BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024514
         (266 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
           Resolution 2.5a, Northeast Structural Genomics
           Consortium Target Psr10
 pdb|3KKJ|B Chain B, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
           Resolution 2.5a, Northeast Structural Genomics
           Consortium Target Psr10
          Length = 336

 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 126/291 (43%), Gaps = 67/291 (23%)

Query: 16  FDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFD--RVSKKFVNIQQDGMNKKYV 73
            D GA +FT  +      V++W++ G VAEW   L +F   R+S             ++V
Sbjct: 51  LDXGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPS------PDEQVRWV 104

Query: 74  GVPGMNSICKALCHQPDLTF---------------------------------------- 93
           G PG ++I +A      ++F                                        
Sbjct: 105 GKPGXSAITRAXRGDXPVSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQAS 164

Query: 94  -----APDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGR 148
                AP LA  +  +  +P +A+ LAF  PL + P +G   QDS  L W   + SKP R
Sbjct: 165 TLLAAAPKLASVVAGVKXDPTWAVALAFETPLQT-PXQGCFVQDSP-LDWLARNRSKPER 222

Query: 149 SANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEF-QGTGLSIPLPIFRKA 207
               + W+LH+T+ ++R  +         +A+ ++V E +   F +    + P P+F  A
Sbjct: 223 DDTLDTWILHATSQWSRQNL---------DASREQVIEHLHGAFAELIDCTXPAPVFSLA 273

Query: 208 HRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASK 258
           HRW  A PA   A E   L D    + +CGD+C+S  VEGA LSG +AA +
Sbjct: 274 HRWLYARPAG--AHEWGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARR 322


>pdb|3QJ4|A Chain A, Crystal Structure Of Human Renalase (Isoform 1)
 pdb|3QJ4|B Chain B, Crystal Structure Of Human Renalase (Isoform 1)
          Length = 342

 Score = 30.8 bits (68), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 156 VLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRW-GSAF 214
           V+H+T  +  T +         E +++ V E +FQ+ +     +P PI  K  +W  S  
Sbjct: 243 VIHTTVPFGVTYL---------EHSIEDVQELVFQQLENILPGLPQPIATKCQKWRHSQV 293

Query: 215 PAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGL 253
             A+     +     K  LA  GD     N +G I S L
Sbjct: 294 TNAAANCPGQMTLHHKPFLACGGDGFTQSNFDGCITSAL 332


>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
 pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
 pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
 pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
 pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
 pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
 pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
 pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
           DISULFIDE
          Length = 519

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 22  FFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVS-KKFVNIQQDGMNK 70
           FFT    D LALV E E   L  E  ++L  +  V+ ++ +N + D +NK
Sbjct: 151 FFTRNKADYLALVFEREDSYLGREVTLDLSQYHAVAVRRVLNTESDLVNK 200


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,104,038
Number of Sequences: 62578
Number of extensions: 320488
Number of successful extensions: 705
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 4
length of query: 266
length of database: 14,973,337
effective HSP length: 97
effective length of query: 169
effective length of database: 8,903,271
effective search space: 1504652799
effective search space used: 1504652799
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)