Query 024515
Match_columns 266
No_of_seqs 191 out of 1336
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:36:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_N Ribosomal protein L15; 100.0 1.3E-80 4.4E-85 565.3 -0.9 255 1-266 3-257 (257)
2 3v2d_P 50S ribosomal protein L 100.0 3.8E-53 1.3E-57 359.1 10.8 146 74-230 1-149 (150)
3 3r8s_L 50S ribosomal protein L 100.0 3.3E-53 1.1E-57 356.9 9.6 142 75-227 1-142 (143)
4 2zjr_I 50S ribosomal protein L 100.0 3.1E-52 1E-56 355.2 5.3 155 74-241 1-155 (156)
5 1vq8_L 50S ribosomal protein L 100.0 2.1E-36 7.2E-41 259.6 8.0 136 85-236 3-151 (165)
6 2zkr_l 60S ribosomal protein L 100.0 3E-35 1E-39 247.9 5.2 131 85-229 3-147 (148)
7 3j21_L 50S ribosomal protein L 99.9 6.5E-28 2.2E-32 203.6 5.1 130 85-229 3-147 (147)
8 4a17_K L29, RPL27A, 60S riboso 99.9 2.1E-26 7.1E-31 194.9 1.4 135 85-229 3-148 (149)
9 3o58_Y 60S ribosomal protein L 99.9 9.6E-24 3.3E-28 178.7 4.1 135 85-229 3-148 (149)
10 3iz5_O 60S ribosomal protein L 99.8 5.5E-23 1.9E-27 173.2 -4.5 128 85-229 3-143 (144)
11 3j21_P 50S ribosomal protein L 99.8 1.4E-19 4.7E-24 148.2 3.4 79 127-230 26-104 (120)
12 1vq8_O 50S ribosomal protein L 99.7 5.3E-18 1.8E-22 138.0 3.6 79 126-230 22-100 (116)
13 2zkr_o 60S ribosomal protein L 99.5 1.1E-15 3.8E-20 133.6 2.2 81 127-230 40-124 (188)
14 3jyw_O 60S ribosomal protein L 99.5 2.4E-16 8.3E-21 129.3 -3.9 79 128-231 22-106 (121)
15 3iz5_R 60S ribosomal protein L 99.4 1E-13 3.4E-18 121.2 3.0 78 127-229 41-123 (188)
16 3izc_R 60S ribosomal protein R 99.3 1E-13 3.5E-18 121.0 0.9 78 127-229 41-124 (186)
17 4a17_N RPL18, 60S ribosomal pr 99.3 7.5E-14 2.6E-18 121.4 -0.1 79 127-230 42-125 (181)
18 1vq8_L 50S ribosomal protein L 94.0 0.014 4.7E-07 49.7 1.0 45 87-136 2-46 (165)
19 4a17_K L29, RPL27A, 60S riboso 88.7 0.031 1.1E-06 46.9 -2.6 27 100-126 22-50 (149)
No 1
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.3e-80 Score=565.35 Aligned_cols=255 Identities=74% Similarity=1.121 Sum_probs=164.7
Q ss_pred CCccccccccCCCCCCCCccccccccCCCCCCCccccceecccCCCCceEEEecccccccccccCCCCCCCCceecCCCC
Q 024515 1 MASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASASAIVGSGPVTNVRFRLNNLG 80 (266)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~L~nL~ 80 (266)
||+++++| |+|+|+||||||+++|.++||+.+| ++++++++ |++|||++|++++. ..++.++|+||||+
T Consensus 3 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~m~L~~L~ 71 (257)
T 3bbo_N 3 AASLIPVS--SLPSLASPFKGNVKTLVAKPCLCPC--LKIQRTKL--RVSVVNKAASAYNV-----KSSGENVFRLDNLG 71 (257)
T ss_dssp -------------------------------------------------------------------------CCCSSSC
T ss_pred cccccccc--cCCCCCCcccccccccccccccccc--hhhhccCc--cceeEeeccccccc-----ccCCCCceecccCc
Confidence 89999999 6678999999999999999999888 77787755 99999999997543 34788899999999
