Query 024514
Match_columns 266
No_of_seqs 147 out of 518
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 100.0 6.8E-58 1.5E-62 390.1 15.7 240 1-263 40-331 (331)
2 TIGR00562 proto_IX_ox protopor 99.7 1.6E-16 3.5E-21 149.9 13.7 160 96-264 290-461 (462)
3 PRK12416 protoporphyrinogen ox 99.6 6.4E-15 1.4E-19 139.3 15.2 159 95-263 288-461 (463)
4 PLN02576 protoporphyrinogen ox 99.6 7.6E-15 1.7E-19 139.9 13.1 161 95-264 307-488 (496)
5 PRK11883 protoporphyrinogen ox 99.6 1.1E-13 2.4E-18 129.9 16.1 159 95-261 283-450 (451)
6 TIGR03467 HpnE squalene-associ 99.3 3.5E-11 7.6E-16 111.5 15.1 149 96-260 263-418 (419)
7 KOG1276 Protoporphyrinogen oxi 99.3 3.5E-11 7.5E-16 109.7 11.3 158 94-260 318-490 (491)
8 COG1232 HemY Protoporphyrinoge 99.2 2.2E-10 4.8E-15 107.1 13.1 154 98-260 279-443 (444)
9 PLN02328 lysine-specific histo 99.0 1.5E-08 3.3E-13 101.0 17.2 154 96-263 502-679 (808)
10 PLN02268 probable polyamine ox 99.0 1.8E-08 4E-13 94.5 16.9 151 98-263 269-434 (435)
11 PLN02529 lysine-specific histo 99.0 2E-08 4.4E-13 99.6 16.4 156 97-264 423-599 (738)
12 PRK07233 hypothetical protein; 99.0 1.4E-08 2.9E-13 94.8 14.1 158 97-265 266-433 (434)
13 PF01593 Amino_oxidase: Flavin 98.8 3.1E-08 6.7E-13 90.9 11.8 154 97-260 279-450 (450)
14 TIGR02732 zeta_caro_desat caro 98.6 3.8E-07 8.3E-12 86.9 10.5 81 180-260 387-474 (474)
15 PLN02612 phytoene desaturase 98.6 8.1E-07 1.7E-11 86.5 12.8 159 96-265 379-550 (567)
16 PLN03000 amine oxidase 98.5 6.3E-06 1.4E-10 82.9 17.3 157 97-265 447-625 (881)
17 TIGR02731 phytoene_desat phyto 98.4 7.1E-06 1.5E-10 77.5 13.8 150 97-259 290-452 (453)
18 PRK07208 hypothetical protein; 98.3 6E-06 1.3E-10 78.5 10.9 158 96-263 292-461 (479)
19 COG1231 Monoamine oxidase [Ami 98.3 1.6E-05 3.4E-10 73.9 13.1 161 94-265 273-449 (450)
20 PLN02487 zeta-carotene desatur 98.2 1.7E-05 3.6E-10 77.2 11.5 84 180-263 463-553 (569)
21 PLN02676 polyamine oxidase 97.6 0.0015 3.3E-08 62.5 14.5 154 98-264 303-474 (487)
22 PLN02976 amine oxidase 97.5 0.0038 8.2E-08 66.0 16.3 154 99-264 1015-1187(1713)
23 PLN02568 polyamine oxidase 97.3 0.0053 1.2E-07 59.6 14.3 159 98-266 317-538 (539)
24 TIGR02733 desat_CrtD C-3',4' d 97.2 0.018 3.8E-07 55.1 16.0 155 96-261 307-490 (492)
25 TIGR02730 carot_isom carotene 97.1 0.14 3.1E-06 49.0 20.8 186 71-263 277-492 (493)
26 TIGR02734 crtI_fam phytoene de 96.3 0.062 1.4E-06 51.4 12.2 35 229-263 457-492 (502)
27 KOG0029 Amine oxidase [Seconda 92.9 3.2 6.9E-05 40.1 13.8 155 97-263 287-459 (501)
28 KOG0685 Flavin-containing amin 86.2 2.3 4.9E-05 40.5 6.6 84 180-263 386-491 (498)
29 KOG4254 Phytoene desaturase [C 74.7 27 0.00059 33.4 9.4 123 135-261 399-544 (561)
30 PF13450 NAD_binding_8: NAD(P) 72.1 2.8 6.1E-05 28.7 1.8 24 14-37 43-68 (68)
31 TIGR03862 flavo_PP4765 unchara 69.2 6.3 0.00014 36.6 4.0 36 228-263 334-375 (376)
32 COG3349 Uncharacterized conser 67.0 13 0.00027 35.8 5.5 37 227-263 424-463 (485)
33 PRK13984 putative oxidoreducta 62.2 9 0.00019 37.7 3.8 35 230-264 568-602 (604)
34 PRK12809 putative oxidoreducta 61.2 11 0.00025 37.4 4.4 36 230-265 600-636 (639)
35 TIGR01316 gltA glutamate synth 59.1 12 0.00027 35.3 4.1 34 230-263 415-449 (449)
36 PRK12769 putative oxidoreducta 58.6 15 0.00032 36.6 4.7 36 229-264 616-652 (654)
37 COG0644 FixC Dehydrogenases (f 56.8 17 0.00038 33.6 4.6 35 230-264 268-308 (396)
38 PRK12831 putative oxidoreducta 56.4 15 0.00032 35.0 4.1 35 230-264 426-461 (464)
39 COG2081 Predicted flavoprotein 55.9 13 0.00027 34.8 3.4 35 229-263 367-407 (408)
40 PRK12810 gltD glutamate syntha 54.8 19 0.00042 34.2 4.6 36 229-264 429-465 (471)
41 PRK12770 putative glutamate sy 53.0 21 0.00046 32.4 4.4 36 229-264 314-350 (352)
42 PRK11749 dihydropyrimidine deh 51.2 18 0.00039 34.2 3.8 35 230-264 417-452 (457)
43 PRK10157 putative oxidoreducta 51.0 21 0.00045 33.5 4.1 34 230-263 294-335 (428)
44 TIGR01318 gltD_gamma_fam gluta 50.3 26 0.00057 33.3 4.8 35 230-264 431-466 (467)
45 PRK12779 putative bifunctional 49.6 22 0.00047 37.2 4.3 35 229-263 591-626 (944)
46 PRK12775 putative trifunctiona 47.3 29 0.00062 36.6 4.8 36 229-264 719-755 (1006)
47 COG1233 Phytoene dehydrogenase 45.9 1.1E+02 0.0025 29.2 8.4 33 229-261 448-481 (487)
48 TIGR01317 GOGAT_sm_gam glutama 45.7 33 0.00071 32.9 4.6 36 229-264 443-479 (485)
49 PRK12778 putative bifunctional 45.1 28 0.0006 35.4 4.2 35 230-264 715-750 (752)
50 TIGR02028 ChlP geranylgeranyl 44.1 37 0.00081 31.5 4.6 33 231-263 270-308 (398)
51 PRK12771 putative glutamate sy 44.0 30 0.00065 33.8 4.1 36 229-264 408-444 (564)
52 TIGR01292 TRX_reduct thioredox 42.9 27 0.00058 30.2 3.4 35 229-263 264-300 (300)
53 PRK10015 oxidoreductase; Provi 38.8 43 0.00092 31.5 4.2 34 230-263 294-335 (429)
54 TIGR01372 soxA sarcosine oxida 36.2 49 0.0011 34.8 4.5 34 230-263 438-471 (985)
55 PLN00093 geranylgeranyl diphos 36.1 52 0.0011 31.3 4.3 33 231-263 309-347 (450)
56 PF05678 VQ: VQ motif; InterP 36.0 36 0.00077 19.7 2.0 19 20-38 5-23 (31)
57 PRK12814 putative NADPH-depend 35.7 55 0.0012 32.7 4.6 36 229-264 465-501 (652)
58 TIGR02023 BchP-ChlP geranylger 34.2 68 0.0015 29.4 4.7 34 230-263 263-302 (388)
59 TIGR02032 GG-red-SF geranylger 32.8 1.8E+02 0.0039 24.8 7.0 30 230-259 260-295 (295)
60 COG1759 5-formaminoimidazole-4 32.3 43 0.00093 30.5 2.9 27 19-45 163-190 (361)
61 PF03486 HI0933_like: HI0933-l 31.7 35 0.00075 32.1 2.3 30 228-257 373-408 (409)
62 PF15320 RAM: mRNA cap methyla 31.3 25 0.00054 25.2 1.0 27 23-49 11-38 (81)
63 TIGR03315 Se_ygfK putative sel 30.0 60 0.0013 34.3 3.9 33 230-262 805-838 (1012)
64 TIGR00275 flavoprotein, HI0933 28.7 42 0.00091 31.2 2.3 28 229-256 366-399 (400)
65 TIGR01984 UbiH 2-polyprenyl-6- 27.7 4.5E+02 0.0098 23.6 17.9 33 230-262 275-313 (382)
66 PRK08294 phenol 2-monooxygenas 26.8 2.2E+02 0.0048 28.4 7.1 16 72-87 202-217 (634)
67 PRK09853 putative selenate red 26.3 87 0.0019 33.1 4.3 35 229-263 806-841 (1019)
68 PRK11445 putative oxidoreducta 25.0 1.1E+02 0.0024 27.6 4.4 34 230-263 263-302 (351)
69 TIGR01421 gluta_reduc_1 glutat 24.7 1.1E+02 0.0025 28.8 4.5 33 229-261 294-327 (450)
70 PRK09126 hypothetical protein; 24.1 89 0.0019 28.4 3.6 34 230-263 279-318 (392)
71 PLN02852 ferredoxin-NADP+ redu 23.5 70 0.0015 30.9 2.8 34 230-263 386-421 (491)
72 PRK06116 glutathione reductase 23.3 1.2E+02 0.0025 28.6 4.3 33 229-261 294-327 (450)
73 TIGR03143 AhpF_homolog putativ 23.3 85 0.0019 30.6 3.5 35 229-263 272-308 (555)
74 TIGR01988 Ubi-OHases Ubiquinon 22.6 1.1E+02 0.0024 27.5 4.0 33 230-262 275-313 (385)
75 PRK10262 thioredoxin reductase 22.1 60 0.0013 28.9 2.0 37 228-264 277-315 (321)
76 PTZ00318 NADH dehydrogenase-li 21.6 1.5E+02 0.0033 27.6 4.7 35 229-263 307-347 (424)
77 PRK06996 hypothetical protein; 21.2 6.1E+02 0.013 23.2 8.6 32 230-261 290-327 (398)
78 PF01494 FAD_binding_3: FAD bi 21.1 87 0.0019 27.5 2.8 33 231-263 291-329 (356)
79 TIGR03140 AhpF alkyl hydropero 20.8 48 0.001 32.0 1.1 36 229-264 476-513 (515)
80 PRK05335 tRNA (uracil-5-)-meth 20.1 3.6E+02 0.0077 25.7 6.7 36 228-263 328-363 (436)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=6.8e-58 Score=390.10 Aligned_cols=240 Identities=31% Similarity=0.565 Sum_probs=206.6
Q ss_pred CCccccccCCCCccccccCCCeeeeCChhHHHHHHHHHhCCccccccccceeeecCCceeeecccCCCCccEEeCCCchH
Q 024514 1 MSQRRETSEDGNEMLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNS 80 (266)
Q Consensus 1 mstrr~~~~~~~~~~~DhGaqyfta~~~~f~~~~~~~~~~g~v~~W~~~~~~~~~~~~~~~~~~~~~~~~~yvg~pgm~~ 80 (266)
|+|||. +.+ .||||||||+++++.|.++|+.|.++|+|.+|+..++++.+++ .. +..++.+ |||.|||++
T Consensus 40 lAtRRl--~~g---~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~~~~~~~~~~--~~--~~~d~~p-yvg~pgmsa 109 (331)
T COG3380 40 LATRRL--DGG---RFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTFTGDG--SP--PRGDEDP-YVGEPGMSA 109 (331)
T ss_pred hheecc--CCc---cccccceeecCCchHHHHHHHHHHhCCceeeccccccccccCC--CC--CCCCCCc-cccCcchHH
Confidence 799998 555 4999999999999999999999999999999998888875442 11 1222233 999999999
Q ss_pred HHHHHhcCCC------------------------------------CC------C-------Ch-hHHHHhccCCCccee
Q 024514 81 ICKALCHQPD------------------------------------LT------F-------AP-DLAVKLEEIPVNPCF 110 (266)
Q Consensus 81 l~~~l~~~~~------------------------------------~~------~-------~p-~l~~~l~~v~y~p~~ 110 (266)
|+|+|+++++ ++ + .| .++..+..|.|.|||
T Consensus 110 lak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~ 189 (331)
T COG3380 110 LAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCW 189 (331)
T ss_pred HHHHHhccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHH
Confidence 9999999880 00 0 23 367889999999999
Q ss_pred eEeeccCCCCCCCCCcceEecCCCceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhcCCCCCChhhHHHHHHHHHH
Q 024514 111 ALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQ 190 (266)
Q Consensus 111 ~l~l~~~~~~~~~p~~g~~~~~~~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~~~~~~~~~~~~v~~~l~~ 190 (266)
+++++|+++++ .|++|.++ ++++|+|+++|.+||||.|.++.||+|++++||+.|++. +++++...|..
