RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 024513
(266 letters)
>gnl|CDD|177922 PLN02284, PLN02284, glutamine synthetase.
Length = 354
Score = 595 bits (1535), Expect = 0.0
Identities = 242/264 (91%), Positives = 251/264 (95%)
Query: 1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGY 60
MCDAYTPAGEPIPTNKR AAK+F HPDV AEEPWYGIEQEYTLLQKD+ WPLGWPVGGY
Sbjct: 91 MCDAYTPAGEPIPTNKRAKAAKIFSHPDVAAEEPWYGIEQEYTLLQKDVKWPLGWPVGGY 150
Query: 61 PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISS 120
PGPQGPYYCGVGADKA GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+
Sbjct: 151 PGPQGPYYCGVGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISA 210
Query: 121 GDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAI 180
GDQLW+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR DGG +VIKKAI
Sbjct: 211 GDQLWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVIKKAI 270
Query: 181 EKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 240
EKLG RH EHIAAYGEGNERRLTG+HETADINTFSWGVANRGASIRVGRDTEKEGKGYFE
Sbjct: 271 EKLGLRHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 330
Query: 241 DRRPASNMDPYVVTSMIAETTILW 264
DRRPASNMDPYVVTSMIAETTILW
Sbjct: 331 DRRPASNMDPYVVTSMIAETTILW 354
>gnl|CDD|178603 PLN03036, PLN03036, glutamine synthetase; Provisional.
Length = 432
Score = 494 bits (1272), Expect = e-177
Identities = 207/266 (77%), Positives = 234/266 (87%)
Query: 1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGY 60
+CD YTPAGEPIPTNKR AA++F + VV E PW+GIEQEYTLLQ+++ WPLGWPVG Y
Sbjct: 151 ICDTYTPAGEPIPTNKRHRAAEIFSNKKVVDEVPWFGIEQEYTLLQQNVKWPLGWPVGAY 210
Query: 61 PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISS 120
PGPQGPYYCG GADK+ GRDI ++HYKACLYAGINISG NGEVMPGQWE+QVGP VGI +
Sbjct: 211 PGPQGPYYCGAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDA 270
Query: 121 GDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAI 180
GD +W +RYILERITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR +GG +VIKKAI
Sbjct: 271 GDHIWCSRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAI 330
Query: 181 EKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 240
L RH EHI+AYGEGNERRLTG+HETA I+TFSWGVANRG SIRVGRDTEK+GKGY E
Sbjct: 331 LNLSLRHKEHISAYGEGNERRLTGKHETASIDTFSWGVANRGCSIRVGRDTEKKGKGYLE 390
Query: 241 DRRPASNMDPYVVTSMIAETTILWKP 266
DRRPASNMDPY+VTS++AETTILW+P
Sbjct: 391 DRRPASNMDPYIVTSLLAETTILWEP 416
>gnl|CDD|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain.
Length = 259
Score = 250 bits (642), Expect = 1e-83
Identities = 85/264 (32%), Positives = 123/264 (46%), Gaps = 22/264 (8%)
Query: 13 PTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWP-VGGYPGPQGPYYCGV 71
P + R + + P++G EQE+ L D P G P GGYP P+GPYY G
Sbjct: 1 PRDPRSILKRALARLASLGYTPYFGPEQEFFLF--DDVRPGGGPPPGGYPDPRGPYYGGY 58
Query: 72 GADKAL--GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARY 129
L RDI KA AGI + GI+ EV PGQ E + + + D L + +Y
Sbjct: 59 FPVAPLDEARDIRRDIVKALEAAGIPVEGIHHEVAPGQHEIDLRFADALEAADNLQLFKY 118
Query: 130 ILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRN--------DGGIDVIKKAIE 181
+++R+ E G+ +F PKPI GD NG+G H + S ++ DG + + A
Sbjct: 119 VVKRVAEKHGLTATFMPKPIFGD-NGSGMHTHQSLWDRKDGKNLFADGDGYAGLSETARH 177
Query: 182 KLG--KRHGEHIAAY---GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGK 236
+G +H I AY + +RL T +WGV NR ASIR+ R +
Sbjct: 178 FIGGILKHAPAITAYTAPTVNSYKRLVP--GTEAPVYIAWGVRNRSASIRIPRGGGPKA- 234
Query: 237 GYFEDRRPASNMDPYVVTSMIAET 260
G EDR P + +PY+ + +
Sbjct: 235 GRVEDRLPDPDANPYLALAALLAA 258
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and
metabolism].
