RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 024513
(266 letters)
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB:
2d3b_A* 2d3c_A*
Length = 356
Score = 431 bits (1111), Expect = e-154
Identities = 228/266 (85%), Positives = 250/266 (93%)
Query: 1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGY 60
MCD YTPAGEPIPTNKR++AAK+F P+V AEEPWYGIEQEYTLLQKD NWPLGWP+GG+
Sbjct: 91 MCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGF 150
Query: 61 PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISS 120
PGPQGPYYCG+GA+K+ GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGISS
Sbjct: 151 PGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISS 210
Query: 121 GDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAI 180
GDQ+W+ARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMR +GG +VIK AI
Sbjct: 211 GDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAI 270
Query: 181 EKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 240
EKL RH EHIAAYGEGNERRLTGRHETADINTFSWGVANRGAS+RVGR+TE+ GKGYFE
Sbjct: 271 EKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFE 330
Query: 241 DRRPASNMDPYVVTSMIAETTILWKP 266
DRRPASNMDPYVVTSMIAETTI+WKP
Sbjct: 331 DRRPASNMDPYVVTSMIAETTIVWKP 356
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural
GENO structural genomics consortium, SGC; HET: ADP;
2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A
Length = 384
Score = 404 bits (1040), Expect = e-142
Identities = 152/269 (56%), Positives = 190/269 (70%), Gaps = 7/269 (2%)
Query: 1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGY 60
+C+ + P TN R ++ + PW+G+EQEYTL+ D P GWP G+
Sbjct: 117 LCEVFKYNRRPAETNLRHTCKRIMDMVS--NQHPWFGMEQEYTLMGTD-GHPFGWPSNGF 173
Query: 61 PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISS 120
PGPQGPYYCGVGAD+A GRDIV +HY+ACLYAG+ I+G N EVMP QWEFQ+GPC GIS
Sbjct: 174 PGPQGPYYCGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISM 233
Query: 121 GDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAI 180
GD LW+AR+IL R+ E GV+ +FDPKPI G+WNGAG H N+STK+MR + G+ I++AI
Sbjct: 234 GDHLWVARFILHRVCEDFGVIATFDPKPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAI 293
Query: 181 EKLGKRHGEHIAAY----GEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGK 236
EKL KRH HI AY G N RRLTG HET++IN FS GVANR ASIR+ R +E K
Sbjct: 294 EKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSNINDFSAGVANRSASIRIPRTVGQEKK 353
Query: 237 GYFEDRRPASNMDPYVVTSMIAETTILWK 265
GYFEDRRP++N DP+ VT + T +L +
Sbjct: 354 GYFEDRRPSANCDPFSVTEALIRTCLLNE 382
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation,
cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A
{Saccharomyces cerevisiae}
Length = 370
Score = 396 bits (1020), Expect = e-140
Identities = 161/262 (61%), Positives = 185/262 (70%), Gaps = 3/262 (1%)
Query: 1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGY 60
+ Y G P N R AAK+F EE W+G+EQEYTL + GWP GGY
Sbjct: 95 LAACYNNDGTPNKFNHRHEAAKLF--AAHKDEEIWFGLEQEYTLFDMY-DDVYGWPKGGY 151
Query: 61 PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISS 120
P PQGPYYCGVGA K RD++ +HY+ACLYAG+ ISGIN EVMP QWEFQVGPC GI
Sbjct: 152 PAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDM 211
Query: 121 GDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAI 180
GDQLWMARY L R+ E G+ +SF PKP+KGDWNGAG HAN STK MR GG I++AI
Sbjct: 212 GDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHANVSTKEMRQPGGTKYIEQAI 271