T Consensus 190 s~~lg~~q~l~-~P~~G~~v-dg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~---------~~e~~i~~l~a 258 (331)
T COG3380 190 SAVLGYPQPLD-RPWPGNFV-DGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDH---------PAEQVIVALRA 258 (331)
T ss_pred HHHhcCCccCC-CCCCCccc-CCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcC---------CHHHHHHHHHH
Confidence 99999999987 79999665 556899999999999999988899999999999999998 57888888888
Q ss_pred HHHhcCC-CCCCCcEEeEeccCCCCCCcccCCccCeee-cCCCCeEEeeCCCCCCChhHHHHHHHHHHHHHHHHh
Q 024514 191 EFQGTGL-SIPLPIFRKAHRWGSAFPAASIAKEERCLW-DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 191 ~~~~l~~-~l~~p~~~~~hRW~~A~p~~~~~~~~~~~~-~~~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
++..+.+ .++.|.++.+||||||+|++..+ .++++ +.+.+|++|||||.|++||+|++||+++|++|++.|
T Consensus 259 A~~~~~~~~~~~p~~s~~H~WrYA~P~~~~~--~~~L~ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 259 AAQELDGDRLPEPDWSDAHRWRYAIPNDAVA--GPPLDADRELPLYACGDWCAGGRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred hhhhccCCCCCcchHHHhhcccccccccccc--CCccccCCCCceeeecccccCcchhHHHhccHHHHHHHHhcC
Confidence 8887644 68899999999999999999876 46787 889999999999999999999999999999998764
No 2
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.70 E-value=1.6e-16 Score=149.87 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=116.7
Q ss_pred hHHHHhccCCCcceeeEeeccCCCC-CC-CCCcceEecCC---CceEEEEeCCCCCCCCCCC-CcEEEEeChHHHHHhHh
Q 024514 96 DLAVKLEEIPVNPCFALMLAFSEPL-SS-IPVKGFSFQDS---EVLSWAHCDSSKPGRSANS-ERWVLHSTADYARTVIA 169 (266)
Q Consensus 96 ~l~~~l~~v~y~p~~~l~l~~~~~~-~~-~p~~g~~~~~~---~~l~wi~~~ssKpgr~~~~-~~~vl~ss~~~s~~~~~ 169 (266)
...+.++++.|.||+++++.|+++. .. .+..|++++.+ ..++|+..++.+|++.+.+ ..++++.+..++..+.+
T Consensus 290 ~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~ 369 (462)
T TIGR00562 290 SASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVD 369 (462)
T ss_pred HHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccC
Confidence 4567788999999999999998752 21 12234455433 4578776555558887633 34566665555544444
Q ss_pred hcCCCCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccCCcc------CeeecCCCCeEEeeCCCCCC
Q 024514 170 QTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEE------RCLWDVKRRLAICGDFCVSP 243 (266)
Q Consensus 170 ~~~~~~~~~~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~~~~------~~~~~~~~~l~~~GDw~~g~ 243 (266)
. +++++.+.++++|.++++....|.+..+|||++|+|++.+++.. .++....++|++||||+.|.
T Consensus 370 ~---------~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~ 440 (462)
T TIGR00562 370 L---------SENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGV 440 (462)
T ss_pred C---------CHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCC
Confidence 3 57889999999998775433358999999999999999988632 11223457999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHhc
Q 024514 244 NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 244 ~vE~A~~SG~~~A~~l~~~l~ 264 (266)
++|+|+.||.++|++|+..+-
T Consensus 441 ~i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 441 GIPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred cHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988763
No 3
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.63 E-value=6.4e-15 Score=139.29 Aligned_cols=159 Identities=12% Similarity=0.194 Sum_probs=115.2
Q ss_pred hhHHHHhccCCCcceeeEeeccCCCCCCCCC--cceEecCCCce--EEEEeCCCC-CCCCCCCCcEEEEeChHHH----H
Q 024514 95 PDLAVKLEEIPVNPCFALMLAFSEPLSSIPV--KGFSFQDSEVL--SWAHCDSSK-PGRSANSERWVLHSTADYA----R 165 (266)
Q Consensus 95 p~l~~~l~~v~y~p~~~l~l~~~~~~~~~p~--~g~~~~~~~~l--~wi~~~ssK-pgr~~~~~~~vl~ss~~~s----~ 165 (266)
|.+.+.+.++.|.+|.+++++|+++....|. .|+++++++.+ .-+.+.|+| |++.+ ...+++..+..++ .
T Consensus 288 ~~l~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~-~~~~l~~~~~~~~~~~~~ 366 (463)
T PRK12416 288 NELNEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSG-KQKLLVRMFYKSTNPVYE 366 (463)
T ss_pred cchhHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCC-CCeEEEEEEeCCCCCCch
Confidence 4566778899999999999999965311333 45566654432 224567777 66665 3456666544432 2
Q ss_pred HhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccCCcc------CeeecCCCCeEEeeCC
Q 024514 166 TVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEE------RCLWDVKRRLAICGDF 239 (266)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~~~~------~~~~~~~~~l~~~GDw 239 (266)
...+. +++++.+.++++++++++....|++..++||++++|+|..++.. ..+..+.++|++||||
T Consensus 367 ~~~~~---------~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~ 437 (463)
T PRK12416 367 TIKNY---------SEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGAS 437 (463)
T ss_pred hhhcC---------CHHHHHHHHHHHHHHHhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccc
Confidence 22222 57889999999999765544579999999999999999887532 1233456899999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHh
Q 024514 240 CVSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 240 ~~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
+.|.++|+|+.||..+|++|++.+
T Consensus 438 ~~g~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 438 YYGVGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred cccccHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998765
No 4
>PLN02576 protoporphyrinogen oxidase
Probab=99.60 E-value=7.6e-15 Score=139.85 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=113.6
Q ss_pred hhHHHHhccCCCcceeeEeeccCCCCCCC------CCcce--EecCC---CceEEEEeCCCCCCCCCCC-CcEEEEeChH
Q 024514 95 PDLAVKLEEIPVNPCFALMLAFSEPLSSI------PVKGF--SFQDS---EVLSWAHCDSSKPGRSANS-ERWVLHSTAD 162 (266)
Q Consensus 95 p~l~~~l~~v~y~p~~~l~l~~~~~~~~~------p~~g~--~~~~~---~~l~wi~~~ssKpgr~~~~-~~~vl~ss~~ 162 (266)
|.+.+.++++.|.||+++++.|+++.... +..++ +++.. ..++|+...+.+|+|.+.+ ..++++....
T Consensus 307 ~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~ 386 (496)
T PLN02576 307 PAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGS 386 (496)
T ss_pred HHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCC
Confidence 34566788999999999999998853111 33444 34322 3567776666669987743 2344444444
Q ss_pred HHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCC--CCCcEEeEeccCCCCCCcccCCccCe-----eecCC--CCe
Q 024514 163 YARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSI--PLPIFRKAHRWGSAFPAASIAKEERC-----LWDVK--RRL 233 (266)
Q Consensus 163 ~s~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~l~~~l--~~p~~~~~hRW~~A~p~~~~~~~~~~-----~~~~~--~~l 233 (266)
....+.+. +++++.+.+++++.++++.. +.|....+|||++|+|++..|+.... ..+.. ++|
T Consensus 387 ~~~~~~~~---------s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l 457 (496)
T PLN02576 387 RNTGIASA---------SEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGL 457 (496)
T ss_pred CCcccccC---------CHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCE
Confidence 33333333 57889999999998865422 36788899999999999998763211 12333 699
Q ss_pred EEeeCCCCCCChhHHHHHHHHHHHHHHHHhc
Q 024514 234 AICGDFCVSPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 234 ~~~GDw~~g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
++||||+.|++||+|+.||.++|++|+..+.
T Consensus 458 ~~aG~~~~g~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 458 FLGGNYRGGVALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred EEeccccCCccHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988764
No 5
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.56 E-value=1.1e-13 Score=129.89 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=114.9
Q ss_pred hhHHHHhccCCCcceeeEeeccCCCC-CCCCCcceEecC--CCceEEEEeCCCC-CCCCCCCCcEEEEeChHHHHHhHhh
Q 024514 95 PDLAVKLEEIPVNPCFALMLAFSEPL-SSIPVKGFSFQD--SEVLSWAHCDSSK-PGRSANSERWVLHSTADYARTVIAQ 170 (266)
Q Consensus 95 p~l~~~l~~v~y~p~~~l~l~~~~~~-~~~p~~g~~~~~--~~~l~wi~~~ssK-pgr~~~~~~~vl~ss~~~s~~~~~~ 170 (266)
|.+.+.++.+.|.++.++++.|+++. ...+..++++.. +..+.++.+++.+ |++.|.+..++.+....|.......
T Consensus 283 ~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~ 362 (451)
T PRK11883 283 PPAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVD 362 (451)
T ss_pred hhHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhcc
Confidence 34566788999999999999999873 212344555542 2346677788888 6776655566777666665443322
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccCCccC--ee---ecCCCCeEEeeCCCCCCCh
Q 024514 171 TGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEER--CL---WDVKRRLAICGDFCVSPNV 245 (266)
Q Consensus 171 ~~~~~~~~~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~~~~~--~~---~~~~~~l~~~GDw~~g~~v 245 (266)
.+++++.+.+++.++++.+....|.+..++||++|+|.+..++... .+ ....++|++||||+.|.++
T Consensus 363 --------~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i 434 (451)
T PRK11883 363 --------ATDEELVAFVLADLSKVMGITGDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFEGVGL 434 (451)
T ss_pred --------CCHHHHHHHHHHHHHHHhCCCCCceEEEEeecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccCCccH
Confidence 1578899999999987654335688899999999999887764211 01 1114599999999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 024514 246 EGAILSGLDAASKLTE 261 (266)
Q Consensus 246 E~A~~SG~~~A~~l~~ 261 (266)
|+|++||..+|++|++
T Consensus 435 ~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 435 PDCIAQAKRAAARLLA 450 (451)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
No 6
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.33 E-value=3.5e-11 Score=111.49 Aligned_cols=149 Identities=18% Similarity=0.266 Sum_probs=99.9
Q ss_pred hHHHHhccCCCcceeeEeeccCCCCCCCCCcceEecCCCceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhcCCCC
Q 024514 96 DLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQK 175 (266)
Q Consensus 96 ~l~~~l~~v~y~p~~~l~l~~~~~~~~~p~~g~~~~~~~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~~~~ 175 (266)
...+.++++.|.+|+++++.|+++.. .+.+.+.+.+ ....|+...+.+++... ...++++. +..+.+.
T Consensus 263 ~~~~~l~~~~~~~~~~v~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~----- 330 (419)
T TIGR03467 263 DLGALLTALGYSPITTVHLRLDRAVR-LPAPMVGLVG-GLAQWLFDRGQLAGEPG-YLAVVISA----ARDLVDL----- 330 (419)
T ss_pred hHHHHHhhcCCcceEEEEEEeCCCcC-CCCCeeeecC-CceeEEEECCcCCCCCC-EEEEEEec----chhhccC-----
Confidence 34556788999999999999998852 2232222222 46788877776654321 22233333 2223232
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCC--CCCcEEeEeccCCCCCCcccCCc--cCeeecCCCCeEEeeCCCCCC---ChhHH
Q 024514 176 PSEATLKKVAEEMFQEFQGTGLSI--PLPIFRKAHRWGSAFPAASIAKE--ERCLWDVKRRLAICGDFCVSP---NVEGA 248 (266)
Q Consensus 176 ~~~~~~~~v~~~l~~~~~~l~~~l--~~p~~~~~hRW~~A~p~~~~~~~--~~~~~~~~~~l~~~GDw~~g~---~vE~A 248 (266)
+++++.+.+++.+.++.+.. ..|.+..+.||.++.+....++. .+.+..+.++|++||||+.++ ++|+|
T Consensus 331 ----~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA 406 (419)
T TIGR03467 331 ----PREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGA 406 (419)
T ss_pred ----CHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccCCCcchHHHH
Confidence 57888999999998875433 34667667777666655444432 233456678999999999874 89999
Q ss_pred HHHHHHHHHHHH
Q 024514 249 ILSGLDAASKLT 260 (266)
Q Consensus 249 ~~SG~~~A~~l~ 260 (266)
++||..+|++|+
T Consensus 407 ~~SG~~aA~~i~ 418 (419)
T TIGR03467 407 VRSGYQAAEAVL 418 (419)
T ss_pred HHHHHHHHHHHh
Confidence 999999999986
No 7
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.27 E-value=3.5e-11 Score=109.74 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=120.5
Q ss_pred ChhHHHHhccCCCcceeeEeeccCCCCCCCCCcce--Eec--CC---CceEEEEeCCCC-CCCCCCCCcEEEEeChHHHH
Q 024514 94 APDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGF--SFQ--DS---EVLSWAHCDSSK-PGRSANSERWVLHSTADYAR 165 (266)
Q Consensus 94 ~p~l~~~l~~v~y~p~~~l~l~~~~~~~~~p~~g~--~~~--~~---~~l~wi~~~ssK-pgr~~~~~~~vl~ss~~~s~ 165 (266)
.+.++.+|.+|+|.|+.+|.+.|+.+....|.+|| +++ .. +.|+ ++++|.. |.|++.+ .+++.....|+.
