHHHHhhcCC
Q 024513 239 FEDRRPASNMD---PYVVTSMIAETTILWK 265 (266)
Q Consensus 239 iE~R~~da~aN---PYLalAailaAgl~g~ 265 (266)
||+|.+|+++| |||++++++|+||+|.
T Consensus 471 fEfR~~Gss~n~a~P~l~lnaivA~~L~gi 500 (729)
T 3o6x_A 471 FEFRAAGSSANCAAAMIAINAAMANQLNEF 500 (729)
T ss_dssp EEETTSBSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEecCCcccchhhHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999873
No 11
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A
Probab=98.49 E-value=4.6e-06 Score=77.20 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=84.1
Q ss_pred cceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCCccccccchhhHHHHHHHHHHHHHHcCcee--eeeeCCCCCCceeE
Q 024513 33 EPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINI--SGINGEVMPGQWEF 110 (266)
Q Consensus 33 ~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v--e~~~~E~gpGQ~Ei 110 (266)
...+|+|.||++++.+.. .+ .++ . .++++ .++=.+ ..+..|..-+|.|+
T Consensus 11 ~~~~GiE~E~~~Vd~~~g----~~--------~~~------~----~~~l~-------~~~~~~~~~~it~E~~~~qlEl 61 (372)
T 1r8g_A 11 PFTLGIELEMQVVNPPGY----DL--------SQD------S----SMLID-------AVKNKITAGEVKHDITESMLEL 61 (372)
T ss_dssp TTCEEEEEEEEEEETTTT----EE--------CSC------C----HHHHT-------TTSSSCSSSEEEECSSSSEEEE
T ss_pred CCceEEEEEEeeECCCCC----Cc--------Ccc------H----HHHHH-------hchhcccCCcccchhhccEEEe
Confidence 469999999999997531 11 011 0 12332 222111 45788999999999
Q ss_pred ecCCC-chhHHHHHHHHHHHHHHHHHHHcCceE---EEcc-----------cCCC---CCCCC--------ceeeEeEec
Q 024513 111 QVGPC-VGISSGDQLWMARYILERITEIAGVVL---SFDP-----------KPIK---GDWNG--------AGAHANYST 164 (266)
Q Consensus 111 ~l~~~-~~l~aaD~~~~~r~~ik~vA~~hGl~a---tFmp-----------KP~~---~d~~G--------sG~H~h~Sl 164 (266)
+..|. +.-++.+.+...+..++++|.++|+.. ++.| ||.- .+..| +|+|+|+++
T Consensus 62 ~t~p~~~~~e~~~~L~~~~~~~~~~a~~~g~~l~~~g~~P~~~~~~~~i~~~~rY~~l~~~~g~~~~~~~i~g~hvhv~~ 141 (372)
T 1r8g_A 62 ATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGC 141 (372)
T ss_dssp ECCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCGGGGCSCCBCEEEEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEecCCCCCCCCccCCCCCchHHHHHHHHHHHHHHhhceeeEEEEeCC
Confidence 99995 566699999999999999999988654 2333 3320 01123 899999999
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHhhhhccc
Q 024513 165 KSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGN 198 (266)
Q Consensus 165 ~~~~~~~g~~~~~~~iaGl~L~h~~al~a~~~ns 198 (266)
-+. ...-..+.-+ +.+.|.++++++||
T Consensus 142 ~~~------~~~~~~~~~~-~~~~p~l~aL~anS 168 (372)
T 1r8g_A 142 ASG------DDAIYLLHGL-SRFVPHFIALSAAS 168 (372)
T ss_dssp SSH------HHHHHHHHHH-HTTHHHHHHHHCCB
T ss_pred CCH------HHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 652 1122344555 77788888887653
No 12
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*
Probab=98.22 E-value=5.5e-05 Score=71.73 Aligned_cols=152 Identities=18% Similarity=0.097 Sum_probs=96.1
Q ss_pred ChHHHHHHHHccccccCCcceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCCccccccchhhHHHHHHHHHHHHHHcCc
Q 024513 15 NKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGI 94 (266)
Q Consensus 15 ~pR~~L~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi 94 (266)
-.+..|.+.++.-...+=...+|+|.||++++.++. .+ .++ . ...++++.+.+ ..|.
