Query 024515
Match_columns 266
No_of_seqs 191 out of 1336
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:10:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05592 rplO 50S ribosomal pr 100.0 3.6E-53 7.7E-58 358.6 15.4 146 74-229 1-146 (146)
2 TIGR01071 rplO_bact ribosomal 100.0 8.7E-52 1.9E-56 349.0 14.3 145 75-227 1-145 (145)
3 COG0200 RplO Ribosomal protein 100.0 9.2E-44 2E-48 303.3 12.2 149 74-230 1-152 (152)
4 KOG0846 Mitochondrial/chloropl 100.0 1.5E-43 3.3E-48 320.8 10.0 183 69-257 17-219 (274)
5 PF00828 Ribosomal_L18e: Ribos 100.0 1.7E-31 3.7E-36 219.7 0.8 119 100-228 3-128 (129)
6 PRK06419 rpl15p 50S ribosomal 99.9 5.9E-26 1.3E-30 192.9 12.9 130 86-230 4-146 (148)
7 PTZ00160 60S ribosomal protein 99.9 4.7E-24 1E-28 181.5 10.9 129 85-229 3-146 (147)
8 PRK04005 50S ribosomal protein 99.5 1.4E-14 3.1E-19 118.4 4.2 78 128-230 18-95 (111)
9 KOG1742 60s ribosomal protein 99.4 1E-13 2.2E-18 117.2 2.0 134 85-229 3-146 (147)
10 COG1727 RPL18A Ribosomal prote 98.9 5.5E-10 1.2E-14 92.6 3.3 78 128-230 29-106 (122)
11 PTZ00469 60S ribosomal subunit 98.5 9.8E-08 2.1E-12 84.6 3.0 64 148-230 56-123 (187)
12 PTZ00195 60S ribosomal protein 98.2 6.6E-07 1.4E-11 79.8 2.4 74 148-230 56-131 (198)
13 KOG1714 60s ribosomal protein 84.1 0.93 2E-05 40.5 2.9 39 192-230 84-124 (188)
14 COG0200 RplO Ribosomal protein 74.5 3.9 8.4E-05 35.6 3.6 38 102-139 14-54 (152)
15 PRK10590 ATP-dependent RNA hel 22.1 1.4E+02 0.0031 29.2 4.8 11 72-82 369-379 (456)
No 1
>PRK05592 rplO 50S ribosomal protein L15; Reviewed
Probab=100.00 E-value=3.6e-53 Score=358.65 Aligned_cols=146 Identities=56% Similarity=0.890 Sum_probs=136.9
Q ss_pred eecCCCCCCCCCCcccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeecceecCCCCCCCCCCCeeee
Q 024515 74 FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVP 153 (266)
Q Consensus 74 m~L~nL~p~~GarKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK~rGf~~g~~~~r~~y~~ 153 (266)
|+||||+|++|+++++||+|||++||+|||||||||||++|+|+.+++||||||||||||||| +||++ .++.+|.+
T Consensus 1 m~L~~l~~~~ga~~~~kRvGRG~gsG~GkT~GrG~KGqksR~g~~~~~gFEGGQ~Pl~rrlPk-~Gf~~---~~~~~y~~ 76 (146)
T PRK05592 1 MKLNELKPAPGSRKARKRVGRGIGSGLGKTAGRGHKGQKARSGGGVRPGFEGGQMPLYRRLPK-RGFTN---IFRKEYAV 76 (146)
T ss_pred CccccCcCCCCCcCCCccEecCCCCCCCCcCCCCCCcccCCCCCCCCCccccCCCceEEEccc-CCcCC---CCcceEEE
Confidence 899999999999999999999999999999999999999999988999999999999999999 59986 36789999
Q ss_pred EecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEEEEecCHHHHHHHHHcCCEEEEe
Q 024515 154 VNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 229 (266)
Q Consensus 154 INL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ika~~fSksAkekIEaAGGsV~~~ 229 (266)
|||++|+. ++++++||+++|++.|+|+.. ..+|||||+|+|+++|+|+++.||++|+|+||+|||+|+++
T Consensus 77 VNL~~L~~--~~~~~~I~~~~L~~~gli~~~----~~~vKvLg~G~l~~~i~I~a~~~S~sA~e~IE~aGG~v~~~ 146 (146)
T PRK05592 77 VNLGDLNK--FEEGTEVTLEALKAAGLIRKN----IKGVKVLGNGELTKKLTVKAHKFSKSAKEAIEAAGGKVEEI 146 (146)
T ss_pred EeHHHhhc--cCCCCeECHHHHHHCCcccCC----CcceEEEecCccccCEEEEEEccCHHHHHHHHHcCCEEEeC
Confidence 99999985 788999999999999999753 35899999999999999999999999999999999999763
No 2
>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle.