T Consensus 318 ~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG-~ifdS~~Fp~~~~s~-~vtvm~gg~~~~ 395 (491)
T KOG1276|consen 318 QNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLG-TIFDSMLFPDRSPSP-KVTVMMGGGGST 395 (491)
T ss_pred chhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeE-EEeecccCCCCCCCc-eEEEEecccccc
Confidence 45678899999999999999999986322577777 777 22 4677 5577777 8888743 567776667776
Q ss_pred HhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccCCccC------eeecC-CCCeEEeeC
Q 024514 166 TVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEER------CLWDV-KRRLAICGD 238 (266)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~~~~~------~~~~~-~~~l~~~GD 238 (266)
|..-. ..+.+++.+.+.++++..++.-.+|....+|-|+.++|+|.+||... .+.+. ..+|.+||.
T Consensus 396 -n~~~~------~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~ 468 (491)
T KOG1276|consen 396 -NTSLA------VPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGN 468 (491)
T ss_pred -cCcCC------CCCHHHHHHHHHHHHHHHhCCCCCcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeecc
Confidence 33221 11678888888999987654446799999999999999999998431 22232 359999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHH
Q 024514 239 FCVSPNVEGAILSGLDAASKLT 260 (266)
Q Consensus 239 w~~g~~vE~A~~SG~~~A~~l~ 260 (266)
|+.|+.|.+|+.||...|..++
T Consensus 469 ~y~Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 469 HYGGVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred ccCCCChhHHHHhhHHHHHhhc
Confidence 9999999999999999998764
No 8
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.20 E-value=2.2e-10 Score=107.12 Aligned_cols=154 Identities=15% Similarity=0.224 Sum_probs=114.4
Q ss_pred HHHhccCCCcceeeEeeccCCCCC--CCCCcceEecCCCc-eEEEEeCCCC-CCCCCCCCcE-EEEeChHHHHHhHhhcC
Q 024514 98 AVKLEEIPVNPCFALMLAFSEPLS--SIPVKGFSFQDSEV-LSWAHCDSSK-PGRSANSERW-VLHSTADYARTVIAQTG 172 (266)
Q Consensus 98 ~~~l~~v~y~p~~~l~l~~~~~~~--~~p~~g~~~~~~~~-l~wi~~~ssK-pgr~~~~~~~-vl~ss~~~s~~~~~~~~ 172 (266)
...+..+.|.+..++.++++.+.. ...-.|+++++..+ +..+.+.|.| |.+.|.+..+ .+-....+...-..
T Consensus 279 ~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~--- 355 (444)
T COG1232 279 SKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVST--- 355 (444)
T ss_pred hhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhc---
Confidence 455777889999999999998621 12345778877665 7778899999 9888744322 22222222221112
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccCCccC------eeecCCCCeEEeeCCCCCCChh
Q 024514 173 LQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEER------CLWDVKRRLAICGDFCVSPNVE 246 (266)
Q Consensus 173 ~~~~~~~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~~~~~------~~~~~~~~l~~~GDw~~g~~vE 246 (266)
..+|++.+..++++.+++.....|.+..+.||++++|+|.+||.+. .+-...++|.+.|-|+.|.++.
T Consensus 356 ------~~dee~~~~~l~~L~~~~~~~~~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~~ 429 (444)
T COG1232 356 ------MSDEELVAAVLDDLKKLGGINGDPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGLP 429 (444)
T ss_pred ------cCHHHHHHHHHHHHHHHcCcCcchhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCCch
Confidence 2578999999999999877667788999999999999999998532 1222338999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 024514 247 GAILSGLDAASKLT 260 (266)
Q Consensus 247 ~A~~SG~~~A~~l~ 260 (266)
+|+.+|..+|++|+
T Consensus 430 d~I~~g~~aa~~l~ 443 (444)
T COG1232 430 DCIAAGKEAAEQLL 443 (444)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999886
No 9
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.00 E-value=1.5e-08 Score=101.03 Aligned_cols=154 Identities=16% Similarity=0.220 Sum_probs=99.7
Q ss_pred hHHHHhccCCCcceeeEeeccCCCCCC--CCCcceEecCCCce-E-EEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhc
Q 024514 96 DLAVKLEEIPVNPCFALMLAFSEPLSS--IPVKGFSFQDSEVL-S-WAHCDSSKPGRSANSERWVLHSTADYARTVIAQT 171 (266)
Q Consensus 96 ~l~~~l~~v~y~p~~~l~l~~~~~~~~--~p~~g~~~~~~~~l-~-wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~ 171 (266)
...++++++.|.++..+++.|+++-.. ....|++..+.... . .+..+.+++ .+...++.+....++....+.
T Consensus 502 ~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~---~G~~vLvafv~G~~A~~~e~l- 577 (808)
T PLN02328 502 RKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSV---SGGPLLIALVAGDAAVKFETL- 577 (808)
T ss_pred HHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCCCC---CCCcEEEEEecChhhHHHhcC-
Confidence 345789999999999999999986321 12234333221111 1 122232221 123477888888877766444
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCC----CCCCCcEEeEeccC--------CCCCCcccCCcc---CeeecC--CCCeE
Q 024514 172 GLQKPSEATLKKVAEEMFQEFQGTGL----SIPLPIFRKAHRWG--------SAFPAASIAKEE---RCLWDV--KRRLA 234 (266)
Q Consensus 172 ~~~~~~~~~~~~v~~~l~~~~~~l~~----~l~~p~~~~~hRW~--------~A~p~~~~~~~~---~~~~~~--~~~l~ 234 (266)
+++++.+.+++.|+.+.+ ..+.|....+|||. |+.+.. |... ..+..+ ..+|+
T Consensus 578 --------sdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~p--G~~~~~~~~LaePv~~GRL~ 647 (808)
T PLN02328 578 --------SPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAV--GSSGDDYDILAESVGDGRVF 647 (808)
T ss_pred --------CHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCC--CCchhHHHHHhccCCCCCEE
Confidence 456777888888887643 23578889999999 555431 2111 122233 35899
Q ss_pred EeeCCCCC---CChhHHHHHHHHHHHHHHHHh
Q 024514 235 ICGDFCVS---PNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 235 ~~GDw~~g---~~vE~A~~SG~~~A~~l~~~l 263 (266)
+||+++.. +.||||++||+++|++|+..+
T Consensus 648 FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~ 679 (808)
T PLN02328 648 FAGEATNKQYPATMHGAFLSGMREAANILRVA 679 (808)
T ss_pred EEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHH
Confidence 99999864 599999999999999998865
No 10
>PLN02268 probable polyamine oxidase
Probab=99.00 E-value=1.8e-08 Score=94.51 Aligned_cols=151 Identities=18% Similarity=0.176 Sum_probs=100.4
Q ss_pred HHHhccCCCcceeeEeeccCCCC-CCCCCcceEecCCCceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhcCCCCC
Q 024514 98 AVKLEEIPVNPCFALMLAFSEPL-SSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKP 176 (266)
Q Consensus 98 ~~~l~~v~y~p~~~l~l~~~~~~-~~~p~~g~~~~~~~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~~~~~ 176 (266)
.+.++++.|.++..+.+.|+++. +...+.|.+.+......|..+.+..+| ...++.+....++....+.
T Consensus 269 ~~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~~~~~~~~~~~~~g----~~~l~~~~~g~~a~~~~~~------ 338 (435)
T PLN02268 269 EEAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPTSYGCSYFLNLHKATG----HPVLVYMPAGRLARDIEKL------ 338 (435)
T ss_pred HHHHHhCCccceeEEEEEeCCCCCCCCceeeccCCCCCCceEEEecccCCC----CCEEEEEeccHHHHHHHhC------
Confidence 57788899999999999999873 212344443332223334433222222 2366777777766654443
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccC--------CCCCCcccCCccC---eeecCCCCeEEeeCCCCC---
Q 024514 177 SEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWG--------SAFPAASIAKEER---CLWDVKRRLAICGDFCVS--- 242 (266)
Q Consensus 177 ~~~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~--------~A~p~~~~~~~~~---~~~~~~~~l~~~GDw~~g--- 242 (266)
+++++.+.+++.+.++.+....|....+|+|. |+.+. .|.... .+..+..+|++||+++..
T Consensus 339 ---~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~~--~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~ 413 (435)
T PLN02268 339 ---SDEAAANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDL--VGKPHDLYERLRAPVDNLFFAGEATSSDFP 413 (435)
T ss_pred ---CHHHHHHHHHHHHHHHcCCCCCccEEEecccCCCCCCCccCCCCC--CCCCHHHHHHHhCCCCCeEEeeccCCCccc
Confidence 56788888899988876554578888999998 44332 221111 233455689999999864
Q ss_pred CChhHHHHHHHHHHHHHHHHh
Q 024514 243 PNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 243 ~~vE~A~~SG~~~A~~l~~~l 263 (266)
+.||||+.||..+|++|+..|
T Consensus 414 g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 414 GSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred ccHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999998754
No 11
>PLN02529 lysine-specific histone demethylase 1
Probab=98.97 E-value=2e-08 Score=99.58 Aligned_cols=156 Identities=15% Similarity=0.211 Sum_probs=100.1
Q ss_pred HHHHhccCCCcceeeEeeccCCCCC--CCCCcceEecCC-CceEE-EEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhcC
Q 024514 97 LAVKLEEIPVNPCFALMLAFSEPLS--SIPVKGFSFQDS-EVLSW-AHCDSSKPGRSANSERWVLHSTADYARTVIAQTG 172 (266)
Q Consensus 97 l~~~l~~v~y~p~~~l~l~~~~~~~--~~p~~g~~~~~~-~~l~w-i~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~ 172 (266)
..++++.+.|.++..+++.|+++-. ..+..|++.... ..-.| +..+.+++ +++.+++......++......
T Consensus 423 K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~---~ggpvLvafv~G~~A~~le~l-- 497 (738)
T PLN02529 423 KLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTV---SGGPALVALVAGEAAQRFENT-- 497 (738)
T ss_pred HHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCCCC---CCCCEEEEEECchhhHHHhcC--
Confidence 3577899999999999999998731 122334433211 11122 22233221 123467777777776654443
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCC----CCCCCcEEeEeccC--------CCCCCccc-CCccCeeecC-CCCeEEeeC
Q 024514 173 LQKPSEATLKKVAEEMFQEFQGTGL----SIPLPIFRKAHRWG--------SAFPAASI-AKEERCLWDV-KRRLAICGD 238 (266)
Q Consensus 173 ~~~~~~~~~~~v~~~l~~~~~~l~~----~l~~p~~~~~hRW~--------~A~p~~~~-~~~~~~~~~~-~~~l~~~GD 238 (266)
+++++.+.+++.++.+.+ ..+.|....+|+|. |+.+.... +.....+..+ ..+|++||+
T Consensus 498 -------sdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGE 570 (738)
T PLN02529 498 -------DPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGE 570 (738)
T ss_pred -------CHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEH
Confidence 567788888888887643 23568888999999 66543111 1000122222 468999999
Q ss_pred CCCC---CChhHHHHHHHHHHHHHHHHhc
Q 024514 239 FCVS---PNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 239 w~~g---~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
++.. +.||||++||+.+|++|+..+.
T Consensus 571 aTs~~~pgtVeGAi~SG~RAA~eIl~~l~ 599 (738)
T PLN02529 571 ATTRQYPATMHGAFLSGLREASRILHVAR 599 (738)
T ss_pred HHhCCCCeEeHHHHHHHHHHHHHHHHHHh
Confidence 9865 5999999999999999998764
No 12
>PRK07233 hypothetical protein; Provisional
Probab=98.96 E-value=1.4e-08 Score=94.78 Aligned_cols=158 Identities=11% Similarity=0.044 Sum_probs=99.1
Q ss_pred HHHHhccCCCcceeeEeeccCCCCCCCCCcceEecCC-CceEEEEeCCCC-CCCCC-CCCcEEEEeChHHHHHhHhhcCC
Q 024514 97 LAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDS-EVLSWAHCDSSK-PGRSA-NSERWVLHSTADYARTVIAQTGL 173 (266)
Q Consensus 97 l~~~l~~v~y~p~~~l~l~~~~~~~~~p~~g~~~~~~-~~l~wi~~~ssK-pgr~~-~~~~~vl~ss~~~s~~~~~~~~~ 173 (266)
..+.++++.|.+++++.+.|+++... ++ -..+.+. .++.++...+.. |.+.+ +..+++++............