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~~iGvE~E~~lVd~~~~----~~--------~~~------~--~~~~lL~~l~~---~~g~ 72 (449)
T 2gwd_A 16 LTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTL----RP--------MKY------D--QIAELLNSIAE---RFEW 72 (449)
T ss_dssp CCHHHHHHHHHTTCCCGGGCCEEEEEEEEEEETTTC----CB--------CCH------H--HHHHHHHHHHH---HHTC
T ss_pred cCHHHHHHHHHhcCCCCCCCeEEEEeEEEeeecCCC----CC--------CCh------H--HHHHHHHHHHH---hhcc
Confidence 344455555554323345789999999999997542 11 011 0 12455555433 2332
Q ss_pred e-------e-------eeeeCCCCCCceeEecCCC-chhHHHHHHHHHHHHHHHHHHHcCceE---EEcc----------
Q 024513 95 N-------I-------SGINGEVMPGQWEFQVGPC-VGISSGDQLWMARYILERITEIAGVVL---SFDP---------- 146 (266)
Q Consensus 95 ~-------v-------e~~~~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA~~hGl~a---tFmp---------- 146 (266)
. + ..+..|.+ +|+|++..|. +..++.+++...+..++++|+++|+.. .+.|
T Consensus 73 ~~~~~~~~~~~l~~~~~~i~~E~~-~qiEl~t~p~~~~~e~~~~l~~~~~~~~~~a~~~g~~l~~~G~~P~~~~~~~~~~ 151 (449)
T 2gwd_A 73 EKVMEGDKIIGLKQGKQSISLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTM 151 (449)
T ss_dssp EEEEETTEEEEEEETTEEEEECTT-CCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTEEEECCSBCSSCCGGGSCCC
T ss_pred CccccccccccccCCCceEEecCC-ceEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCceeeccCCCCCCccccCCC
Confidence 1 1 12677776 9999999995 566788999999999999999999664 2223
Q ss_pred -cCC----------CCCCC-------CceeeEeEeccccCCCCchHHHHHHHHHHHHHHHHHHhhhhccc
Q 024513 147 -KPI----------KGDWN-------GAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGN 198 (266)
Q Consensus 147 -KP~----------~~d~~-------GsG~H~h~Sl~~~~~~~g~~~~~~~iaGl~L~h~~al~a~~~ns 198 (266)
||. .+ .. -+|+|+|+++-+. ..+...+..+ +...|.++|+++||
T Consensus 152 ~~~RY~~m~~~~~~~g-~~g~~mm~~~~g~qVhl~~~~~------~~~~~~~~~~-~~~~P~llALsAnS 213 (449)
T 2gwd_A 152 PKGRYDIMRNYMPKVG-SLGLDMMLRTCTVQVNLDFSSE------ADMIRKFRAG-LALQPIATALFANS 213 (449)
T ss_dssp SCHHHHHHHHHGGGTC-SSHHHHHHHBCEEEEEECCSSH------HHHHHHHHHH-HHHHHHHHHHHCCB
T ss_pred CchHHHHHHHHHHHhc-hhHHHHhhcceeeEEEecCCCH------HHHHHHHHHH-HHHHHHHHHHHhCC
Confidence 321 11 22 4789999999652 1233345555 77888888988754
No 13
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=93.04 E-value=0.8 Score=45.92 Aligned_cols=99 Identities=12% Similarity=-0.112 Sum_probs=57.1
Q ss_pred eeeCCCCCCceeEecCCC-chhHHHHHHHHHHHHHHHHH-HHcCceEEEccc-------CCCC-----------------
Q 024513 98 GINGEVMPGQWEFQVGPC-VGISSGDQLWMARYILERIT-EIAGVVLSFDPK-------PIKG----------------- 151 (266)
Q Consensus 98 ~~~~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA-~~hGl~atFmpK-------P~~~----------------- 151 (266)
.+.+|+.-.|.|+...++ +.-++-+.+...+..+.+.+ ....+-+.=||= |+..
T Consensus 54 ~i~~d~~es~lE~~Tpv~~~~~~~~~~L~~l~~~~~~~~~~~e~lw~~smp~~l~~~~i~ia~~~~~~~~~Yr~~l~~ry 133 (750)
T 3ln6_A 54 YIQTDYSEPQLELITPIAKDSQEAIRFLKAISDVAGRSINHDEYLWPLSMPPKVREEDIQIAQLEDAFEYDYRKYLEKTY 133 (750)
T ss_dssp SEEESSBSSEEEEECCCBSSHHHHHHHHHHHHHHHHHHSCTTEEECCSSSCSSCCTTTCCBCCCSCHHHHHHHHHHHHHH
T ss_pred CccchhhhhheeeeCcCCCCHHHHHHHHHHHHHHHHHHhcCCCceeeecCCCCCCCCCCCcccCCCCCcHHHHHHHHHHh
Confidence 456788888888888884 45556677766776666664 222222221221 2220
Q ss_pred ---CCCCceeeEeEeccccC--------CCCchHHH-----HHHHHHHHHHHHHHHhhhhcc
Q 024513 152 ---DWNGAGAHANYSTKSMR--------NDGGIDVI-----KKAIEKLGKRHGEHIAAYGEG 197 (266)
Q Consensus 152 ---d~~GsG~H~h~Sl~~~~--------~~~g~~~~-----~~~iaGl~L~h~~al~a~~~n 197 (266)
.+.=+|+|+|+|+-+.. +......+ -..+-++ +.+.+.|++++.+
T Consensus 134 g~~~q~i~G~Hvn~~~~~~~~~~l~~~~~~~~~~~~~~~~y~~l~r~~-~r~~w~l~~L~ga 194 (750)
