Query 024514
Match_columns 266
No_of_seqs 147 out of 518
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 09:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qj4_A Renalase; FAD/NAD(P)-bi 100.0 1.3E-35 4.5E-40 267.3 20.0 241 1-263 43-342 (342)
2 1yvv_A Amine oxidase, flavin-c 100.0 4.8E-27 1.6E-31 209.7 22.6 234 14-264 49-328 (336)
3 3kkj_A Amine oxidase, flavin-c 99.7 3.3E-16 1.1E-20 131.5 22.5 235 14-265 49-329 (336)
4 3nks_A Protoporphyrinogen oxid 99.6 6.9E-16 2.3E-20 144.0 11.1 162 95-262 300-473 (477)
5 3i6d_A Protoporphyrinogen oxid 99.5 1.4E-14 5E-19 134.2 7.9 158 97-263 299-468 (470)
6 3lov_A Protoporphyrinogen oxid 99.4 1.1E-13 3.8E-18 129.1 7.5 156 99-264 300-466 (475)
7 2ivd_A PPO, PPOX, protoporphyr 99.3 2E-12 7E-17 120.5 9.1 159 97-264 306-474 (478)
8 3ka7_A Oxidoreductase; structu 99.3 1.3E-10 4.4E-15 106.4 18.4 175 71-261 243-425 (425)
9 3nrn_A Uncharacterized protein 99.1 9.6E-10 3.3E-14 100.9 12.8 141 97-259 257-403 (421)
10 1sez_A Protoporphyrinogen oxid 98.9 2.9E-10 1E-14 106.6 3.3 154 101-264 326-494 (504)
11 2yg5_A Putrescine oxidase; oxi 98.9 1.8E-08 6.3E-13 93.0 13.1 157 96-264 281-452 (453)
12 1s3e_A Amine oxidase [flavin-c 98.7 1.9E-07 6.5E-12 88.0 15.1 156 96-264 281-455 (520)
13 4dsg_A UDP-galactopyranose mut 98.7 5.4E-09 1.8E-13 98.2 4.0 154 95-260 284-452 (484)
14 2vvm_A Monoamine oxidase N; FA 98.6 9.5E-08 3.3E-12 89.3 7.7 150 96-264 325-486 (495)
15 1b37_A Protein (polyamine oxid 98.5 1.8E-06 6.1E-11 80.3 14.6 154 97-263 286-458 (472)
16 2jae_A L-amino acid oxidase; o 98.5 5.9E-07 2E-11 83.8 9.9 157 95-264 306-486 (489)
17 4gut_A Lysine-specific histone 98.3 7.5E-06 2.6E-10 81.1 13.7 154 96-261 600-775 (776)
18 4gde_A UDP-galactopyranose mut 98.1 9.7E-07 3.3E-11 82.4 3.8 82 180-261 386-477 (513)
19 2z3y_A Lysine-specific histone 98.1 8.2E-05 2.8E-09 72.4 16.2 153 97-264 476-659 (662)
20 2iid_A L-amino-acid oxidase; f 98.0 1.5E-05 5.1E-10 74.3 9.2 152 96-263 311-484 (498)
21 2xag_A Lysine-specific histone 98.0 9.3E-05 3.2E-09 74.0 15.1 151 97-263 647-829 (852)
22 4dgk_A Phytoene dehydrogenase; 97.7 6.9E-05 2.4E-09 69.7 7.7 35 229-263 456-491 (501)
23 2e1m_C L-glutamate oxidase; L- 97.6 6.1E-05 2.1E-09 61.4 4.7 82 181-263 56-152 (181)
24 1rsg_A FMS1 protein; FAD bindi 96.8 0.028 9.5E-07 52.5 14.8 36 229-264 470-508 (516)
25 2b9w_A Putative aminooxidase; 95.8 0.0028 9.5E-08 57.4 1.9 79 180-260 340-423 (424)
26 3k7m_X 6-hydroxy-L-nicotine ox 95.0 0.046 1.6E-06 49.3 7.0 71 190-261 342-424 (431)
27 2bi7_A UDP-galactopyranose mut 90.6 0.16 5.4E-06 45.6 3.5 34 230-263 335-370 (384)
28 3fpz_A Thiazole biosynthetic e 89.4 0.13 4.5E-06 44.8 1.8 38 228-265 281-326 (326)
29 1i8t_A UDP-galactopyranose mut 89.2 0.32 1.1E-05 43.3 4.3 32 230-261 332-365 (367)
30 1v0j_A UDP-galactopyranose mut 88.7 0.21 7.1E-06 45.0 2.7 33 231-263 353-387 (399)
31 3ayj_A Pro-enzyme of L-phenyla 78.1 1.9 6.4E-05 42.2 4.4 36 229-264 643-680 (721)
32 4gcm_A TRXR, thioredoxin reduc 69.6 3.6 0.00012 34.9 3.7 38 228-265 268-307 (312)
33 2cul_A Glucose-inhibited divis 67.9 4.7 0.00016 32.9 4.0 35 229-263 197-231 (232)
34 4a5l_A Thioredoxin reductase; 66.7 6.2 0.00021 33.2 4.6 38 228-265 274-313 (314)
35 3fbs_A Oxidoreductase; structu 65.9 6 0.00021 32.8 4.4 35 229-263 256-291 (297)
36 3oz2_A Digeranylgeranylglycero 63.6 6.6 0.00023 33.9 4.3 34 230-263 276-315 (397)
37 1fl2_A Alkyl hydroperoxide red 63.1 8 0.00027 32.4 4.7 35 229-263 268-304 (310)
38 3itj_A Thioredoxin reductase 1 62.8 8.6 0.00029 32.5 4.8 37 228-264 297-335 (338)
39 3f8d_A Thioredoxin reductase ( 62.0 8.8 0.0003 32.1 4.7 36 229-264 278-317 (323)
40 2gqf_A Hypothetical protein HI 61.5 4.1 0.00014 36.5 2.6 33 229-261 362-400 (401)
41 2q0l_A TRXR, thioredoxin reduc 61.2 9.8 0.00033 31.9 4.9 37 229-265 272-310 (311)
42 3cty_A Thioredoxin reductase; 59.2 11 0.00036 31.9 4.7 37 228-264 278-316 (319)
43 3r9u_A Thioredoxin reductase; 59.0 9.1 0.00031 32.0 4.2 36 229-264 275-312 (315)
44 2bcg_G Secretory pathway GDP d 58.5 8.8 0.0003 34.8 4.3 33 229-261 407-439 (453)
45 1trb_A Thioredoxin reductase; 57.7 10 0.00034 31.9 4.3 36 229-264 277-314 (320)
46 1vdc_A NTR, NADPH dependent th 57.0 10 0.00036 32.1 4.3 35 229-263 286-322 (333)
47 2ywl_A Thioredoxin reductase r 56.4 13 0.00045 28.4 4.5 35 229-263 134-170 (180)
48 2vdc_G Glutamate synthase [NAD 53.9 12 0.00039 34.2 4.3 35 229-263 408-443 (456)
49 2a87_A TRXR, TR, thioredoxin r 53.2 15 0.00051 31.3 4.7 36 228-263 278-315 (335)
50 2q7v_A Thioredoxin reductase; 50.9 19 0.00064 30.4 4.9 35 229-263 275-311 (325)
51 3lzw_A Ferredoxin--NADP reduct 50.0 15 0.0005 30.9 4.1 36 229-264 276-315 (332)
52 4a9w_A Monooxygenase; baeyer-v 49.2 14 0.00047 31.3 3.8 39 226-264 310-352 (357)
53 4fk1_A Putative thioredoxin re 44.3 11 0.00039 31.7 2.4 37 228-264 262-300 (304)
54 3v76_A Flavoprotein; structura 41.0 9.8 0.00033 34.3 1.6 30 229-258 381-416 (417)
55 1hyu_A AHPF, alkyl hydroperoxi 39.6 27 0.00094 32.1 4.5 34 230-263 480-515 (521)
56 3nlc_A Uncharacterized protein 35.9 22 0.00075 33.3 3.2 81 181-264 456-543 (549)
57 2zbw_A Thioredoxin reductase; 35.1 39 0.0014 28.3 4.5 35 229-263 278-316 (335)
58 3ab1_A Ferredoxin--NADP reduct 30.7 46 0.0016 28.4 4.3 36 229-264 289-328 (360)
59 1y56_A Hypothetical protein PH 30.3 52 0.0018 30.0 4.7 34 230-263 343-376 (493)
60 3k30_A Histamine dehydrogenase 30.2 19 0.00064 34.6 1.7 34 230-263 641-674 (690)
61 1rp0_A ARA6, thiazole biosynth 30.2 29 0.001 29.0 2.8 34 231-264 234-275 (284)
62 2i0z_A NAD(FAD)-utilizing dehy 29.4 32 0.0011 30.9 3.0 35 229-263 403-443 (447)
63 3atr_A Conserved archaeal prot 29.2 52 0.0018 29.4 4.4 33 231-263 282-320 (453)
64 2gmh_A Electron transfer flavo 28.6 51 0.0017 30.9 4.4 33 231-263 347-385 (584)
65 3vrd_B FCCB subunit, flavocyto 28.3 49 0.0017 28.8 4.0 36 228-263 284-323 (401)
66 3h28_A Sulfide-quinone reducta 28.2 63 0.0022 28.6 4.8 36 229-264 285-333 (430)
67 1cjc_A Protein (adrenodoxin re 27.8 26 0.00089 31.8 2.1 34 230-263 359-394 (460)
68 3h8l_A NADH oxidase; membrane 26.9 58 0.002 28.5 4.2 35 229-263 298-335 (409)
69 3sx6_A Sulfide-quinone reducta 26.5 63 0.0022 28.7 4.5 35 229-263 296-343 (437)
70 3ic9_A Dihydrolipoamide dehydr 25.9 58 0.002 29.6 4.2 33 229-261 304-337 (492)
71 2gag_A Heterotetrameric sarcos 25.9 56 0.0019 32.8 4.3 36 229-264 409-444 (965)
72 4b2v_A S64; toxin, ICK; NMR {S 25.8 21 0.00071 19.2 0.6 7 237-243 17-23 (32)
73 1lqt_A FPRA; NADP+ derivative, 24.8 30 0.001 31.3 2.0 35 229-263 350-386 (456)
74 1dxl_A Dihydrolipoamide dehydr 23.4 67 0.0023 28.7 4.0 33 229-261 308-341 (470)
75 1ryi_A Glycine oxidase; flavop 23.2 61 0.0021 27.7 3.6 76 182-262 285-362 (382)
76 1gte_A Dihydropyrimidine dehyd 22.8 65 0.0022 32.5 4.1 34 230-263 473-507 (1025)
77 1o94_A Tmadh, trimethylamine d 22.6 30 0.001 33.4 1.6 34 230-263 666-699 (729)
78 3klj_A NAD(FAD)-dependent dehy 22.3 49 0.0017 29.0 2.9 34 228-261 255-293 (385)
79 2a8x_A Dihydrolipoyl dehydroge 22.3 69 0.0023 28.7 3.9 33 229-261 300-333 (464)
80 3cp8_A TRNA uridine 5-carboxym 21.7 64 0.0022 30.9 3.6 35 229-263 377-411 (641)
81 1v59_A Dihydrolipoamide dehydr 20.7 91 0.0031 27.9 4.4 33 229-261 316-349 (478)
82 3l8k_A Dihydrolipoyl dehydroge 20.7 90 0.0031 27.9 4.3 34 229-262 299-333 (466)
83 3nix_A Flavoprotein/dehydrogen 20.2 79 0.0027 27.4 3.7 33 231-263 288-326 (421)
No 1
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=267.32 Aligned_cols=241 Identities=20% Similarity=0.278 Sum_probs=193.6
Q ss_pred CCccccccCCCCccccccCCCeeeeCCh---hHHHHHHHHHhCCccccccccceeeecCCceeeecccCCCCccEEeCCC
Q 024514 1 MSQRRETSEDGNEMLFDHGAPFFTVTNN---DVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPG 77 (266)
Q Consensus 1 mstrr~~~~~~~~~~~DhGaqyfta~~~---~f~~~~~~~~~~g~v~~W~~~~~~~~~~~~~~~~~~~~~~~~~yvg~pg 77 (266)
|+|++. +.+....+|||++||+++++ .|.++++.|.+.|++.+|........ ..+...+|+..+|
T Consensus 43 ~~~~~~--~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~g 110 (342)
T 3qj4_A 43 MTTACS--PHNPQCTADLGAQYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMV----------MKEGDCNFVAPQG 110 (342)
T ss_dssp GCEEEC--SSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHHTTSCEECCSCEETCC----------C--CCEEEECTTC
T ss_pred eeeeec--CCCCCceEecCCceEEcCchHHHHHHHHHHHHHhCCCeecCchhhccee----------ccCCccceecCCC
Confidence 345554 33344679999999999987 88899999999999999987543211 1234678999999
Q ss_pred chHHHHHHhc--CC------------------------------C-----C------CCC--------hhHHHHhccCCC
Q 024514 78 MNSICKALCH--QP------------------------------D-----L------TFA--------PDLAVKLEEIPV 106 (266)
Q Consensus 78 m~~l~~~l~~--~~------------------------------~-----~------~~~--------p~l~~~l~~v~y 106 (266)
|+.+.+.|++ +. | + .+. +...+.+++++|
T Consensus 111 ~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l~~~~~~~l~~~~~ 190 (342)
T 3qj4_A 111 ISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLISECQRQQLEAVSY 190 (342)
T ss_dssp TTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHSCHHHHHHHHTCCB
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHHHHhcccccccCHHHHHHHhcCCc
Confidence 9999999987 43 0 0 011 134678999999
Q ss_pred cceeeEeeccCCC--CCCCCCcceEecCCCceEEEEeCCCCCCCC--CCCCcEEEEeChHHHHHhHhhcCCCCCChhhHH
Q 024514 107 NPCFALMLAFSEP--LSSIPVKGFSFQDSEVLSWAHCDSSKPGRS--ANSERWVLHSTADYARTVIAQTGLQKPSEATLK 182 (266)
Q Consensus 107 ~p~~~l~l~~~~~--~~~~p~~g~~~~~~~~l~wi~~~ssKpgr~--~~~~~~vl~ss~~~s~~~~~~~~~~~~~~~~~~ 182 (266)
.||++|+++|+++ ++ .|++|+++++++.++|++++|+||+|. +++.+||+|++..|+.++++. +++
T Consensus 191 ~~~~~v~l~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~k~~r~~~~~~~~~v~~~~~~~~~~~~~~---------~~~ 260 (342)
T 3qj4_A 191 SSRYALGLFYEAGTKID-VPWAGQYITSNPCIRFVSIDNKKRNIESSEIGPSLVIHTTVPFGVTYLEH---------SIE 260 (342)
T ss_dssp CCEEEEEEECSSCC--C-CSCSEEECSSCSSEEEEEEHHHHTTCCCC-CCCEEEEEECHHHHHHTTTS---------CHH
T ss_pred cccEEEEEEECCCCccC-CceeeEEccCCcceEEEEccccCCCCCCCCCCceEEEECCHHHHHHhhcC---------CHH
Confidence 9999999999975 33 678999887766799999999999976 234689999999999998876 679
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccCCccCeee-cCCCCeEEeeCCCCCCChhHHHHHHHHHHHHHHH
Q 024514 183 KVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLW-DVKRRLAICGDFCVSPNVEGAILSGLDAASKLTE 261 (266)
Q Consensus 183 ~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~~~~~~~~-~~~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~ 261 (266)
++.+.++++|+++++..+.|++.++|||+||+|++.+.....++. +..++|++||||+.|++||+||+||.++|++|+.