Q ss_pred CCCCCCcccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeecceecCCCCCCCCCCCeeeeEecchhh
Q 024515 81 PQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIE 160 (266)
Q Consensus 81 p~~GarKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK~rGf~~g~~~~r~~y~~INL~~L~ 160 (266)
|++|++++++|+|||+|||+|||||||||||++|+|+.+++|||||||||||||||+|||+++++.++++|.+|||++||
T Consensus 72 p~~Gs~k~kkRvGRG~GSG~GKT~GRGhKGQkaRsG~~~r~GFEGGQmPl~rRlPK~rGF~n~~~~~r~~y~~VNL~kL~ 151 (257)
T 3bbo_N 72 PQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIE 151 (257)
T ss_dssp CCCCCCSCCCCCSSCCCCSCSSSCSSSCCCCGGGTSSCSSTTCCSSCSSTTSCCCCCSSCCCCCSSCCSSSSCSCSSCCS
T ss_pred CCCCCccCCcCCcCcCCCCCCCcCCCCCCCCcCcCCCCCCCceecCCCcchhhcccccccCCccccCcceeeeEeHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999779998765556789999999998
Q ss_pred hcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEEEEecCHHHHHHHHHcCCEEEEecCccccccccc
Q 024515 161 AAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSV 240 (266)
Q Consensus 161 ~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ika~~fSksAkekIEaAGGsV~~~~~~k~~~~~~~ 240 (266)
+++|+++++||+++|++.|+|+..++...+++||||+|+|+++|+|+++.||++|+|+||++||+|++++.+++|+++++
T Consensus 152 ~lr~~eg~~Idle~L~~aGlI~~~gr~~~~~VKVLG~GeLtkkLtVkA~~fSksA~eKIEaAGG~v~~i~~~~~~~~~~~ 231 (257)
T 3bbo_N 152 NAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGRKKWVKPSV 231 (257)
T ss_dssp CSSTTTTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSSCCCSSCCCCSSCCTGGGTTSSTTTTCCEECCCSSSSSSSCSC
T ss_pred hcccCCCCEeCHHHHHhCCcccccccccCccEEEEeCCccCCCeEEEEEecCHHHHHHHHHcCCEEEEeecccccchhhh
Confidence 64589999999999999999976433335689999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHhhcchhhccCCCCC
Q 024515 241 AKNLARAEEYFAKKRAAAAASDSTSA 266 (266)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (266)
++|++||+|||++|+++|+++||+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (257)
T 3bbo_N 232 AKNLARAEEYFAKKRGGETASEPAPV 257 (257)
T ss_dssp SCEESSCCC-----------------
T ss_pred cccchhhHHhhhhhcccccccCCCCC
Confidence 99999999999999999999999985
No 2
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=100.00 E-value=3.8e-53 Score=359.10 Aligned_cols=146 Identities=47% Similarity=0.716 Sum_probs=135.1
Q ss_pred eecCCCCCCCCCCcccceeeccccCCCCCcccCCCCCCCCCCCCCCCC-CccCCCCCeEeecceecCCCCCC--CCCCCe
Q 024515 74 FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRK-GFEGGQMPLYRRIPKLRGIAGGM--HAGLPK 150 (266)
Q Consensus 74 m~L~nL~p~~GarKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~-GFEGGQtPl~rRlPK~rGf~~g~--~~~r~~ 150 (266)
|+||||+|+|||+|++||+|||++||+|||||||||||++|+|+.+++ ||||||||||||||| +||++.+ +.++++
T Consensus 1 m~L~~L~p~~Gs~k~~kRvGRG~gSG~GkT~GrG~KGqkaRsg~~~~~~gFEGGQ~Pl~rRlPK-~GF~~~~~~~~~~~~ 79 (150)
T 3v2d_P 1 MKLSDLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPK-RGMQGQVPGEIKRPR 79 (150)