T 3ln6_A 134 GKLIQSISGIHYNLGLGQELLTSLFELSQADNAIDFQNQLYMKLSQNF-LRYRWLLTYLYGA 194 (750)
T ss_dssp CTGGGGCCCEEEEEEECHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH-HHHHHHHHHHTCC
T ss_pred ChhhceeeeEEEEecCChHHHHHHhhccccchHHHHhhhHHHHHHHHH-HhHHHHHHHHhhC
Confidence 01125999999997531 00011111 1346677 8899999999864
No 14
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=90.99 E-value=2.3 Score=38.03 Aligned_cols=126 Identities=17% Similarity=0.205 Sum_probs=81.9
Q ss_pred HHHcC-ceeeeeeCCCC----CCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEcccCCCCCCCCceeeEeEe
Q 024513 89 CLYAG-INISGINGEVM----PGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYS 163 (266)
Q Consensus 89 l~~~G-i~ve~~~~E~g----pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpKP~~~d~~GsG~H~h~S 163 (266)
+.++| |++..+..-.+ |.+.=|.|.|.+++.-.|-+-.+ ..+|++-.+.||. +| || . ..|.|+|+-+-
T Consensus 111 ~aq~~~lE~H~w~~~~~~~~~PD~lvfDLDP~~~~~f~~v~~aA-~~~r~~L~~lGL~-~f-~K--T--SGgkGlHV~vP 183 (309)
T 2fao_A 111 AVQMGSIEFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEAT-QLSLTLLDELGLR-AF-LK--T--SGGKGMHLLVP 183 (309)
T ss_dssp HHHTTEEEEEECSSCTTCTTSCSEEEEEEEECTTSCHHHHHHHH-HHHHHHHHHHTCC-CE-EE--E--CSSSSEEEEEE
T ss_pred HHHhCcEEeeCCcccCCCCCCCCEEEEECCCCcCCCHHHHHHHH-HHHHHHHHHcCCc-ee-eE--c--cCCCeeEEEEE
Confidence 45676 77766655443 88999999999887766655445 4489999999996 44 66 3 24699999999
Q ss_pred ccccCCCCchHHHHHHHHHHHHHHHHHHhh--hhccccccCCCCCCCCCccceeeccCCCCceEEeCcC
Q 024513 164 TKSMRNDGGIDVIKKAIEKLGKRHGEHIAA--YGEGNERRLTGRHETADINTFSWGVANRGASIRVGRD 230 (266)
Q Consensus 164 l~~~~~~~g~~~~~~~iaGl~L~h~~al~a--~~~nsYkRl~~~~~a~~p~~~~WG~~NR~a~iRvp~~ 230 (266)
|... .+....+.|.-.+ -+++..... ++...-|....|- .++.|-.|+|...+-.|-+
T Consensus 184 l~~~---~~~~~vr~fa~~~-A~~l~~~~Pd~~t~~~~k~~R~gk-----IfiDy~qN~~g~T~vapYS 243 (309)
T 2fao_A 184 LERR---HGWDEVKDFAQAI-SQHLARLMPERFSAVSGPRNRVGK-----IFVDYLRNSRGASTVAAYS 243 (309)
T ss_dssp CCSC---SCHHHHHHHHHHH-HHHHHHHCTTTEECSCSGGGSTTS-----EEEECGGGSTTCCEECTTC
T ss_pred cCCC---CCHHHHHHHHHHH-HHHHHHhCcceeehhhhHhhCCCC-----EEEeCccCCCCCeEEccCC
Confidence 9642 2334455565555 333333222 2234444444432 6899999998888777743
No 15
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=87.72 E-value=3.7 Score=41.17 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=54.7
Q ss_pred eeeCCCCCCceeEecCCC-chhHHHHHHHHHHHHHHHHH-HHcCceEEEc----cc----CCCCCC--------------
Q 024513 98 GINGEVMPGQWEFQVGPC-VGISSGDQLWMARYILERIT-EIAGVVLSFD----PK----PIKGDW-------------- 153 (266)
Q Consensus 98 ~~~~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA-~~hGl~atFm----pK----P~~~d~-------------- 153 (266)
.+.+|+.-.|.|+...+. +.-++-+.+...+..+.+.+ ....+-+.=| |. |+. ++
T Consensus 53 ~i~td~ses~lE~iTpv~~~~~~~~~~L~~l~~~~~~~~~~~e~lwp~smp~~l~~~~~ip~a-~~~~~~~~~Yr~~L~~ 131 (757)
T 3ln7_A 53 YIQTDFAESQLELITPPTKKLEDTFRWLSVIHEVVQRSLPEEEYIFPLSMPAGLPAEEQIRVA-QLDNPEDVAYREYLVK 131 (757)
T ss_dssp SEECSSSTTEEEEEEEEESSHHHHHHHHHHHHHHHHHHSCTTEECCCSSSCSBCCC---CCCC-CCSSHHHHHHHHHHHH
T ss_pred CCCchhhhhheeeeCcCCCCHHHHHHHHHHHHHHHHHHhcCCCceeeccCCCcCCCCCCCCcc-ccCCCccHHHHHHHHH
Confidence 456777788888887774 45556666666666666554 2222211112 11 333 11
Q ss_pred -------CCceeeEeEeccccC--------CC-CchHHHH-----HHHHHHHHHHHHHHhhhhc
Q 024513 154 -------NGAGAHANYSTKSMR--------ND-GGIDVIK-----KAIEKLGKRHGEHIAAYGE 196 (266)
Q Consensus 154 -------~GsG~H~h~Sl~~~~--------~~-~g~~~~~-----~~iaGl~L~h~~al~a~~~ 196 (266)
.=+|+|+|+|+-+.- ++ .....++ ..+-++ +++.+-|++++.