T Consensus 261 ~~~~~~~~~l~~~~g~~~~p~~~~v~rW~~a~p~~~~~~~~~~~~~~~~~~l~laGd~~~g~~v~~ai~sg~~aa~~i~~ 340 (342)
T 3qj4_A 261 DVQELVFQQLENILPGLPQPIATKCQKWRHSQVTNAAANCPGQMTLHHKPFLACGGDGFTQSNFDGCITSALCVLEALKN 340 (342)
T ss_dssp HHHHHHHHHHHHHSCSCCCCSEEEEEEETTCSBSSCCSSSCSCEEEETTTEEEECSGGGSCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCCCceeeeccccccccccccCCCcceeEecCCccEEEEccccCCCCccHHHHHHHHHHHHHHh
Confidence 999999999998876677899999999999999987632345665 7789999999999999999999999999999976
Q ss_pred Hh
Q 024514 262 IL 263 (266)
Q Consensus 262 ~l 263 (266)
.|
T Consensus 341 ~l 342 (342)
T 3qj4_A 341 YI 342 (342)
T ss_dssp C-
T ss_pred hC
Confidence 53
No 2
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=99.95 E-value=4.8e-27 Score=209.72 Aligned_cols=234 Identities=34% Similarity=0.605 Sum_probs=192.5
Q ss_pred cccccCCCeeeeCChhHHHHHHHHHhCCccccccccceeeecCCceeeecccCCCCccEEeCCCchHHHHHHhcCCC---
Q 024514 14 MLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPD--- 90 (266)
Q Consensus 14 ~~~DhGaqyfta~~~~f~~~~~~~~~~g~v~~W~~~~~~~~~~~~~~~~~~~~~~~~~yvg~pgm~~l~~~l~~~~~--- 90 (266)
..+|+|+++|+..++.|.++++.|...+.+.+|...+..++.. .+.. ......+|++.++|..+.+.|+++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~l~~~l~~g~~i~~ 124 (336)
T 1yvv_A 49 GALDMGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAG--RLSP--SPDEQVRWVGKPGMSAITRAMRGDMPVSF 124 (336)
T ss_dssp EEEECSCCCBCCCSHHHHHHHHHHHHHTSEEEECCCEEEESSS--BCCC--CCTTSCEEEESSCTHHHHHHHHTTCCEEC
T ss_pred CeEecCCCeEecCCHHHHHHHHHHHhCCCeeeccccceeccCc--cccc--CCCCCccEEcCccHHHHHHHHHccCcEEe
Confidence 4689999999999999999999999999999999876655432 2221 22456799999999999999998771
Q ss_pred ------------------------------------------CCCChhHHHHhccCCCcceeeEeeccCCCCCCCCCcce
Q 024514 91 ------------------------------------------LTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGF 128 (266)
Q Consensus 91 ------------------------------------------~~~~p~l~~~l~~v~y~p~~~l~l~~~~~~~~~p~~g~ 128 (266)
+...|.+...+..+.|.+|+++++.|+++.. .++.++
T Consensus 125 ~~~v~~i~~~~~~~~v~~~~g~~~~~a~~vV~a~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 203 (336)
T 1yvv_A 125 SCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAAAPKLASVVAGVKMDPTWAVALAFETPLQ-TPMQGC 203 (336)
T ss_dssp SCCEEEEEECSSCEEEEETTSCEEEEESEEEECSCHHHHGGGGTTCHHHHHHHTTCCEEEEEEEEEEESSCCS-CCCCEE
T ss_pred cCEEEEEEEeCCEEEEEeCCCcCccccCEEEEcCCHHHHHHhhccCHHHHHHHhhcCccceeEEEEEecCCCC-CCCCeE
Confidence 0123445566789999999999999998864 577887
Q ss_pred EecCCCceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCC-CCCCCcEEeE
Q 024514 129 SFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGL-SIPLPIFRKA 207 (266)
Q Consensus 129 ~~~~~~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~l~~-~l~~p~~~~~ 207 (266)
++++ .+++|+..+++||+|.+.+.+||++.+++|+..+.+. +++++.++++++|..+++ ..+.|.+..+
T Consensus 204 ~~~~-~~~~~l~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~~---------~~~~~~~~l~~~l~~~lg~~~~~p~~~~~ 273 (336)
T 1yvv_A 204 FVQD-SPLDWLARNRSKPERDDTLDTWILHATSQWSRQNLDA---------SREQVIEHLHGAFAELIDCTMPAPVFSLA 273 (336)
T ss_dssp EECS-SSEEEEEEGGGSTTCCCSSEEEEEEECHHHHHHTTTS---------CHHHHHHHHHHHHHTTCSSCCCCCSEEEE
T ss_pred EeCC-CceeEEEecCcCCCCCCCCcEEEEEeCHHHHHHHHhC---------CHHHHHHHHHHHHHHHhCCCCCCCcEEEc
Confidence 7654 5799999999999987643589999999999887765 578899999999997643 5556899999
Q ss_pred eccCCCCCCcccCCccCeeecCCCCeEEeeCCCCCCChhHHHHHHHHHHHHHHHHhc
Q 024514 208 HRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 208 hRW~~A~p~~~~~~~~~~~~~~~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
+||+|++|++..+ ..++++..++|++||||+.|++||+|++||.++|+.|.+.+.
T Consensus 274 ~rw~~a~~~~~~~--~~~~~~~~~rl~laGDa~~g~gv~~a~~sg~~lA~~l~~~~~ 328 (336)
T 1yvv_A 274 HRWLYARPAGAHE--WGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARRLLEHLQ 328 (336)
T ss_dssp EEEEEEEESSCCC--CSCEEETTTTEEECCGGGTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCccCCCCCCC--CCeeecCCCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999998875 356677889999999999999999999999999999998764
No 3
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=99.75 E-value=3.3e-16 Score=131.47 Aligned_cols=235 Identities=33% Similarity=0.593 Sum_probs=151.7
Q ss_pred cccccCCCeeeeCChhHHHHHHHHHhCCccccccccceeeecCCceeeecccCCCCccEEeCCCchHHHHHHhcCCC---
Q 024514 14 MLFDHGAPFFTVTNNDVLALVREWESGGLVAEWKVNLGSFDRVSKKFVNIQQDGMNKKYVGVPGMNSICKALCHQPD--- 90 (266)
Q Consensus 14 ~~~DhGaqyfta~~~~f~~~~~~~~~~g~v~~W~~~~~~~~~~~~~~~~~~~~~~~~~yvg~pgm~~l~~~l~~~~~--- 90 (266)
..+|||+|||+++++.|...+..+...+....+...+........ ........++.+..++............
T Consensus 49 ~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (336)
T 3kkj_A 49 GALDMGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRL----SPSPDEQVRWVGKPGMSAITRAMRGDMPVSF 124 (336)
T ss_dssp EEEECSCCCBCCCSHHHHHHHHHHHHHTSEEEECCCEEEESSSBC----CCCCTTSCEEEESSSTHHHHHHHHTTCCEEC
T ss_pred ceeecCccccccCcHHHHHHHHHHHhccccccccccccccccccc----cccccccceeecccccccchhcccccceeec
Confidence 469999999999999999999999988888887765554332211 1122345688899999888887776550
Q ss_pred -------------------------------C-----------CCChhHHHHhccCCCcceeeEeeccCCCCCCCCCcce
Q 024514 91 -------------------------------L-----------TFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGF 128 (266)
Q Consensus 91 -------------------------------~-----------~~~p~l~~~l~~v~y~p~~~l~l~~~~~~~~~p~~g~ 128 (266)
. ..............+......+..+...... .....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 203 (336)
T 3kkj_A 125 SCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAAAPKLASVVAGVKMDPTWAVALAFETPLQT-PMQGC 203 (336)
T ss_dssp SCCEEEEEECSSCEEEEETTSCEEEEESCEEECSCHHHHGGGGTTCHHHHHHHTTCCEEEEEEEEEEESSCCSC-CCCEE
T ss_pred ceeecccccccccccccccccccccccccceeccccchhhhhhcccccccccccccccccchhhhhcccccccc-ccccc
Confidence 0 0011122333344455555666655554321 11111
Q ss_pred EecCCCceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhc-CCCCCCCcEEeE
Q 024514 129 SFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGT-GLSIPLPIFRKA 207 (266)
Q Consensus 129 ~~~~~~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~l-~~~l~~p~~~~~ 207 (266)
.. ......+........+.....................+. ......+.....+... ....+.+.+..+
T Consensus 204 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (336)
T 3kkj_A 204 FV-QDSPLDWLARNRSKPERDDTLDTWILHATSQWSRQNLDA---------SREQVIEHLHGAFAELIDCTMPAPVFSLA 273 (336)
T ss_dssp EE-CSSSEEEEEEGGGSTTCCCSSEEEEEEECHHHHHHTTTS---------CHHHHHHHHHHHHHTTCSSCCCCCSEEEE
T ss_pred cc-cccccccccccccccccccccccceeccccccccccccc---------cchhhhhhhhhhhhhhccCCcCcchheec
Confidence 12 222334444444433322223345555555555544433 3444555555555543 445677899999
Q ss_pred eccCCCCCCcccCCccCeeecCCCCeEEeeCCCCCCChhHHHHHHHHHHHHHHHHhcc
Q 024514 208 HRWGSAFPAASIAKEERCLWDVKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILSC 265 (266)
Q Consensus 208 hRW~~A~p~~~~~~~~~~~~~~~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~~l~~ 265 (266)
|||+|++|..... ..++++..++|++||||+.|++|++|+.||..||++|++.|++
T Consensus 274 ~~w~~a~~~~~~~--~~~~~~~~~~v~l~GDa~~g~gv~~A~~sG~~aA~~I~~~L~~ 329 (336)
T 3kkj_A 274 HRWLYARPAGAHE--WGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARRLLEHLQL 329 (336)
T ss_dssp EEEEEEEESSCCC--CSSEEETTTTEEECCGGGTTSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred cceeecccccccC--ccceeeCCCCEEEEecccCCcCHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999987654 5677888899999999999999999999999999999999864
No 4
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=99.64 E-value=6.9e-16 Score=143.98 Aligned_cols=162 Identities=16% Similarity=0.116 Sum_probs=119.6
Q ss_pred hhHHHHhccCCCcceeeEeeccCCCCCCCCCcceEecC---CCceEEEEeCCCC-CCCC--CCCCcEEEEeChHHHHHhH
Q 024514 95 PDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQD---SEVLSWAHCDSSK-PGRS--ANSERWVLHSTADYARTVI 168 (266)
Q Consensus 95 p~l~~~l~~v~y~p~~~l~l~~~~~~~~~p~~g~~~~~---~~~l~wi~~~ssK-pgr~--~~~~~~vl~ss~~~s~~~~ 168 (266)
|.+.+.+.+++|.+++++++.|+++....+..|++++. ..+++|+ ++|+| |++. ++...++++....|...+.
T Consensus 300 ~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~ 378 (477)
T 3nks_A 300 APLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIV-YDSVAFPEQDGSPPGLRVTVMLGGSWLQTLE 378 (477)
T ss_dssp HHHHHHHHTCCEEEEEEEEEEETTCCCSSCSSEEECCTTTCSSEEEEE-CHHHHCGGGSTTTTCEEEEEEECHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEEEECCCCCCCCCceEEccCCCCCCceEEE-EeccccCCCCCCCCceEEEEEECCccccccc
Confidence 45567788899999999999999874212233666653 3467765 67777 7654 3345567778888887765
Q ss_pred hhcCCCCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccCCccC------eeecCCCCeEEeeCCCCC
Q 024514 169 AQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEER------CLWDVKRRLAICGDFCVS 242 (266)
Q Consensus 169 ~~~~~~~~~~~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~~~~~------~~~~~~~~l~~~GDw~~g 242 (266)
+... +.+++++.+.+++.|.++++..+.|.+.+++||++|+|++..++.+. .+....++|++||||+.|
T Consensus 379 ~~~~-----~~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G 453 (477)
T 3nks_A 379 ASGC-----VLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEG 453 (477)
T ss_dssp HSSC-----CCCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSC
T ss_pred cccC-----CCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCC
Confidence 4210 12578888889999987544346789999999999999998876321 222335689999999999
Q ss_pred CChhHHHHHHHHHHHHHHHH
Q 024514 243 PNVEGAILSGLDAASKLTEI 262 (266)
Q Consensus 243 ~~vE~A~~SG~~~A~~l~~~ 262 (266)
.+||+|++||.++|++|+..
T Consensus 454 ~gv~~a~~sg~~aA~~il~~ 473 (477)
T 3nks_A 454 VAVNDCIESGRQAAVSVLGT 473 (477)
T ss_dssp CSHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999864
No 5
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=99.52 E-value=1.4e-14 Score=134.22 Aligned_cols=158 Identities=12% Similarity=0.152 Sum_probs=112.1
Q ss_pred HHHHhccCCCcceeeEeeccCCCCCCCC--CcceEecCCCc--eEEEEeCCCC-CCCCCCC-CcEEEEeChHHHHHhHhh
Q 024514 97 LAVKLEEIPVNPCFALMLAFSEPLSSIP--VKGFSFQDSEV--LSWAHCDSSK-PGRSANS-ERWVLHSTADYARTVIAQ 170 (266)
Q Consensus 97 l~~~l~~v~y~p~~~l~l~~~~~~~~~p--~~g~~~~~~~~--l~wi~~~ssK-pgr~~~~-~~~vl~ss~~~s~~~~~~ 170 (266)
+.+.++.+.|.+++.+++.|+++....+ ..|++++.... +.-+.++|.+ |++.|.+ ..+++.....++..+.+.
T Consensus 299 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~~~~~~~~~~ 378 (470)
T 3i6d_A 299 AISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDL 378 (470)
T ss_dssp THHHHHTCEEEEEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECCSSCCGGGTS
T ss_pred hhHHHhcCCCCceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECCCCCccccCC
Confidence 3566778899999999999998752122 34556654432 2224455544 5555433 234444444444333333
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccCCcc------CeeecCCCCeEEeeCCCCCCC
Q 024514 171 TGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEE------RCLWDVKRRLAICGDFCVSPN 244 (266)
Q Consensus 171 ~~~~~~~~~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~~~~------~~~~~~~~~l~~~GDw~~g~~ 244 (266)
+++++.+.+++.+.++.+..+.|.+..+|||++++|++..|+.. ..+..+.++|++||||+.|.+
T Consensus 379 ---------~~~~~~~~~~~~l~~~~g~~~~p~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~g 449 (470)
T 3i6d_A 379 ---------SDNDIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVG 449 (470)
T ss_dssp ---------CHHHHHHHHHHHHGGGSCCCSCCSEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTSCCS
T ss_pred ---------CHHHHHHHHHHHHHHHhCCCCCceEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCCCCC
Confidence 57889999999999886555678999999999999998877532 123345679999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 024514 245 VEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 245 vE~A~~SG~~~A~~l~~~l 263 (266)
+|+|+.||..+|++|++.+
T Consensus 450 v~~a~~sG~~aA~~i~~~l 468 (470)
T 3i6d_A 450 IPDCIDQGKAAVSDALTYL 468 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999876
No 6
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=99.44 E-value=1.1e-13 Score=129.14 Aligned_cols=156 Identities=10% Similarity=0.116 Sum_probs=108.8
Q ss_pred HHhccCCCcceeeEeeccCCCCCCCCCc--ceEecCCCc--eEEEEeCCCC-CCCCCCCCcEEEEeChHHHHHhHhhcCC
Q 024514 99 VKLEEIPVNPCFALMLAFSEPLSSIPVK--GFSFQDSEV--LSWAHCDSSK-PGRSANSERWVLHSTADYARTVIAQTGL 173 (266)
Q Consensus 99 ~~l~~v~y~p~~~l~l~~~~~~~~~p~~--g~~~~~~~~--l~wi~~~ssK-pgr~~~~~~~vl~ss~~~s~~~~~~~~~ 173 (266)
+.++.+.|.|++++++.|+++.. .+.+ |++++.++. +..+.+.|.+ |.+.|+...+++.....+...+.+.