T ss_dssp CCGGGCCCCTTSSCCCCCCSSCTTTSCCTTTTCCSSSTTTSTTCCSCTTTCCTTSCCTTTTSCC-CSCCCCTTCCCCCCC
T ss_pred CccccCCCCCCCCcCCccccCCCCCCCCccCCCCCCcCcCCCCCCCCCccccCCCCccEEEcCc-cCccCccccccccce
Confidence 899999999999999999999999999999999999999999988998 999999999999999 6999721 257889
Q ss_pred eeeEecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEEEEecCHHHHHHHHHcCCEEEEec
Q 024515 151 YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLP 230 (266)
Q Consensus 151 y~~INL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ika~~fSksAkekIEaAGGsV~~~~ 230 (266)
|.+|||++|+. |+ + +||+++|++.|+|.. .++|||||+|+|+ +|+|+++.||++|+|+||+|||+|++++
T Consensus 80 y~~VNL~~L~~--~~-G-~I~~~~L~~~glv~~-----~~~VKvLg~G~l~-~v~V~a~~~S~~A~~kIe~aGG~v~~~~ 149 (150)
T 3v2d_P 80 YQGVNLKDLAR--FE-G-EVTPELLVRAGLLKK-----GYRLKILGEGEAK-PLKVVAHAFSKSALEKLKAAGGEPVLLE 149 (150)
T ss_dssp EEEEEHHHHTT--CC-S-EECHHHHHTTTSSCT-----TCEEEEECSSCCC-SCEECBSCBCHHHHHHHHHTTCBCCBCC
T ss_pred EEEEEHHHHhh--cC-C-cccHHHHHHCCCccc-----ccceEEEecCCcc-cEEEEEEEcCHHHHHHHHHcCCEEEEec
Confidence 99999999986 66 5 999999999999974 3489999999999 9999999999999999999999998763
No 3
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...
Probab=100.00 E-value=3.3e-53 Score=356.95 Aligned_cols=142 Identities=43% Similarity=0.693 Sum_probs=132.4
Q ss_pred ecCCCCCCCCCCcccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeecceecCCCCCCCCCCCeeeeE
Q 024515 75 RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPV 154 (266)
Q Consensus 75 ~L~nL~p~~GarKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK~rGf~~g~~~~r~~y~~I 154 (266)
+||||+|+|||+++++|+|||++||+|||||||||||++|+|+.+++||||||||||||||| +||++ .++++|.+|
T Consensus 1 ~L~~L~p~~Gs~k~~kRvGRG~gsG~Gkt~GrG~KGqkaRsG~~~~~gFEGGQ~Pl~rRlPK-~GF~~---~~~~~y~~V 76 (143)
T 3r8s_L 1 RLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPK-FGFTS---RKAAITAEI 76 (143)
T ss_dssp CCSSCCCCTTSSCCCCCCSSCSTTSSCSGGGSCSSSTTTSTTCCCCTTCCTTSCCHHHHSCC-CCCCC---STGGGEEEC
T ss_pred CcccCCCCCCCCcCcccccCcCCCCCCCCCCCCCCCCcCCCCCCCCCccccCCCccEEEccc-cccCC---cccceeEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999 59986 356789999
Q ss_pred ecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEEEEecCHHHHHHHHHcCCEEE
Q 024515 155 NLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLT 227 (266)
Q Consensus 155 NL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ika~~fSksAkekIEaAGGsV~ 227 (266)
||++|+. ++ +++||+++|++.|+|... .++|||||+|+|+++|+|+++.||++|+|+||+|||+|+
T Consensus 77 NL~~L~~--~~-~~~I~~~~L~~~glv~~~----~~~VKVLg~Gel~~~l~V~a~~~SksA~ekIEaAGG~v~ 142 (143)
T 3r8s_L 77 RLSDLAK--VE-GGVVDLNTLKAANIIGIQ----IEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIE 142 (143)
T ss_dssp CSSSSSC--SS-SSEEEHHHHGGGTSSCTT----CCEEECCCCSCCCSCCEEESSCCCHHHHHHHHTTTCEEE