Length = 443
Score = 179 bits (456), Expect = 1e-53
Identities = 68/274 (24%), Positives = 105/274 (38%), Gaps = 23/274 (8%)
Query: 1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEE----PWYGIEQEYTLLQKDINWPLGWP 56
+CD Y P G P P + R + + +E G E E+ L +D
Sbjct: 92 LCDVYDPDGTPYPRDPRSVLKRAL---ARLKDEGLAPAVVGPELEFFLFDRD-GRDPDG- 146
Query: 57 VGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCV 116
G P +G Y+ D+A D +A AGI I I+ EV PGQ+E +
Sbjct: 147 --GRPADKGGYFDVAPLDEA--EDFRRDIVEALEAAGIEIEAIHHEVAPGQFEINLRFDD 202
Query: 117 GISSGDQLWMARYILERITEIAGVVLSFDPKPIKGD-WNGAGAHANYSTKSMRN------ 169
+ + DQ+ + +Y+++ + E G+ +F PKP GD +G H + K N
Sbjct: 203 ALKAADQIVIFKYVVKEVAEKHGLTATFMPKPFFGDNGSGMHVHQSLWDKDGGNLFADED 262
Query: 170 --DGGIDVIKKAIEKLGKRHGEHIAAYGEG-NERRLTGRHETADINTFSWGVANRGASIR 226
G + I + K A N + G +WGV NR AS+R
Sbjct: 263 GYAGLSETALHFIGGILKHAPALTAITAPTVNSYKRLGVPYEWAPTYIAWGVRNRSASVR 322
Query: 227 VGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 260
+ E R P + +PY+ + I
Sbjct: 323 IPASGANGKARRVEFRVPDPDANPYLAFAAILAA 356
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I. Alternate name:
glutamate--ammonia ligase. This model represents the
dodecameric form, which can be subdivided into 1-alpha
and 1-beta forms. The phylogeny of the 1-alpha and
1-beta forms appears polyphyletic. E. coli,
Synechocystis PCC6803, Aquifex aeolicus, and the
crenarcheon Sulfolobus acidocaldarius have form 1-beta,
while Bacillus subtilis, Thermotoga maritima, and
various euryarchaea has form 1-alpha. The 1-beta
dodecamer from the crenarcheon Sulfolobus acidocaldarius
differs from that in E. coli in that it is not regulated
by adenylylation [Amino acid biosynthesis, Glutamate
family].
Length = 459
Score = 54.7 bits (132), Expect = 1e-08
Identities = 63/280 (22%), Positives = 108/280 (38%), Gaps = 36/280 (12%)
Query: 2 CDAYTPA-GEPIPTNKRFNAAKVFGH-PDVVAEEPWYGIEQEYTLLQKDINWPLGW---- 55
CD Y P GEP + R A + + + + ++G E E+ L L
Sbjct: 87 CDVYEPFTGEPYERDPRSIAKRAEEYLKSGIGDTAYFGPEPEFFLFDSVEFGSLANGSFY 146
Query: 56 -------------PVGGY-PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGING 101
GY P +G Y+ D A+ DI G ++ +
Sbjct: 147 EVDSEEGRWNEESGNRGYKPRDKGGYFPVAPTDTAV--DIRREMVLYLEQLGFDVEVHHH 204
Query: 102 EVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHAN 161
EV GQ E + + D + +Y+++ + G +F PKP+ GD NG+G H +
Sbjct: 205 EVATGQHEIDFKFDTLLKTADDIQTYKYVVKNVARKHGKTATFMPKPLFGD-NGSGMHCH 263
Query: 162 YS-----TKSMRNDGGIDVIKKAIEKLGK--RHGEHIAAYGE---GNERRLTGRHETADI 211
S + + + A+ +G +H + +AA+ + +RL +E A +
Sbjct: 264 QSLWKDGENLFAGEEYAGLSETALYYIGGILKHAKALAAFTNPTVNSYKRLVPGYE-APV 322
Query: 212 NTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY 251
++ NR A IR+ + K E R P + +PY
Sbjct: 323 Y-LAYSARNRSALIRIPASGNPKAK-RIEFRFPDPSANPY 360
>gnl|CDD|234109 TIGR03105, gln_synth_III, glutamine synthetase, type III. This
family consists of the type III isozyme of glutamine
synthetase, originally described in Rhizobium meliloti,
where types I and II also occur.