Query: 181 EKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFE 240
EKL KRH EHI YG N+ RLTGRHETA + FS GVANRG+SIR+ R KEG GYFE
Sbjct: 272 EKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFE 331
Query: 241 DRRPASNMDPYVVTSMIAETTI 262
DRRPASN+DPY+VT ++ ET
Sbjct: 332 DRRPASNIDPYLVTGIMCETVC 353
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET:
P3S ADP; 3.50A {Bacteroides fragilis}
Length = 729
Score = 60.8 bits (147), Expect = 9e-11
Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 21/166 (12%)
Query: 20 AAKVFGHPDVVAEEPWYGIEQEYTLLQKDIN------WPLGWPVGGYPGPQ----GPYYC 69
++F ++ G EQEY L+ + G + G+ + +Y
Sbjct: 197 VCQLFDK-NITRVFTNLGWEQEYFLVDTSLYNARPDLRLTGRTLMGHSSAKDQQLEDHYF 255
Query: 70 GVGADKALG--RDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMA 127
G + +++ +K GI + + EV P Q+E + D +
Sbjct: 256 GSIPPRVTAFMKELEIECHKL----GIPVKTRHNEVAPNQFELAPIFENCNLANDHNQLV 311
Query: 128 RYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGI 173
+++RI + F KP G NG+G H N+ S+ D GI
Sbjct: 312 MDLMKRIARKHHFAVLFHEKPYNGV-NGSGKHNNW---SLCTDTGI 353
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT
AMP; 3.05A {Bacillus subtilis}
Length = 444
Score = 42.1 bits (100), Expect = 1e-04
Identities = 48/173 (27%), Positives = 70/173 (40%), Gaps = 26/173 (15%)
Query: 1 MCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWY-----GIEQEYTLLQKDINWPLGW 55
+CD Y P G P + R N ++ E+ + G E E+ L + D
Sbjct: 93 ICDIYNPDGTPFEGDPRNNLKRILKE----MEDLGFSDFNLGPEPEFFLFKLDEKGEPTL 148
Query: 56 PV---GGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWE--F 110
+ GGY P +G + RDIV G I + EV PGQ E F
Sbjct: 149 ELNDKGGY-FDLAPT--DLGEN--CRRDIVL----ELEEMGFEIEASHHEVAPGQHEIDF 199
Query: 111 QVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYS 163
+ V S D + + +++ I G+ +F PKP+ G NG+G H N S
Sbjct: 200 KYAGAV--RSCDDIQTFKLVVKTIARKHGLHATFMPKPLFGV-NGSGMHCNLS 249
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 39.8 bits (94), Expect = 5e-04
Identities = 30/176 (17%), Positives = 50/176 (28%), Gaps = 25/176 (14%)
Query: 92 AGINISGINGEVMPGQWEFQVGPC-VGISSGDQLWMARYILERITEIAGVVLSFDPKPIK 150
AG G G E P G ++ D + R L+ + + S
Sbjct: 164 AGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVARRYNAIASAAAAAAA 223
Query: 151 GDWNGAGAHANYS-TKSMRN----DGGIDVIKKAIEKLG--KRHGEHIAA--------YG 195
GAG+H+ + + N G + L AA
Sbjct: 224 AA-AGAGSHSIWDVGAAGTNAFAGASGARATLTGAKWLAGLLAAAAAAAAAAAAAAAAA- 281
Query: 196 EGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY 251
A T +WG A ++ + +G E++ A+ +PY
Sbjct: 282 ----AAAAAGAA-AAAAT-AWGAAAAACALNIAAAAAAKGA-QIENKAGAAAANPY 330
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S
ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1
d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A*
1htq_A*
Length = 486
Score = 34.9 bits (81), Expect = 0.022
Identities = 42/178 (23%), Positives = 64/178 (35%), Gaps = 47/178 (26%)
Query: 102 EVMP-GQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHA 160
EV GQ E + + D + + +YI++ G ++F PKP+ GD NG+G H
Sbjct: 227 EVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGD-NGSGMHC 285
Query: 161 NYS-TKSMRND------------------GGIDVIKKAIEKLGKRHGEHIAA-------- 193
+ S K GG+ + H + A
Sbjct: 286 HQSLWKDGAPLMYDETGYAGLSDTARHYIGGL--LH---------HAPSLLAFTNPTVNS 334
Query: 194 YGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPY 251
Y +RL +E A IN + NR A +R+ E R P S+ +PY