T ss_pred EHHHhhh--cc-CCeecHHHHHHcCccccC----CCceEEeeCCcccccEEEEEEecCHHHHHHHHHcCCEEe
Confidence 9999985 44 489999999999999753 458999999999999999999999999999999999986
No 4
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Probab=100.00 E-value=3.1e-52 Score=355.19 Aligned_cols=155 Identities=35% Similarity=0.538 Sum_probs=132.2
Q ss_pred eecCCCCCCCCCCcccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeecceecCCCCCCCCCCCeeee
Q 024515 74 FRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVP 153 (266)
Q Consensus 74 m~L~nL~p~~GarKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK~rGf~~g~~~~r~~y~~ 153 (266)
|+||||+|+|||+++++|+|||++ |+|||||||||||++|+|+.+++||||||||||||||| +||++ ++.+|.+
T Consensus 1 m~L~~L~p~~gs~~~~kRvGRG~g-g~Gkt~GrG~KGqk~RsG~~~~~gfEGGQ~Pl~rrlPK-~GF~n----~~~~~~~ 74 (156)
T 2zjr_I 1 MKLHDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPK-RGFNN----VGTTYEV 74 (156)
T ss_dssp ---CCCCCCSSTTTCCCCSSSCCC-CCCSCSSSCCCCSSSSSCCSCCCSCSCCSSSSTTTSCC-CCCCC----CCCCCCE
T ss_pred CccccCCCCCCCccCCcccCCCCC-CCCCcCCCCCCCCCCCCCCCCCCceEcCcCCCeEecCC-CCCcC----CceEEEe
Confidence 899999999999999999999999 99999999999999999988899999999999999999 69985 5678999
Q ss_pred EecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEEEEecCHHHHHHHHHcCCEEEEecCcc
Q 024515 154 VNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRK 233 (266)
Q Consensus 154 INL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ika~~fSksAkekIEaAGGsV~~~~~~k 233 (266)
|||++||. |.+++ ||+++|++.|+|+.. .++|||||+|+|+++|+|+|+.||++|+|+||+|||+|++++.+.
T Consensus 75 VNL~~L~~--l~~~~-i~~~~L~~~gli~~~----~~~vKVLG~G~l~~~l~Vka~~fSk~A~ekIEaAGG~v~~i~~~~ 147 (156)
T 2zjr_I 75 VKLSQLQD--LEDTT-FDRDTLEAYRLVRRK----NRPVKLLASGEISRAVTVHVDAASAAAIKAVEAAGGRVVLPEVQT 147 (156)
T ss_dssp ECHHHHTT--SCCCC-CCTTTTHHHHHCCCC----SSCCEECCCCCCCCCCCCCCSEECHHHHHHHGGGSCCCCCCC---
T ss_pred echhHHHh--hhcCC-cCHHHHHhCCcEecc----ccceEEeeCCccCcCeEEEEEecCHHHHHHHHHcCCEEEEeeccc
Confidence 99999985 55656 999999999999763 468999999999999999999999999999999999999999999
Q ss_pred cccccccc
Q 024515 234 KWVKPSVA 241 (266)
Q Consensus 234 ~~~~~~~~ 241 (266)
.|+.+..|
T Consensus 148 ~~~~~~~~ 155 (156)
T 2zjr_I 148 QQDDAQKA 155 (156)
T ss_dssp --------
T ss_pred cccchhcc
Confidence 99886543
No 5
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=100.00 E-value=2.1e-36 Score=259.61 Aligned_cols=136 Identities=22% Similarity=0.320 Sum_probs=116.3
Q ss_pred CCcccceeeccccCC-CCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeecceecCCCCCCCCCCCeeeeEecchhhhcC
Q 024515 85 SRKRGKRKGRGIAAG-QGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAG 163 (266)
Q Consensus 85 arKkkkRvGRG~gSG-~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK~rGf~~g~~~~r~~y~~INL~~L~~~~ 163 (266)
++++|+|+|||+||| +|||+|+|||||++|+|+..+.+| |||+ ||| +||++. +..+++|.+|||++||..