T Consensus 132 ryG~~~q~i~GiH~n~s~~~~~~~~l~~~~~~~~~~~~~~~~~Y~~l~r~~-~r~~wll~yL~g 194 (757)
T 3ln7_A 132 IYGKNKQMVSGIHYNFQLSPDLITRLFRLQNEYQSAVDFQNDLYLKMAKNF-LRYQWILLYLLA 194 (757)
T ss_dssp HHCSHHHHCCCCEEEEEECHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHH-HHHHHHHHHHTC
T ss_pred HhchhhceeeeEEEEEecChHHHHHHhhhcccchhHHHHHhHHHHHHHHhh-HhHHHHHHHHhh
Confidence 124999999997520 01 1111111 245666 888899999876
No 16
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=83.32 E-value=2.1 Score=33.39 Aligned_cols=90 Identities=11% Similarity=0.024 Sum_probs=59.7
Q ss_pred HHHHccccccCCcceEeeeeeEEEecCCCCCCCCCCCCCCCCCCCCCccccccchhhHHHHHHHHHHHHHHcCceeeeee
Q 024513 21 AKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGIN 100 (266)
Q Consensus 21 ~~~~~~~~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~ 100 (266)
+++++.|.+.|-.+..-.++||++.=.+. +-++.+...+.+.|..|+..-
T Consensus 22 ~~Vl~~L~e~Gddl~~~r~IEH~~~F~de------------------------------~~~e~~a~~~~~~Gy~v~~~~ 71 (132)
T 1nxi_A 22 RDIIQALLEDGSDPDALYEIEHHLFAEDF------------------------------DKLEKAAVEAFKMGFEVLEAE 71 (132)
T ss_dssp HHHHHHHHHHTCCTTSCEEEEEEEEESCH------------------------------HHHHHHHHHHHHHTCCCBCCC
T ss_pred HHHHHHHHhCCCCcCCCeEEEEEEEeCCH------------------------------HHHHHHHHHHHHCCCEEEecc
Confidence 46777788889999999999999975422 223333344568999886432
Q ss_pred C---CCCCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCce
Q 024513 101 G---EVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVV 141 (266)
Q Consensus 101 ~---E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~ 141 (266)
. |-|-..|++.+.....+...+=.-....+.+ +|+++|-.
