BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024514
         (266 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8R116|NOTUM_MOUSE Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2
          Length = 503

 Score = 32.7 bits (73), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 92  TFAPDLAVKLEEIP-VNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKP---- 146
           ++  D+ VK   +P    C+      S   S  P+KG  F   +   W HC+ S P    
Sbjct: 402 SYWTDVQVKGTSLPRALHCWDRSFHDSHKASKTPMKGCPFHLVDSCPWPHCNPSCPTIRD 461

Query: 147 ---GRSANSERWVLHSTADYARTVIAQTGLQ 174
              G+  N  ++++H   D  +TV  Q G++
Sbjct: 462 QFTGQEMNVAQFLMHMGFD-VQTVAQQQGME 491


>sp|P10964|RPA1_YEAST DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=RPA190 PE=1
           SV=2
          Length = 1664

 Score = 32.3 bits (72), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 3   QRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVN 62
           Q+ + S +   ++F      F    NDV A +   ++ G  +  KV +    +  +K   
Sbjct: 407 QKDKVSLEDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGRTS-GKVPIPGVKQALEK--- 462

Query: 63  IQQDGMNKKYVGVPGMNSICKALCHQPDLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSS 122
             ++G+ +K++    +N   +++        +PD  ++  EI V P FA+ L + EP+++
Sbjct: 463 --KEGLFRKHMMGKRVNYAARSV-------ISPDPNIETNEIGVPPVFAVKLTYPEPVTA 513

Query: 123 IPV 125
             +
Sbjct: 514 YNI 516


>sp|A8G7E1|MIAA_PROM2 tRNA dimethylallyltransferase OS=Prochlorococcus marinus (strain
           MIT 9215) GN=miaA PE=3 SV=1
          Length = 299

 Score = 32.0 bits (71), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 47  KVNLGSFDRVSKKFVN--IQQDGMNKKYVGVPG--MNSICKALCHQPDLTFAPDLAVKLE 102
           ++N+  F ++++K +   I QD +    VG  G  MNSI K     PD+    +L ++LE
Sbjct: 74  QINVQQFQKIAQKSIKREINQDNL-PFLVGGSGLYMNSITKGFFI-PDIPPQNNLRIQLE 131

Query: 103 EIPVNPCFALMLAFSEPLSSIPVKGFSFQD 132
           E+    C+ L L   +PLS+   K  SF D
Sbjct: 132 ELGQKKCWEL-LNNCDPLST---KNISFAD 157


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,354,232
Number of Sequences: 539616
Number of extensions: 4084803
Number of successful extensions: 8019
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8019
Number of HSP's gapped (non-prelim): 4
length of query: 266
length of database: 191,569,459
effective HSP length: 115
effective length of query: 151
effective length of database: 129,513,619
effective search space: 19556556469
effective search space used: 19556556469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)