T Consensus 300 ~~~~~~~~~~~~~v~l~~~~~~~-~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~l~~~~~~~~~~~~~~~--- 375 (475)
T 3lov_A 300 PELEQLTTHSTATVTMIFDQQQS-LPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPDHTVLRAFVGRPGNDHLVHE--- 375 (475)
T ss_dssp HHHHTCCEEEEEEEEEEEECCSS-CSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTTEEEEEEEECBTTBCGGGGS---
T ss_pred HHHhcCCCCeEEEEEEEECCcCC-CCCCCEEEEecCCCCCceEEEEEEcccCCCCCCCcEEEEEEeCCCCCCcccCC---
Confidence 45667899999999999998752 3444 456654432 2234455555 5555531223333333433333333
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccCCcc------CeeecCCCCeEEeeCCCCCCChhH
Q 024514 174 QKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEE------RCLWDVKRRLAICGDFCVSPNVEG 247 (266)
Q Consensus 174 ~~~~~~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~~~~------~~~~~~~~~l~~~GDw~~g~~vE~ 247 (266)
+++++.+.+++.+.++.+....|.+..++||++++|++..|+.. ..+..+.++|++||||+.|.++|+
T Consensus 376 ------~~e~~~~~~~~~L~~~~g~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~g~~~ 449 (475)
T 3lov_A 376 ------SDEVLQQAVLQDLEKICGRTLEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLAYDGVGLPD 449 (475)
T ss_dssp ------CHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHSTTEEECSTTTSCSSHHH
T ss_pred ------CHHHHHHHHHHHHHHHhCCCCCCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHH
Confidence 57888899999998874444578999999999999998877521 123345679999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 024514 248 AILSGLDAASKLTEILS 264 (266)
Q Consensus 248 A~~SG~~~A~~l~~~l~ 264 (266)
|++||..+|++|+..++
T Consensus 450 a~~sG~~aA~~i~~~l~ 466 (475)
T 3lov_A 450 CVASAKTMIESIELEQS 466 (475)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998764
No 7
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=99.34 E-value=2e-12 Score=120.51 Aligned_cols=159 Identities=17% Similarity=0.165 Sum_probs=108.6
Q ss_pred HHHHhccCCCcceeeEeeccCCCCCCC-CCcceEecC--CCceEEEEeCCCC-CCCCCCC-CcEEEEeChHHHHHhHhhc
Q 024514 97 LAVKLEEIPVNPCFALMLAFSEPLSSI-PVKGFSFQD--SEVLSWAHCDSSK-PGRSANS-ERWVLHSTADYARTVIAQT 171 (266)
Q Consensus 97 l~~~l~~v~y~p~~~l~l~~~~~~~~~-p~~g~~~~~--~~~l~wi~~~ssK-pgr~~~~-~~~vl~ss~~~s~~~~~~~ 171 (266)
..+.++++.|.+++++++.|+++.... ...+++++. +..+.++.+++++ |++.|.+ .+++++....++....+.
T Consensus 306 ~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~~~~~~~~~~- 384 (478)
T 2ivd_A 306 LAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQ- 384 (478)
T ss_dssp HHHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGS-
T ss_pred HHHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCCCCceEEEEEEcccCCCcCCCCCEEEEEEeCCcCCccccCC-
Confidence 346678899999999999999874112 122444432 2345567777776 6665533 356666665554332222
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccCCccCe-----eecCCCCeEEeeCCCCCCChh
Q 024514 172 GLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERC-----LWDVKRRLAICGDFCVSPNVE 246 (266)
Q Consensus 172 ~~~~~~~~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~~~~~~-----~~~~~~~l~~~GDw~~g~~vE 246 (266)
+++++.+.+++.+.++.+....|....+++|.++.|.+..++.... .....++|++||||+.|.+||
T Consensus 385 --------~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~ 456 (478)
T 2ivd_A 385 --------DEDALAALAREELKALAGVTARPSFTRVFRWPLGIPQYNLGHLERVAAIDAALQRLPGLHLIGNAYKGVGLN 456 (478)
T ss_dssp --------CHHHHHHHHHHHHHHHHCCCSCCSEEEEEEESSCCBCCBTTHHHHHHHHHHHHHTSTTEEECSTTTSCCSHH
T ss_pred --------CHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCcccCCCcCHHHHHHHHHHHHhhCCCEEEEccCCCCCCHH
Confidence 5688888899998876544456888889999999988776531110 112247999999999888999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 024514 247 GAILSGLDAASKLTEILS 264 (266)
Q Consensus 247 ~A~~SG~~~A~~l~~~l~ 264 (266)
+|+.||..+|++|+..+.
T Consensus 457 gA~~SG~~aA~~i~~~l~ 474 (478)
T 2ivd_A 457 DCIRNAAQLADALVAGNT 474 (478)
T ss_dssp HHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999987664
No 8
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=99.30 E-value=1.3e-10 Score=106.45 Aligned_cols=175 Identities=13% Similarity=0.088 Sum_probs=116.4
Q ss_pred cEEeCCCchHHHHHHhcCC-CCCCChhHHHHhccCCCcceeeEeeccCCCCCCCCCcceEecCC-CceEEEEeCCCC-CC
Q 024514 71 KYVGVPGMNSICKALCHQP-DLTFAPDLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDS-EVLSWAHCDSSK-PG 147 (266)
Q Consensus 71 ~yvg~pgm~~l~~~l~~~~-~~~~~p~l~~~l~~v~y~p~~~l~l~~~~~~~~~p~~g~~~~~~-~~l~wi~~~ssK-pg 147 (266)
..|-.-+...+.+ |+.+. .++..+.+.+.++++.|.+..++.++|++++. +..++++..+ ..+..+...|.+ |+
T Consensus 243 ~VV~a~~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~p~ 319 (425)
T 3ka7_A 243 LVISNLGHAATAV-LCSEALSKEADAAYFKMVGTLQPSAGIKICLAADEPLV--GHTGVLLTPYTRRINGVNEVTQADPE 319 (425)
T ss_dssp EEEECSCHHHHHH-HTTTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCSS--CSSSEEECCSSSSEEEEECGGGTCGG
T ss_pred EEEECCCHHHHHH-hcCCcccccCCHHHHHHhhCcCCCceEEEEeecCCCcc--CcCEEEECCChhhcceEEeccCCCCC
Confidence 4555555555554 55432 12224567788899999999999999998752 4556655433 346678888888 88
Q ss_pred CCCCCC-cEEEEeChHHHHHhHhhcCCCCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccCCccC-e
Q 024514 148 RSANSE-RWVLHSTADYARTVIAQTGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEER-C 225 (266)
Q Consensus 148 r~~~~~-~~vl~ss~~~s~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~~~~~-~ 225 (266)
++|.+. .+.++....| ...+ ..++..+.+++.++++.+. ..++...++||+.++|++..++... .
T Consensus 320 ~ap~G~~~l~~~~~~~~--~~~~----------~~~~~~~~~~~~l~~~~p~-~~~~~~~v~~~~~~~P~~~~~~~~~~~ 386 (425)
T 3ka7_A 320 LAPPGKHLTMCHQYVAP--ENVK----------NLESEIEMGLEDLKEIFPG-KRYEVLLIQSYHDEWPVNRAASGTDPG 386 (425)
T ss_dssp GSCTTCEEEEEEEEECG--GGGG----------GHHHHHHHHHHHHHHHSTT-CCEEEEEEEEEBTTBCSBSSCTTCCCC
T ss_pred cCCCCCeEEEEEecccc--cccc----------chHHHHHHHHHHHHHhCCC-CceEEEEEEEECCCccccccccCCCCC
Confidence 887542 2333332222 1111 1244458888888887654 4677789999999999998775321 1
Q ss_pred eecCCCCeEEeeCCCCC---CChhHHHHHHHHHHHHHHH
Q 024514 226 LWDVKRRLAICGDFCVS---PNVEGAILSGLDAASKLTE 261 (266)
Q Consensus 226 ~~~~~~~l~~~GDw~~g---~~vE~A~~SG~~~A~~l~~ 261 (266)
...+-++|++||||+.| .+||+|+.||+.++++|+.
T Consensus 387 ~~~p~~gL~laG~~~~~~gg~gv~~~~~s~~~~~~~i~~ 425 (425)
T 3ka7_A 387 NETPFSGLYVVGDGAKGKGGIEVEGVALGVMSVMEKVLG 425 (425)
T ss_dssp SBCSSBTEEECSTTSCCTTCCHHHHHHHHHHHHHHC---
T ss_pred CCCCcCCeEEeCCccCCCCCCccHHHHHHHHHHHHHhhC
Confidence 12233589999999976 7999999999999998863
No 9
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=99.08 E-value=9.6e-10 Score=100.88 Aligned_cols=141 Identities=14% Similarity=0.132 Sum_probs=89.6
Q ss_pred HHHHhccCCCcceeeEeeccCCCCCCCCCcceEecCCCceEEEEeCCCC-CCCCCCCCcEEEEeChHHHHHhHhhcCCCC
Q 024514 97 LAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSK-PGRSANSERWVLHSTADYARTVIAQTGLQK 175 (266)
Q Consensus 97 l~~~l~~v~y~p~~~l~l~~~~~~~~~p~~g~~~~~~~~l~wi~~~ssK-pgr~~~~~~~vl~ss~~~s~~~~~~~~~~~ 175 (266)
..+.++++.|.+++.+.++++++. .+..++++..+..+..+.+.|.+ |.++|.+. -++..+. +...
T Consensus 257 ~~~~~~~~~~~~~~~v~l~~~~~~--~~~~~~~~~~~~~~~~i~~~s~~~p~~ap~G~-~~~~~~~-----~~~~----- 323 (421)
T 3nrn_A 257 YLKQVDSIEPSEGIKFNLAVPGEP--RIGNTIVFTPGLMINGFNEPSALDKSLAREGY-TLIMAHM-----ALKN----- 323 (421)
T ss_dssp HHHHHHTCCCCCEEEEEEEEESSC--SSCSSEEECTTSSSCEEECGGGTCGGGSCTTE-EEEEEEE-----ECTT-----
T ss_pred HHHHHhCCCCCceEEEEEEEcCCc--ccCCeEEEcCCcceeeEeccCCCCCCcCCCCc-eEEEEEE-----eecc-----
Confidence 445677889999999999999873 23455655443336668788888 88887542 2222221 1111
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccC--CccCeeecCCCCeEEeeCCCCCC-Ch--hHHHH
Q 024514 176 PSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIA--KEERCLWDVKRRLAICGDFCVSP-NV--EGAIL 250 (266)
Q Consensus 176 ~~~~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~--~~~~~~~~~~~~l~~~GDw~~g~-~v--E~A~~ 250 (266)
.+.++..+.+++.+.++.+ ..+...++||+-++|++... ...+ ..+ ++|++||||+.++ ++ |+|+.
T Consensus 324 ---~~~~~~~~~~~~~L~~~~p---~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~-~gl~laGd~~~~~~g~~~~ga~~ 394 (421)
T 3nrn_A 324 ---GNVKKAIEKGWEELLEIFP---EGEPLLAQVYRDGNPVNRTRAGLHIE--WPL-NEVLVVGDGYRPPGGIEVDGIAL 394 (421)
T ss_dssp ---CCHHHHHHHHHHHHHHHCT---TCEEEEEEEC-------------CCC--CCC-SSEEECSTTCCCTTCCHHHHHHH
T ss_pred ---ccHHHHHHHHHHHHHHHcC---CCeEEEeeeccCCCCcccccCCCCCC--CCC-CcEEEECCcccCCCceeeehHHH
Confidence 0233446778888887765 44556789999999998432 1112 455 8999999999988 66 99999
Q ss_pred HHHHHHHHH
Q 024514 251 SGLDAASKL 259 (266)
Q Consensus 251 SG~~~A~~l 259 (266)
||..+|++|
T Consensus 395 sg~~aA~~l 403 (421)
T 3nrn_A 395 GVMKALEKL 403 (421)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999998
No 10
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=98.93 E-value=2.9e-10 Score=106.63 Aligned_cols=154 Identities=18% Similarity=0.196 Sum_probs=99.9
Q ss_pred hccCCCcceeeEeeccCCCC-C-CCCCcceEecCCC------ceEEEEeCCCC-CCCCCCCC-cEEEEeChHHHHHhHhh
Q 024514 101 LEEIPVNPCFALMLAFSEPL-S-SIPVKGFSFQDSE------VLSWAHCDSSK-PGRSANSE-RWVLHSTADYARTVIAQ 170 (266)
Q Consensus 101 l~~v~y~p~~~l~l~~~~~~-~-~~p~~g~~~~~~~------~l~wi~~~ssK-pgr~~~~~-~~vl~ss~~~s~~~~~~ 170 (266)
+..+.|.++..+.+.|+++. . ..+..+++++..+ .++ +.+.|.+ |.+.|.+. .++.+........ ++.
T Consensus 326 l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~-~~~~s~~~~~~~p~g~~~l~~~~~g~~~~~-~~~ 403 (504)
T 1sez_A 326 IPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLG-TLFSSMMFPDRAPNNVYLYTTFVGGSRNRE-LAK 403 (504)
T ss_dssp SCCCCEEEEEEEEEEEEGGGBSSCCCSSEEECCGGGGGGTCCSSE-EEEHHHHCGGGSCTTEEEEEEEEESTTCGG-GTT
T ss_pred HhcCCCCceEEEEEEEchhhcCCCCCceEEEcCCCCCCCCCccce-EEeeccccCCcCCCCCEEEEEEeCCCCccc-ccC
Confidence 45677889999999998753 1 1122355554321 222 3344444 55555332 2222322222211 111
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccCCccC-----eeecCCCCeEEeeCCCCCCCh
Q 024514 171 TGLQKPSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEER-----CLWDVKRRLAICGDFCVSPNV 245 (266)
Q Consensus 171 ~~~~~~~~~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~~~~~-----~~~~~~~~l~~~GDw~~g~~v 245 (266)
.+++++.+.+++.|+++.+....|....++||.+++|++..++... ....+.++|++||+|+.|..+
T Consensus 404 --------~~~ee~~~~v~~~L~~~~g~~~~p~~~~~~~w~~~~p~~~~g~~~~~~~~~~~~~~~~~l~~aG~~~~g~~v 475 (504)
T 1sez_A 404 --------ASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLSV 475 (504)
T ss_dssp --------CCHHHHHHHHHHHHHHHHCBCSCCSSEEEEEEEEEEECCCTTHHHHHHHHHHHHHHSTTEEECCSSSSCSSH
T ss_pred --------CCHHHHHHHHHHHHHHHhCCCCCCeEEEEeECCCCCCccCcCHHHHHHHHHHHHHhCCCEEEEeecCCCCCH
Confidence 1567888888888887644334688889999999999988765221 112345799999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhc
Q 024514 246 EGAILSGLDAASKLTEILS 264 (266)
Q Consensus 246 E~A~~SG~~~A~~l~~~l~ 264 (266)
++|+.||..+|++|+..+.