Probab=100.00 E-value=8.7e-52 Score=349.01 Aligned_cols=145 Identities=51% Similarity=0.812 Sum_probs=133.9
Q ss_pred ecCCCCCCCCCCcccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeecceecCCCCCCCCCCCeeeeE
Q 024515 75 RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPV 154 (266)
Q Consensus 75 ~L~nL~p~~GarKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK~rGf~~g~~~~r~~y~~I 154 (266)
+||||+|+||++++++|+|||++||+|||||||||||++|+|+.+++||||||||||||||| +||++. + ++.+|.+|
T Consensus 1 ~l~~l~~~~g~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~R~g~~~~~gfEGGQ~Pl~rrlPK-~GF~~~-~-~~~~~~~V 77 (145)
T TIGR01071 1 KLNELKPAKGAKKRRKRVGRGIGSGLGKTSGRGHKGQKARSGGKVRRGFEGGQMPLYRRLPK-RGFSNK-R-FKKEYAEV 77 (145)
T ss_pred CcccCcCCCCCcCCCcceeCCCCCCCCCcCCCCCCcCcCCCCCCCCCeecCCCCceEEECCC-CCCCCc-c-cCcceeEE
Confidence 48999999999999999999999999999999999999999999999999999999999999 599863 2 67889999
Q ss_pred ecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEEEEecCHHHHHHHHHcCCEEE
Q 024515 155 NLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLT 227 (266)
Q Consensus 155 NL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ika~~fSksAkekIEaAGGsV~ 227 (266)
||++|++ .++++++||+++|.+.++|+.. ..++||||+|+|+++|+|+|++||++|+|+||+|||+|+
T Consensus 78 NL~~L~~-~~~~g~~i~~~~L~~~gli~~~----~~~vKvLg~G~l~~~l~I~a~~~S~sA~ekIE~aGG~v~ 145 (145)
T TIGR01071 78 NLGKLAK-LFPNGEVVTLETLKEKGLITKK----IKFVKVLGNGKLTKPLTVKAHRVSKSAKAAIEAAGGSVE 145 (145)
T ss_pred EHHHHhh-hhhcCCEecHHHHhhCccCcCC----CCceEEeCCCCcCcCEEEEEEEECHHHHHHHHHcCCEEC
Confidence 9999986 3577899999999999999742 346999999999999999999999999999999999984
No 3
>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-44 Score=303.32 Aligned_cols=149 Identities=48% Similarity=0.761 Sum_probs=134.7
Q ss_pred eecCCCCCCCCCCcccceeeccccCCCCCcccCCCCCCCCCCCCC-CCCCccCCCCCeEeecceecCCCCCCCCCCC-ee
Q 024515 74 FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPG-VRKGFEGGQMPLYRRIPKLRGIAGGMHAGLP-KY 151 (266)
Q Consensus 74 m~L~nL~p~~GarKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~-~r~GFEGGQtPl~rRlPK~rGf~~g~~~~r~-~y 151 (266)
|+||+|.|..|+++.++|+|||++||+|||+|||||||++|+|+. +++||||||||||+|||| +||++ ..+.. +|
T Consensus 1 m~l~~l~~~~G~~~~~~rvgrG~~sG~Gkt~GRG~kGqkaRsg~~~~~~gfeGgq~Pl~rrlpK-~GF~~--~~~~~~~~ 77 (152)
T COG0200 1 MRLNDLKPARGSKKTRKRVGRGIGSGLGKTGGRGHKGQKARSGHKWVRPGFEGGQMPLYRRLPK-RGFTN--SKFKKVEY 77 (152)
T ss_pred CcccccCcCCCCccccCCcccCCCCCCCCCCCCCCCCCccccCCceecceeecCCcchhhhcCC-CCCcc--ccccccce
Confidence 789999999999999999999999999999999999999999966 899999999999999999 69986 23444 89
Q ss_pred eeEecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEEEE-ecCHHHHHHHHHcCCEEEEec
Q 024515 152 VPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKAR-AFSTSAKEKLEAAGCTLTVLP 230 (266)
Q Consensus 152 ~~INL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ika~-~fSksAkekIEaAGGsV~~~~ 230 (266)
.+|||++|+. .++++++||+++|.+.++|... ...+||||+|+|++++.|++. .||++|+|+||+|||+|++++