T Consensus 72 ~~e~e~g~~~~~~~i~~~~~l~~~~I~~~~~~L~~-lA~~~~G~ 114 (132)
T 1nxi_A 72 ETEDEDGNKLLCFDATMQSALDAKLIDEQVEKLVN-LAEKFDII 114 (132)
T ss_dssp CBCCSSCSSBEEEEEEEEECSCHHHHHHHHHHHHH-HHHHHTCE
T ss_pred cccCCCCceeEEEEEEEeccCCHHHHHHHHHHHHH-HHHHhCcE
Confidence 2 3333469999988877776554444445444 77777653
No 17
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=80.90 E-value=5.3 Score=35.59 Aligned_cols=126 Identities=10% Similarity=0.091 Sum_probs=79.2
Q ss_pred HHHcC-ceeeeeeCCC-C-----------CCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEcccCCCCCCCC
Q 024513 89 CLYAG-INISGINGEV-M-----------PGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNG 155 (266)
Q Consensus 89 l~~~G-i~ve~~~~E~-g-----------pGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpKP~~~d~~G 155 (266)
+.++| |++..+..-. + |.+.=|.|.|.+++.-.|-+-.+ ..+|++-.+.||. +| || . ..|
T Consensus 105 ~aq~g~lE~H~w~~r~~~~~~~~~~~~~~PD~lvfDLDP~~~~~f~~v~~aA-~~~r~~L~~lGL~-~f-~K--T--SGg 177 (303)
T 2iru_A 105 IAQQAALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQLAEVA-RAVRDLLADIGLV-TF-PV--T--SGS 177 (303)
T ss_dssp HHHTTCCEEEECSEEEEECTTTCCEEEEEEEEEEEEEEECTTCCHHHHHHHH-HHHHHHHHTTTCC-CE-EE--E--CSS
T ss_pred HHHhCcEeeeCCccccccccccccCCCCCCCEEEEECCCCCCCCHHHHHHHH-HHHHHHHHHcCCc-cc-eE--c--cCC
Confidence 45666 6666554333 2 67888999998877665544444 5589999999998 44 67 3 247
Q ss_pred ceeeEeEeccccCCCCchHHHHHHHHHHHHHHHHHHhh--hhccccccCCCCCCCCCccceeeccCCCCceEEeCcC
Q 024513 156 AGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAA--YGEGNERRLTGRHETADINTFSWGVANRGASIRVGRD 230 (266)
Q Consensus 156 sG~H~h~Sl~~~~~~~g~~~~~~~iaGl~L~h~~al~a--~~~nsYkRl~~~~~a~~p~~~~WG~~NR~a~iRvp~~ 230 (266)
.|+|+-+-|... .+....+.|.-.| -+++..... ++....|....|- .++.|-.|+|...+=-|-+
T Consensus 178 kGlHV~vPl~~~---~~~~~vr~fa~~~-A~~l~~~~Pd~~t~~~~k~~R~gk-----IfvDy~qN~~g~T~vapYS 245 (303)
T 2iru_A 178 KGLHLYTPLDEP---VSSRGATVLAKRV-AQRLEQAMPALVTSTMTKSLRAGK-----VFVDWSQNSGSKTTIAPYS 245 (303)
T ss_dssp SCEEEEEEEEEE---ECHHHHHHHHHHH-HHHHHHHCTTTEESSCCGGGCTTS-----EEEECGGGSTTCCEECTTC
T ss_pred CeEEEEEEcCCC---CCHHHHHHHHHHH-HHHHHHHCcceehhhhhHHhCCCC-----EEEECccCCCCCeeEecCc
Confidence 899999998642 2233445555555 333333221 2234445554442 7899999999887776643
No 18
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=80.48 E-value=1.8 Score=30.48 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCceeeeeeCCCCCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEccc
Q 024513 80 DIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPK 147 (266)
Q Consensus 80 ~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpK 147 (266)
-++.+|.+.+.+.|++|..++.....|.|.+.+.-.-. -.+++-.++..+++++.++|+..++.+.
T Consensus 17 Gila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~~~~l~~l~~~L~~~~~~~~~~~~~~~~ 82 (91)
T 1zpv_A 17 GIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--EKQDFTYLRNEFEAFGQTLNVKINIQSA 82 (91)
T ss_dssp THHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SCCCHHHHHHHHHHHHHHHTEEEEEEEG
T ss_pred CHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--CCCCHHHHHHHHHHHHHHcCCEEEEeeH
Confidence 36666777788999999988876655777666554211 1123445677889999999999988654
No 19
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*
Probab=74.17 E-value=14 Score=35.37 Aligned_cols=38 Identities=11% Similarity=-0.192 Sum_probs=26.2
Q ss_pred eeeCCCCCCceeEecCCC-chhHHHHHHHHHHHHHHHHH
Q 024513 98 GINGEVMPGQWEFQVGPC-VGISSGDQLWMARYILERIT 135 (266)
Q Consensus 98 ~~~~E~gpGQ~Ei~l~~~-~~l~aaD~~~~~r~~ik~vA 135 (266)
.+.+|+.-.|.|+...+. +.-++-+.+-..+..+.+.+
T Consensus 56 ~IttDfsEsqlE~iTpv~~s~~eal~~L~~l~~~v~~~l 94 (518)
T 1va6_A 56 WITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNM 94 (518)
T ss_dssp SEEECSBTTEEEEECCCBSCHHHHHHHHHHHHHHHHTSS
T ss_pred CcCCCcchhheeecCCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 356788888888888884 55556666666666666655
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=62.05 E-value=8.9 Score=31.01 Aligned_cols=67 Identities=10% Similarity=0.098 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCceeeeeeCCC--------CCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEccc
Q 024513 79 RDIVNSHYKACLYAGINISGINGEV--------MPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPK 147 (266)
Q Consensus 79 ~~~~~~l~~~l~~~Gi~ve~~~~E~--------gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpK 147 (266)
..++.+|.+.|.+.|++|+.+..-. +.+.|-+.+.-.-+ ... +.-.+|..+.++|.+.|+...|.+-
T Consensus 104 ~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~-~~~-~~~~l~~~l~~~~~~~~~~~~~~~~ 178 (192)
T 1u8s_A 104 LGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SGC-NLMQLQEEFDALCTALDVQGSLNFI 178 (192)
T ss_dssp TTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TTS-CHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred ccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC-CCC-CHHHHHHHHHHHHHHhCceEEEEEc
Confidence 3577888888999999998766542 45667555543221 111 2345788888999999999999873
No 21
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A
Probab=54.85 E-value=21 Score=27.10 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHcCceeeeeeC-------CC----CCCceeEecCCCchh--------HHHHHHHHHHHHHHHHHHHc
Q 024513 78 GRDIVNSHYKACLYAGINISGING-------EV----MPGQWEFQVGPCVGI--------SSGDQLWMARYILERITEIA 138 (266)
Q Consensus 78 ~~~~~~~l~~~l~~~Gi~ve~~~~-------E~----gpGQ~Ei~l~~~~~l--------~aaD~~~~~r~~ik~vA~~h 138 (266)
-.+++.+|.+.|.++||..+.-.. +. +.-|||+.+--.+.+ +..=+.+.||.++..|..+.