T Consensus 3 ~k~~k~R~gRg~GsG~~GKt~grGhkGqk~raGg~~~~~~-----pl~k-lPK-~GF~~~-~~~r~~~~~VNL~~L~~l- 73 (165)
T 1vq8_L 3 SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFH-----NHEP-LGK-SGFKRP-QKVQEEAATIDVREIDEN- 73 (165)
T ss_dssp CHHHHCTTCSSTTCSSTTSSCSGGGGTSSTTTTTTTTTCT-----TSCC-SCC-CCCCCC-GGGCCCEEEEEHHHHHHT-
T ss_pred ccccCcCCccCCCCCCCCCCCCCCCCCcccccCCCcCCCc-----eeeE-CCC-CCCccC-CcccceeeeEEHHHHHHH-
Confidence 456788999999999 999999999999999998888888 9999 999 699863 333467999999999863
Q ss_pred C-----------CCC-CeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEEEEEecCHHHHHHHHHcCCEEEEecC
Q 024515 164 F-----------LEG-DEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPG 231 (266)
Q Consensus 164 l-----------~~~-~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~Ika~~fSksAkekIEaAGGsV~~~~~ 231 (266)
+ +++ .+||+++|++.|+|. .++||||+|+|+++|+|+|+.||++|+|+||+|||+|++++.
T Consensus 74 ~~~~~~~g~~~~~~~~~vId~~~L~~~gli~-------~~vKVLG~G~l~k~l~Vka~~fSk~A~ekIeaAGG~v~~i~~ 146 (165)
T 1vq8_L 74 VTLLAADDVAEVEDGGFRVDVRDVVEEADDA-------DYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVELTDL 146 (165)
T ss_dssp TGGGTTSCCCC-----CEEEGGGTCTTCTTS-------SEEEEECCSCCCSCCEEEESEECHHHHHHHHHTTCEEEECTT
T ss_pred HHHhhhccccccCCCCeEECHHHHHHCCccC-------CceEEecCCccCCCEEEEEEecCHHHHHHHHHcCCEEEEeec
Confidence 3 344 389999999999983 479999999999999999999999999999999999998854
Q ss_pred ccccc
Q 024515 232 RKKWV 236 (266)
Q Consensus 232 ~k~~~ 236 (266)
-.+|.
T Consensus 147 ~~~~~ 151 (165)
T 1vq8_L 147 GEERQ 151 (165)
T ss_dssp TCCCC
T ss_pred hhhhc
Confidence 34443
No 6
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3e-35 Score=247.95 Aligned_cols=131 Identities=30% Similarity=0.347 Sum_probs=97.1
Q ss_pred CCcccceeeccccCCCCCcccCCCCCCCC-CCCCCCCCCccCCCCCeEee--------cceecCCCCCCCCCCC-ee-ee
Q 024515 85 SRKRGKRKGRGIAAGQGNSCGFGMRGQKS-RSGPGVRKGFEGGQMPLYRR--------IPKLRGIAGGMHAGLP-KY-VP 153 (266)
Q Consensus 85 arKkkkRvGRG~gSG~GKT~GrG~KGQka-RsG~~~r~GFEGGQtPl~rR--------lPK~rGf~~g~~~~r~-~y-~~ 153 (266)
++++|+|++||+ +||||||+||++ |+|+ +||||||||+|+| ||| +||++- +..+. .| .+
T Consensus 3 ~r~~k~rk~RG~-----~t~G~G~~gq~r~~~Gg---~G~aGgq~h~~~~~~k~~p~~lpK-~GF~~~-~~~~~~~~~~~ 72 (148)
T 2zkr_l 3 SRLRKTRKLRGH-----VSHGHGRIGKHRKHPGG---RGNAGGMHHHRINFDKYHPGYFGK-VGMKHY-HLKRNQSFCPT 72 (148)
T ss_dssp ---CHHHHTTTT-----SCSSCCSCSCC--CCSC---SSSTTTTTTTCSSCTTTC--------------------CCCCE
T ss_pred CccCCcccCCCC-----cCcCCCCCCCCCCCCCC---CCcccCCCCCEEeccccCCCcCCC-CCcCCC-Cccccceecce
Confidence 578889999996 899999999998 7664 8999999999999 778 699852 22223 45 89