T Consensus 266 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--- 340 (434)
T PRK07233 266 VLARLRRIDYQGVVCMVLKLRRPLTD-YY-WLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQM--- 340 (434)
T ss_pred HHhhhcccCccceEEEEEEecCCCCC-Cc-eeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCChhhcC---
Confidence 44567888999999999999987531 11 1111221 233334444444 55442 22222232211111112222
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCC--CCCcEEeEeccCCCCCCcccCCcc--CeeecCCCCeEEeeCCCC---CCChh
Q 024514 174 QKPSEATLKKVAEEMFQEFQGTGLSI--PLPIFRKAHRWGSAFPAASIAKEE--RCLWDVKRRLAICGDFCV---SPNVE 246 (266)
Q Consensus 174 ~~~~~~~~~~v~~~l~~~~~~l~~~l--~~p~~~~~hRW~~A~p~~~~~~~~--~~~~~~~~~l~~~GDw~~---g~~vE 246 (266)
+++++.+.+++.+.++.+.+ ..+....++||++|.|.+..+... +.+..+.++|++|||+.. ++++|
T Consensus 341 ------~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ 414 (434)
T PRK07233 341 ------SDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSIN 414 (434)
T ss_pred ------CHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchh
Confidence 46788888999998876533 246778899999999987655321 223345689999999642 35899
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 024514 247 GAILSGLDAASKLTEILSC 265 (266)
Q Consensus 247 ~A~~SG~~~A~~l~~~l~~ 265 (266)
+|++||..+|++|+..+..
T Consensus 415 ~Ai~sG~~aA~~i~~~~~~ 433 (434)
T PRK07233 415 GSVRAGRRVAREILEDRRN 433 (434)
T ss_pred HHHHHHHHHHHHHhhhhcC
Confidence 9999999999999887653
No 13
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.84 E-value=3.1e-08 Score=90.86 Aligned_cols=154 Identities=23% Similarity=0.310 Sum_probs=100.2
Q ss_pred HHHHhccCCCcceeeEeeccCCCCCCC--CCcceEecCC-CceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhcCC
Q 024514 97 LAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQDS-EVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGL 173 (266)
Q Consensus 97 l~~~l~~v~y~p~~~l~l~~~~~~~~~--p~~g~~~~~~-~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~~ 173 (266)
..+.++.+.|.+...+.+.|+++.... ...++.+.+. ..+.++...+.++++ ++...++............+.
T Consensus 279 ~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~--- 354 (450)
T PF01593_consen 279 KRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGR-PGGGVLTSYVGGPDAPEWDDL--- 354 (450)
T ss_dssp HHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSC-TTSEEEEEEEEHHHHHHHTTS---
T ss_pred ccccccccccCcceeEEEeeecccccccccccceecccCccccccccccccCccc-ccCCcceeeeeccccchhccc---
Confidence 446678899999999999999975322 2556655443 356767666666776 433334444444433222222
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCC--CCCCCcEEeEeccCC-CCCCcccCCcc-C-------eeecCC-CCeEEeeCCCC
Q 024514 174 QKPSEATLKKVAEEMFQEFQGTGL--SIPLPIFRKAHRWGS-AFPAASIAKEE-R-------CLWDVK-RRLAICGDFCV 241 (266)
Q Consensus 174 ~~~~~~~~~~v~~~l~~~~~~l~~--~l~~p~~~~~hRW~~-A~p~~~~~~~~-~-------~~~~~~-~~l~~~GDw~~ 241 (266)
+.+++.+.+++.++++.+ ..+.|....+++|.. ..+.+...... . .+..+. ++|++||||+.
T Consensus 355 ------~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~ 428 (450)
T PF01593_consen 355 ------SDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTS 428 (450)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGS
T ss_pred ------chhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccC
Confidence 578888889998887654 344566677899988 44443322111 1 112333 69999999998
Q ss_pred CC---ChhHHHHHHHHHHHHHH
Q 024514 242 SP---NVEGAILSGLDAASKLT 260 (266)
Q Consensus 242 g~---~vE~A~~SG~~~A~~l~ 260 (266)
++ .+|+|+.||..+|++|+
T Consensus 429 ~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 429 PGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp SSSTTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHhC
Confidence 55 99999999999999986
No 14
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.57 E-value=3.8e-07 Score=86.88 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCC--CCcEEeEeccCCCCCCcccCCc--cCeeecCCCCeEEeeCCCCC---CChhHHHHHH
Q 024514 180 TLKKVAEEMFQEFQGTGLSIP--LPIFRKAHRWGSAFPAASIAKE--ERCLWDVKRRLAICGDFCVS---PNVEGAILSG 252 (266)
Q Consensus 180 ~~~~v~~~l~~~~~~l~~~l~--~p~~~~~hRW~~A~p~~~~~~~--~~~~~~~~~~l~~~GDw~~g---~~vE~A~~SG 252 (266)
+++++.+.+.++++++.+... .+.+.++-|...|.+....|.. .+....+.++|++||||... .++|+|++||
T Consensus 387 ~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG 466 (474)
T TIGR02732 387 SNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSG 466 (474)
T ss_pred CHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHHHHH
Confidence 567888888888887765322 3455567777777665444431 12234456799999999987 6999999999
Q ss_pred HHHHHHHH
Q 024514 253 LDAASKLT 260 (266)
Q Consensus 253 ~~~A~~l~ 260 (266)
..+|+.|+
T Consensus 467 ~~aA~~i~ 474 (474)
T TIGR02732 467 RQAAAAIL 474 (474)
T ss_pred HHHHHHhC
Confidence 99999873
No 15
>PLN02612 phytoene desaturase
Probab=98.56 E-value=8.1e-07 Score=86.47 Aligned_cols=159 Identities=15% Similarity=0.082 Sum_probs=88.6
Q ss_pred hHHHHhccCCCcceeeEeeccCCCCCCCCCcceEecCCCceEEEEeCCC-CCCCCCCCCcEEEEeChHHHHHhHhhcCCC
Q 024514 96 DLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSS-KPGRSANSERWVLHSTADYARTVIAQTGLQ 174 (266)
Q Consensus 96 ~l~~~l~~v~y~p~~~l~l~~~~~~~~~p~~g~~~~~~~~l~wi~~~ss-Kpgr~~~~~~~vl~ss~~~s~~~~~~~~~~ 174 (266)
.+.+.++++.|.|+.++.+.|+++.. .+.+++++.+.+.+.-...-|. ++...+.+..+ +.....-.....+.
T Consensus 379 ~~~~~l~~l~~~~v~~v~l~~dr~~~-~~~~~~~~~~~~~~~~~~d~S~~~~~~~~~~~~l-l~~~~~~a~~~~~~---- 452 (567)
T PLN02612 379 PYFKKLDKLVGVPVINVHIWFDRKLK-NTYDHLLFSRSPLLSVYADMSTTCKEYYDPNKSM-LELVFAPAEEWISR---- 452 (567)
T ss_pred HHHHHHHhcCCCCeEEEEEEECcccC-CCCCceeecCCCCceeehhhhhcchhhcCCCCeE-EEEEEEcChhhhcC----
Confidence 34556677889999999999999864 3455555443332221111121 22222212222 22221111112222
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCC-------CcEEeEeccCCCCCCcccCCc--cCeeecCCCCeEEeeCCCCC---
Q 024514 175 KPSEATLKKVAEEMFQEFQGTGLSIPL-------PIFRKAHRWGSAFPAASIAKE--ERCLWDVKRRLAICGDFCVS--- 242 (266)
Q Consensus 175 ~~~~~~~~~v~~~l~~~~~~l~~~l~~-------p~~~~~hRW~~A~p~~~~~~~--~~~~~~~~~~l~~~GDw~~g--- 242 (266)
+++++.+.++++++.+.+.... +....+.+..++......+.. .+.+..+..+|++||||+..
T Consensus 453 -----sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~ 527 (567)
T PLN02612 453 -----SDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYL 527 (567)
T ss_pred -----CHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCch
Confidence 5688888899999887653211 122233344444221111111 01223455789999999854
Q ss_pred CChhHHHHHHHHHHHHHHHHhcc
Q 024514 243 PNVEGAILSGLDAASKLTEILSC 265 (266)
Q Consensus 243 ~~vE~A~~SG~~~A~~l~~~l~~ 265 (266)
+++|+|++||..+|+.|++.+..
T Consensus 528 ~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 528 ASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999999987643
No 16
>PLN03000 amine oxidase
Probab=98.49 E-value=6.3e-06 Score=82.87 Aligned_cols=157 Identities=13% Similarity=0.199 Sum_probs=97.3
Q ss_pred HHHHhccCCCcceeeEeeccCCCCCC--CCCcceEecCC--CceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhcC
Q 024514 97 LAVKLEEIPVNPCFALMLAFSEPLSS--IPVKGFSFQDS--EVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTG 172 (266)
Q Consensus 97 l~~~l~~v~y~p~~~l~l~~~~~~~~--~p~~g~~~~~~--~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~ 172 (266)
..++++.+.|...--+.+.|+++-.. ....|+++.+. ....++..+.+++. +...++.....+.+.. ++..
T Consensus 447 K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~---G~pVLvafv~Gd~A~~-le~l- 521 (881)
T PLN03000 447 KLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVA---GGPLLIALVAGEAAHK-FETM- 521 (881)
T ss_pred HHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCCCC---CCcEEEEEecCchhHH-hhcC-
Confidence 45788999999999999999987321 23345554321 11233334443322 1234555555544433 3321
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCC----CCCCCcEEeEeccCC---CCCCcc---cCCccC---eeecC--CCCeEEee
Q 024514 173 LQKPSEATLKKVAEEMFQEFQGTGL----SIPLPIFRKAHRWGS---AFPAAS---IAKEER---CLWDV--KRRLAICG 237 (266)
Q Consensus 173 ~~~~~~~~~~~v~~~l~~~~~~l~~----~l~~p~~~~~hRW~~---A~p~~~---~~~~~~---~~~~~--~~~l~~~G 237 (266)
+++++.+.+++.|+.+.+ ..+.|....++||.. +.=.|. .|.... .+..+ ..+|+|||
T Consensus 522 -------SdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAG 594 (881)
T PLN03000 522 -------PPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAG 594 (881)
T ss_pred -------CHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEee
Confidence 567788888888887643 235788889999984 221111 111001 11222 35899999
Q ss_pred CCCCC---CChhHHHHHHHHHHHHHHHHhcc
Q 024514 238 DFCVS---PNVEGAILSGLDAASKLTEILSC 265 (266)
Q Consensus 238 Dw~~g---~~vE~A~~SG~~~A~~l~~~l~~ 265 (266)
+.+.. +.||||++||+++|++|+..+.|
T Consensus 595 EaTs~~~~GTVhGAieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 595 EATTRRYPATMHGAFVTGLREAANMAQSAKA 625 (881)
T ss_pred hHHhCCCCeeHHHHHHHHHHHHHHHHHHhhh
Confidence 98754 69999999999999999998765
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.38 E-value=7.1e-06 Score=77.48 Aligned_cols=150 Identities=16% Similarity=0.125 Sum_probs=87.6
Q ss_pred HHHHhccCCCcceeeEeeccCCCCCCCCCcceEecCCCceEEEEeCC-CC-CCCCCCCCcEEEEeChHHHHHhHhhcCCC
Q 024514 97 LAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDS-SK-PGRSANSERWVLHSTADYARTVIAQTGLQ 174 (266)
Q Consensus 97 l~~~l~~v~y~p~~~l~l~~~~~~~~~p~~g~~~~~~~~l~wi~~~s-sK-pgr~~~~~~~vl~ss~~~s~~~~~~~~~~ 174 (266)
+.+.++.++|.++..+.+.|+++.. ..+++++..++.+.-..+-+ .+ +.+.++...+.+..... ....+.