T Consensus 476 ~gai~sG~~aA~~il~~l~ 494 (504)
T 1sez_A 476 GKALSSGCNAADLVISYLE 494 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 11
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=98.87 E-value=1.8e-08 Score=92.99 Aligned_cols=157 Identities=11% Similarity=0.105 Sum_probs=100.8
Q ss_pred hHHHHhccCCCcceeeEeeccCCCCC-CCCCcceEecCCCceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhcCCC
Q 024514 96 DLAVKLEEIPVNPCFALMLAFSEPLS-SIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQ 174 (266)
Q Consensus 96 ~l~~~l~~v~y~p~~~l~l~~~~~~~-~~p~~g~~~~~~~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~~~ 174 (266)
...+.++++.|.++..+.+.|+++.. ...+.|..+..+..+.++. ++++|... ..+++.+....++....+.
T Consensus 281 ~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~-~~~~~~~~--~~~l~~~~~~~~~~~~~~~---- 353 (453)
T 2yg5_A 281 RQHQMHQHQSLGLVIKVHAVYETPFWREDGLSGTGFGASEVVQEVY-DNTNHEDD--RGTLVAFVSDEKADAMFEL---- 353 (453)
T ss_dssp HHHHHGGGEEECCEEEEEEEESSCGGGGGTEEEEEECTTSSSCEEE-ECCCTTCS--SEEEEEEEEHHHHHHHHHS----
T ss_pred HHHHHHhcCCCcceEEEEEEECCCCCCCCCCCceeecCCCCeEEEE-eCCCCCCC--CCEEEEEeccHHHHHHhcC----
Confidence 34567888999999999999988631 1124455444445666664 44454321 2366777666665543333
Q ss_pred CCChhhHHHHHHHHHHHHHhcCC-CCCCCcEEeEeccCC---CC----CCcccCCcc---CeeecCCCCeEEeeCCCC--
Q 024514 175 KPSEATLKKVAEEMFQEFQGTGL-SIPLPIFRKAHRWGS---AF----PAASIAKEE---RCLWDVKRRLAICGDFCV-- 241 (266)
Q Consensus 175 ~~~~~~~~~v~~~l~~~~~~l~~-~l~~p~~~~~hRW~~---A~----p~~~~~~~~---~~~~~~~~~l~~~GDw~~-- 241 (266)
+++++.+.+++.++++.+ ....|....+++|.. +. +.+..++.. +.+..+.++|++|||++.
T Consensus 354 -----~~~~~~~~~l~~L~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~~~~p~~~l~~aG~~~~~~ 428 (453)
T 2yg5_A 354 -----SAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAASFDLGGLHRYGADSRTPVGPIHFSCSDIAAE 428 (453)
T ss_dssp -----CHHHHHHHHHHHHHHHHCGGGGCCSEEEECCTTTCTTTCSSSCEEECTTHHHHHGGGTTCCBTTEEECCGGGCST
T ss_pred -----CHHHHHHHHHHHHHHHhCccCCCccEEEEeecCCCCCCCCCCcCcCCCCccccchHHHhCCcCceEEeecccccc
Confidence 467788888888886543 334688888999973 32 122222110 122345579999999873
Q ss_pred -CCChhHHHHHHHHHHHHHHHHhc
Q 024514 242 -SPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 242 -g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
.+.||+|++||..+|++|+..+.
T Consensus 429 ~~g~v~gA~~SG~~aA~~i~~~l~ 452 (453)
T 2yg5_A 429 GYQHVDGAVRMGQRTAADIIARSK 452 (453)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHC-
T ss_pred cccchHHHHHHHHHHHHHHHHHhc
Confidence 35899999999999999988653
No 12
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=98.73 E-value=1.9e-07 Score=88.01 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=96.2
Q ss_pred hHHHHhccCCCcceeeEeeccCCCCC-CCCCcceEe--cCCCceEEEEeCCCCC-CCCCCCCcEEEEeChHHHHHhHhhc
Q 024514 96 DLAVKLEEIPVNPCFALMLAFSEPLS-SIPVKGFSF--QDSEVLSWAHCDSSKP-GRSANSERWVLHSTADYARTVIAQT 171 (266)
Q Consensus 96 ~l~~~l~~v~y~p~~~l~l~~~~~~~-~~p~~g~~~--~~~~~l~wi~~~ssKp-gr~~~~~~~vl~ss~~~s~~~~~~~ 171 (266)
...+.++++.|.++..+.+.|+++.. ...+.|..+ .++..+.++ ++++++ +.. ..++.......+. .++..
T Consensus 281 ~~~~~i~~~~~~~~~kv~l~~~~~~w~~~~~~g~~~~~~~~~~~~~~-~d~~~~~~~~---~~l~~~~~~~~a~-~~~~~ 355 (520)
T 1s3e_A 281 MRNQMITRVPLGSVIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYT-LDDTKPEGNY---AAIMGFILAHKAR-KLARL 355 (520)
T ss_dssp HHHHHTTSCCBCCEEEEEEECSSCGGGGGTEEEEEEECSTTCSCSEE-EECCCTTSCS---CEEEEEEETHHHH-HHTTS
T ss_pred HHHHHHHhCCCcceEEEEEEeCCCcccCCCCCceeeccCCCCceEEE-eeCCCCCCCC---CEEEEEccchhhh-hhhcC
Confidence 34567889999999999999998741 123445443 233456655 455553 221 2444444433332 23221
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCC--CCCCcEEeEeccCC---CCC----CcccCCcc---CeeecCCCCeEEeeCC
Q 024514 172 GLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWGS---AFP----AASIAKEE---RCLWDVKRRLAICGDF 239 (266)
Q Consensus 172 ~~~~~~~~~~~~v~~~l~~~~~~l~~~--l~~p~~~~~hRW~~---A~p----~~~~~~~~---~~~~~~~~~l~~~GDw 239 (266)
+++++.+.+++.++++.+. ...|.....++|.. +.- ....|... ..+..+..+|++|||+
T Consensus 356 --------~~~e~~~~vl~~L~~~~~~~~~~~p~~~~~~~W~~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~~L~fAG~~ 427 (520)
T 1s3e_A 356 --------TKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIYFAGTE 427 (520)
T ss_dssp --------CHHHHHHHHHHHHHHHHTCGGGGCCSEEEEEEGGGCTTTCSSSCBCCCTTHHHHHGGGTTCCBTTEEECSGG
T ss_pred --------CHHHHHHHHHHHHHHHhCccccCCccEEEEEeeCCCCCCCCCCccccCCCccccchHHHhCCCCCEEEeehh
Confidence 4677788888888765432 34688888999963 321 11222100 1122344689999998
Q ss_pred C---CCCChhHHHHHHHHHHHHHHHHhc
Q 024514 240 C---VSPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 240 ~---~g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
+ ..+.+|+|++||..+|++|+..+.
T Consensus 428 t~~~~~g~v~GAi~SG~~aA~~i~~~l~ 455 (520)
T 1s3e_A 428 TATHWSGYMEGAVEAGERAAREILHAMG 455 (520)
T ss_dssp GCSSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCcCcEEhHHHHHHHHHHHHHHHHHHh
Confidence 6 346899999999999999998763
No 13
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=98.72 E-value=5.4e-09 Score=98.24 Aligned_cols=154 Identities=10% Similarity=0.100 Sum_probs=106.4
Q ss_pred hhHHHHhccCCCcceeeEeeccCCCCCC--CCCcceEecCCC-ceEEEEeCCCC-CCCCCCCCcEEEEeChHHHHHhHhh
Q 024514 95 PDLAVKLEEIPVNPCFALMLAFSEPLSS--IPVKGFSFQDSE-VLSWAHCDSSK-PGRSANSERWVLHSTADYARTVIAQ 170 (266)
Q Consensus 95 p~l~~~l~~v~y~p~~~l~l~~~~~~~~--~p~~g~~~~~~~-~l~wi~~~ssK-pgr~~~~~~~vl~ss~~~s~~~~~~ 170 (266)
+.+.+.++.+.|.++.++.++|+.+... .+..++++++.+ .+.++..-|+| |.+.|.+ .+++.....++ ...+.
T Consensus 284 ~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~~~~~ri~~~s~~~p~~ap~g-~~~l~~e~~~~-~~~~~ 361 (484)
T 4dsg_A 284 DEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFSNYSKYNVPEG-HWSLMLEVSES-KYKPV 361 (484)
T ss_dssp GGHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTTCSCSEEECGGGTCGGGSCTT-EEEEEEEEEEB-TTBCC
T ss_pred HHHHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCCCeEEEEEeecCCCcccCCCC-eEEEEEEEecC-cCCcC
Confidence 4455668889999999999999987421 245667776543 45667777778 8877744 45544332211 11111
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHhcCCCCC-CC-cEEeEeccCCCCCCcccCCccCe-----eecCCCCeEEeeC---CC
Q 024514 171 TGLQKPSEATLKKVAEEMFQEFQGTGLSIP-LP-IFRKAHRWGSAFPAASIAKEERC-----LWDVKRRLAICGD---FC 240 (266)
Q Consensus 171 ~~~~~~~~~~~~~v~~~l~~~~~~l~~~l~-~p-~~~~~hRW~~A~p~~~~~~~~~~-----~~~~~~~l~~~GD---w~ 240 (266)
+++++.+..++++..+++..+ .+ ....++||.++.|++..++.... ..... +|.+||. |.
T Consensus 362 ---------~d~~l~~~a~~~L~~~~~~~~~~~~~~~~v~r~~~~yP~y~~~~~~~~~~~~~~l~~~-~l~~~Gr~g~~~ 431 (484)
T 4dsg_A 362 ---------NHSTLIEDCIVGCLASNLLLPEDLLVSKWHYRIEKGYPTPFIGRNNLLEKAQPELMSR-CIYSRGRFGAWR 431 (484)
T ss_dssp ---------CTTSHHHHHHHHHHHTTSCCTTCCEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHT-TEEECSTTTTCC
T ss_pred ---------CHHHHHHHHHHHHHHcCCCCccceEEEEEEEEeCccccCCCccHHHHHHHHHHHHHhC-CcEeecCCcccc
Confidence 457788888888887753222 23 33579999999999998864311 12333 9999998 77
Q ss_pred CCC-ChhHHHHHHHHHHHHHH
Q 024514 241 VSP-NVEGAILSGLDAASKLT 260 (266)
Q Consensus 241 ~g~-~vE~A~~SG~~~A~~l~ 260 (266)
+|. ++++|+.||+.+|+.|+
T Consensus 432 y~v~~~d~~i~sg~~aa~~i~ 452 (484)
T 4dsg_A 432 YEVGNQDHSFMQGVEAIDHVL 452 (484)
T ss_dssp GGGCSHHHHHHHHHHHHHHHT
T ss_pred cCCCChHHHHHHHHHHHHHHH
Confidence 884 99999999999999997
No 14
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=98.57 E-value=9.5e-08 Score=89.31 Aligned_cols=150 Identities=15% Similarity=0.085 Sum_probs=92.5
Q ss_pred hHHHHhccCCCcceeeEeeccCCCCCCCCCcceEecCCCceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhcCCCC
Q 024514 96 DLAVKLEEIPVNPCFALMLAFSEPLSSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTGLQK 175 (266)
Q Consensus 96 ~l~~~l~~v~y~p~~~l~l~~~~~~~~~p~~g~~~~~~~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~~~~ 175 (266)
...++++.+.|.++..+.+.|+++.. ..+.|+..++ ..+.++..++..|+. ...++.... ... ++.
T Consensus 325 ~~~~ai~~~~~~~~~kv~l~~~~~~~-~~~~g~~~~~-~~~~~~~~~~~~~~~---~~vl~~~~~-~~~--~~~------ 390 (495)
T 2vvm_A 325 ERISAMQAGHVSMCTKVHAEVDNKDM-RSWTGIAYPF-NKLCYAIGDGTTPAG---NTHLVCFGN-SAN--HIQ------ 390 (495)
T ss_dssp HHHHHHHHCCCCCCEEEEEEESCGGG-GGEEEEECSS-CSSCEEEEEEECTTS---CEEEEEEEC-STT--CCC------
T ss_pred HHHHHHHhcCCCceeEEEEEECCccC-CCceeEecCC-CCcEEEecCCCCCCC---CeEEEEEeC-ccc--cCC------
Confidence 44667888999999999999998642 1355544333 457777655554431 123343322 111 111
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCCcEEeEeccC---CCC---CCcccCCcc---CeeecCCCCeEEeeCCCC---CC
Q 024514 176 PSEATLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWG---SAF---PAASIAKEE---RCLWDVKRRLAICGDFCV---SP 243 (266)
Q Consensus 176 ~~~~~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~---~A~---p~~~~~~~~---~~~~~~~~~l~~~GDw~~---g~ 243 (266)
.++..+.+++.|+.+.+....|....++||. |+. +....|... ..+..+..+|++|||++. .+
T Consensus 391 -----~~e~~~~~~~~L~~~~~~~~~~~~~~~~~W~~dp~~~g~y~~~~~g~~~~~~~~l~~p~~~l~fAGe~t~~~~~g 465 (495)
T 2vvm_A 391 -----PDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQGLREKHGGVVFANSDWALGWRS 465 (495)
T ss_dssp -----TTTCHHHHHHHHHTTSTTSCCEEEEEECCTTTCTTTSSSSCCCCTTHHHHHHHHHHCCBTTEEECCGGGCSSSTT
T ss_pred -----CHHHHHHHHHHHHHhcCCCCCceEEEEeEcCCCCCCCCCccCcCCCcchhhHHHHhCcCCCEEEechhhhcCCce
Confidence 1122344566666665544567888899994 333 332233210 123345679999999975 47
Q ss_pred ChhHHHHHHHHHHHHHHHHhc
Q 024514 244 NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 244 ~vE~A~~SG~~~A~~l~~~l~ 264 (266)
.+|+|++||..+|++|+..+.
T Consensus 466 ~veGAi~SG~raA~~i~~~l~ 486 (495)
T 2vvm_A 466 FIDGAIEEGTRAARVVLEELG 486 (495)
T ss_dssp SHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEhHHHHHHHHHHHHHHHhc
Confidence 899999999999999998764
No 15
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=98.51 E-value=1.8e-06 Score=80.31 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=94.2
Q ss_pred HHHHhccCCCcceeeEeeccCCCCCCC-CCcceEec-CCC---ceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhc
Q 024514 97 LAVKLEEIPVNPCFALMLAFSEPLSSI-PVKGFSFQ-DSE---VLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQT 171 (266)
Q Consensus 97 l~~~l~~v~y~p~~~l~l~~~~~~~~~-p~~g~~~~-~~~---~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~ 171 (266)
..++++.+.|.+...+.+.|+++.... +-.++++. +.. ...|...+...|+ ...+++......+. .++..