T Consensus 78 ~~vn~~~l~~-~~~~~~~v~~~~l~~~~~i~~~----~~~vKvLg~G~l~~~~~~~v~a~~S~~A~ekIe~aGG~v~~~~ 152 (152)
T COG0200 78 AVVNLGKLAE-LLPEGEEVTLASLKAAGVIRKL----KDLVKVLGNGKLTKAVPVKVKAKASKSAIEKIEAAGGKVELIE 152 (152)
T ss_pred eEEEHHHhhh-hccccccccHHHHhhCCeEecc----ccccEEeccCeeccceeEEEEeeeCHHHHHHHHHcCCEEEecC
Confidence 9999999996 4788999999999999999764 446999999999977777666 999999999999999999863
No 4
>KOG0846 consensus Mitochondrial/chloroplast ribosomal protein L15/L10 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-43 Score=320.83 Aligned_cols=183 Identities=41% Similarity=0.674 Sum_probs=159.4
Q ss_pred CCCCceecCCCCCCCCCCcccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeecceecCCCCCCCCCC
Q 024515 69 VTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL 148 (266)
Q Consensus 69 ~~~~~m~L~nL~p~~GarKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK~rGf~~g~~~~r 148 (266)
+..+|+.|+||+|++|+++ ++|+|||++||+|||||||||||++|++ ....||||||||+|+||||| ||.+ .++
T Consensus 17 r~~sr~~L~dLrpn~gskk-~kR~GRg~~sG~Gkt~GrG~KGqkqR~~-~~~lGfEgGqtP~yrr~Pk~-~~~~---~~~ 90 (274)
T KOG0846|consen 17 RALSRVRLNDLRPNPGSKK-KKRKGRGISSGLGKTSGRGHKGQKQRGG-RKILGFEGGQTPLYRRFPKF-GFGN---GGR 90 (274)
T ss_pred hhhhhhhhhccCCCCCccc-ccccCCCcCCCCccccCCCCcchhhccC-CCccccccCCchhHHhcccc-cccc---ccc
Confidence 7888999999999999998 7899999999999999999999999987 34459999999999999997 8764 457
Q ss_pred CeeeeEecchhh----hcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEEEEecCHHHHHHHHHcCC
Q 024515 149 PKYVPVNLKDIE----AAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGC 224 (266)
Q Consensus 149 ~~y~~INL~~L~----~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ika~~fSksAkekIEaAGG 224 (266)
.+|.+++|.+|+ .++|++.++|||++|++.|+|....+++.+.++..|.++|+.+|+|+|+.||..||++||++||
T Consensus 91 r~~~pl~L~rlq~lID~grid~~q~Idm~tL~~~g~i~p~~~eyGv~L~~~G~d~~~~~i~iEvs~aS~~AiaaIEkaGG 170 (274)
T KOG0846|consen 91 RQYLPLSLGRLQKLIDTGRIDPSQPIDMKTLKDSGLINPKGREYGVQLTADGADEFKAKINIEVSRASVQAIAAIEKAGG 170 (274)
T ss_pred ccCCcccHHHHHHHHHhcCCCccCceeHHHHHhccCCCccccccCceeeccCCccccceEEEEehhhhHHHHHHHHhcCC
Confidence 889999999874 6789999999999999999888777666666677777789999999999999999999999999
Q ss_pred EEEEecC----------ccccccc-ccccchhh-----HHHHHHhhcch
Q 024515 225 TLTVLPG----------RKKWVKP-SVAKNLAR-----AEEYFAKKRAA 257 (266)
Q Consensus 225 sV~~~~~----------~k~~~~~-~~~~~~~~-----~~~~~~~~~~~ 257 (266)
+|++.+. -+.|+.+ .+++..+| .|+|+..|+++
T Consensus 171 ~vtt~yy~p~~Lra~lnP~~wf~~g~~vP~~~rPp~~~idyYtd~k~rG 219 (274)
T KOG0846|consen 171 SVTTAYYDPLSLRAHLNPKKWFEPGSPVPKRARPPQKDIDYYTDPKNRG 219 (274)
T ss_pred eEEEEEEcchhhhhhcCchhhcccCCcCccccCCChhhhhhhhchhhcc
Confidence 9998752 3488888 66666665 77888888873
No 5
>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents both L15 and L18e ribosomal proteins, which share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with a core of three turns of irregular (beta-beta-alpha)n superhelix [, ].; PDB: 3O58_Y 1S1I_V 3O5H_Y 3IZS_O 3IZR_R 2OTL_L 1M1K_M 3G6E_L 1VQ9_L 1YIT_L ....