T Consensus 290 ~~~~~~~~~~~~~~~v~l~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~--~~~~~~---- 361 (453)
T TIGR02731 290 FFQKLNGLEGVPVINVHIWFDRKLT--TVDHLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPA--ADWIGR---- 361 (453)
T ss_pred HHHHhhcCCCCcEEEEEEEEccccC--CCCceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecCh--hhhhcC----
Confidence 4455677889999999999999864 23455555444332111112 11 23333222222222211 222222
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCC---CC---CcEEeEeccCCCCCCcccCCc--cCeeecCCCCeEEeeCCCC---CC
Q 024514 175 KPSEATLKKVAEEMFQEFQGTGLSI---PL---PIFRKAHRWGSAFPAASIAKE--ERCLWDVKRRLAICGDFCV---SP 243 (266)
Q Consensus 175 ~~~~~~~~~v~~~l~~~~~~l~~~l---~~---p~~~~~hRW~~A~p~~~~~~~--~~~~~~~~~~l~~~GDw~~---g~ 243 (266)
+++++.+.+++.+.++.+.. .. +...+..|.+|+.+....|.. .+.+..+..+|++||||.. .+
T Consensus 362 -----~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g 436 (453)
T TIGR02731 362 -----SDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLA 436 (453)
T ss_pred -----CHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCcccc
Confidence 57888888888888775421 12 233455577777543222211 1234455679999999984 35
Q ss_pred ChhHHHHHHHHHHHHH
Q 024514 244 NVEGAILSGLDAASKL 259 (266)
Q Consensus 244 ~vE~A~~SG~~~A~~l 259 (266)
.+|+|++||..+|++|
T Consensus 437 ~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 437 SMEGAVLSGKLCAQAI 452 (453)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999999999976
No 18
>PRK07208 hypothetical protein; Provisional
Probab=98.28 E-value=6e-06 Score=78.50 Aligned_cols=158 Identities=13% Similarity=0.025 Sum_probs=95.9
Q ss_pred hHHHHhccCCCcceeeEeeccCCCCCCCCCcceEecCCC-ceEEEEeCCCC-CCCCCCCCcEEEEeC--hHHHHHhHhhc
Q 024514 96 DLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSE-VLSWAHCDSSK-PGRSANSERWVLHST--ADYARTVIAQT 171 (266)
Q Consensus 96 ~l~~~l~~v~y~p~~~l~l~~~~~~~~~p~~g~~~~~~~-~l~wi~~~ssK-pgr~~~~~~~vl~ss--~~~s~~~~~~~ 171 (266)
...+.++.+.|.++.++.++|+++.. .+....++++.. .+.-+..-++- |.+.|.+...++... .......++.
T Consensus 292 ~~~~~~~~l~~~~~~~v~l~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~- 369 (479)
T PRK07208 292 EVRAAAAGLRYRDFITVGLLVKELNL-FPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNM- 369 (479)
T ss_pred HHHHHHhCCCcceeEEEEEEecCCCC-CCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccC-
Confidence 44556778899999999999998642 233222333211 12212111111 444443321222111 0001111222
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCC-CCCCcEEeEeccCCCCCCcccCCccCe-----eecCCCCeEEeeCCC--CCC
Q 024514 172 GLQKPSEATLKKVAEEMFQEFQGTGLS-IPLPIFRKAHRWGSAFPAASIAKEERC-----LWDVKRRLAICGDFC--VSP 243 (266)
Q Consensus 172 ~~~~~~~~~~~~v~~~l~~~~~~l~~~-l~~p~~~~~hRW~~A~p~~~~~~~~~~-----~~~~~~~l~~~GDw~--~g~ 243 (266)
+++++.+..++.+.+++.. -..|...+++||.+++|++..++.... +..+.++|+++|+.. .-.
T Consensus 370 --------~deel~~~~~~~L~~l~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~ 441 (479)
T PRK07208 370 --------SDEDLIALAIQELARLGLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYN 441 (479)
T ss_pred --------CHHHHHHHHHHHHHHcCCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccC
Confidence 4677888888888887431 234788899999999999988763321 234567999999853 236
Q ss_pred ChhHHHHHHHHHHHHHHHHh
Q 024514 244 NVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 244 ~vE~A~~SG~~~A~~l~~~l 263 (266)
.+|+|+.||+++|+.|+...
T Consensus 442 ~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 442 NQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred ChhHHHHHHHHHHHHHhcCC
Confidence 99999999999999987643
No 19
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.28 E-value=1.6e-05 Score=73.95 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=106.9
Q ss_pred ChhHHHHhccCCCcceeeEeeccCCCCCC-CC-CcceEecCCCceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhc
Q 024514 94 APDLAVKLEEIPVNPCFALMLAFSEPLSS-IP-VKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQT 171 (266)
Q Consensus 94 ~p~l~~~l~~v~y~p~~~l~l~~~~~~~~-~p-~~g~~~~~~~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~ 171 (266)
.+.+.+++..++|.++.-..+.|+++-.. .. +.|.-+.+.. +..|+.+|+ +.-.. ..||+++..|+..-....
T Consensus 273 ~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~-~~~i~~~s~-~~~~G---~gVl~g~~~~g~~A~~~~ 347 (450)
T COG1231 273 PAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLG-LGFISYPSA-PFADG---PGVLLGSYAFGDDALVID 347 (450)
T ss_pred CHHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCC-cceEecCcc-ccCCC---ceEEEeeeeccccceeEe
Confidence 44667888899999999999999998521 22 5555444544 777877777 44332 358888777776554332
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCC-C-CCCCcEEeEeccCCCCCCcc------cCCcc---CeeecCCCCeEEee-CC
Q 024514 172 GLQKPSEATLKKVAEEMFQEFQGTGL-S-IPLPIFRKAHRWGSAFPAAS------IAKEE---RCLWDVKRRLAICG-DF 239 (266)
Q Consensus 172 ~~~~~~~~~~~~v~~~l~~~~~~l~~-~-l~~p~~~~~hRW~~A~p~~~------~~~~~---~~~~~~~~~l~~~G-Dw 239 (266)
.+ +.++-.+.++..+..+.+ . ..+.++...++|....-... .+... +.+..+..+|.++| -+
T Consensus 348 ~~------~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEh 421 (450)
T COG1231 348 AL------PEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEH 421 (450)
T ss_pred cC------CHHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecc
Confidence 22 456667777777777655 2 22345557888875432211 11101 12335778999999 44
Q ss_pred --CCCCChhHHHHHHHHHHHHHHHHhcc
Q 024514 240 --CVSPNVEGAILSGLDAASKLTEILSC 265 (266)
Q Consensus 240 --~~g~~vE~A~~SG~~~A~~l~~~l~~ 265 (266)
..++-+|||++||+.+|.+|...+++
T Consensus 422 as~~~Gw~eGAi~Sg~~AA~ei~~~l~s 449 (450)
T COG1231 422 ASEFGGWLEGAIRSGQRAAAEIHALLSS 449 (450)
T ss_pred cccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 46789999999999999999988875
No 20
>PLN02487 zeta-carotene desaturase
Probab=98.17 E-value=1.7e-05 Score=77.15 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCC--CCcEEeEeccCCCCCCcccCCc--cCeeecCCCCeEEeeCCCCC---CChhHHHHHH
Q 024514 180 TLKKVAEEMFQEFQGTGLSIP--LPIFRKAHRWGSAFPAASIAKE--ERCLWDVKRRLAICGDFCVS---PNVEGAILSG 252 (266)
Q Consensus 180 ~~~~v~~~l~~~~~~l~~~l~--~p~~~~~hRW~~A~p~~~~~~~--~~~~~~~~~~l~~~GDw~~g---~~vE~A~~SG 252 (266)
+++++.+.+.+++.++.+... .+.+.++-|...|.....+|.. .+....+-++|++||||... -++|+|++||
T Consensus 463 ~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG 542 (569)
T PLN02487 463 SNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSG 542 (569)
T ss_pred CHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHH
Confidence 578888888888887764322 3556666666666544333321 02223455799999999865 4999999999
Q ss_pred HHHHHHHHHHh
Q 024514 253 LDAASKLTEIL 263 (266)
Q Consensus 253 ~~~A~~l~~~l 263 (266)
..+|+.|++.-
T Consensus 543 ~~AA~~i~~~~ 553 (569)
T PLN02487 543 RQAAAYICEAG 553 (569)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 21
>PLN02676 polyamine oxidase
Probab=97.63 E-value=0.0015 Score=62.52 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=90.9
Q ss_pred HHHhccCCCcceeeEeeccCCCCCCC--CCcceEecCCC---ceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhcC
Q 024514 98 AVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQDSE---VLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTG 172 (266)
Q Consensus 98 ~~~l~~v~y~p~~~l~l~~~~~~~~~--p~~g~~~~~~~---~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~ 172 (266)
.++++.+.|....-+.+.|+++-... ...++...+.. ...|...+...|+ ..+++.......+. .++..
T Consensus 303 ~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~g~~a~-~~~~~- 376 (487)
T PLN02676 303 IEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPG----SNVLFVTVTDEESR-RIEQQ- 376 (487)
T ss_pred HHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCC----CCEEEEEechHHHH-HHHhC-
Confidence 46778899999999999999863210 11111111111 0123222322232 23555555544443 33321
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCC-CCCCCcEEeEeccCC---CCCCc---ccCCccC---eeecCCCCeEEeeCCCC-
Q 024514 173 LQKPSEATLKKVAEEMFQEFQGTGL-SIPLPIFRKAHRWGS---AFPAA---SIAKEER---CLWDVKRRLAICGDFCV- 241 (266)
Q Consensus 173 ~~~~~~~~~~~v~~~l~~~~~~l~~-~l~~p~~~~~hRW~~---A~p~~---~~~~~~~---~~~~~~~~l~~~GDw~~- 241 (266)
++++..+.+++.|..+.+ ..+.|.....|.|.. +.-.| +.|.... .+..+..+|++||+.+.
T Consensus 377 -------s~e~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~ 449 (487)
T PLN02676 377 -------PDSETKAEIMEVLRKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSE 449 (487)
T ss_pred -------CHHHHHHHHHHHHHHHhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEecccccc
Confidence 456777788888887643 345678888999964 22111 1121111 12245569999999775
Q ss_pred --CCChhHHHHHHHHHHHHHHHHhc
Q 024514 242 --SPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 242 --g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
.+.+|||+.||..+|++|+..++
T Consensus 450 ~~~g~~eGA~~SG~RaA~~I~~~l~ 474 (487)
T PLN02676 450 KYNGYVHGAYLAGIDTANDLLECIK 474 (487)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhc
Confidence 36899999999999999998774
No 22
>PLN02976 amine oxidase
Probab=97.52 E-value=0.0038 Score=66.04 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=92.4
Q ss_pred HHhccCCCcceeeEeeccCCCCCC--CCCcceEecCC--CceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhcCCC
Q 024514 99 VKLEEIPVNPCFALMLAFSEPLSS--IPVKGFSFQDS--EVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQ 174 (266)
Q Consensus 99 ~~l~~v~y~p~~~l~l~~~~~~~~--~p~~g~~~~~~--~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~~~ 174 (266)
++++.+.|-..--+.+.|+++-.. ..+.|....+. ....|..++..++. +...++.......+. .++..
T Consensus 1015 aAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~ps---G~pVLVafv~G~aAr-eiEsL--- 1087 (1713)
T PLN02976 1015 SSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTV---GAPVLIALVVGKAAI-DGQSM--- 1087 (1713)
T ss_pred HHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCC---CCCEEEEEeccHhHH-HHhhC---
Confidence 557888888888889999986321 12333322211 11234556655442 123444444444443 23321
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCC--CCCCcEEeEeccC---CCCCCccc---CCccC---eeecC-CCCeEEeeCCCC-
Q 024514 175 KPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWG---SAFPAASI---AKEER---CLWDV-KRRLAICGDFCV- 241 (266)
Q Consensus 175 ~~~~~~~~~v~~~l~~~~~~l~~~--l~~p~~~~~hRW~---~A~p~~~~---~~~~~---~~~~~-~~~l~~~GDw~~- 241 (266)
+.+++.+.+++.|..+++. .+.|....+++|. |+.-.|.. |.... .+..+ ..+|+|||..+.
T Consensus 1088 -----SDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~ 1162 (1713)
T PLN02976 1088 -----SSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCK 1162 (1713)
T ss_pred -----CHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhC
Confidence 4677778888888877542 3578888999996 44333321 11010 11222 236999999653
Q ss_pred --CCChhHHHHHHHHHHHHHHHHhc
Q 024514 242 --SPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 242 --g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
.+.|+||+.||..+|++|+..+.
T Consensus 1163 ~~pGTVHGAIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976 1163 EHPDTVGGAMMSGLREAVRIIDILN 1187 (1713)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999998763
No 23
>PLN02568 polyamine oxidase
Probab=97.35 E-value=0.0053 Score=59.56 Aligned_cols=159 Identities=14% Similarity=0.179 Sum_probs=88.0
Q ss_pred HHHhccCCCcceeeEeeccCCCCCCC-----CCc--ceEecCCC-------ceEEEEeCCCC-CCCCCCCCcEEEEeChH
Q 024514 98 AVKLEEIPVNPCFALMLAFSEPLSSI-----PVK--GFSFQDSE-------VLSWAHCDSSK-PGRSANSERWVLHSTAD 162 (266)
Q Consensus 98 ~~~l~~v~y~p~~~l~l~~~~~~~~~-----p~~--g~~~~~~~-------~l~wi~~~ssK-pgr~~~~~~~vl~ss~~ 162 (266)
.++++.+.|...--+.+.|+++-... .+. .++..+++ ...|+-..... |. ..+...++.....+
T Consensus 317 ~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vL~~~~~G~ 395 (539)
T PLN02568 317 TDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPI-HKNSSVLLSWFAGK 395 (539)
T ss_pred HHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhcccccccc-CCCCCEEEEEeccH
Confidence 56788889988888999999863100 011 11111100 01122100000 11 01123555555555
Q ss_pred HHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCC-----------------------CCCCcEEeEeccCC---CCCC
Q 024514 163 YARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLS-----------------------IPLPIFRKAHRWGS---AFPA 216 (266)
Q Consensus 163 ~s~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~l~~~-----------------------l~~p~~~~~hRW~~---A~p~ 216 (266)
.+. +++.. +++++.+.+++.|..+.+. .+.|....+++|.. +.=.