T Consensus 286 ~~~ai~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~l~~~~~~~~a~-~~~~~ 360 (472)
T 1b37_A 286 KVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPD----ANVLLVTVTDEESR-RIEQQ 360 (472)
T ss_dssp HHHHHHHSEEECEEEEEEECSSCCSCCSTTCSEEEECCSSTTSSCEEEECTTTSTT----CCEEEEEEEHHHHH-HHHTS
T ss_pred HHHHHHhcCCcceeEEEEECCCcCCCCCCCcceEEecccCCccceeeecccCCCCC----CCEEEEEechHHHH-HHHhC
Confidence 456788888999999999999864211 11223331 111 1234433433332 23444444433332 33321
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCC--CCCCcEEeEeccC------CCCCCcccCCcc---CeeecCCCCeEEeeCCC
Q 024514 172 GLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWG------SAFPAASIAKEE---RCLWDVKRRLAICGDFC 240 (266)
Q Consensus 172 ~~~~~~~~~~~~v~~~l~~~~~~l~~~--l~~p~~~~~hRW~------~A~p~~~~~~~~---~~~~~~~~~l~~~GDw~ 240 (266)
+++++.+.+++.++++.+. .+.|....+++|. -+.+....|+.. ..+..+..+|++||+++
T Consensus 361 --------~~~e~~~~~l~~L~~~~Pg~~~~~~~~~~~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~~l~fAG~~t 432 (472)
T 1b37_A 361 --------SDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHT 432 (472)
T ss_dssp --------CHHHHHHHHHHHHHHHCTTSCCCCCSEEECCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBTTEEECSGGG
T ss_pred --------CHHHHHHHHHHHHHHHcCCCCCCCCceEEecccCCCCCCCcccCCCCCCCChhHHHHHhccCCcEEEeeccc
Confidence 4688889999999887632 3567777789993 233333333211 11224557999999998
Q ss_pred C---CCChhHHHHHHHHHHHHHHHHh
Q 024514 241 V---SPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 241 ~---g~~vE~A~~SG~~~A~~l~~~l 263 (266)
. ++.||||++||..+|++|+..+
T Consensus 433 ~~~~~g~v~GA~~SG~~aA~~i~~~l 458 (472)
T 1b37_A 433 SEHYNGYVHGAYLSGIDSAEILINCA 458 (472)
T ss_dssp CTTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4 5699999999999999998876
No 16
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=98.45 E-value=5.9e-07 Score=83.78 Aligned_cols=157 Identities=13% Similarity=0.031 Sum_probs=96.9
Q ss_pred hhHHHHhccCCCcceeeEeeccCCCC--CCCCCcceEecCCCceEEEEeCCCCCCCCCCCCcEE-EEeChHHHHHhHhhc
Q 024514 95 PDLAVKLEEIPVNPCFALMLAFSEPL--SSIPVKGFSFQDSEVLSWAHCDSSKPGRSANSERWV-LHSTADYARTVIAQT 171 (266)
Q Consensus 95 p~l~~~l~~v~y~p~~~l~l~~~~~~--~~~p~~g~~~~~~~~l~wi~~~ssKpgr~~~~~~~v-l~ss~~~s~~~~~~~ 171 (266)
+...+.++++.|.++..+.+.|+++. ......|.+...+..+..+...|.+.. .+ ...++ ............+.
T Consensus 306 ~~~~~~l~~~~~~~~~kv~l~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~s~~~~-~~-~~~l~~~~~~g~~~~~~~~~- 382 (489)
T 2jae_A 306 GDVLTALKAAKPSSSGKLGIEYSRRWWETEDRIYGGASNTDKDISQIMFPYDHYN-SD-RGVVVAYYSSGKRQEAFESL- 382 (489)
T ss_dssp HHHHHHHHTEECCCEEEEEEEESSCHHHHTTCCCSCEEEESSTTCEEECCSSSTT-SS-CEEEEEEEEETHHHHHHHTS-
T ss_pred HHHHHHHHhCCCccceEEEEEeCCCCccCCCCcccccccCCCCceEEEeCCCCCC-CC-CCEEEEEeeCCchhhhhhcC-
Confidence 34567788999999999999999863 111334322222234556767776632 12 11222 22333444322222
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCC--CCCCcEEeEeccCCCCCCcccCCc----------cC-------eeecCCCC
Q 024514 172 GLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWGSAFPAASIAKE----------ER-------CLWDVKRR 232 (266)
Q Consensus 172 ~~~~~~~~~~~~v~~~l~~~~~~l~~~--l~~p~~~~~hRW~~A~p~~~~~~~----------~~-------~~~~~~~~ 232 (266)
+++++.+.+++.++++.+. ...|.....++|.... +..|.- +. .+..+.++
T Consensus 383 --------~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~W~~~~--~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 452 (489)
T 2jae_A 383 --------THRQRLAKAIAEGSEIHGEKYTRDISSSFSGSWRRTK--YSESAWANWAGSGGSHGGAATPEYEKLLEPVDK 452 (489)
T ss_dssp --------CHHHHHHHHHHHHHHHHCGGGGSSEEEEEEEEGGGST--TTSCSSCEETTC-------CCHHHHHHTSCBTT
T ss_pred --------CHHHHHHHHHHHHHHHcCcchhhhccccEEEEcCCCC--CCCCcchhcccccCCCcccchhhHHHHhCCCCc
Confidence 4677888888888876543 2456677789997642 111110 01 12234579
Q ss_pred eEEeeCCC--CCCChhHHHHHHHHHHHHHHHHhc
Q 024514 233 LAICGDFC--VSPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 233 l~~~GDw~--~g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
|++||+++ .++.+++|+.||..+|++|+..+.
T Consensus 453 l~faG~~~~~~~~~v~gAi~sg~~aA~~i~~~l~ 486 (489)
T 2jae_A 453 IYFAGDHLSNAIAWQHGALTSARDVVTHIHERVA 486 (489)
T ss_dssp EEECSGGGBSSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeEHHhccCccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987 588999999999999999998764
No 17
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.29 E-value=7.5e-06 Score=81.12 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=93.6
Q ss_pred hHHHHhccCCCcceeeEeeccCCCCCC-----CCCcceEecC--CCceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhH
Q 024514 96 DLAVKLEEIPVNPCFALMLAFSEPLSS-----IPVKGFSFQD--SEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVI 168 (266)
Q Consensus 96 ~l~~~l~~v~y~p~~~l~l~~~~~~~~-----~p~~g~~~~~--~~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~ 168 (266)
...++++.+.|.+...+.+.|+++-.. ..+.|.+.+. ...+..+..+++.++. ...++.......+....
T Consensus 600 ~~~~ai~~l~~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~p~g~---~~vL~~~i~G~~a~~l~ 676 (776)
T 4gut_A 600 KKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKK---HSVLMSVIAGEAVASVR 676 (776)
T ss_dssp HHHHHHHHEEEECCEEEEEECSSCTTHHHHTTCSEEEECCSSGGGTTEEEEEEESCTTSC---SCEEEEEECTHHHHHHH
T ss_pred HHHHHHHhCCCeeEEEEEEecCcccccccCCCCceEEeecCCcCCCceEEEEecCCCCCC---ceEEEEEecchhHHHHH
Confidence 345677888899999999999986310 1222322221 1123334455543322 22444444444444332
Q ss_pred hhcCCCCCChhhHHHHHHHHHHHHHhcCCC--CCCCcEEeEeccCCCC---CCcc---cCCcc---CeeecC-CCCeEEe
Q 024514 169 AQTGLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWGSAF---PAAS---IAKEE---RCLWDV-KRRLAIC 236 (266)
Q Consensus 169 ~~~~~~~~~~~~~~~v~~~l~~~~~~l~~~--l~~p~~~~~hRW~~A~---p~~~---~~~~~---~~~~~~-~~~l~~~ 236 (266)
+. +++++.+.+++.|..+.+. .+.|....++||...- -.+. .|... ..+..+ ..+|++|
T Consensus 677 ~l---------sdeel~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~grL~FA 747 (776)
T 4gut_A 677 TL---------DDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFA 747 (776)
T ss_dssp TS---------CHHHHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBTTTEEEC
T ss_pred cC---------CHHHHHHHHHHHHHHHhCcccccCcceEEEecCCCCCccCCCCCccCCCCchhHHHHHhCcCCCcEEEE
Confidence 32 5788889999999887543 4568888999997531 1111 11100 011122 4689999
Q ss_pred eCCCC---CCChhHHHHHHHHHHHHHHH
Q 024514 237 GDFCV---SPNVEGAILSGLDAASKLTE 261 (266)
Q Consensus 237 GDw~~---g~~vE~A~~SG~~~A~~l~~ 261 (266)
|+++. .+.+|||++||.++|++|++
T Consensus 748 GE~Ts~~~~gtveGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 748 GEATNRHFPQTVTGAYLSGVREASKIAA 775 (776)
T ss_dssp SGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred ehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence 99986 47899999999999999975
No 18
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=98.15 E-value=9.7e-07 Score=82.41 Aligned_cols=82 Identities=11% Similarity=0.217 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHhcCCCC--CCCcEEeEeccCCCCCCcccCCccCe--e--ecCCCCeEEee---CCCCC-CChhHHH
Q 024514 180 TLKKVAEEMFQEFQGTGLSI--PLPIFRKAHRWGSAFPAASIAKEERC--L--WDVKRRLAICG---DFCVS-PNVEGAI 249 (266)
Q Consensus 180 ~~~~v~~~l~~~~~~l~~~l--~~p~~~~~hRW~~A~p~~~~~~~~~~--~--~~~~~~l~~~G---Dw~~g-~~vE~A~ 249 (266)
+++++.+..++.+.++++.. +.+....++||.+|.|++..++.+.. + ....++|++|| .|-+- ++++.|+
T Consensus 386 ~de~l~~~~~~~L~~~~~i~~~~~i~~~~v~r~~~ayP~y~~~~~~~~~~~~~~l~~~~l~~~GR~g~~~Y~~~n~D~a~ 465 (513)
T 4gde_A 386 NQETILADCIQGLVNTEMLKPTDEIVSTYHRRFDHGYPTPTLEREGTLTQILPKLQDKDIWSRGRFGSWRYEVGNQDHSF 465 (513)
T ss_dssp CTTTHHHHHHHHHHHTTSSCTTCEEEEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTEEECSTTTTCCGGGCSHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCccceEEEEEEECCCeecccCHhHHHHHHHHHHHHhhcCcEEecCCcccCcCCCCHHHHH
Confidence 56778888888888775432 33567889999999999998764321 1 11236999999 45443 5899999
Q ss_pred HHHHHHHHHHHH
Q 024514 250 LSGLDAASKLTE 261 (266)
Q Consensus 250 ~SG~~~A~~l~~ 261 (266)
+||+.+|+.|+.
T Consensus 466 ~~g~~aa~~I~~ 477 (513)
T 4gde_A 466 MLGVEAVDNIVN 477 (513)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999999986
No 19
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=98.09 E-value=8.2e-05 Score=72.36 Aligned_cols=153 Identities=14% Similarity=0.193 Sum_probs=93.5
Q ss_pred HHHHhccCCCcceeeEeeccCCCCCCC--CCcceEecCC--CceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhcC
Q 024514 97 LAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQDS--EVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQTG 172 (266)
Q Consensus 97 l~~~l~~v~y~p~~~l~l~~~~~~~~~--p~~g~~~~~~--~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~~ 172 (266)
..++++.+.|.+...+.+.|+++-... ...|.+.+.. ...-++.+++++ . ..++.......+.. ++..
T Consensus 476 k~~Ai~~l~~g~~~KV~l~f~~~fW~~~~~~~G~l~~~~~~~~~~~~~~~~~~---~---~vL~~~~~G~~a~~-~~~l- 547 (662)
T 2z3y_A 476 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYK---A---PILLALVAGEAAGI-MENI- 547 (662)
T ss_dssp HHHHHHHSEECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTTEEEEEECCSS---S---SEEEEEECTHHHHH-HTTS-
T ss_pred HHHHHHhCCccceeEEEEEcCcccccCCCCceeeecCCCCCCCceeEEEeCCC---C---CEEEEEeccHhHHH-HHhC-
Confidence 355688899999999999999874211 2233332211 122335556542 1 24444444444443 3221
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCC--CCCCcEEeEeccCCC------CCCcccCCccC---ee-------------ec
Q 024514 173 LQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWGSA------FPAASIAKEER---CL-------------WD 228 (266)
Q Consensus 173 ~~~~~~~~~~~v~~~l~~~~~~l~~~--l~~p~~~~~hRW~~A------~p~~~~~~~~~---~~-------------~~ 228 (266)
+++++.+.+++.|+++.+. .+.|....++||... ......|.... .+ ..
T Consensus 548 -------sdee~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~ 620 (662)
T 2z3y_A 548 -------SDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQ 620 (662)
T ss_dssp -------CHHHHHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------
T ss_pred -------CHHHHHHHHHHHHHHHhCCcccCCCceeEEEEECCCCCCCcccccCCCCCchhhHHHHhCcCccccccccccC
Confidence 5678888888888876442 356888899999763 11111121000 01 12
Q ss_pred CCCCeEEeeCCCC---CCChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCV---SPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~---g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
+..+|++||+++. .+.+|||++||..+|++|++.+.
T Consensus 621 ~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~~~~ 659 (662)
T 2z3y_A 621 PIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFL 659 (662)
T ss_dssp CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHHHHcc
Confidence 2368999999875 37999999999999999998763
No 20
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=98.02 E-value=1.5e-05 Score=74.33 Aligned_cols=152 Identities=14% Similarity=0.149 Sum_probs=89.9
Q ss_pred hHHHHhccCCCcceeeEeeccCCCCC-CCCC-cceEecCCCceEEEEeCCCC-CCCCCCCCcEEEEeChHHHHHhHhhcC
Q 024514 96 DLAVKLEEIPVNPCFALMLAFSEPLS-SIPV-KGFSFQDSEVLSWAHCDSSK-PGRSANSERWVLHSTADYARTVIAQTG 172 (266)
Q Consensus 96 ~l~~~l~~v~y~p~~~l~l~~~~~~~-~~p~-~g~~~~~~~~l~wi~~~ssK-pgr~~~~~~~vl~ss~~~s~~~~~~~~ 172 (266)
...++++++.|.+...+.+.|+++.. ...+ .++...+ ....++...+.. |.. ...++.......+. .++.
T Consensus 311 ~~~~ai~~l~~~~~~kv~l~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~s~~~p~g---~~~L~~~~~g~~a~-~~~~-- 383 (498)
T 2iid_A 311 KKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTD-LPSRFIYYPNHNFTNG---VGVIIAYGIGDDAN-FFQA-- 383 (498)
T ss_dssp HHHHHHHHCCEECEEEEEEEESSCGGGGGTCCSSEEEES-STTCEEECCSSCCTTS---CEEEEEEEEHHHHH-TTTT--
T ss_pred HHHHHHHhCCCcceeEEEEEeCCCCccCCCccCCcccCC-CCcceEEECCCCCCCC---CcEEEEEeCCccHh-hhhc--
Confidence 45677889999999999999998631 0111 2222222 234556665533 332 12333332222222 1221
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCC------cEEeEeccCCCCCCcccCCc----c-------CeeecCCCCeEE
Q 024514 173 LQKPSEATLKKVAEEMFQEFQGTGLSIPLP------IFRKAHRWGSAFPAASIAKE----E-------RCLWDVKRRLAI 235 (266)
Q Consensus 173 ~~~~~~~~~~~v~~~l~~~~~~l~~~l~~p------~~~~~hRW~~A~p~~~~~~~----~-------~~~~~~~~~l~~ 235 (266)
.+++++.+.+++.|.++.+ ++.+ ....+++|.. +++..|+- + ..+..+..+|++
T Consensus 384 ------~~~~~~~~~~l~~L~~~~g-~~~~~~~~~~~~~~~~~W~~--~p~~~G~~~~~~~~~~~~~~~~l~~p~~~l~f 454 (498)
T 2iid_A 384 ------LDFKDCADIVFNDLSLIHQ-LPKKDIQSFCYPSVIQKWSL--DKYAMGGITTFTPYQFQHFSDPLTASQGRIYF 454 (498)
T ss_dssp ------SCHHHHHHHHHHHHHHHHT-CCHHHHHHHEEEEEEEEGGG--CTTTCSSEECCCTTHHHHHHHHHHCCBTTEEE
T ss_pred ------CCHHHHHHHHHHHHHHHcC-CChhhhhhhcCccEEEecCC--CCCCCceeeecCCcchHHHHHHHhCCCCcEEE
Confidence 1467788888888887643 1211 2356899975 22222221 0 012235679999
Q ss_pred eeCCCC--CCChhHHHHHHHHHHHHHHHHh
Q 024514 236 CGDFCV--SPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 236 ~GDw~~--g~~vE~A~~SG~~~A~~l~~~l 263 (266)
||+++. .+.+++|++||..+|++|+..+
T Consensus 455 AGe~t~~~~g~~~GAi~SG~raA~~i~~~l 484 (498)
T 2iid_A 455 AGEYTAQAHGWIDSTIKSGLRAARDVNLAS 484 (498)
T ss_dssp CSGGGSSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEcccccCCcCHHHHHHHHHHHHHHHHHHh
Confidence 999873 4689999999999999998876
No 21
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=98.01 E-value=9.3e-05 Score=73.96 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=92.9
Q ss_pred HHHHhccCCCcceeeEeeccCCCCCCC--CCcceEecC---CCceEEEEeCCCCCCCCCCCCcEEEEeChHHHHHhHhhc
Q 024514 97 LAVKLEEIPVNPCFALMLAFSEPLSSI--PVKGFSFQD---SEVLSWAHCDSSKPGRSANSERWVLHSTADYARTVIAQT 171 (266)
Q Consensus 97 l~~~l~~v~y~p~~~l~l~~~~~~~~~--p~~g~~~~~---~~~l~wi~~~ssKpgr~~~~~~~vl~ss~~~s~~~~~~~ 171 (266)
..++++.+.|.++..+.+.|+++.... ...|++.+. ...+. +.+++.+ . ..++.......+......