Probab=99.96 E-value=1.7e-31 Score=219.70 Aligned_cols=119 Identities=48% Similarity=0.744 Sum_probs=101.6
Q ss_pred CCCcccCCCCCCCCCCCC-CCCCCccCCCCCeEeecceecCCCCCCCC--CCCeeeeEecchhhhcCCC---CC-CeecH
Q 024515 100 QGNSCGFGMRGQKSRSGP-GVRKGFEGGQMPLYRRIPKLRGIAGGMHA--GLPKYVPVNLKDIEAAGFL---EG-DEVSL 172 (266)
Q Consensus 100 ~GKT~GrG~KGQkaRsG~-~~r~GFEGGQtPl~rRlPK~rGf~~g~~~--~r~~y~~INL~~L~~~~l~---~~-~~I~~ 172 (266)
+|+|||+|||||++|+|. ..+++|||||||+|+|||| +||++. +. .+..|.+|||++|++. ++ .. .++|.
T Consensus 3 ~gkt~grG~kG~~~rsG~~~~~~~feggq~pl~rr~pK-~Gf~~~-~~~~~~~~~~~vnL~~L~~~-i~~~~~~~~~~~~ 79 (129)
T PF00828_consen 3 KGKTRGRGHKGGRGRSGGHKHRPGFEGGQMPLYRRLPK-RGFNNP-HLRKNRREYPPVNLSKLQEL-IEKLKIDGTEIDG 79 (129)
T ss_dssp SSSSSSSSSSSSSSSTTTSSTSSHHHHHHSHHHHHSSS-SSHHHC-CHCSGTCCCEEEEHHHHHHH-TTTSSSSSCECTT
T ss_pred CCccCcccCCCCCCCCCCCCCCchhcccccccccccCc-cccccc-ccccCcceeEeeeHHHHHHH-HHhccccccccCC
Confidence 589999999999999997 7889999999999999999 699852 22 3467999999999863 22 11 26777
Q ss_pred HHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEEEEecCHHHHHHHHHcCCEEEE
Q 024515 173 ETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTV 228 (266)
Q Consensus 173 ~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ika~~fSksAkekIEaAGGsV~~ 228 (266)
+.|.+.+++ ..++||||+|+|++||+|+|+.||++|+|+||+|||+|++
T Consensus 80 ~~~~~~~~~-------~~~~KvLg~G~l~~~l~I~a~~~S~~A~ekIe~aGG~v~~ 128 (129)
T PF00828_consen 80 KILVDAGLI-------KGYVKVLGKGELTKPLTIKAHRFSKSAKEKIEAAGGEVVT 128 (129)
T ss_dssp SEEEECCEE-------SSEEEEESSSSSSSSEEEEESEETHHHHHHHHHTSEEEEE
T ss_pred ceeeecccc-------ccceeeeccCCcccceEEEEEecCHHHHHHHHHcCCEEEe
Confidence 888888776 2579999999999999999999999999999999999986
No 6
>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed
Probab=99.93 E-value=5.9e-26 Score=192.95 Aligned_cols=130 Identities=25% Similarity=0.352 Sum_probs=106.6
Q ss_pred CcccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeeccee-------cCCCCCCCCCCCeeeeEecch
Q 024515 86 RKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKL-------RGIAGGMHAGLPKYVPVNLKD 158 (266)
Q Consensus 86 rKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK~-------rGf~~g~~~~r~~y~~INL~~ 158 (266)
+++|.|+.||+ .|||||+.||+..+|....+|.+|++.|.|.|+.|| +||++. +..+.+|.+|||++
T Consensus 4 ~~~k~rk~RG~-----~t~G~G~~~~~R~~G~~GGrG~aG~~~h~~~~~~k~~p~~fpK~GF~~~-~~~~~~~~~INL~~ 77 (148)
T PRK06419 4 KKKKSRKLRGS-----RTHGGGTHKNHRGAGSRGGRGMAGRHKHKWTWVVKYGPDWYGKHGFKRP-PKLIKEVSTINVGE 77 (148)
T ss_pred ccccccCCCcC-----CCcCCCCcCcCCCCCCCCCCcccCCCcccceEeeeeCCCCCCCCCccCC-CcCcceeeeEEHHH
Confidence 56788999994 689999998887777777899999999999997766 356542 22236799999999