Length = 435
Score = 42.0 bits (99), Expect = 2e-04
Identities = 61/281 (21%), Positives = 99/281 (35%), Gaps = 43/281 (15%)
Query: 2 CDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYP 61
D + G+P P R + + G+E E+ LL++D + L
Sbjct: 84 ADLH-VNGKPYPQAPRVVLKRQLAEAAELGLTLNTGVECEFFLLRRDEDGSLS-IADRAD 141
Query: 62 GPQGPYYCGVGAD-KAL--GRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGI 118
P Y D + L D++ A G + + E GQ+E +
Sbjct: 142 TLAKPCY-----DQRGLMRRYDVLTEISDAMNALGWDPYQNDHEDANGQFEMNFTYADAL 196
Query: 119 SSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKK 178
++ D+ RY+++ I E G+ +F PKP D G G H + S+ ++ G ++
Sbjct: 197 TTADRHAFFRYMVKEIAEKHGMRATFMPKPFA-DLTGNGCHFHL---SLWDEDGRNLFAD 252
Query: 179 A-------IEKLGK-------RHGEHIAA--------YGEGNERRLTGRHETADINTFSW 216
+ KL H + A Y N R T T N S+
Sbjct: 253 DSDPNGLGLSKLAYHFIGGILHHAPALCAVLAPTVNSYKRLNAPR-TTSGATWAPNFISY 311
Query: 217 GVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMI 257
G NR +R+ G FE R +PY+ + I
Sbjct: 312 GGNNRTHMVRI------PDPGRFELRLADGAANPYLAQAAI 346
>gnl|CDD|181884 PRK09469, glnA, glutamine synthetase; Provisional.
Length = 469
Score = 30.9 bits (70), Expect = 0.71
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 122 DQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYS 163
D++ + +Y++ + G +F PKP+ GD NG+G H + S
Sbjct: 234 DEIQIYKYVVHNVAHAFGKTATFMPKPMFGD-NGSGMHCHMS 274
>gnl|CDD|112623 pfam03819, MazG, MazG nucleotide pyrophosphohydrolase domain. This
domain is about 100 amino acid residues in length. It is
found in the MazG protein from E. coli. It contains four
conserved negatively charged residues that probably form
an active site or metal binding site. This domain is
found in isolation in some proteins as well as
associated with pfam00590. This domain is clearly
related to pfam01503 another pyrophosphohydrolase
involved in histidine biosynthesis. This family may be
structurally related to the NUDIX domain pfam00293
(Bateman A pers. obs.).
Length = 74
Score = 28.3 bits (64), Expect = 0.82
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 126 MARYILERITEIAGVVLSFDPKPIK---GD--WNGAGAHANYSTKSMRNDGGI---DVIK 177
+ Y+LE + E+A + D ++ GD HAN +GG DV
Sbjct: 6 LLPYLLEEVYEVAEAIEKEDLDNLEEELGDVLLQ-VLFHAN----LAEEEGGFDLEDVAA 60
Query: 178 KAIEKLGKRH 187
+ +EKL +RH
Sbjct: 61 RIVEKLIRRH 70
>gnl|CDD|217630 pfam03592, Terminase_2, Terminase small subunit. Packaging of
double-stranded viral DNA concatemers requires
interaction of the prohead with virus DNA. This process
is mediated by a phage-encoded DNA recognition and
terminase protein. The terminase enzymes described so
far, which are hetero-oligomers composed of a small and
a large subunit, do not have a significant level of
sequence homology. The small terminase subunit is
thought to form a nucleoprotein structure that helps to
position the terminase large subunit at the packaging
initiation site.