T Consensus 647 k~~AI~~l~~g~v~KV~L~F~~~fW~~~~~~fG~l~~~~~~~~~l~-~~~~~~~---~---pvLl~~v~G~~a~~l~~l- 718 (852)
T 2xag_A 647 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELF-LFWNLYK---A---PILLALVAGEAAGIMENI- 718 (852)
T ss_dssp HHHHHHHSEECCCEEEEEECSSCCSCTTCCEEEECCSSSTTTTTTC-EEEECSS---S---SEEEEEECHHHHHHGGGS-
T ss_pred HHHHHHcCCccceEEEEEEcCCcccCCCCCeeeeeccccCCCCceE-EEecCCC---C---CEEEEEecCcCHHHHhcC-
Confidence 345688899999999999999874211 223333221 12232 3344432 1 244444444444432222
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCC--CCCCcEEeEeccCCC------CCCcccCCccC---ee-------------e
Q 024514 172 GLQKPSEATLKKVAEEMFQEFQGTGLS--IPLPIFRKAHRWGSA------FPAASIAKEER---CL-------------W 227 (266)
Q Consensus 172 ~~~~~~~~~~~~v~~~l~~~~~~l~~~--l~~p~~~~~hRW~~A------~p~~~~~~~~~---~~-------------~ 227 (266)
+++++.+.+++.|..+++. .+.|....++||... ......|.... .+ .
T Consensus 719 --------sdeel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~~ 790 (852)
T 2xag_A 719 --------SDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAP 790 (852)
T ss_dssp --------CHHHHHHHHHHHHHHHHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTCC
T ss_pred --------CHHHHHHHHHHHHHHHhCccccCCceEEEEEecCCCCCcCccccccCCCcchhhHHHHhCcccccccccccc
Confidence 5678888888888876442 356888999999762 21111121100 00 1
Q ss_pred cCCCCeEEeeCCCC---CCChhHHHHHHHHHHHHHHHHh
Q 024514 228 DVKRRLAICGDFCV---SPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 228 ~~~~~l~~~GDw~~---g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.+..+|+|||+++. .+.+|||++||..+|++|+..+
T Consensus 791 ~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~l 829 (852)
T 2xag_A 791 QPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF 829 (852)
T ss_dssp CCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 23368999999875 4799999999999999999876
No 22
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=97.70 E-value=6.9e-05 Score=69.72 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=27.8
Q ss_pred CCCCeEEeeCCCC-CCChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCV-SPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~-g~~vE~A~~SG~~~A~~l~~~l 263 (266)
+-++|++||||.. |++|++|+.||..+|++|++.|
T Consensus 456 ~i~gLyl~G~~t~pG~Gv~ga~~SG~~aA~~il~dL 491 (501)
T 4dgk_A 456 TITNLYLVGAGTHPGAGIPGVIGSAKATAGLMLEDL 491 (501)
T ss_dssp CCTTEEECCCH------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 4579999999986 6899999999999999999877
No 23
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=97.57 E-value=6.1e-05 Score=61.42 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhcC-CCCCCCc-EE--eEeccCC---CCCCcc---cCCcc---CeeecCCCCeEEeeCCCC--CCCh
Q 024514 181 LKKVAEEMFQEFQGTG-LSIPLPI-FR--KAHRWGS---AFPAAS---IAKEE---RCLWDVKRRLAICGDFCV--SPNV 245 (266)
Q Consensus 181 ~~~v~~~l~~~~~~l~-~~l~~p~-~~--~~hRW~~---A~p~~~---~~~~~---~~~~~~~~~l~~~GDw~~--g~~v 245 (266)
++++.+.+++.|.++. ... .+. .. ..++|.. +.-.+. .|... ..+..+..+|++||+.+. .+.|
T Consensus 56 ~~e~~~~~l~~L~~~~g~~~-~~~~~~~~~~~~W~~dp~~~Ga~s~~~pg~~~~~~~~l~~p~grl~FAGe~ts~~~g~~ 134 (181)
T 2e1m_C 56 DAERYGYALENLQSVHGRRI-EVFYTGAGQTQSWLRDPYACGEAAVYTPHQMTAFHLDVVRPEGPVYFAGEHVSLKHAWI 134 (181)
T ss_dssp TTTTHHHHHHHHHHHHCGGG-GGTEEEEEEEEESSSCTTTSSSEECCCTTHHHHHHHHHHSCBTTEEECSGGGTTSTTSH
T ss_pred HHHHHHHHHHHHHHHhCCCc-HhhccCcceecccCCCCCCCCcccCcCCCchHHHHHHHhCCCCcEEEEEHHHcCCccCH
Confidence 3455556666666553 233 333 45 7899954 221111 11100 112345679999999876 7899
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 024514 246 EGAILSGLDAASKLTEIL 263 (266)
Q Consensus 246 E~A~~SG~~~A~~l~~~l 263 (266)
|||++||..+|++|+..+
T Consensus 135 eGAl~SG~raA~~i~~~l 152 (181)
T 2e1m_C 135 EGAVETAVRAAIAVNEAP 152 (181)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999998865
No 24
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=96.79 E-value=0.028 Score=52.47 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=31.3
Q ss_pred CCCCeEEeeCCCC---CCChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCV---SPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~---g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
+..+|++||+.+. .+.|+||++||.++|++|++.+.
T Consensus 470 ~~~rl~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~~~ 508 (516)
T 1rsg_A 470 QDSRIRFAGEHTIMDGAGCAYGAWESGRREATRISDLLK 508 (516)
T ss_dssp SSSSEEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEeccccccCCCccchhHHHHHHHHHHHHHHHhh
Confidence 5679999999873 47999999999999999998763
No 25
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=95.83 E-value=0.0028 Score=57.45 Aligned_cols=79 Identities=10% Similarity=0.109 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCcEEeEeccCC----CCCCcccCCccCe-eecCCCCeEEeeCCCCCCChhHHHHHHHH
Q 024514 180 TLKKVAEEMFQEFQGTGLSIPLPIFRKAHRWGS----AFPAASIAKEERC-LWDVKRRLAICGDFCVSPNVEGAILSGLD 254 (266)
Q Consensus 180 ~~~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~----A~p~~~~~~~~~~-~~~~~~~l~~~GDw~~g~~vE~A~~SG~~ 254 (266)
+.+++.+.+++.|..++.. .+.....+.|.+ +.+++..|+.... ......+|++||+|+..+..|+|++||+.
T Consensus 340 ~~~~~~~~v~~~l~~l~~~--~~~~~~~~~w~~~p~~~~~~~~~G~~~~~~~~~~~~~l~~aG~~~~~g~~e~a~~Sg~~ 417 (424)
T 2b9w_A 340 TQEECRQMVLDDMETFGHP--VEKIIEEQTWYYFPHVSSEDYKAGWYEKVEGMQGRRNTFYAGEIMSFGNFDEVCHYSKD 417 (424)
T ss_dssp CHHHHHHHHHHHHHHTTCC--EEEEEEEEEEEEEEECCHHHHHTTHHHHHHHTTTGGGEEECSGGGSCSSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCc--ccccccccceeeeeccCHHHHhccHHHHHHHHhCCCCceEeccccccccHHHHHHHHHH
Confidence 4677888888888876532 222233456653 2222222210000 11233689999999988899999999999
Q ss_pred HHHHHH
Q 024514 255 AASKLT 260 (266)
Q Consensus 255 ~A~~l~ 260 (266)
+|++|+
T Consensus 418 aA~~~l 423 (424)
T 2b9w_A 418 LVTRFF 423 (424)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999875
No 26
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=94.97 E-value=0.046 Score=49.33 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=43.7
Q ss_pred HHHHhcCCCCCCCcEEeEeccCC---CC---CCcccCCcc---CeeecCCCCeEEee-CCC--CCCChhHHHHHHHHHHH
Q 024514 190 QEFQGTGLSIPLPIFRKAHRWGS---AF---PAASIAKEE---RCLWDVKRRLAICG-DFC--VSPNVEGAILSGLDAAS 257 (266)
Q Consensus 190 ~~~~~l~~~l~~p~~~~~hRW~~---A~---p~~~~~~~~---~~~~~~~~~l~~~G-Dw~--~g~~vE~A~~SG~~~A~ 257 (266)
+.++.+.+... |.....++|.. +. .....|... +.+..+..+|++|| ++. ..+.+|||++||.++|+
T Consensus 342 ~~l~~~~~~~~-~~~~~~~~W~~d~~~~G~~~~~~~g~~~~~~~~l~~p~g~~~fAGe~t~~~~~g~~~GA~~sg~raa~ 420 (431)
T 3k7m_X 342 DAVLYYLPEVE-VLGIDYHDWIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGSDVSLEFPGYIEGALETAECAVN 420 (431)
T ss_dssp HHHHHHCTTCE-EEEEECCCTTTCTTTSSSSCCCCTTTTTTSSGGGGSCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCC-ccEeEecccCCCCCCCCCCCCcCCCCCcccHHHHhCCCCcEEEEehhhhccCCeEehHHHHHHHHHHH
Confidence 34444544432 66666799964 11 111112111 12334567999999 444 34789999999999999
Q ss_pred HHHH
Q 024514 258 KLTE 261 (266)
Q Consensus 258 ~l~~ 261 (266)
+|+.
T Consensus 421 ~i~~ 424 (431)
T 3k7m_X 421 AILH 424 (431)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9975
No 27
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=90.60 E-value=0.16 Score=45.64 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=30.4
Q ss_pred CCCeEEeeCC--CCCCChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDF--CVSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw--~~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.++|.+||.| +.+..+|+|+.||+++|++|+..+
T Consensus 335 ~~~~~~~Gr~~~~~~~~~~d~i~sa~~~a~~~~~~~ 370 (384)
T 2bi7_A 335 ETNITFVGRLGTYRYLDMDVTIAEALKTAEVYLNSL 370 (384)
T ss_dssp CSSEEECHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEccccEEEEeCCHHHHHHHHHHHHHHHhhhh
Confidence 3799999997 568899999999999999998865
No 28
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=89.38 E-value=0.13 Score=44.78 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=31.6
Q ss_pred cCCCCeEEeeCCCC--------CCChhHHHHHHHHHHHHHHHHhcc
Q 024514 228 DVKRRLAICGDFCV--------SPNVEGAILSGLDAASKLTEILSC 265 (266)
Q Consensus 228 ~~~~~l~~~GDw~~--------g~~vE~A~~SG~~~A~~l~~~l~~ 265 (266)
...++|++|||... |+.+-+++.||..+|+.|+++|++
T Consensus 281 t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~laa 326 (326)
T 3fpz_A 281 AGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFAA 326 (326)
T ss_dssp TTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 34579999999642 567888999999999999999874
No 29
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=89.15 E-value=0.32 Score=43.28 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=28.9
Q ss_pred CCCeEEeeCC--CCCCChhHHHHHHHHHHHHHHH
Q 024514 230 KRRLAICGDF--CVSPNVEGAILSGLDAASKLTE 261 (266)
Q Consensus 230 ~~~l~~~GDw--~~g~~vE~A~~SG~~~A~~l~~ 261 (266)
.+++.+||-| +.+..+|+|+.||+++|++|++
T Consensus 332 ~~~~~~~Gr~~~~~y~~~~d~i~sa~~~a~~~~~ 365 (367)
T 1i8t_A 332 EDKVIFGGRLAEYKYYDMHQVISAALYQVKNIMS 365 (367)
T ss_dssp CTTEEECSTTTTTSCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEcccceeeEecCHHHHHHHHHHHHHHHhc
Confidence 4789999998 7889999999999999999864
No 30
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=88.74 E-value=0.21 Score=45.02 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=29.5
Q ss_pred CCeEEeeCC--CCCCChhHHHHHHHHHHHHHHHHh
Q 024514 231 RRLAICGDF--CVSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 231 ~~l~~~GDw--~~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
++|.+||+| +.+..+|+|+.||+++|++|....
T Consensus 353 ~~v~~~G~~~~~~~~~~e~~i~sa~~~a~~l~~~~ 387 (399)
T 1v0j_A 353 SKVLFGGRLGTYQYLDMHMAIASALNMYDNVLAPH 387 (399)
T ss_dssp HCEEECHHHHHTCCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCEEEccceEEEEecCHHHHHHHHHHHHHHHhhhh
Confidence 699999997 777899999999999999997643
No 31
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=78.07 E-value=1.9 Score=42.17 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=30.5
Q ss_pred CCCCeEEeeCCCC--CCChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCV--SPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~--g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
+..+|++|||.+. ++=+|||+.||..++..|...+.
T Consensus 643 ~~gri~fAGe~~S~~~GWieGAl~Sa~~Aa~~i~~~~~ 680 (721)
T 3ayj_A 643 LDNRFFIASDSYSHLGGWLEGAFMSALNAVAGLIVRAN 680 (721)
T ss_dssp TCCCEEECSGGGSSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEeehhhccCCceehHHHHHHHHHHHHHHHHhc
Confidence 4578999999764 56799999999999999988663
No 32
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=69.57 E-value=3.6 Score=34.89 Aligned_cols=38 Identities=18% Similarity=0.074 Sum_probs=30.3
Q ss_pred cCCCCeEEeeCCCCC-C-ChhHHHHHHHHHHHHHHHHhcc
Q 024514 228 DVKRRLAICGDFCVS-P-NVEGAILSGLDAASKLTEILSC 265 (266)
Q Consensus 228 ~~~~~l~~~GDw~~g-~-~vE~A~~SG~~~A~~l~~~l~~ 265 (266)
...++|++|||.... . .+..|+..|..+|+.+..+|..