Sbjct: 335 Y-----KRLVPGYE-APIN-LVYSQRNRSACVRIPITGSNPKAKRLEFRSPDSSGNPY 385
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET:
ANP; 2.80A {Synechocystis SP}
Length = 473
Score = 34.1 bits (79), Expect = 0.039
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 102 EVMP-GQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHA 160
EV GQ E + ++S D L + +Y+++ + + G ++F PKPI D NG+G H
Sbjct: 215 EVASGGQNELGIKFDKLVNSADNLMIYKYVIKNVAKKYGKTVTFMPKPIFND-NGSGMHV 273
Query: 161 NYS 163
+ S
Sbjct: 274 HQS 276
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella
typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A*
1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Length = 468
Score = 33.3 bits (77), Expect = 0.073
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 102 EVMP-GQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHA 160
EV GQ E D++ + +Y++ + G +F PKP+ GD NG+G H
Sbjct: 212 EVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGD-NGSGMHC 270
Query: 161 NYS 163
+ S
Sbjct: 271 HMS 273
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.12
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 35/87 (40%)
Query: 103 VMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANY 162
+ PG+ V S + +Y++ER+ + G ++ I NY
Sbjct: 1812 INPGR--------VAASFSQE--ALQYVVERVGKRTGWLVE-----I----------VNY 1846
Query: 163 STKSMRN-DGGIDVI---KKAIEKLGK 185
N + V +A++ +
Sbjct: 1847 ------NVENQQYVAAGDLRALDTVTN 1867
Score = 32.7 bits (74), Expect = 0.14
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 22/77 (28%)
Query: 137 IAGVVLSFD-----------------PKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKA 179
+A V +S + P+ G N N + + ++
Sbjct: 1773 LADV-MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG--RVAASFSQEALQYV 1829
Query: 180 IEKLGKRHGEH--IAAY 194
+E++GKR G I Y
Sbjct: 1830 VERVGKRTGWLVEIVNY 1846
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 0.20
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 13/84 (15%)
Query: 181 EKLGKRHGEH--IAAYGEGNERRLTGRHETA----DINTFSWGVANRGASIRVGRDTEKE 234
E+ +HG+ I E E + F VA I G + +
Sbjct: 943 EQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVA---GQIPTGWNAKT- 998
Query: 235 GKGYFEDRRPASNMDPYVVTSMIA 258
Y S +DP + +++
Sbjct: 999 ---YGISDDIISQVDPITLFVLVS 1019
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 30.9 bits (71), Expect = 0.31
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 158 AHANYSTKSMRNDGGIDVIKKAIEKLG 184
+A+Y TK +GG + I +EK G
Sbjct: 203 ENADYVTKKEYGEGGAEAIYHILEKFG 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.37
Identities = 46/264 (17%), Positives = 79/264 (29%), Gaps = 80/264 (30%)
Query: 10 EPIPTNKRFNAAKVFGHP-DV-----VAEEPWYGIEQE-----------YTLLQKDINWP 52
EP K F+ VF P + W+ + + Y+L++K
Sbjct: 367 EPAEYRKMFDRLSVF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ---- 420
Query: 53 LGWPVGGY--PGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEF 110
P + + AL R IV+ HY + + + + +
Sbjct: 421 --PKESTISIPSIYLELKVKLENEYALHRSIVD-HYN--IPKTFDSDDLIPPYLDQYFYS 475
Query: 111 QVGPCVGISSGDQLWMARYILERITEIAGVVLSF---DPKPIKGD---WNGAGAHAN--- 161
+G L + ER+T V L F + K I+ D WN +G+ N
Sbjct: 476 HIG--------HHLKNIEHP-ERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQ 525
Query: 162 ----YSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWG 217
Y ND + + AI + E++ + D+
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI------------CSKYTDL------ 567