Length = 141
Score = 28.8 bits (65), Expect = 1.6
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 29/94 (30%)
Query: 127 ARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIK--------K 178
A +LE +TEIA G + + K K
Sbjct: 64 ADEVLEELTEIA-----------------RGDETELVLVGTKEGEVEKIEKKVKLKDRLK 106
Query: 179 AIEKLGKRHGEHIAAYGEGNERRLTGRHETADIN 212
A+E LGK +G + + E + ADI+
Sbjct: 107 ALELLGKHYGL----FTDKVEVEGEVKKLKADID 136
>gnl|CDD|185484 PTZ00155, PTZ00155, 40S ribosomal protein S9; Provisional.
Length = 181
Score = 28.1 bits (63), Expect = 3.6
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 117 GISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGA 156
G+ + ++W +Y L +I + A +L+ D K K + G
Sbjct: 35 GLKNKREIWRVQYTLAKIRKAARELLTLDEKDPKRLFEGE 74
>gnl|CDD|224516 COG1600, COG1600, Uncharacterized Fe-S protein [Energy production
and conversion].
Length = 337
Score = 28.5 bits (64), Expect = 3.9
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 193 AYGEGNERRLT--GRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDP 250
Y G E I+ ++WG V R+ K + Y R ++
Sbjct: 74 NYPPKLVEAPASLGDPEKGYISRYAWGRD----YHDVLRERLKALEEYIASRAGDLDVRS 129
Query: 251 YVVTSMIAETTI 262
+V T ++E +
Sbjct: 130 FVDTGPVSERAL 141
>gnl|CDD|222587 pfam14196, ATC_hydrolase, L-2-amino-thiazoline-4-carboxylic acid
hydrolase. This family of enzymes catalyzes the
conversion of L-2-amino-delta2-thiazoline-4-carboxylic
acid (L-ATC) to N-carbamoyl-L-cysteine. It cleaves the
carbon-sulphur bond in the ring structure of L-ATC to
produce N-carbamoyl-L-cysteine.
Length = 149
Score = 27.3 bits (61), Expect = 4.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 174 DVIKKAIEKLGKRHGEHIAAYGEGNERRL 202
+I++AIE G+ G+ AA G L
Sbjct: 33 AIIREAIEAFGEERGKAFAAKAPGKPDDL 61
>gnl|CDD|217058 pfam02476, US2, US2 family. This is a family of unique short
(US) region proteins from the herpesvirus strain. The
US2 family have no known function.
Length = 124
Score = 27.0 bits (60), Expect = 5.0
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 3 DAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPW 35
D P E IP KR AAKV P A W
Sbjct: 21 DLCAPVLEHIPGPKRLVAAKV---PGAWAGASW 50
>gnl|CDD|237581 PRK13994, PRK13994, potassium-transporting ATPase subunit C;
Provisional.
Length = 222
Score = 27.6 bits (61), Expect = 7.1
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 61 PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQW 108
P P ++ A+ LG + VN+ Y L N S N E++ QW
Sbjct: 79 PEPDLKWFQPRPAN-GLGTNSVNTQYSLILSGATNRSADNEELI--QW 123
>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 374
Score = 27.7 bits (61), Expect = 7.8
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 4/35 (11%)
Query: 29 VVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGP 63
+V Y +L + I LG + P
Sbjct: 7 IVCILAS----ISYIILLEVIALDLGVLDNIFMPP 37
>gnl|CDD|226247 COG3724, AstB, Succinylarginine dihydrolase [Amino acid transport
and metabolism].
Length = 442
Score = 27.5 bits (61), Expect = 8.8
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 190 HIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 240
+ G N RL G + + F +G G R GR ++ + E
Sbjct: 170 LLGDEGAANHNRLGGEYGEPGVQLFVYG-REEGNDTRPGRYPARQTREASE 219
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.138 0.443
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,072,026
Number of extensions: 1356343
Number of successful extensions: 1154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1141
Number of HSP's successfully gapped: 23
Length of query: 266
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 171
Effective length of database: 6,723,972
Effective search space: 1149799212
Effective search space used: 1149799212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)