T Consensus 268 Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~~ 307 (312)
T 4gcm_A 268 TSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEH 307 (312)
T ss_dssp CSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 345789999997753 3 5788999999999999887753
No 33
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=67.92 E-value=4.7 Score=32.88 Aligned_cols=35 Identities=17% Similarity=0.005 Sum_probs=29.9
Q ss_pred CCCCeEEeeCCCCCCChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCVSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|+++||-...+....|+.+|..+|+.|...+
T Consensus 197 ~~p~iya~G~~a~~g~~~~~~~~g~~~a~~i~~~l 231 (232)
T 2cul_A 197 RLEGLYAVGLCVREGDYARMSEEGKRLAEHLLHEL 231 (232)
T ss_dssp TSBSEEECGGGTSCCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccceeeeecccCccHHHHHHHHHHHHHHHHhhc
Confidence 56899999997744578888999999999998765
No 34
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=66.70 E-value=6.2 Score=33.18 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=30.5
Q ss_pred cCCCCeEEeeCCCCCC--ChhHHHHHHHHHHHHHHHHhcc
Q 024514 228 DVKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEILSC 265 (266)
Q Consensus 228 ~~~~~l~~~GDw~~g~--~vE~A~~SG~~~A~~l~~~l~~ 265 (266)
...++|++|||-..++ .+--|.-+|..+|..+..+|.+
T Consensus 274 Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~yL~~ 313 (314)
T 4a5l_A 274 TSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCEKWLQT 313 (314)
T ss_dssp CSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 3457899999987765 4677888999999999888854
No 35
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=65.90 E-value=6 Score=32.76 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=30.5
Q ss_pred CCCCeEEeeCCCC-CCChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCV-SPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~-g~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|++|||... ...+..|+..|..+|..|...+
T Consensus 256 ~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~~l 291 (297)
T 3fbs_A 256 TARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSI 291 (297)
T ss_dssp SSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeecCCchHHHHHHHHhHHHHHHHHHHHH
Confidence 4579999999776 5689999999999999998876
No 36
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=63.63 E-value=6.6 Score=33.89 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=28.5
Q ss_pred CCCeEEeeCCC------CCCChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFC------VSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~------~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++.++||.. .|.++.-|+.||..||+.|.+.+
T Consensus 276 ~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l 315 (397)
T 3oz2_A 276 MPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAI 315 (397)
T ss_dssp ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 35899999974 46689999999999999987765
No 37
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=63.13 E-value=8 Score=32.43 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=29.9
Q ss_pred CCCCeEEeeCCCCCC--ChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~--~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|+++||....+ .+..|+.+|..+|..|...+
T Consensus 268 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 304 (310)
T 1fl2_A 268 NVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL 304 (310)
T ss_dssp SSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHHHH
Confidence 457899999987654 78999999999999998876
No 38
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=62.81 E-value=8.6 Score=32.48 Aligned_cols=37 Identities=22% Similarity=0.068 Sum_probs=31.5
Q ss_pred cCCCCeEEeeCCCCC--CChhHHHHHHHHHHHHHHHHhc
Q 024514 228 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 228 ~~~~~l~~~GDw~~g--~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
...++|++|||-..+ ..+..|+.+|..+|..|...+.
T Consensus 297 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 335 (338)
T 3itj_A 297 TSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLT 335 (338)
T ss_dssp CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHHHHh
Confidence 345799999998753 6899999999999999998874
No 39
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=62.00 E-value=8.8 Score=32.11 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=30.5
Q ss_pred CCCCeEEeeCCCCC----CChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCVS----PNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~g----~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|+++||.... ..+..|+..|..+|+.|...+.
T Consensus 278 ~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 317 (323)
T 3f8d_A 278 SVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVT 317 (323)
T ss_dssp SSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHHH
Confidence 45789999997763 5899999999999999988763
No 40
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=61.52 E-value=4.1 Score=36.52 Aligned_cols=33 Identities=18% Similarity=0.076 Sum_probs=26.8
Q ss_pred CCCCeEEeeCC------CCCCChhHHHHHHHHHHHHHHH
Q 024514 229 VKRRLAICGDF------CVSPNVEGAILSGLDAASKLTE 261 (266)
Q Consensus 229 ~~~~l~~~GDw------~~g~~vE~A~~SG~~~A~~l~~ 261 (266)
.-++|++||+- ++|=.+..||.||..+++.+.+
T Consensus 362 ~~~gly~~GE~ldv~g~~GGynlq~a~~sg~~ag~~~~~ 400 (401)
T 2gqf_A 362 QVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR 400 (401)
T ss_dssp SSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEeEEeccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 56899999953 4455899999999999988753
No 41
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=61.18 E-value=9.8 Score=31.89 Aligned_cols=37 Identities=24% Similarity=0.180 Sum_probs=31.5
Q ss_pred CCCCeEEeeCCCCC--CChhHHHHHHHHHHHHHHHHhcc
Q 024514 229 VKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEILSC 265 (266)
Q Consensus 229 ~~~~l~~~GDw~~g--~~vE~A~~SG~~~A~~l~~~l~~ 265 (266)
..++|+++||...+ ..+..|...|..+|..|...+..
T Consensus 272 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 310 (311)
T 2q0l_A 272 NVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYLEH 310 (311)
T ss_dssp SSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHHHHhh
Confidence 45799999998764 47999999999999999887754
No 42
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=59.24 E-value=11 Score=31.91 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=31.3
Q ss_pred cCCCCeEEeeCCCCC--CChhHHHHHHHHHHHHHHHHhc
Q 024514 228 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 228 ~~~~~l~~~GDw~~g--~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
...++|+++||...+ ..+..|+..|..+|..|...+.
T Consensus 278 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 316 (319)
T 3cty_A 278 TSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYSDSI 316 (319)
T ss_dssp CSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHHHhh
Confidence 345789999998765 5789999999999999988774
No 43
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=58.98 E-value=9.1 Score=31.95 Aligned_cols=36 Identities=22% Similarity=0.087 Sum_probs=30.5
Q ss_pred CCCCeEEeeCCCC--CCChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCV--SPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~--g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|+++||... ...+..|+..|..+|..|...+.
T Consensus 275 ~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 312 (315)
T 3r9u_A 275 SVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMAYIE 312 (315)
T ss_dssp SSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeecccCCchhhhhhHHhhHHHHHHHHHHHHH
Confidence 4579999999763 35899999999999999988774
No 44
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=58.48 E-value=8.8 Score=34.75 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=29.9
Q ss_pred CCCCeEEeeCCCCCCChhHHHHHHHHHHHHHHH
Q 024514 229 VKRRLAICGDFCVSPNVEGAILSGLDAASKLTE 261 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~ 261 (266)
...+|++|||+.....+|+|+.++..++++|..
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 439 (453)
T 2bcg_G 407 SKDNIYLSRSYDASSHFESMTDDVKDIYFRVTG 439 (453)
T ss_dssp TTTSEEECCCCCSCSBSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEECCCCCccccHHHHHHHHHHHHHHHHC
Confidence 346899999999999999999999999999873
No 45
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=57.69 E-value=10 Score=31.91 Aligned_cols=36 Identities=17% Similarity=0.033 Sum_probs=30.6
Q ss_pred CCCCeEEeeCCCCC--CChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~g--~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|+++||.... ..+..|+.+|..+|..|...+.
T Consensus 277 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 314 (320)
T 1trb_A 277 SIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLD 314 (320)
T ss_dssp SSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEcccccCCcchhhhhhhccHHHHHHHHHHHHH
Confidence 45789999998765 4789999999999999988774
No 46
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=56.95 E-value=10 Score=32.05 Aligned_cols=35 Identities=20% Similarity=0.034 Sum_probs=29.9
Q ss_pred CCCCeEEeeCCCCC--CChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~g--~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|++|||.... ..+..|+..|..+|..|...+
T Consensus 286 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 322 (333)
T 1vdc_A 286 SVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYL 322 (333)
T ss_dssp SSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHHHHH
Confidence 45799999998765 578999999999999998766
No 47
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=56.37 E-value=13 Score=28.45 Aligned_cols=35 Identities=17% Similarity=-0.056 Sum_probs=29.5
Q ss_pred CCCCeEEeeCCCCCC--ChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCVSP--NVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~--~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|+++||..... .+..|...|..+|+.|...+
T Consensus 134 ~~~~i~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 170 (180)
T 2ywl_A 134 SYPRVYAAGVARGKVPGHAIISAGDGAYVAVHLVSDL 170 (180)
T ss_dssp SSTTEEECGGGGTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeecccCcchhhHHHHHHhHHHHHHHHHHHh
Confidence 457899999987654 78899999999999998765
No 48
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=53.92 E-value=12 Score=34.22 Aligned_cols=35 Identities=26% Similarity=0.174 Sum_probs=30.2
Q ss_pred CCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|+++||...|+ .+-.|+..|..+|+.|..+|
T Consensus 408 s~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~~~L 443 (456)
T 2vdc_G 408 NMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAYA 443 (456)
T ss_dssp SSTTEEECGGGGSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeccccCCchHHHHHHHHHHHHHHHHHHHh
Confidence 346899999987765 68999999999999998876
No 49
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=53.23 E-value=15 Score=31.30 Aligned_cols=36 Identities=22% Similarity=0.098 Sum_probs=29.8
Q ss_pred cCCCCeEEeeCCCCC--CChhHHHHHHHHHHHHHHHHh
Q 024514 228 DVKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 228 ~~~~~l~~~GDw~~g--~~vE~A~~SG~~~A~~l~~~l 263 (266)
...++|+++||.... ..+..|+.+|..+|..|...+
T Consensus 278 t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~~l 315 (335)
T 2a87_A 278 TSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWL 315 (335)
T ss_dssp CSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHHHh
Confidence 345789999998765 478899999999999988765
No 50
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=50.90 E-value=19 Score=30.40 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=29.9
Q ss_pred CCCCeEEeeCCCCC--CChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCVS--PNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~g--~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|+++||.... ..+..|...|..+|+.|...+
T Consensus 275 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 311 (325)
T 2q7v_A 275 NIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQL 311 (325)
T ss_dssp SSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999998764 578999999999999998766
No 51
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=50.02 E-value=15 Score=30.88 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=29.6
Q ss_pred CCCCeEEeeCCC---CC-CChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFC---VS-PNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~---~g-~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|++|||.. .+ ..+..|+..|..+|+.|...+.
T Consensus 276 ~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 315 (332)
T 3lzw_A 276 NIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAYMD 315 (332)
T ss_dssp SSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHHhhC
Confidence 457999999976 23 3689999999999999988763
No 52
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=49.16 E-value=14 Score=31.32 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=30.5
Q ss_pred eecCCCCeEEeeC--CCC--CCChhHHHHHHHHHHHHHHHHhc
Q 024514 226 LWDVKRRLAICGD--FCV--SPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 226 ~~~~~~~l~~~GD--w~~--g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
+....++|+++|| ... ...+..|...|..+|+.|...+.
T Consensus 310 ~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~ 352 (357)
T 4a9w_A 310 RALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYCA 352 (357)
T ss_dssp BBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 3345679999995 443 25788999999999999998774
No 53
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=44.29 E-value=11 Score=31.66 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=29.4
Q ss_pred cCCCCeEEeeCCCC-CC-ChhHHHHHHHHHHHHHHHHhc
Q 024514 228 DVKRRLAICGDFCV-SP-NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 228 ~~~~~l~~~GDw~~-g~-~vE~A~~SG~~~A~~l~~~l~ 264 (266)
...++|++|||-.. +. .+--|+-+|..+|..|..+|+
T Consensus 262 Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~ 300 (304)
T 4fk1_A 262 TSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDIT 300 (304)
T ss_dssp CSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 44578999999764 33 478899999999999988774
No 54
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=41.03 E-value=9.8 Score=34.26 Aligned_cols=30 Identities=27% Similarity=0.193 Sum_probs=23.8
Q ss_pred CCCCeEEee---C---CCCCCChhHHHHHHHHHHHH
Q 024514 229 VKRRLAICG---D---FCVSPNVEGAILSGLDAASK 258 (266)
Q Consensus 229 ~~~~l~~~G---D---w~~g~~vE~A~~SG~~~A~~ 258 (266)
.-++|++|| | |++|=.+..||.||..+++.
T Consensus 381 ~~~gLy~aGE~lD~~~~~GGynlq~a~stG~~ag~~ 416 (417)
T 3v76_A 381 EVPGLYFVGECVDVTGWLGGYNFQWAWASGFVAGQD 416 (417)
T ss_dssp TSTTEEECGGGBSEEECSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeEecccCCCCHHHHHHHHHHHHHhCc
Confidence 447999999 3 34455899999999988864
No 55
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=39.64 E-value=27 Score=32.14 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=29.3
Q ss_pred CCCeEEeeCCCCCC--ChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFCVSP--NVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~~g~--~vE~A~~SG~~~A~~l~~~l 263 (266)
.++|+++||....+ .+..|+.+|..+|..+...+
T Consensus 480 ~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~L 515 (521)
T 1hyu_A 480 VKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL 515 (521)
T ss_dssp STTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeecccCCCcceeeehHHhHHHHHHHHHHHH
Confidence 47999999987654 78999999999999998876
No 56
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=35.86 E-value=22 Score=33.35 Aligned_cols=81 Identities=9% Similarity=-0.010 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhc---CCCCCC---CcEEeEeccCCCCCCcccCCccCeeecCCCCeEEeeCCCC-CCChhHHHHHHH
Q 024514 181 LKKVAEEMFQEFQGT---GLSIPL---PIFRKAHRWGSAFPAASIAKEERCLWDVKRRLAICGDFCV-SPNVEGAILSGL 253 (266)
Q Consensus 181 ~~~v~~~l~~~~~~l---~~~l~~---p~~~~~hRW~~A~p~~~~~~~~~~~~~~~~~l~~~GDw~~-g~~vE~A~~SG~ 253 (266)
++.+.+.|.+.+..+ .+.... ..|.-.-| ++-|....- .+.+....-.+|+.|||--+ .+++-.|..+|+
T Consensus 456 p~~~~~~l~e~~~~~~~~~~g~~~~~~~l~g~e~~--~ssp~ri~~-~~~~~~~~~~gly~~GegaG~a~gi~~Aa~~G~ 532 (549)
T 3nlc_A 456 PPFAVEAIREAIPAFDRKIKGFASEDGLLTGVETR--TSSPVCIKR-GKDFQSVNLKGFYPAGEGAGYAGGILSAGIDGI 532 (549)
T ss_dssp CHHHHHHHHHHHHHHHTTSTTTTCTTCEEEEEECC--SSCSEECCC-TTTTSCTTCBTEEECHHHHTSCCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhccCcCCCCCCcEEEEEeec--cCCceeEEE-CCCceECCcCCEEEccccCChhhHHHHHHHHHH
Confidence 356777776666644 222121 22222333 555422111 11222224579999999543 478999999999
Q ss_pred HHHHHHHHHhc
Q 024514 254 DAASKLTEILS 264 (266)
Q Consensus 254 ~~A~~l~~~l~ 264 (266)
.+|+.|+..+.
T Consensus 533 ~~a~~i~~~~~ 543 (549)
T 3nlc_A 533 KVAEAVARDIV 543 (549)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988763
No 57
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=35.11 E-value=39 Score=28.34 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=28.4
Q ss_pred CCCCeEEeeCCCCC----CChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCVS----PNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~g----~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|+++||.... ..+..|+..|..+|+.|...+
T Consensus 278 ~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l 316 (335)
T 2zbw_A 278 SIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAAYA 316 (335)
T ss_dssp SSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHHHh
Confidence 35789999997642 367889999999999998765
No 58
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=30.75 E-value=46 Score=28.36 Aligned_cols=36 Identities=11% Similarity=0.068 Sum_probs=28.6
Q ss_pred CCCCeEEeeCCCCC----CChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCVS----PNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~g----~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|+++||.... ..+..|+..|..+|+.|...+.