Q ss_pred hhhcCCCCCCeecHHHHHHCCCcCCCCCCc------ccCeEEEcCCccceeeEEEEEecCHHHHHHHHHcCCEEEEec
Q 024515 159 IEAAGFLEGDEVSLETLKKKGLINPSGRER------KLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLP 230 (266)
Q Consensus 159 L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~------~~~VKVLG~Geltkkl~Ika~~fSksAkekIEaAGGsV~~~~ 230 (266)
||+. ++.|.+.++|+.++..+ ..++||||+|+|++||+|+|+.||++|+|+||+|||+|++++
T Consensus 78 L~~l---------~~~l~~~g~i~~~~~~~vid~~~~g~~KVLG~G~l~~pl~Vka~~fS~~A~ekIe~aGG~v~l~~ 146 (148)
T PRK06419 78 LDEL---------ADLLKAEGKAEEEDGKIVVDLTELGYDKVLGGGKVTRPLVIKADAFSEKAIEKIEAAGGEVVLSE 146 (148)
T ss_pred HHHh---------HHHHHHCCcccccCCcceeeeccCCceEEeCCCccCcCEEEEEeccCHHHHHHHHHcCCEEEEee
Confidence 9864 46788888886543221 247999999999999999999999999999999999999875
No 7
>PTZ00160 60S ribosomal protein L27a; Provisional
Probab=99.91 E-value=4.7e-24 Score=181.49 Aligned_cols=129 Identities=25% Similarity=0.289 Sum_probs=95.1
Q ss_pred CCcccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeecceecCCCCCCCCC------CCee--eeEec
Q 024515 85 SRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAG------LPKY--VPVNL 156 (266)
Q Consensus 85 arKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK~rGf~~g~~~~------r~~y--~~INL 156 (266)
.+++|.|+.||+ .|||+|+.||+. . ....+|++|||.|+|.|+.||++..+|++.| +.++ .+|||
T Consensus 3 ~r~kK~rK~RG~-----rt~G~G~~gkhR-~-~~GGrG~AG~~kH~~~~~~ky~p~~fGK~Gfr~~~~~~~~~~~~~INl 75 (147)
T PTZ00160 3 TRFKKCRKMRGH-----VSHGYGRVGKHR-K-HPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRHFHLKKNKYYCPTINV 75 (147)
T ss_pred cccccccCCCCC-----CccCCCCCCCCC-C-CCCCCcccCCCcceEEEeeecCCCccCCCCccCCccccccccCceeEH
Confidence 467888999995 689999977752 2 3444899999999999999995433343333 3444 89999
Q ss_pred chhhhcCCCCCCeecHHHHHHCCCcCCCCC------CcccCeEEEcCCcc-ceeeEEEEEecCHHHHHHHHHcCCEEEEe
Q 024515 157 KDIEAAGFLEGDEVSLETLKKKGLINPSGR------ERKLPLKILGDGEL-SKKLNFKARAFSTSAKEKLEAAGCTLTVL 229 (266)
Q Consensus 157 ~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~------~~~~~VKVLG~Gel-tkkl~Ika~~fSksAkekIEaAGGsV~~~ 229 (266)
++||++ ++.|.+.+++...+. ....++||||+|+| +++|+|++..||++|+|+||++||+|+++
T Consensus 76 ~~L~~l---------v~~~~~~~~a~~~~~~~vIDl~~~g~~KVLG~G~l~~~~v~Vka~~~Sk~A~ekIe~aGG~v~l~ 146 (147)
T PTZ00160 76 DKLWSL---------VPEETRYKYAKKGDKAPVIDVTKAGYFKVLGKGHLPKQPVIVKARYFSKKAEKKIKAVGGACVLT 146 (147)
T ss_pred HHHHHH---------hHHHHHHhhhhccCCceEEEeeccCceEEecCCeEcCccEEEEEeecCHHHHHHHHHcCCEEEEc
Confidence 999974 222333333222111 11346999999999 67999999999999999999999999876
No 8