Q ss_pred EecchhhhcCCCCCCeecHHH-H-HHCCCcCCCCCCcccCeEEEcCCccce-eeEEEEEecCHHHHHHHHHcCCEEEEe
Q 024515 154 VNLKDIEAAGFLEGDEVSLET-L-KKKGLINPSGRERKLPLKILGDGELSK-KLNFKARAFSTSAKEKLEAAGCTLTVL 229 (266)
Q Consensus 154 INL~~L~~~~l~~~~~I~~~~-L-~~~Gli~~~~~~~~~~VKVLG~Geltk-kl~Ika~~fSksAkekIEaAGGsV~~~ 229 (266)
|||++||+. ++++.+++++. | .+.++|+.. ...++||||+|+|++ +|+|+|+.||++|+|+||+|||+|+++
T Consensus 73 VNl~~L~~l-~~~~~~~~~~~~l~~~~~vI~~~---~~~~vKVLG~Gel~k~~l~Vka~~fSk~A~ekIeaAGG~v~~~ 147 (148)
T 2zkr_l 73 VNLDKPWTL-VSEQTRVNAAKNKTGVAPIIDVV---RSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147 (148)
T ss_dssp EETHHHHHH-TTTTTSSCTTTTEEEHHHHSTTC---SSSCCEEECCSCCCSSCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred EEHHHHHhh-hhcCcEEehhhhccccCCeEecc---ccCceEEecCCccccCCEEEEEEecCHHHHHHHHHcCCEEEec
Confidence 999999963 56777787764 3 477788642 135799999999998 999999999999999999999999875
No 7
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.94 E-value=6.5e-28 Score=203.64 Aligned_cols=130 Identities=30% Similarity=0.443 Sum_probs=103.1
Q ss_pred CCcccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCC---CCCeEeeccee-------cCCCCCCCCCCCeeeeE
Q 024515 85 SRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGG---QMPLYRRIPKL-------RGIAGGMHAGLPKYVPV 154 (266)
Q Consensus 85 arKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGG---QtPl~rRlPK~-------rGf~~g~~~~r~~y~~I 154 (266)
.|.+|.|+.||+ .|||+|+.||++.+|....+|++|| |.|+|.++.|| +||++. +.++++|.+|
T Consensus 3 ~r~~k~rk~rG~-----~s~g~G~~~khR~~G~~GGrG~aG~g~~~~H~~~~~~ky~p~~~pK~GF~n~-~~~~~~~~~V 76 (147)
T 3j21_L 3 RRRKKVRKLRGS-----HTHGWGCKKKHRGGGSKGGRGMAGTGKRNKSKWTWTIKYAPDHLGKRGFSRP-PEVQREVRVV 76 (147)
T ss_dssp CHHHHHTTTTCC-----SSTTSCSTTTSCSHHHHTSSTTTTSSCSSSSSSSCSSSSCSCCSCCCSCCCC-TTTCCCCCEE
T ss_pred ccccccccccCC-----CccCCCCCCCcCCCCCCCCCcccCCCccCcccEEEEeecCCCcCCcCCCCcc-ccccceeEEE
Confidence 356788999995 5799999998876655566999999 99988855444 477652 2235689999
Q ss_pred ecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcc-----cCeEEEcCCccceeeEEEEEecCHHHHHHHHHcCCEEEEe
Q 024515 155 NLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERK-----LPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 229 (266)
Q Consensus 155 NL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~-----~~VKVLG~Geltkkl~Ika~~fSksAkekIEaAGGsV~~~ 229 (266)
||++||+. + ++|.+.|+|...++.+. .++||||+|+|++||+|+|+.||++|+|+||+|||+|+++
T Consensus 77 NL~~L~~l-~--------~~L~~~gli~~~~~~~vid~~~~GvKVLG~G~l~~~v~Vka~~fS~~A~ekIeaaGG~v~~~ 147 (147)