T Consensus 39 P~eIm~eI~rvL~~~gi~~~~~g~y~l~C~~~~~~~~~~v~fElEVckl~~~~l~gV~~kRi~Gd~~~yk~lc~~il~~L 118 (120)
T 3ose_A 39 PNDMMREIRKVLDANNCDYEQKERFLLFCVHGDARQDSLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANEL 118 (120)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCTTTTCCEEEEEEEEEEGGGTEEEEEEEEEESCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCCEEEEEEecCCCCCccEEEEEEEEEecCCCceeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 379999999999999998887431 11 234788876543211 12225678899999988875
Q ss_pred Cc
Q 024513 139 GV 140 (266)
Q Consensus 139 Gl 140 (266)
.|
T Consensus 119 ~L 120 (120)
T 3ose_A 119 KL 120 (120)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 22
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}
Probab=54.84 E-value=32 Score=32.89 Aligned_cols=19 Identities=21% Similarity=0.053 Sum_probs=15.8
Q ss_pred CCcceEeeeeeEEEecCCC
Q 024513 31 AEEPWYGIEQEYTLLQKDI 49 (266)
Q Consensus 31 G~~~~~g~E~EF~l~~~~~ 49 (266)
-..+.+|+|-|+..++.+.
T Consensus 30 ~~~~~~GIE~E~lRVd~~G 48 (525)
T 3nzt_A 30 KINNLRGIERETLRVTDCG 48 (525)
T ss_dssp SCCCEEEEEEEEEEEETTS
T ss_pred CCCCCcceEeeeeEECCCC
Confidence 4578999999999998743
No 23
>1v5s_A MAP/microtubule affinity-regulating kinase 3; Ka1 domain, ELKL motif, MARK3, phosphorylation, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.129.6.1
Probab=54.06 E-value=44 Score=25.65 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCceeee--------eeCCC---CCCceeEecCCCchhH--------HHHHHHHHHHHHHHHHHHcC
Q 024513 79 RDIVNSHYKACLYAGINISG--------INGEV---MPGQWEFQVGPCVGIS--------SGDQLWMARYILERITEIAG 139 (266)
Q Consensus 79 ~~~~~~l~~~l~~~Gi~ve~--------~~~E~---gpGQ~Ei~l~~~~~l~--------aaD~~~~~r~~ik~vA~~hG 139 (266)
.+++.+|++.|.+.||+.++ .|... ..=||||.+---+.+. ..-+.+.||.++.+|..+..
T Consensus 40 ~eIm~EI~rvL~~~~i~~k~~~~y~L~C~~~~~~~~~~vkfEiEVcKvp~l~l~GI~fKRisGd~w~YK~lc~~IL~eLk 119 (126)
T 1v5s_A 40 GDMMREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELK 119 (126)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEETTEEEEEECSSSTTTCEEEEEECCCCTTTCSCCCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCcEEEECCEEEEEEECCCCCCceEEEEEEEEEecCCCceeEEEeeccCchhHHHHHHHHHHHHHh
Confidence 78999999999999998886 12111 1238999876432111 22255899999999999877
Q ss_pred c
Q 024513 140 V 140 (266)
Q Consensus 140 l 140 (266)
+
T Consensus 120 L 120 (126)
T 1v5s_A 120 L 120 (126)
T ss_dssp C
T ss_pred c
Confidence 5
No 24
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=51.11 E-value=80 Score=24.13 Aligned_cols=78 Identities=5% Similarity=-0.033 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHHHHHcCceeeeeeCCCCCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEcccCCCCCCC
Q 024513 75 KALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWN 154 (266)
Q Consensus 75 ~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpKP~~~d~~ 154 (266)
+..+.++..+-.+-..+.+|+|..-.--+|.|...|.|.-+|. ++-..+ .|++||+ |++.--++|+- ..