Query: 218 VANRGASIRVGRDTEKEGKGYFED 241
+R+ E E FE+
Sbjct: 568 -------LRIALMAEDE--AIFEE 582
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 28.7 bits (64), Expect = 0.77
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 7/67 (10%)
Query: 198 NERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMI 257
E L G + DI G+ I + +G P N +V S +
Sbjct: 47 KEHTLIGSANSQDIQLCGMGILPEHCII------DITSEGQVM-LTPQKNTRTFVNGSSV 99
Query: 258 AETTILW 264
+ L
Sbjct: 100 SSPIQLH 106
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 27.1 bits (61), Expect = 5.8
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 158 AHANYSTKSMRNDGGIDVIKKAIEKLG 184
A++ TK + +G I +++L
Sbjct: 233 RVADFVTKPVDKEG----IWYGLKQLQ 255
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 27.2 bits (61), Expect = 6.0
Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 10/72 (13%)
Query: 126 MARYILERITEIA---GVVLSFDPKPIKGDWNGAGAHANYSTKSMRND--GG----IDVI 176
+ R I+ + A G+ + A Y SM D G I I
Sbjct: 216 LVRGIMLEVIAGANAQGLATFIADGYVDDMLEFTDAMGEYKP-SMEIDREEGRPLEIAAI 274
Query: 177 KKAIEKLGKRHG 188
+ G R G
Sbjct: 275 FRTPLAYGAREG 286
>2iia_A Sensory rhodopsin transducer protein; signaling protein; 1.80A
{Anabaena SP} PDB: 2ii9_A 2ii7_A 2ii8_A
Length = 131
Score = 26.5 bits (58), Expect = 6.5
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 17/73 (23%)
Query: 181 EKLGKRH----GEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGK 236
+G+ +I YG G E + +N + A + +
Sbjct: 9 LSIGRTCWAIAEGYIPPYGNGPEPQFISHETVCILNA-----GDEDAHVEI--------T 55
Query: 237 GYFEDRRPASNMD 249
Y+ D+ P
Sbjct: 56 IYYSDKEPVGPYR 68
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 27.1 bits (61), Expect = 7.3
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 169 NDGGIDVIKKAIEKLGKRHGEHIA 192
+ G++ I AIE G G+ +
Sbjct: 225 TEDGVETILAAIEAAGYVPGKDVF 248
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Length = 428
Score = 26.7 bits (60), Expect = 8.2
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 169 NDGGIDVIKKAIEKLGKRHGEHIA 192
N+ ++I +AIE G+ I
Sbjct: 217 NEAAFELILEAIEDANYVPGKDIY 240
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 26.3 bits (59), Expect = 8.4
Identities = 2/27 (7%), Positives = 9/27 (33%), Gaps = 4/27 (14%)
Query: 158 AHANYSTKSMRNDGGIDVIKKAIEKLG 184
A +++ + + I + +
Sbjct: 203 AVSDFVSDYSYGEE----IGQIFKHFE 225
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A
{Anaerostipes caccae}
Length = 449
Score = 26.7 bits (60), Expect = 8.5
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 169 NDGGIDVIKKAIEKLGKRHGEHIA 192
++ I+ I +A++ G G
Sbjct: 239 DEEAIEYILEAVKLAGYEPGRDFV 262
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Length = 431
Score = 26.7 bits (60), Expect = 9.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 169 NDGGIDVIKKAIEKLGKRHGEHIA 192
N + VI +A++ G G+ I
Sbjct: 218 NAEALAVIAEAVKAAGYELGKDIT 241
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.138 0.443
Gapped
Lambda K H
0.267 0.0813 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,475,857
Number of extensions: 283699
Number of successful extensions: 764
Number of sequences better than 10.0: 1
Number of HSP's gapped: 757
Number of HSP's successfully gapped: 31
Length of query: 266
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,133,061
Effective search space: 719152614
Effective search space used: 719152614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)