T Consensus 396 ~A~-~~e~l--------~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~Gs 466 (539)
T PLN02568 396 EAL-ELEKL--------SDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGS 466 (539)
T ss_pred HHH-HHHcC--------CHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCc
Confidence 444 33331 4667777778887765431 12577888999973 2211
Q ss_pred cc---cCCccC---eeecC-------------CCCeEEeeCCCCC---CChhHHHHHHHHHHHHHHHHhccC
Q 024514 217 AS---IAKEER---CLWDV-------------KRRLAICGDFCVS---PNVEGAILSGLDAASKLTEILSCL 266 (266)
Q Consensus 217 ~~---~~~~~~---~~~~~-------------~~~l~~~GDw~~g---~~vE~A~~SG~~~A~~l~~~l~~~ 266 (266)
|. +|.... .+..+ ..+|++||..+.. +.|+||++||+++|++|+....|.
T Consensus 467 Ys~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~~~ 538 (539)
T PLN02568 467 YSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYKCV 538 (539)
T ss_pred cCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhccC
Confidence 11 111000 11111 1279999987654 589999999999999999988874
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.20 E-value=0.018 Score=55.08 Aligned_cols=155 Identities=14% Similarity=0.192 Sum_probs=80.4
Q ss_pred hHHHHhccCCCcc-eeeEeeccCCCC-CC--CCCcceEecCCCceEEEEeCCCCCCCCCCCC-cEEEEeCh---HHH---
Q 024514 96 DLAVKLEEIPVNP-CFALMLAFSEPL-SS--IPVKGFSFQDSEVLSWAHCDSSKPGRSANSE-RWVLHSTA---DYA--- 164 (266)
Q Consensus 96 ~l~~~l~~v~y~p-~~~l~l~~~~~~-~~--~p~~g~~~~~~~~l~wi~~~ssKpgr~~~~~-~~vl~ss~---~~s--- 164 (266)
.+.+.+++++|++ .+++++++++.. +. .+...+.+.... --++...+..|+++|.+. .+++.... .|.
T Consensus 307 ~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~ 385 (492)
T TIGR02733 307 GYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQG-SLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLD 385 (492)
T ss_pred HHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCc-eEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCC
Confidence 4556677888887 447889998742 10 111112222222 223444333477877443 23233322 221
Q ss_pred HHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCCCC-CcEEe------EeccCCCCCCcccCCc---------c-Ceee
Q 024514 165 RTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPL-PIFRK------AHRWGSAFPAASIAKE---------E-RCLW 227 (266)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~l~~~l~~-p~~~~------~hRW~~A~p~~~~~~~---------~-~~~~ 227 (266)
...++. .++++++.+++.+++..+++.. .++.. ..|+ +..+.....+. . ....
T Consensus 386 ~~~y~~---------~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~-~~~~~G~~~G~~~~~~q~~~~~~~~~ 455 (492)
T TIGR02733 386 EEDYTA---------KKKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERW-TGRPQGIVGGLGQRPSTFGPFGLSSR 455 (492)
T ss_pred HHHHHH---------HHHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHH-hCCCCcEECCCCcCccccCCcCCCCC
Confidence 111121 3567888888888765443222 11111 1222 11111110000 0 0002
Q ss_pred cCCCCeEEeeCCCC-CCChhHHHHHHHHHHHHHHH
Q 024514 228 DVKRRLAICGDFCV-SPNVEGAILSGLDAASKLTE 261 (266)
Q Consensus 228 ~~~~~l~~~GDw~~-g~~vE~A~~SG~~~A~~l~~ 261 (266)
.+-++|++||+|+. |++|.+|+.||..+|++|+.
T Consensus 456 t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 456 TPVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhh
Confidence 34579999999986 46999999999999999975
No 25
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.07 E-value=0.14 Score=49.00 Aligned_cols=186 Identities=11% Similarity=0.109 Sum_probs=94.7
Q ss_pred cEEeCCCchHHHHHHhcCCCCCCChhHHHHhccCCCc-ceeeEeeccCCCCC-C-CCCcceEec------CCCceEEEEe
Q 024514 71 KYVGVPGMNSICKALCHQPDLTFAPDLAVKLEEIPVN-PCFALMLAFSEPLS-S-IPVKGFSFQ------DSEVLSWAHC 141 (266)
Q Consensus 71 ~yvg~pgm~~l~~~l~~~~~~~~~p~l~~~l~~v~y~-p~~~l~l~~~~~~~-~-~p~~g~~~~------~~~~l~wi~~ 141 (266)
+.|...+.....+.|+.+-.+ .+.....++++.++ +.++++++++.... . ....-+++. ..+..-++..
T Consensus 277 ~vV~a~~~~~~~~~Ll~~~~~--~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ 354 (493)
T TIGR02730 277 RIVSNATRWDTFGKLLKAENL--PKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSI 354 (493)
T ss_pred EEEECCChHHHHHHhCCcccc--chhhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEe
Confidence 455556666666656543111 12334445566655 58888999887431 0 010001111 1122335666
Q ss_pred CCCC-CCCCCCCCcEEEEeC-hHHHHHhHhhcCCCCC-ChhhHHHHHHHHHHHHHhcCCCCCC-CcEEe------EeccC
Q 024514 142 DSSK-PGRSANSERWVLHST-ADYARTVIAQTGLQKP-SEATLKKVAEEMFQEFQGTGLSIPL-PIFRK------AHRWG 211 (266)
Q Consensus 142 ~ssK-pgr~~~~~~~vl~ss-~~~s~~~~~~~~~~~~-~~~~~~~v~~~l~~~~~~l~~~l~~-p~~~~------~hRW~ 211 (266)
-|.+ |.++|.+ +-++++. +.+-.. +.. +.+. -++..+++.+.+++.+++..+.+.. .++.. ..|+
T Consensus 355 ps~~dps~aP~G-~~~i~~~~~~~~~~-w~~--~~~~~y~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~- 429 (493)
T TIGR02730 355 PTLLDPSLAPEG-HHIIHTFTPSSMED-WQG--LSPKDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRF- 429 (493)
T ss_pred CCCCCCCCCcCC-cEEEEEecCCChhh-ccC--CCcHHHHHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHH-
Confidence 6666 8888854 2344432 322211 100 0000 0113567888888888765433221 11111 2232
Q ss_pred CCCCCcccCCcc----------CeeecCCCCeEEeeCCCC-CCChhHHHHHHHHHHHHHHHHh
Q 024514 212 SAFPAASIAKEE----------RCLWDVKRRLAICGDFCV-SPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 212 ~A~p~~~~~~~~----------~~~~~~~~~l~~~GDw~~-g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.+.+....|... +....+-++|++||+|.. |++|.+|+.||..+|++|+..+
T Consensus 430 ~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 430 LGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred hCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 222222222100 011234569999999986 5799999999999999998754
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=96.29 E-value=0.062 Score=51.43 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=30.9
Q ss_pred CCCCeEEeeCCCC-CCChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCV-SPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~-g~~vE~A~~SG~~~A~~l~~~l 263 (266)
+-++|++||+|+. |++|.+|+.||..+|++|+..+
T Consensus 457 ~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~ 492 (502)
T TIGR02734 457 KIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDL 492 (502)
T ss_pred CCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 4569999999987 5699999999999999998764
No 27
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.87 E-value=3.2 Score=40.07 Aligned_cols=155 Identities=19% Similarity=0.259 Sum_probs=88.8
Q ss_pred HHHHhccCCCcceeeEeeccCCCCC--CCCCcceEecCCCceEEEE-eCCCCCCCCCCCCcEEEEeChHHHHHhHhhcCC
Q 024514 97 LAVKLEEIPVNPCFALMLAFSEPLS--SIPVKGFSFQDSEVLSWAH-CDSSKPGRSANSERWVLHSTADYARTVIAQTGL 173 (266)
Q Consensus 97 l~~~l~~v~y~p~~~l~l~~~~~~~--~~p~~g~~~~~~~~l~wi~-~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~~ 173 (266)
..++++.+..-+.--+++.|+..-. ...+.|. ++......++. +.+.+|- ...+.+++....+=++.....
T Consensus 287 k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~-~~~~~~~~~~~~f~~~~~~--~~~~~l~~~~~~~~a~~~~~~--- 360 (501)
T KOG0029|consen 287 KQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGI-VPETSVLRGLFTFYDCKPV--AGHPVLMSVVVGEAAERVETL--- 360 (501)
T ss_pred HHHHHHhcCCCceeEEEEEeccccCCCCcCeEEE-ccccccccchhhhhhcCcc--CCCCeEEEEehhhhhHHHhcC---
Confidence 3577888888888889999987632 1233332 22222333311 2333321 112323333332222222222
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCC--CCCCCcEEeEeccCCCCCCcc------cCCcc-Ce--ee-cCCCCeEEeeCCCC
Q 024514 174 QKPSEATLKKVAEEMFQEFQGTGL--SIPLPIFRKAHRWGSAFPAAS------IAKEE-RC--LW-DVKRRLAICGDFCV 241 (266)
Q Consensus 174 ~~~~~~~~~~v~~~l~~~~~~l~~--~l~~p~~~~~hRW~~A~p~~~------~~~~~-~~--~~-~~~~~l~~~GDw~~ 241 (266)
.++++.+..+..++.+++ ..+.|....+.||.--.-... .+... .+ +. ....+++++|....
T Consensus 361 ------~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~ 434 (501)
T KOG0029|consen 361 ------SDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATS 434 (501)
T ss_pred ------CHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhc
Confidence 466777777777776554 456788888999986433211 11110 11 11 22335999999763
Q ss_pred ---CCChhHHHHHHHHHHHHHHHHh
Q 024514 242 ---SPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 242 ---g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.+.++||+.||..+|..|+..+
T Consensus 435 ~~~~~tm~GA~~sG~~~a~~i~~~~ 459 (501)
T KOG0029|consen 435 RKYPGTMHGAYLSGLRAASDILDSL 459 (501)
T ss_pred ccCCCchHHHHHhhHHHHHHHHHHH
Confidence 4799999999999999998765
No 28
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=86.18 E-value=2.3 Score=40.46 Aligned_cols=84 Identities=21% Similarity=0.254 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHhcC--CCCCCCcEEeEeccCCC--------C-CCcccCCc-----c--Ce-eecCCCCeEEeeCCC
Q 024514 180 TLKKVAEEMFQEFQGTG--LSIPLPIFRKAHRWGSA--------F-PAASIAKE-----E--RC-LWDVKRRLAICGDFC 240 (266)
Q Consensus 180 ~~~~v~~~l~~~~~~l~--~~l~~p~~~~~hRW~~A--------~-p~~~~~~~-----~--~~-~~~~~~~l~~~GDw~ 240 (266)
++++|++.+...|+..+ ..+|.|.-..-+.|.-. . +++..+.. . +. ..+..+.|.+||-..
T Consensus 386 sdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaT 465 (498)
T KOG0685|consen 386 SDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEAT 465 (498)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccc
Confidence 67899999999998754 35677877777888642 1 11111110 0 11 124567899999988
Q ss_pred CC---CChhHHHHHHHHHHHHHHHHh
Q 024514 241 VS---PNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 241 ~g---~~vE~A~~SG~~~A~~l~~~l 263 (266)
.. +++.||++||++-|++|++..
T Consensus 466 hr~~YsTthGA~~SG~REA~RL~~~y 491 (498)
T KOG0685|consen 466 HRTFYSTTHGAVLSGWREADRLLEHY 491 (498)
T ss_pred cccceehhhhhHHhhHHHHHHHHHHH
Confidence 65 799999999999999999844
No 29
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=74.74 E-value=27 Score=33.37 Aligned_cols=123 Identities=19% Similarity=0.106 Sum_probs=65.7
Q ss_pred ceEEEEeCCCC-CCCCCCCCcEEEEeChHHHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCCCC-CcEEe-----E
Q 024514 135 VLSWAHCDSSK-PGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPL-PIFRK-----A 207 (266)
Q Consensus 135 ~l~wi~~~ssK-pgr~~~~~~~vl~ss~~~s~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~l~~~l~~-p~~~~-----~ 207 (266)
++-.++.-|++ |-.+|.+ +=|||--..+....++.. ..+.-+...++.++.+++.+..+.+.+.. .+... -
T Consensus 399 pvI~~siPS~lDptlappg-~Hvl~lf~~~t~~~w~g~-~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t 476 (561)
T KOG4254|consen 399 PVIELSIPSSLDPTLAPPG-KHVLHLFTQYTPEEWEGG-LKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPT 476 (561)
T ss_pred CeEEEecccccCCCcCCCC-ceEEEEeccCCccccccC-CcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCch
Confidence 34457888888 7776643 446665555444333321 10012335677888888888766543221 11111 2
Q ss_pred eccCCCCCCcccCC-----ccC----e------eecCCCCeEEeeCC-CCCCChhHHHHHHHHHHHHHHH
Q 024514 208 HRWGSAFPAASIAK-----EER----C------LWDVKRRLAICGDF-CVSPNVEGAILSGLDAASKLTE 261 (266)
Q Consensus 208 hRW~~A~p~~~~~~-----~~~----~------~~~~~~~l~~~GDw-~~g~~vE~A~~SG~~~A~~l~~ 261 (266)
|+--.++|-...++ +.. + ...+-++|++|||- +-|++|-+|- |..+|.....