T Consensus 289 ~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 328 (360)
T 3ab1_A 289 SVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSYIK 328 (360)
T ss_dssp SSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHhhcC
Confidence 45799999997642 3578899999999999987653
No 59
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=30.34 E-value=52 Score=29.95 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=29.6
Q ss_pred CCCeEEeeCCCCCCChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFCVSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.++|+++||-.....+..|+..|..+|+.|...+
T Consensus 343 ~~~vya~GD~~~~~~~~~A~~~g~~aa~~i~~~l 376 (493)
T 1y56_A 343 KDGIYVAGSAVSIKPHYANYLEGKLVGAYILKEF 376 (493)
T ss_dssp ETTEEECSTTTCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeccCCccCHHHHHHHHHHHHHHHHHHc
Confidence 4689999998776789999999999999998765
No 60
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=30.21 E-value=19 Score=34.58 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=30.2
Q ss_pred CCCeEEeeCCCCCCChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFCVSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.++|+++||......+..|+..|..+|+.|...+
T Consensus 641 ~~~VyaiGD~~~~~~~~~A~~~g~~aa~~i~~~l 674 (690)
T 3k30_A 641 IASVRGIGDAWAPGTIAAAVWSGRRAAEEFDAVL 674 (690)
T ss_dssp CSEEEECGGGTSCBCHHHHHHHHHHHHHHTTCCC
T ss_pred CCCEEEEeCCCchhhHHHHHHHHHHHHHHHHhhc
Confidence 4789999999888899999999999999987654
No 61
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=30.20 E-value=29 Score=28.96 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=29.0
Q ss_pred CCeEEeeCCC--------CCCChhHHHHHHHHHHHHHHHHhc
Q 024514 231 RRLAICGDFC--------VSPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 231 ~~l~~~GDw~--------~g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
+++++|||-. .|+.+.+++.||..+|..+.+.|.
T Consensus 234 p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~~l~ 275 (284)
T 1rp0_A 234 PGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALG 275 (284)
T ss_dssp TTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHHHhh
Confidence 6899999754 367899999999999999998774
No 62
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=29.44 E-value=32 Score=30.86 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=27.2
Q ss_pred CCCCeEEeeC------CCCCCChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGD------FCVSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GD------w~~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.-++|++||- +++|-.+-.||.||..+++.+....
T Consensus 403 ~i~GLy~aGEv~~v~g~~GG~~l~~a~~~G~~Ag~~aa~~~ 443 (447)
T 2i0z_A 403 FTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAGENA 443 (447)
T ss_dssp SSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeeccCccCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 3579999983 2334478999999999999887654
No 63
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=29.22 E-value=52 Score=29.36 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=27.9
Q ss_pred CCeEEeeCCC------CCCChhHHHHHHHHHHHHHHHHh
Q 024514 231 RRLAICGDFC------VSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 231 ~~l~~~GDw~------~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.++.++||.. .|.++.-|+.+|..||+.|...+
T Consensus 282 ~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l 320 (453)
T 3atr_A 282 NGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAF 320 (453)
T ss_dssp TTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 5899999974 46699999999999999987654
No 64
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=28.59 E-value=51 Score=30.86 Aligned_cols=33 Identities=21% Similarity=0.010 Sum_probs=28.5
Q ss_pred CCeEEeeCCCC------CCChhHHHHHHHHHHHHHHHHh
Q 024514 231 RRLAICGDFCV------SPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 231 ~~l~~~GDw~~------g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.++.++||..+ |-++.-|+.||..||+.|...+
T Consensus 347 ~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~ 385 (584)
T 2gmh_A 347 PGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQL 385 (584)
T ss_dssp TTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHH
Confidence 68999999764 5689999999999999998765
No 65
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=28.31 E-value=49 Score=28.79 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=29.3
Q ss_pred cCCCCeEEeeCCCCC----CChhHHHHHHHHHHHHHHHHh
Q 024514 228 DVKRRLAICGDFCVS----PNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 228 ~~~~~l~~~GDw~~g----~~vE~A~~SG~~~A~~l~~~l 263 (266)
...++|+.+||-+.+ .....|...|..+|+.|+..+
T Consensus 284 t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~~~l 323 (401)
T 3vrd_B 284 SLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVVALL 323 (401)
T ss_dssp SSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 345799999998754 256889999999999998765
No 66
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=28.16 E-value=63 Score=28.56 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=29.4
Q ss_pred CCCCeEEeeCCCCCC-------------ChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCVSP-------------NVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-------------~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|+++||-...+ ....|...|..+|+.|...+.
T Consensus 285 ~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~~g~~aa~ni~~~l~ 333 (430)
T 3h28_A 285 TYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIR 333 (430)
T ss_dssp SSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeeeccCCccCCCCCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 467999999976532 578899999999999988763
No 67
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=27.80 E-value=26 Score=31.79 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=28.4
Q ss_pred CCCeEEeeCCCCCCC--hhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFCVSPN--VEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~~g~~--vE~A~~SG~~~A~~l~~~l 263 (266)
.++|++|||-..|+. +..|...|..+|+.|...+
T Consensus 359 ~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~~l 394 (460)
T 1cjc_A 359 VPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDL 394 (460)
T ss_dssp CTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 479999999766653 6789999999999998765
No 68
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=26.91 E-value=58 Score=28.49 Aligned_cols=35 Identities=23% Similarity=0.104 Sum_probs=29.4
Q ss_pred CCCCeEEeeCCCC---CCChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCV---SPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~---g~~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|+++||-.. ...+..|...|..+|+.|...+
T Consensus 298 ~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 298 KYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp SCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4579999999764 3467889999999999998876
No 69
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=26.48 E-value=63 Score=28.66 Aligned_cols=35 Identities=11% Similarity=-0.131 Sum_probs=28.9
Q ss_pred CCCCeEEeeCCCCCC-------------ChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCVSP-------------NVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-------------~vE~A~~SG~~~A~~l~~~l 263 (266)
..++|+++||....+ ....|...|..+|+.|...+
T Consensus 296 ~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l 343 (437)
T 3sx6_A 296 KYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADL 343 (437)
T ss_dssp SCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 467999999976532 57789999999999998876
No 70
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=25.95 E-value=58 Score=29.57 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=27.6
Q ss_pred CCCCeEEeeCCCCCCC-hhHHHHHHHHHHHHHHH
Q 024514 229 VKRRLAICGDFCVSPN-VEGAILSGLDAASKLTE 261 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~~-vE~A~~SG~~~A~~l~~ 261 (266)
..++|+++||...++. ...|...|..+|+.|..
T Consensus 304 ~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 304 SVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGA 337 (492)
T ss_dssp SSTTEEECGGGGTSSCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCCCccHHHHHHHHHHHHHHHcC
Confidence 4579999999877654 55899999999999886
No 71
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=25.86 E-value=56 Score=32.77 Aligned_cols=36 Identities=8% Similarity=0.117 Sum_probs=30.8
Q ss_pred CCCCeEEeeCCCCCCChhHHHHHHHHHHHHHHHHhc
Q 024514 229 VKRRLAICGDFCVSPNVEGAILSGLDAASKLTEILS 264 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~~l~ 264 (266)
..++|+++||......+..|+..|..+|..|...+.
T Consensus 409 s~p~IyAaGD~a~~~~l~~A~~~G~~aA~~i~~~lg 444 (965)
T 2gag_A 409 AVANQHLAGAMTGRLDTASALSTGAATGAAAATAAG 444 (965)
T ss_dssp CCTTEEECGGGGTCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEecCCchhHHHHHHHHHHHHHHHHHHcC
Confidence 357899999987777788999999999999988664
No 72
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=25.75 E-value=21 Score=19.20 Aligned_cols=7 Identities=43% Similarity=1.232 Sum_probs=5.9
Q ss_pred eCCCCCC
Q 024514 237 GDFCVSP 243 (266)
Q Consensus 237 GDw~~g~ 243 (266)
||||.|.
T Consensus 17 gdwccgr 23 (32)
T 4b2v_A 17 GDWCCGR 23 (32)
T ss_dssp CCCCSSE
T ss_pred cchhhhH
Confidence 8999884
No 73
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=24.84 E-value=30 Score=31.31 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=28.1
Q ss_pred CCCCeEEeeCCCCCCC--hhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCVSPN--VEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~~--vE~A~~SG~~~A~~l~~~l 263 (266)
..++|+++||-..|+. +..|...|..+|+.|+..+
T Consensus 350 ~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~~l 386 (456)
T 1lqt_A 350 GSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNL 386 (456)
T ss_dssp TCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3479999999776653 5679999999999988765
No 74
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=23.37 E-value=67 Score=28.72 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=27.2
Q ss_pred CCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHH
Q 024514 229 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 261 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~ 261 (266)
..++|+++||...++ ....|+..|..+|+.|..
T Consensus 308 ~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g 341 (470)
T 1dxl_A 308 NVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAG 341 (470)
T ss_dssp SSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcC
Confidence 457899999987765 466799999999998865
No 75
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=23.15 E-value=61 Score=27.70 Aligned_cols=76 Identities=9% Similarity=0.033 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEeEeccCCCCCCcccCCccCeeec--CCCCeEEeeCCCCCCChhHHHHHHHHHHHHH
Q 024514 182 KKVAEEMFQEFQGTGLSIPLPIFRKAHRWGSAFPAASIAKEERCLWD--VKRRLAICGDFCVSPNVEGAILSGLDAASKL 259 (266)
Q Consensus 182 ~~v~~~l~~~~~~l~~~l~~p~~~~~hRW~~A~p~~~~~~~~~~~~~--~~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l 259 (266)
++..+.+++.+.++.+.+... ...+.|..-.|..+-+ .+.+-. ..+++++++. +.|.++.-|..+|..+|+.|
T Consensus 285 ~~~~~~l~~~~~~~~p~l~~~--~~~~~w~g~~~~t~d~--~p~ig~~~~~~~l~~~~G-~~g~G~~~a~~~g~~la~~i 359 (382)
T 1ryi_A 285 LGGLESVMKKAKTMLPAIQNM--KVDRFWAGLRPGTKDG--KPYIGRHPEDSRILFAAG-HFRNGILLAPATGALISDLI 359 (382)
T ss_dssp HHHHHHHHHHHHHHCGGGGGS--EEEEEEEEEEEECSSS--CCEEEEETTEEEEEEEEC-CSSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcCCC--ceeeEEEEecccCCCC--CcEeccCCCcCCEEEEEc-CCcchHHHhHHHHHHHHHHH
Confidence 344556666666654433222 2356675444443221 122221 1357887766 56789999999999999998
Q ss_pred HHH
Q 024514 260 TEI 262 (266)
Q Consensus 260 ~~~ 262 (266)
.+.
T Consensus 360 ~~~ 362 (382)
T 1ryi_A 360 MNK 362 (382)
T ss_dssp TTC
T ss_pred hCC
Confidence 653
No 76
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=22.79 E-value=65 Score=32.53 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=29.2
Q ss_pred CCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFCVSP-NVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~~l 263 (266)
.++|+++||...++ .+-.|+..|..+|+.|..+|
T Consensus 473 ~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~~~L 507 (1025)
T 1gte_A 473 EPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYI 507 (1025)
T ss_dssp STTEEECSGGGCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 47899999987754 67889999999999998765
No 77
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=22.60 E-value=30 Score=33.45 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=28.9
Q ss_pred CCCeEEeeCCCCCCChhHHHHHHHHHHHHHHHHh
Q 024514 230 KRRLAICGDFCVSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 230 ~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.++|+++||......+..|+..|..+|..|...+
T Consensus 666 ~~~VyAiGD~~~~~~~~~A~~~G~~aA~~i~~~l 699 (729)
T 1o94_A 666 IKGIYLIGDAEAPRLIADATFTGHRVAREIEEAN 699 (729)
T ss_dssp CCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCeEEEeCccchhhHHHHHHHHHHHHHHhhhhc
Confidence 3689999998776789999999999999886644
No 78
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=22.33 E-value=49 Score=29.05 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=28.0
Q ss_pred cCCCCeEEeeCCCC-----CCChhHHHHHHHHHHHHHHH
Q 024514 228 DVKRRLAICGDFCV-----SPNVEGAILSGLDAASKLTE 261 (266)
Q Consensus 228 ~~~~~l~~~GDw~~-----g~~vE~A~~SG~~~A~~l~~ 261 (266)
...++|+++||... ...+..|...|..+|+.|+.
T Consensus 255 t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g 293 (385)
T 3klj_A 255 TSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACG 293 (385)
T ss_dssp CSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence 34679999999764 35789999999999999875
No 79
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=22.33 E-value=69 Score=28.65 Aligned_cols=33 Identities=18% Similarity=0.027 Sum_probs=27.4
Q ss_pred CCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHH
Q 024514 229 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 261 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~ 261 (266)
..++|+++||...++ -...|...|..+|+.|..
T Consensus 300 ~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 300 NVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp SSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence 457899999987665 467899999999999875
No 80
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=21.74 E-value=64 Score=30.88 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=29.2
Q ss_pred CCCCeEEeeCCCCCCChhHHHHHHHHHHHHHHHHh
Q 024514 229 VKRRLAICGDFCVSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.-++|++||+-.+..+.+-|+-+|+.++..+....
T Consensus 377 ~~~gLf~AGqi~g~~Gy~eA~a~G~~AG~naa~~~ 411 (641)
T 3cp8_A 377 PVENLFFAGQINGTSGYEEAAAQGLMAGINAVRKI 411 (641)
T ss_dssp SSBTEEECSGGGTBCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCEEEEEeecCCccHHHHHHHHHHHHHHHHHHh
Confidence 35799999999888899999999999887765543
No 81
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=20.75 E-value=91 Score=27.90 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=27.6
Q ss_pred CCCCeEEeeCCCCCC-ChhHHHHHHHHHHHHHHH
Q 024514 229 VKRRLAICGDFCVSP-NVEGAILSGLDAASKLTE 261 (266)
Q Consensus 229 ~~~~l~~~GDw~~g~-~vE~A~~SG~~~A~~l~~ 261 (266)
..++|+++||...++ -...|+..|..+|+.|..
T Consensus 316 ~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 349 (478)
T 1v59_A 316 KFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKT 349 (478)
T ss_dssp SSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcC
Confidence 457899999987765 467899999999999875
No 82
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=20.66 E-value=90 Score=27.92 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=28.3
Q ss_pred CCCCeEEeeCCCCC-CChhHHHHHHHHHHHHHHHH
Q 024514 229 VKRRLAICGDFCVS-PNVEGAILSGLDAASKLTEI 262 (266)
Q Consensus 229 ~~~~l~~~GDw~~g-~~vE~A~~SG~~~A~~l~~~ 262 (266)
..++|+++||...+ .....|...|..+|+.|...
T Consensus 299 ~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (466)
T 3l8k_A 299 NIPNVFATGDANGLAPYYHAAVRMSIAAANNIMAN 333 (466)
T ss_dssp SSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCC
Confidence 45799999998765 46688999999999998753
No 83
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=20.19 E-value=79 Score=27.44 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=27.9
Q ss_pred CCeEEeeCCC------CCCChhHHHHHHHHHHHHHHHHh
Q 024514 231 RRLAICGDFC------VSPNVEGAILSGLDAASKLTEIL 263 (266)
Q Consensus 231 ~~l~~~GDw~------~g~~vE~A~~SG~~~A~~l~~~l 263 (266)
.++.+.||.. .|.++.-|+.+|..+|+.|.+.+
T Consensus 288 ~~v~lvGDAa~~~~P~~G~G~~~A~~~a~~la~~l~~~~ 326 (421)
T 3nix_A 288 DGFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQFL 326 (421)
T ss_dssp TTEEECGGGTCBCCSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecccccccCCcccccHHHHHHHHHHHHHHHHHHh
Confidence 5799999974 45789999999999999998764
Done!