>PRK04005 50S ribosomal protein L18e; Provisional
Probab=99.50 E-value=1.4e-14 Score=118.42 Aligned_cols=78 Identities=33% Similarity=0.513 Sum_probs=64.7
Q ss_pred CCeEeecceecCCCCCCCCCCCeeeeEecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEE
Q 024515 128 MPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFK 207 (266)
Q Consensus 128 tPl~rRlPK~rGf~~g~~~~r~~y~~INL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ik 207 (266)
-|+|++++|+ +. ..+.+|.+|||++|+. ..+++++|+ .++||||+|+++++++|+
T Consensus 18 ~~~~~~v~~r--l~----~~r~~y~vVNL~~L~~-~~~~~~vv~------------------~~~KVLg~G~l~k~l~V~ 72 (111)
T PRK04005 18 APIWKDVAER--LE----KPRRRRAEVNLSKINR-YAKEGDTVV------------------VPGKVLGSGKLDHKVTVA 72 (111)
T ss_pred CcHHHHHHHH--Hh----CCCCccceEEHHHHHh-hccCCCEEE------------------EeeEEEcCceEcCCEEEE
Confidence 4899999994 32 3467899999999984 223555552 268999999999999999
Q ss_pred EEecCHHHHHHHHHcCCEEEEec
Q 024515 208 ARAFSTSAKEKLEAAGCTLTVLP 230 (266)
Q Consensus 208 a~~fSksAkekIEaAGGsV~~~~ 230 (266)
++.||++|+++||++||+|+++.
T Consensus 73 a~~~Sk~A~ekIe~aGG~v~~~~ 95 (111)
T PRK04005 73 ALSFSETAKEKIEEAGGKALTIE 95 (111)
T ss_pred EeecCHHHHHHHHHcCCEEEEHH
Confidence 99999999999999999998764
No 9
>KOG1742 consensus 60s ribosomal protein L15/L27 [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1e-13 Score=117.16 Aligned_cols=134 Identities=29% Similarity=0.327 Sum_probs=92.0
Q ss_pred CCcccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeecceec-CCCC--CC---CCCC--CeeeeEec
Q 024515 85 SRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLR-GIAG--GM---HAGL--PKYVPVNL 156 (266)
Q Consensus 85 arKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK~r-Gf~~--g~---~~~r--~~y~~INL 156 (266)
++-+|+|+.||+.| .-+||=.|.|++.+| +|.+|| |+.+.|.||+ ||.. |+ |..+ .-+.+|||
T Consensus 3 s~~rKTrKLrGHVS---hGhgrigKhrkhpgG----rg~agg--hhr~~fdKyhpgyfgkvgmr~yh~~rn~~~~P~vnl 73 (147)
T KOG1742|consen 3 SRLRKTRKLRGHVS---HGHGRIGKHRKHPGG----RGNAGH--HHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNL 73 (147)
T ss_pred chhhHHHHhhcccc---cccccccccccCCCC----ccccCC--cccccccccCCCcccccchhHHHHhhccCcCCcccH
Confidence 35678999999988 113333478888877 899999 8888999986 4321 11 2212 23689999
Q ss_pred chhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccc--eeeEEEEEecCHHHHHHHHHcCCEEEEe
Q 024515 157 KDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELS--KKLNFKARAFSTSAKEKLEAAGCTLTVL 229 (266)
Q Consensus 157 ~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Gelt--kkl~Ika~~fSksAkekIEaAGGsV~~~ 229 (266)
++||.+ +.+....++.. ...|.++..|.....+.|+||.|.+. +|+.|++..||..|+|+|.++||.+++.