T Consensus 477 ~qr~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGgGV~a~a--G~~~A~~a~~ 544 (561)
T KOG4254|consen 477 HQRFLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGGGVMAAA--GRLAAHSAIL 544 (561)
T ss_pred hhHHhcCCCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCCCCccccc--hhHHHHHHhh
Confidence 23333444333332 111 1 13566799999995 5567777666 7777665543
No 30
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=72.10 E-value=2.8 Score=28.69 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=18.9
Q ss_pred cccccCCCeeee--CChhHHHHHHHH
Q 024514 14 MLFDHGAPFFTV--TNNDVLALVREW 37 (266)
Q Consensus 14 ~~~DhGaqyfta--~~~~f~~~~~~~ 37 (266)
..+|+|+.+|.. .++.+.+++++|
T Consensus 43 ~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 43 YRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred EEEeeccEEEeCCCCchHHHHHHcCC
Confidence 689999999998 458888888764
No 31
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=69.17 E-value=6.3 Score=36.62 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=28.7
Q ss_pred cCCCCeEEeeC------CCCCCChhHHHHHHHHHHHHHHHHh
Q 024514 228 DVKRRLAICGD------FCVSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 228 ~~~~~l~~~GD------w~~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
...++|++||- +|+|=.+.-||.||..+++.+...|
T Consensus 334 k~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 334 KARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred ccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 34679999993 2344499999999999999887765
No 32
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=66.96 E-value=13 Score=35.80 Aligned_cols=37 Identities=35% Similarity=0.442 Sum_probs=31.7
Q ss_pred ecCCCCeEEeeCCCCC---CChhHHHHHHHHHHHHHHHHh
Q 024514 227 WDVKRRLAICGDFCVS---PNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 227 ~~~~~~l~~~GDw~~g---~~vE~A~~SG~~~A~~l~~~l 263 (266)
..+.+++.++|||..- +++|+|..||+.+|+.+.+.+
T Consensus 424 ~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~ 463 (485)
T COG3349 424 KTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNL 463 (485)
T ss_pred CCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhh
Confidence 3457799999999854 699999999999999998765
No 33
>PRK13984 putative oxidoreductase; Provisional
Probab=62.22 E-value=9 Score=37.70 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=31.7
Q ss_pred CCCeEEeeCCCCCCChhHHHHHHHHHHHHHHHHhc
Q 024514 230 KRRLAICGDFCVSPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 230 ~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
.++|+++||...+..+-.|+..|..+|+.|..+|.
T Consensus 568 ~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 568 IPWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCCEEEecCcCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 56999999999998888999999999999998874
No 34
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=61.17 E-value=11 Score=37.35 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=31.3
Q ss_pred CCCeEEeeCCCCCCC-hhHHHHHHHHHHHHHHHHhcc
Q 024514 230 KRRLAICGDFCVSPN-VEGAILSGLDAASKLTEILSC 265 (266)
Q Consensus 230 ~~~l~~~GDw~~g~~-vE~A~~SG~~~A~~l~~~l~~ 265 (266)
.++|+++||-..|.. +-.|+..|..+|+.|..+|.+
T Consensus 600 ~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~ 636 (639)
T PRK12809 600 LKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDT 636 (639)
T ss_pred CCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999887764 689999999999999998854
No 35
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=59.05 E-value=12 Score=35.31 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=29.3
Q ss_pred CCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFCVSP-NVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~l 263 (266)
.++|+++||...|+ .+-.|+..|..+|..|..+|
T Consensus 415 ~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 415 IPGVFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 47899999998776 57899999999999997764
No 36
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=58.63 E-value=15 Score=36.65 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=31.0
Q ss_pred CCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|+++||...|. .+-.|+..|..+|..|..+|+
T Consensus 616 s~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 616 SNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred CCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 347899999998776 468999999999999998875
No 37
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=56.83 E-value=17 Score=33.60 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=30.3
Q ss_pred CCCeEEeeCCCC------CCChhHHHHHHHHHHHHHHHHhc
Q 024514 230 KRRLAICGDFCV------SPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 230 ~~~l~~~GDw~~------g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++.++||.-. |.++--|+.||..||+.|.+.+.
T Consensus 268 ~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~ 308 (396)
T COG0644 268 GDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALE 308 (396)
T ss_pred cCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHH
Confidence 358999999765 78999999999999999998764
No 38
>PRK12831 putative oxidoreductase; Provisional
Probab=56.35 E-value=15 Score=35.02 Aligned_cols=35 Identities=31% Similarity=0.276 Sum_probs=30.6
Q ss_pred CCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHHhc
Q 024514 230 KRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 230 ~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~l~ 264 (266)
.++|+++||...|+ .+-.|+..|..+|..|..+|.
T Consensus 426 ~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 426 KEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999987765 688999999999999998874
No 39
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=55.85 E-value=13 Score=34.82 Aligned_cols=35 Identities=26% Similarity=0.181 Sum_probs=28.9
Q ss_pred CCCCeEEee---C---CCCCCChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICG---D---FCVSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~G---D---w~~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.-++|++|| | |++|=.+..||-||..+++.+.+.+
T Consensus 367 ~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 367 KVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred cCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 457999999 3 4455699999999999999988765
No 40
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=54.76 E-value=19 Score=34.20 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=30.7
Q ss_pred CCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|+++||...|. .+-.|+..|..+|..|..+|.
T Consensus 429 s~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 429 SNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred CCCCEEEccccCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 357999999988776 578899999999999988773
No 41
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=53.02 E-value=21 Score=32.38 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=30.3
Q ss_pred CCCCeEEeeCCCCC-CChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCVS-PNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~g-~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|++|||...+ ..+..|+..|..+|..|.+.|.
T Consensus 314 ~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 314 SREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 34799999998775 4788899999999999988774
No 42
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=51.17 E-value=18 Score=34.20 Aligned_cols=35 Identities=29% Similarity=0.275 Sum_probs=30.1
Q ss_pred CCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHHhc
Q 024514 230 KRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 230 ~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~l~ 264 (266)
.++|+++||...|. .+-.|+..|..+|+.|...+.
T Consensus 417 ~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 417 LPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred CCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999988764 688999999999999988774
No 43
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=51.00 E-value=21 Score=33.55 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=28.5
Q ss_pred CCCeEEeeCCC--------CCCChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFC--------VSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~--------~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++.++||.- .|.+|.-|+.||..+|+.+.+.+
T Consensus 294 ~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~ 335 (428)
T PRK10157 294 GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAM 335 (428)
T ss_pred cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 36899999963 34689999999999999998765
No 44
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=50.30 E-value=26 Score=33.33 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=30.1
Q ss_pred CCCeEEeeCCCCCCC-hhHHHHHHHHHHHHHHHHhc
Q 024514 230 KRRLAICGDFCVSPN-VEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 230 ~~~l~~~GDw~~g~~-vE~A~~SG~~~A~~l~~~l~ 264 (266)
.++|+++||...+.. +-.|+..|..+|..|..+|.
T Consensus 431 ~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 431 NPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 568999999887764 58899999999999988764
No 45
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=49.63 E-value=22 Score=37.23 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=30.6
Q ss_pred CCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|+++||...|. .+-.|+..|..+|+.|..+|
T Consensus 591 s~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L 626 (944)
T PRK12779 591 SIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEI 626 (944)
T ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 346899999998876 68999999999999998876
No 46
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=47.33 E-value=29 Score=36.63 Aligned_cols=36 Identities=22% Similarity=0.143 Sum_probs=31.1
Q ss_pred CCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|+++||...|+ .+-.|+..|..+|..|..+|.
T Consensus 719 s~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~ 755 (1006)
T PRK12775 719 NLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLR 755 (1006)
T ss_pred CCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 457999999998776 588999999999999988763
No 47
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.88 E-value=1.1e+02 Score=29.19 Aligned_cols=33 Identities=18% Similarity=0.050 Sum_probs=26.3
Q ss_pred CCCCeEEeeCCCC-CCChhHHHHHHHHHHHHHHH
Q 024514 229 VKRRLAICGDFCV-SPNVEGAILSGLDAASKLTE 261 (266)
Q Consensus 229 ~~~~l~~~GDw~~-g~~vE~A~~SG~~~A~~l~~ 261 (266)
+-.+|++||++.. |+++.++.-|+.+.+..+..
T Consensus 448 ~i~~LYl~Ga~t~PG~Gv~g~~g~~~a~~~~~~~ 481 (487)
T COG1233 448 PIKGLYLVGASTHPGGGVPGVPGSAAAVALLIDL 481 (487)
T ss_pred CcCceEEeCCcCCCCCCcchhhhhHHHHHhhhcc
Confidence 4579999999986 67899998888887766544
No 48
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=45.67 E-value=33 Score=32.90 Aligned_cols=36 Identities=22% Similarity=0.122 Sum_probs=30.3
Q ss_pred CCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|+++||-..|. .+-.|+..|..+|..|..+|.
T Consensus 443 s~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 443 SIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred CCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999987765 577899999999999988873
No 49
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=45.12 E-value=28 Score=35.38 Aligned_cols=35 Identities=29% Similarity=0.214 Sum_probs=30.8
Q ss_pred CCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHHhc
Q 024514 230 KRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 230 ~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~l~ 264 (266)
.++|+++||-..|+ .+-.|+..|..+|..|..+|+
T Consensus 715 ~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 715 IPGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999988775 688999999999999998875
No 50
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=44.08 E-value=37 Score=31.46 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=28.3
Q ss_pred CCeEEeeCCC------CCCChhHHHHHHHHHHHHHHHHh
Q 024514 231 RRLAICGDFC------VSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 231 ~~l~~~GDw~------~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.++.++||.- .|.++.-|++||..+|+.+.+.+
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~ 308 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEES 308 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 5799999963 56799999999999999998754
No 51
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=43.97 E-value=30 Score=33.79 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=30.6
Q ss_pred CCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|+++||...|+ .+-.|+..|..+|..|...|.
T Consensus 408 s~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 408 GRPGVFAGGDMVPGPRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred CCCCEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHc
Confidence 357899999988765 688999999999999988764
No 52
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=42.86 E-value=27 Score=30.25 Aligned_cols=35 Identities=20% Similarity=0.004 Sum_probs=28.6
Q ss_pred CCCCeEEeeCCCC--CCChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCV--SPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~--g~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|+++||... ...+..|+..|..+|..|...+
T Consensus 264 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 264 SVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred CCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 4578999999775 3568899999999999987653
No 53
>PRK10015 oxidoreductase; Provisional
Probab=38.76 E-value=43 Score=31.50 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=27.6
Q ss_pred CCCeEEeeCCC--------CCCChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFC--------VSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~--------~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++.++||.- .|.++.-|+.||..+|+.+.+.+
T Consensus 294 ~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~ 335 (429)
T PRK10015 294 NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAK 335 (429)
T ss_pred cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHH
Confidence 35899999952 24578889999999999998765
No 54
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=36.20 E-value=49 Score=34.81 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=29.9
Q ss_pred CCCeEEeeCCCCCCChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFCVSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.++|++|||-.....+..|+.+|..+|..++..+
T Consensus 438 v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~~~l 471 (985)
T TIGR01372 438 VQGCILAGAANGLFGLAAALADGAAAGAAAARAA 471 (985)
T ss_pred CCCeEEeeccCCccCHHHHHHHHHHHHHHHHHHc
Confidence 4799999998877899999999999999887665
No 55
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=36.11 E-value=52 Score=31.26 Aligned_cols=33 Identities=27% Similarity=0.207 Sum_probs=28.2
Q ss_pred CCeEEeeCCC------CCCChhHHHHHHHHHHHHHHHHh
Q 024514 231 RRLAICGDFC------VSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 231 ~~l~~~GDw~------~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.++.++||.- .|.++.-|++||..+|+.+.+.+
T Consensus 309 ~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~ 347 (450)
T PLN00093 309 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGS 347 (450)
T ss_pred CCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 4799999963 56799999999999999998754
No 56
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=35.98 E-value=36 Score=19.69 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=16.3
Q ss_pred CCeeeeCChhHHHHHHHHH
Q 024514 20 APFFTVTNNDVLALVREWE 38 (266)
Q Consensus 20 aqyfta~~~~f~~~~~~~~ 38 (266)
..|+.+....|+++|++|-
T Consensus 5 p~vi~~d~~~Fr~lVQ~LT 23 (31)
T PF05678_consen 5 PTVIHTDPSNFRALVQRLT 23 (31)
T ss_pred CEEEEeCHHHHHHHHHHhH
Confidence 5688888899999999975
No 57
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=35.74 E-value=55 Score=32.70 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=30.2
Q ss_pred CCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|+++||-..|+ .+-.|+..|..+|..|...|.