T Consensus 52 eqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddl-ea~eka--lkemirq-arkfagtvtyt-------l~ 120 (170)
T 4hhu_A 52 EQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDL-EALEKA--LKEMIRQ-ARKFAGTVTYT-------LS 120 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCH-HHHHHH--HHHHHHH-HHHTTCEEEEE-------EC
T ss_pred HHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcH-HHHHHH--HHHHHHH-HHhhcceEEEE-------Ee
Confidence 3456777777777778999999999999999999999997653 333332 4788876 56666666753 24
Q ss_pred CceeeEeEe
Q 024513 155 GAGAHANYS 163 (266)
Q Consensus 155 GsG~H~h~S 163 (266)
||-+-+-+.
T Consensus 121 gn~l~i~it 129 (170)
T 4hhu_A 121 GNRLVIVIT 129 (170)
T ss_dssp SSEEEEEEE
T ss_pred CCEEEEEEe
Confidence 666555543
No 25
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=49.19 E-value=19 Score=29.23 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCceeeeeeCC------CCCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEcccC
Q 024513 79 RDIVNSHYKACLYAGINISGINGE------VMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKP 148 (266)
Q Consensus 79 ~~~~~~l~~~l~~~Gi~ve~~~~E------~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpKP 148 (266)
..++.+|.+.|.+.|++|..++.- .+.+.|-+.+.-.-+ ...| -.+|..+.++|.+.|+...|.|-.
T Consensus 104 pGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~-~~~~--~~l~~~l~~~a~~l~~di~~~~~~ 176 (195)
T 2nyi_A 104 EGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP-FPLY--QEVVTALSRVEEEFGVDIDLEEVV 176 (195)
T ss_dssp TTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE-GGGH--HHHHHHHHHHHHHHTCEEEEEECC
T ss_pred cCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC-CCcc--HHHHHHHHHHHHHcCeEEEEEECc
Confidence 468888889999999999877654 244777655554322 1223 567888899999999999998753
No 26
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=44.63 E-value=47 Score=29.51 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCceeeeeeCCCCCC--ceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEcccCCC
Q 024513 82 VNSHYKACLYAGINISGINGEVMPG--QWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIK 150 (266)
Q Consensus 82 ~~~l~~~l~~~Gi~ve~~~~E~gpG--Q~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpKP~~ 150 (266)
+..+.+..++.||.+--+.++.-|- ..|+.+... |.+.-.=.-|.++|+++|+..||.|-+|.
T Consensus 62 l~~il~~n~~~~I~~yRiSS~l~P~~thp~~~~~~~------~~~~~~l~~iG~~a~~~~iRLS~HPgqF~ 126 (310)
T 3tc3_A 62 LKNILEWNLKHEILFFRISSNTIPLASHPKFHVNWK------DKLSHILGDIGDFIKENSIRISMHPGQYV 126 (310)
T ss_dssp HHHHHHHHHHTTCCEEECCTTSSTTTTSTTCCCCHH------HHTHHHHHHHHHHHHHTTCEEEECCCTTC
T ss_pred HHHHHHHHHHcCCEEEEeCcccCCCccccccccchH------HHHHHHHHHHHHHHHHcCcEEEecCCCCc
Confidence 4456678899999999999988763 223322221 22222224567889999999999999987
No 27
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=41.02 E-value=99 Score=26.08 Aligned_cols=65 Identities=18% Similarity=0.015 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHcCceeeeeeCCCCCCce---eEecCCCchhH-----HHHHHHHHHHHHHHHHHHcCceEE
Q 024513 78 GRDIVNSHYKACLYAGINISGINGEVMPGQW---EFQVGPCVGIS-----SGDQLWMARYILERITEIAGVVLS 143 (266)
Q Consensus 78 ~~~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~---Ei~l~~~~~l~-----aaD~~~~~r~~ik~vA~~hGl~at 143 (266)
..+++.+|-..|...+++|....+|. .|+. =+|+..++..+ +++.+.+||.+|.+|+...+..++
T Consensus 45 l~~~I~~IN~~L~~l~~~Ir~~~~q~-~g~~~y~lVN~~~d~~~klaT~yt~~Ei~~fk~lle~i~~s~~~~~s 117 (238)
T 3nw0_A 45 LEDFINNINSVLESLYIEIKRGVTED-DGRPIYALVNLATTSISKMATDFAENELDLFRKALELIIDSETGFAS 117 (238)
T ss_dssp HHHHHHHHHHHHGGGTEEEEEEECTT-TCCEEEEEEESSSCTTHHHHTTSCHHHHHHHHHHHHHHHHSSSSCEE
T ss_pred HHHHHHHHHHHhhhcCcEEEEeecCC-CCCEEEEEEeCCCCHHHhhccCCCHHHHHHHHHHHHHHHhCCCCcee
Confidence 57999999999999999999999986 4443 24555555555 568899999999999986544333
No 28
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=40.46 E-value=1.4e+02 Score=23.69 Aligned_cols=65 Identities=11% Similarity=0.050 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCceeeeeeCCCCCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEccc
Q 024513 80 DIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPK 147 (266)
Q Consensus 80 ~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpK 147 (266)
.++..|...|.+.|++|.....-.-.|+|=+.+.-..+. +..-.++..+.+++.+.|+...+-+.