T Consensus 74 dkLWtl-v~~~~~~~~~~-~k~g~aPvidv~~~Gy~kvlGkgklp~~~PvIVKak~~s~~AeekIk~~gg~~~~~ 146 (147)
T KOG1742|consen 74 DKLWTL-VREQTRVKAAK-NKTGAAPVIDVVQSGYYKVLGKGKLPEETPVIVKAKYFSRRAEEKIKKAGGAVVLT 146 (147)
T ss_pred HHHHHh-hhHHHHHHHhc-cCCCCCceeeeeecceeEeeccccCCCCCcEEEeccccCccchHHHHhcCceeeec
Confidence 999863 32222221111 12333333332233578999999986 7999999999999999999999998764
No 10
>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=5.5e-10 Score=92.63 Aligned_cols=78 Identities=35% Similarity=0.474 Sum_probs=62.8
Q ss_pred CCeEeecceecCCCCCCCCCCCeeeeEecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEE
Q 024515 128 MPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFK 207 (266)
Q Consensus 128 tPl~rRlPK~rGf~~g~~~~r~~y~~INL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ik 207 (266)
-|+|+.+-++ =+. .+..+.+|||++|+. +..++++| ..+-||||+|.++++++|-
T Consensus 29 a~iwk~vaer-L~~-----prr~ra~VnlsKI~r-~ak~~d~v------------------vVpGkVLg~g~l~~kVtVa 83 (122)
T COG1727 29 APIWKDVAER-LEK-----PRRNRAEVNVSKINR-YAKEGDTV------------------VVPGKVLGDGKLDKKVTVA 83 (122)
T ss_pred CHHHHHHHHH-Hhc-----ccccCCceeHHHHHh-hcCCCCEE------------------EEeeeEecCcccccceEEE
Confidence 4677777773 332 355789999999986 34444433 3578999999999999999
Q ss_pred EEecCHHHHHHHHHcCCEEEEec
Q 024515 208 ARAFSTSAKEKLEAAGCTLTVLP 230 (266)
Q Consensus 208 a~~fSksAkekIEaAGGsV~~~~ 230 (266)
|-.||++|++||+++||+|..++
T Consensus 84 Al~FS~~A~~KI~~aGGe~~tl~ 106 (122)
T COG1727 84 ALRFSKTAREKIEEAGGECLTLE 106 (122)
T ss_pred EEecCHHHHHHHHHcCCeEeeHH
Confidence 99999999999999999999875
No 11
>PTZ00469 60S ribosomal subunit protein L18; Provisional
Probab=98.46 E-value=9.8e-08 Score=84.55 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=51.8
Q ss_pred CCeeeeEecchhhhcCC--CCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccc--eeeEEEEEecCHHHHHHHHHcC
Q 024515 148 LPKYVPVNLKDIEAAGF--LEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELS--KKLNFKARAFSTSAKEKLEAAG 223 (266)
Q Consensus 148 r~~y~~INL~~L~~~~l--~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Gelt--kkl~Ika~~fSksAkekIEaAG 223 (266)
+..+.+|||++|+.. . .++++ .+.+-||||+|.|. .+++|-|-.||++|+++||+||
T Consensus 56 rrnr~pVnLSkI~r~-~~~ke~~~------------------~VVvGkVl~dgrl~~vpkvtVaAL~fS~~Ar~kI~~AG 116 (187)
T PTZ00469 56 KRFRPPLSLSKLHRH-MASYPDDV------------------AVVVGSITDDKRLYDCKKLKVCALRFTETARKRILDAG 116 (187)
T ss_pred cccCCceeHHHHHHH-hccCCCCE------------------EEEEeeEccCccccccCceEEEEEecCHHHHHHHHHhC
Confidence 456789999999752 2 12221 24567999999999 8999999999999999999999
Q ss_pred CEEEEec
Q 024515 224 CTLTVLP 230 (266)
Q Consensus 224 GsV~~~~ 230 (266)
|+|..+.