T Consensus 465 s~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 465 SVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred CCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHc
Confidence 347999999988765 568999999999999988763
No 58
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=34.15 E-value=68 Score=29.44 Aligned_cols=34 Identities=29% Similarity=0.268 Sum_probs=28.5
Q ss_pred CCCeEEeeCCC------CCCChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~------~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++.++||.- .|.++--|++||..+|+.|.+.+
T Consensus 263 ~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l 302 (388)
T TIGR02023 263 FGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYL 302 (388)
T ss_pred CCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 35799999964 46799999999999999998765
No 59
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=32.77 E-value=1.8e+02 Score=24.78 Aligned_cols=30 Identities=23% Similarity=0.249 Sum_probs=25.2
Q ss_pred CCCeEEeeCCC------CCCChhHHHHHHHHHHHHH
Q 024514 230 KRRLAICGDFC------VSPNVEGAILSGLDAASKL 259 (266)
Q Consensus 230 ~~~l~~~GDw~------~g~~vE~A~~SG~~~A~~l 259 (266)
..++.+.||.. .|.++.-|++||..||+.|
T Consensus 260 ~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 260 RGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred cCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 57899999974 4569999999999999854
No 60
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=32.35 E-value=43 Score=30.46 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=23.7
Q ss_pred CCCeeeeCC-hhHHHHHHHHHhCCcccc
Q 024514 19 GAPFFTVTN-NDVLALVREWESGGLVAE 45 (266)
Q Consensus 19 Gaqyfta~~-~~f~~~~~~~~~~g~v~~ 45 (266)
|--||.|++ ++|.+.++.+++.|++..
T Consensus 163 gRGyFiA~s~eef~ek~e~l~~~gvi~~ 190 (361)
T COG1759 163 GRGYFIASSPEEFYEKAERLLKRGVITE 190 (361)
T ss_pred CceEEEEcCHHHHHHHHHHHHHcCCcch
Confidence 667999998 579999999999999954
No 61
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=31.70 E-value=35 Score=32.09 Aligned_cols=30 Identities=23% Similarity=0.152 Sum_probs=22.5
Q ss_pred cCCCCeEEeeCCC------CCCChhHHHHHHHHHHH
Q 024514 228 DVKRRLAICGDFC------VSPNVEGAILSGLDAAS 257 (266)
Q Consensus 228 ~~~~~l~~~GDw~------~g~~vE~A~~SG~~~A~ 257 (266)
..-++|++||--+ +|=.+.-||.||..+|+
T Consensus 373 k~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 373 KLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 3457999999443 33489999999999986
No 62
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=31.30 E-value=25 Score=25.22 Aligned_cols=27 Identities=15% Similarity=0.465 Sum_probs=22.1
Q ss_pred eeeCChhHHHHHH-HHHhCCcccccccc
Q 024514 23 FTVTNNDVLALVR-EWESGGLVAEWKVN 49 (266)
Q Consensus 23 fta~~~~f~~~~~-~~~~~g~v~~W~~~ 49 (266)
||-.+++|++.++ +...-=||.+|..+
T Consensus 11 fTe~D~ey~~~~~~~~~~PPIV~~W~~r 38 (81)
T PF15320_consen 11 FTEDDEEYMEYCKRPFPPPPIVEPWNSR 38 (81)
T ss_pred ccccCHHHHHHHhCCCCCCCEecCcccC
Confidence 8999999999997 45556789999763
No 63
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=29.99 E-value=60 Score=34.29 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=28.1
Q ss_pred CCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHH
Q 024514 230 KRRLAICGDFCVSP-NVEGAILSGLDAASKLTEI 262 (266)
Q Consensus 230 ~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~ 262 (266)
.++|+++||-..|+ .+..|+..|..+|..|+..
T Consensus 805 ~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 805 ITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred CCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 46999999987664 6899999999999999753
No 64
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=28.73 E-value=42 Score=31.19 Aligned_cols=28 Identities=25% Similarity=0.167 Sum_probs=22.2
Q ss_pred CCCCeEEeeCC------CCCCChhHHHHHHHHHH
Q 024514 229 VKRRLAICGDF------CVSPNVEGAILSGLDAA 256 (266)
Q Consensus 229 ~~~~l~~~GDw------~~g~~vE~A~~SG~~~A 256 (266)
..++|++||.- |+|=.+.-||.||..++
T Consensus 366 ~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 366 LVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 34799999943 34448999999999886
No 65
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=27.65 E-value=4.5e+02 Score=23.58 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=26.3
Q ss_pred CCCeEEeeCCC------CCCChhHHHHHHHHHHHHHHHH
Q 024514 230 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTEI 262 (266)
Q Consensus 230 ~~~l~~~GDw~------~g~~vE~A~~SG~~~A~~l~~~ 262 (266)
..++.+.||.. .|-++.-|+.++..||+.|...
T Consensus 275 ~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~ 313 (382)
T TIGR01984 275 HPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDA 313 (382)
T ss_pred cCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHh
Confidence 36899999984 4558888999988888887653
No 66
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=26.80 E-value=2.2e+02 Score=28.37 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.7
Q ss_pred EEeCCCchHHHHHHhc
Q 024514 72 YVGVPGMNSICKALCH 87 (266)
Q Consensus 72 yvg~pgm~~l~~~l~~ 87 (266)
-||-.|.+|.+|..+.
T Consensus 202 lVGaDGa~S~VR~~lg 217 (634)
T PRK08294 202 VVGCDGARSRVRKAIG 217 (634)
T ss_pred EEECCCCchHHHHhcC
Confidence 4899999999998774
No 67
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=26.32 E-value=87 Score=33.15 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=29.6
Q ss_pred CCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|+++||...|+ .+-.|+..|..+|+.|....
T Consensus 806 s~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 806 SLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred CCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence 357999999987664 78999999999999998754
No 68
>PRK11445 putative oxidoreductase; Provisional
Probab=24.96 E-value=1.1e+02 Score=27.62 Aligned_cols=34 Identities=15% Similarity=0.030 Sum_probs=28.5
Q ss_pred CCCeEEeeCCC------CCCChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~------~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++.+.||.. .|.++.-|+.||..+|+.|.+..
T Consensus 263 ~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~ 302 (351)
T PRK11445 263 KDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP 302 (351)
T ss_pred CCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc
Confidence 46899999975 45799999999999999997643
No 69
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=24.65 E-value=1.1e+02 Score=28.78 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=27.6
Q ss_pred CCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHH
Q 024514 229 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 261 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~ 261 (266)
..++|+++||.+.+. -..-|...|..+|+.|..
T Consensus 294 ~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 294 NVPGIYALGDVVGKVELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhc
Confidence 357899999988764 578899999999999874
No 70
>PRK09126 hypothetical protein; Provisional
Probab=24.14 E-value=89 Score=28.45 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=27.2
Q ss_pred CCCeEEeeCCCC------CCChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFCV------SPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~~------g~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++.++||..+ |-++.-|+.+|..+|+.|...+
T Consensus 279 ~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~ 318 (392)
T PRK09126 279 AKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAA 318 (392)
T ss_pred hcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHH
Confidence 368999999853 4588999999999998886543
No 71
>PLN02852 ferredoxin-NADP+ reductase
Probab=23.45 E-value=70 Score=30.90 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=28.2
Q ss_pred CCCeEEeeCCCCCC--ChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFCVSP--NVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~~g~--~vE~A~~SG~~~A~~l~~~l 263 (266)
.++||+|||...|+ -|-.++..|..+|+.|...+
T Consensus 386 ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 386 EPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred CCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHH
Confidence 47999999998886 47888888888888888765
No 72
>PRK06116 glutathione reductase; Validated
Probab=23.31 E-value=1.2e+02 Score=28.56 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=27.4
Q ss_pred CCCCeEEeeCCCCC-CChhHHHHHHHHHHHHHHH
Q 024514 229 VKRRLAICGDFCVS-PNVEGAILSGLDAASKLTE 261 (266)
Q Consensus 229 ~~~~l~~~GDw~~g-~~vE~A~~SG~~~A~~l~~ 261 (266)
..++|+++||...+ .-...|+..|..+|+.|..
T Consensus 294 s~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 294 NVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhC
Confidence 35799999997654 4678999999999999875
No 73
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=23.30 E-value=85 Score=30.60 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=28.5
Q ss_pred CCCCeEEeeCCCCC--CChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~g--~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|+++||-+.+ ..+..|+..|..+|..|..++
T Consensus 272 s~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l 308 (555)
T TIGR03143 272 NVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYV 308 (555)
T ss_pred CCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHH
Confidence 35789999997643 358889999999999998766
No 74
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=22.65 E-value=1.1e+02 Score=27.47 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=27.0
Q ss_pred CCCeEEeeCCC------CCCChhHHHHHHHHHHHHHHHH
Q 024514 230 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTEI 262 (266)
Q Consensus 230 ~~~l~~~GDw~------~g~~vE~A~~SG~~~A~~l~~~ 262 (266)
..++.+.||.. .|.++.-|+..+..+|+.|...
T Consensus 275 ~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~ 313 (385)
T TIGR01988 275 APRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDA 313 (385)
T ss_pred cCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHH
Confidence 36899999985 3568999999999999888754
No 75
>PRK10262 thioredoxin reductase; Provisional
Probab=22.14 E-value=60 Score=28.86 Aligned_cols=37 Identities=16% Similarity=0.017 Sum_probs=28.7
Q ss_pred cCCCCeEEeeCCCCCC--ChhHHHHHHHHHHHHHHHHhc
Q 024514 228 DVKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 228 ~~~~~l~~~GDw~~g~--~vE~A~~SG~~~A~~l~~~l~ 264 (266)
...++|+++||-..++ .+--|+-.|..+|..+..++.
T Consensus 277 t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~ 315 (321)
T PRK10262 277 TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLD 315 (321)
T ss_pred cCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHH
Confidence 4567999999987543 455588999999999888764
No 76
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=21.61 E-value=1.5e+02 Score=27.61 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=28.2
Q ss_pred CCCCeEEeeCCCC------CCChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCV------SPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~------g~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|+++||-.. ......|...|..+|+.|...+
T Consensus 307 ~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 307 PIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred CCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 4578999999764 2366789999999999998765
No 77
>PRK06996 hypothetical protein; Provisional
Probab=21.24 E-value=6.1e+02 Score=23.15 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=25.7
Q ss_pred CCCeEEeeCCCCC------CChhHHHHHHHHHHHHHHH
Q 024514 230 KRRLAICGDFCVS------PNVEGAILSGLDAASKLTE 261 (266)
Q Consensus 230 ~~~l~~~GDw~~g------~~vE~A~~SG~~~A~~l~~ 261 (266)
..++.+.||..+. -+++-|+..+..||+.|..
T Consensus 290 ~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~ 327 (398)
T PRK06996 290 NGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD 327 (398)
T ss_pred cCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh
Confidence 3589999998653 3888899999999988753
No 78
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=21.06 E-value=87 Score=27.47 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.4
Q ss_pred CCeEEeeCCCC------CCChhHHHHHHHHHHHHHHHHh
Q 024514 231 RRLAICGDFCV------SPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 231 ~~l~~~GDw~~------g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.++.++||..+ |-++.-|+.++..||+.|...+
T Consensus 291 grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~ 329 (356)
T PF01494_consen 291 GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAAL 329 (356)
T ss_dssp TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHh
Confidence 48999999863 4489999999999999887654
No 79
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=20.76 E-value=48 Score=31.97 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCCCeEEeeCCCCCC--ChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~--~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|+++||-...+ .+..|+..|..+|..+..++.
T Consensus 476 s~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~ 513 (515)
T TIGR03140 476 SVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred CCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHh
Confidence 357899999987653 578899999999999888763
No 80
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=20.05 E-value=3.6e+02 Score=25.73 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=28.6
Q ss_pred cCCCCeEEeeCCCCCCChhHHHHHHHHHHHHHHHHh
Q 024514 228 DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 228 ~~~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
...++|++||.-.+-.+-+-|+.||+.++..+...+
T Consensus 328 k~~~~l~~AGqi~g~~Gy~ea~a~G~~Ag~n~~~~~ 363 (436)
T PRK05335 328 KKRPNLFFAGQITGVEGYVESAASGLLAGINAARLA 363 (436)
T ss_pred cCCCCEEeeeeecCchHHHHHHHHHHHHHHHHHHHh
Confidence 456899999998866677889999998887766544
Done!