T Consensus 18 Giva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~~~~~~~~~~~~~~~ 82 (192)
T 1u8s_A 18 GICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP---SNITRVETTLPLLGQQHDLITMMKRT 82 (192)
T ss_dssp THHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH---HHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred cHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC---CCHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 477778888899999998766544567776554443322 34556788888899999998887644
No 29
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=31.21 E-value=24 Score=22.88 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=18.4
Q ss_pred CCCCCCChHHHHHHHHccccccCCc
Q 024513 9 GEPIPTNKRFNAAKVFGHPDVVAEE 33 (266)
Q Consensus 9 g~p~~~~pR~~L~~~~~~~~~~G~~ 33 (266)
|.|...||| +..++.++..+||+
T Consensus 1 ~~p~~~D~r--l~~al~qMl~MGF~ 23 (52)
T 1q02_A 1 GSPPEADPR--LIESLSQMLSMGFS 23 (52)
T ss_dssp CCCTTSCHH--HHHHHHHHHTTTCC
T ss_pred CCCCCcChH--HHHHHHHHHHcCCC
Confidence 568888999 66778888888885
No 30
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=27.07 E-value=96 Score=22.26 Aligned_cols=64 Identities=8% Similarity=-0.042 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHcCceeeeeeCCC-CCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEE
Q 024513 78 GRDIVNSHYKACLYAGINISGINGEV-MPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSF 144 (266)
Q Consensus 78 ~~~~~~~l~~~l~~~Gi~ve~~~~E~-gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atF 144 (266)
...+..-|.+.|+..++++..++.+. ++++.||.-.-...- .+--..-.++-++...-|+..-|
T Consensus 20 e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~at~---~~~~~Le~iv~rLs~ep~V~~a~ 84 (94)
T 2lqj_A 20 ETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVG---HTPAKLERLVAELSLQPGVYAVH 84 (94)
T ss_dssp HHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEEES---CCHHHHHHHHHHHHHSTTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEecC---CCHHHHHHHHHHHhCCCCeEEEE
Confidence 35666777788899999999999775 577787765432111 11124467788888888866544
No 31
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=22.57 E-value=1.8e+02 Score=26.62 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCceeeeeeCCCC------CCceeEec
Q 024513 79 RDIVNSHYKACLYAGINISGINGEVM------PGQWEFQV 112 (266)
Q Consensus 79 ~~~~~~l~~~l~~~Gi~ve~~~~E~g------pGQ~Ei~l 112 (266)
..+.+.|.+.|++.||+|+--.-|.. .|+|++.+
T Consensus 344 ~~~a~~i~~~l~~iGI~v~i~~~~~~~~~~~~~~~~d~~~ 383 (496)
T 3t66_A 344 PLIAQVFQSNAKQIGIEVEIRQIEVPEEYMASNRDWDLIT 383 (496)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTCTTCCEEE
T ss_pred HHHHHHHHHHHHhcCCEEEEEEeccHHHHHhhCCCccEEE
Confidence 46677778889999999987766654 56676654
No 32
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A
Probab=20.37 E-value=1.1e+02 Score=29.62 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCceeeee-----eCCCCCCceeEecCCCchhHHHHHHHHHHHHHHHHHHHcCceEEEcccCCC
Q 024513 81 IVNSHYKACLYAGINISGI-----NGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIK 150 (266)
Q Consensus 81 ~~~~l~~~l~~~Gi~ve~~-----~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~r~~ik~vA~~hGl~atFmpKP~~ 150 (266)
..++..+.|+++|+++-.+ .||-.+|||.++.. .--| ..+ +.|+++|+.+-.-|=|+.
T Consensus 33 ~W~d~l~kmKa~G~NtV~~yv~W~~hEP~~G~fdF~g~-----~dL~------~fl-~~a~~~Gl~VilrpGPYi 95 (595)
T 4e8d_A 33 DWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGD-----LDLE------KFL-QIAQDLGLYAIVRPSPFI 95 (595)
T ss_dssp GHHHHHHHHHHTTCCEEEEECCHHHHCSBTTBCCCSGG-----GCHH------HHH-HHHHHTTCEEEEECCSCC
T ss_pred HHHHHHHHHHHcCCCEEEEeccHHHcCCCCCeecccch-----hhHH------HHH-HHHHHcCCEEEEecCCce
Confidence 3344446678999999999 89999999976432 1112 122 358899999999999975
Done!