T Consensus 117 Ge~lT~d 123 (187)
T PTZ00469 117 GECLTFD 123 (187)
T ss_pred CEEEeHH
Confidence 9999864
No 12
>PTZ00195 60S ribosomal protein L18; Provisional
Probab=98.20 E-value=6.6e-07 Score=79.85 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=52.8
Q ss_pred CCeeeeEecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccce--eeEEEEEecCHHHHHHHHHcCCE
Q 024515 148 LPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSK--KLNFKARAFSTSAKEKLEAAGCT 225 (266)
Q Consensus 148 r~~y~~INL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltk--kl~Ika~~fSksAkekIEaAGGs 225 (266)
+..+.+|||++|+.. ..+++..+ +.| .++...+..-|||++|.|.. +++|-|-.||++|+++|++|||+
T Consensus 56 r~nRppVsLSrI~r~-~k~~d~~~-----~~~---~~~k~~VVvGkVtdd~rl~~vPkvtVaALrfS~tAr~rI~kAGGe 126 (198)
T PTZ00195 56 RSNRAPISLSRIAVV-MKRKAVFT-----AKG---KKAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGE 126 (198)
T ss_pred cccCCceeHHHHHHH-Hhcccccc-----ccC---CCCcEEEEEeeEcCCccccccCceEEEEEecCHHHHHHHHHhCCE
Confidence 456789999999752 22221110 011 01111244679999999998 99999999999999999999999
Q ss_pred EEEec
Q 024515 226 LTVLP 230 (266)
Q Consensus 226 V~~~~ 230 (266)
|..+.
T Consensus 127 ~lT~d 131 (198)
T PTZ00195 127 CLTFD 131 (198)
T ss_pred EEeHH
Confidence 99874
No 13
>KOG1714 consensus 60s ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=84.08 E-value=0.93 Score=40.54 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=31.1
Q ss_pred eEEEcCCccc--eeeEEEEEecCHHHHHHHHHcCCEEEEec
Q 024515 192 LKILGDGELS--KKLNFKARAFSTSAKEKLEAAGCTLTVLP 230 (266)
Q Consensus 192 VKVLG~Gelt--kkl~Ika~~fSksAkekIEaAGGsV~~~~ 230 (266)
-+|..+-++- -++.|.+-.||+.|++.|+++||+|.++.
T Consensus 84 gTvtdD~rv~~vPkl~v~al~~t~~ar~rI~kagg~i~TlD 124 (188)
T KOG1714|consen 84 GTVTDDLRVQEVPKLKVAALRFTKGARARILKAGGEILTLD 124 (188)
T ss_pred eeecccceeeecccceeeeeecccchhhhhhccCceEEeeH
Confidence 3555555443 37999999999999999999999998763
No 14
>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
Probab=74.50 E-value=3.9 Score=35.57 Aligned_cols=38 Identities=21% Similarity=0.089 Sum_probs=28.7
Q ss_pred CcccCCCCCCCCCCCCCCCCCccCCC---CCeEeecceecC
Q 024515 102 NSCGFGMRGQKSRSGPGVRKGFEGGQ---MPLYRRIPKLRG 139 (266)
Q Consensus 102 KT~GrG~KGQkaRsG~~~r~GFEGGQ---tPl~rRlPK~rG 139 (266)
+|++|+.+|+.+-.|....+|..|.. -+.|.|+-++.|
T Consensus 14 ~~~~rvgrG~~sG~Gkt~GRG~kGqkaRsg~~~~~~gfeGg 54 (152)
T COG0200 14 KTRKRVGRGIGSGLGKTGGRGHKGQKARSGHKWVRPGFEGG 54 (152)
T ss_pred cccCCcccCCCCCCCCCCCCCCCCCccccCCceecceeecC
Confidence 77888888887766766779998885 456778877644
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=22.10 E-value=1.4e+02 Score=29.17 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=5.8
Q ss_pred CceecCCCCCC
Q 024515 72 VRFRLNNLGPQ 82 (266)
Q Consensus 72 ~~m~L~nL~p~ 82 (266)
+++.+.++.+.
T Consensus 369 ~~~~~~~~~~~ 379 (456)
T PRK10590 369 PRIAIPGYEPD 379 (456)
T ss_pred cccccCCCccC
Confidence 44555555554
Done!