T 3j21_L 77 NLKFIDEH-L--------DELMQMGIAYEEGGKIIVDVTQFADKVLGTGKLTRPLVIKARAFSPKAEEKIKAAGGEAVLV 147 (147)
T ss_dssp EHHHHHHT-T--------TTTTTSCCCSSSSBSEEEEGGGGCCEEECCSCCSSCEEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred EHHHHHHH-H--------HHHHHcCcccccCCcceecccccCcEEecCCccCcCEEEEEEecCHHHHHHHHHcCCEEEeC
Confidence 99999974 2 24888999875433211 2399999999999999999999999999999999999864
No 8
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=99.92 E-value=2.1e-26 Score=194.91 Aligned_cols=135 Identities=24% Similarity=0.303 Sum_probs=101.0
Q ss_pred CCcccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeecceec-------CCCCCCCCC--CCeeeeEe
Q 024515 85 SRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLR-------GIAGGMHAG--LPKYVPVN 155 (266)
Q Consensus 85 arKkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK~r-------Gf~~g~~~~--r~~y~~IN 155 (266)
.|.+|+|+.||+ .|||+|+.||++.+|....+|++|||+|+|.+|.||+ ||++ +|.. +..|.+||
T Consensus 3 ~r~~K~rk~RG~-----~s~G~G~~gkhR~~Gh~GGrG~AGg~~Hhr~~~~ky~p~~fGK~Gfr~-~h~~~n~~~~~~VN 76 (149)
T 4a17_K 3 SHLKKTRKLRGH-----VSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGMRT-FHLKKNPLHCPVVN 76 (149)
T ss_dssp GGGSHHHHHTTS-----SSTTSCSSSCSCCHHHHTSSTTTTTTTTTHHHHHHHSTTCSSCCSCCC-SSCCCGGGCCCEEE
T ss_pred ccccccccccCC-----CccCCCCCCCcCCCCCCCCCcccCCCcceEEeeeccCCCcCCCCCccC-CCccCCcceeeEEE
Confidence 367888999994 6799999999887666667999999999999998764 5543 1211 23468999
Q ss_pred cchhhhcCCCCCCeecHHHHHH-CCCcCCCCCCcccCeEEEcCCcc-ceeeEEEEEecCHHHHHHHHHcCCEEEEe
Q 024515 156 LKDIEAAGFLEGDEVSLETLKK-KGLINPSGRERKLPLKILGDGEL-SKKLNFKARAFSTSAKEKLEAAGCTLTVL 229 (266)
Q Consensus 156 L~~L~~~~l~~~~~I~~~~L~~-~Gli~~~~~~~~~~VKVLG~Gel-tkkl~Ika~~fSksAkekIEaAGGsV~~~ 229 (266)
|++||++ +++...+++..+.+ ..+|+. ....++||||+|+| +++|+|++..||++|+|+||+|||+|+++
T Consensus 77 LdkL~~l-~~~~~~~~~~~~~~~~~vId~---~~~g~~KvLG~G~l~~~~v~v~a~~fS~~A~~kIe~aGG~~~~~ 148 (149)
T 4a17_K 77 IDKLWSL-VSDATRQKYAEDKKKVPVIDV---TKAGFFKVLGKGRLPNQPVVVKAKYFSKTAERRIVAVGGACVLT 148 (149)
T ss_dssp GGGHHHH-SCHHHHHHHHHCCSSCCEEEH---HHHTCCEEECCSCCCSSCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHH-hhhhcchhhhhhcCCceEEEe---ccCCeEEEecCCccCCCCEEEEEeecCHHHHHHHHHcCCEEEEe
Confidence 9999974 44444444433111 113321 01247999999999 88999999999999999999999999875
No 9
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V
Probab=99.88 E-value=9.6e-24 Score=178.72 Aligned_cols=135 Identities=26% Similarity=0.212 Sum_probs=95.3
Q ss_pred CCcccceeeccccCCCCCcccCCCCCCC--CCCCCCCCCCccCCCCCeEeecceecCCCCCCCCCC------C--eeeeE
Q 024515 85 SRKRGKRKGRGIAAGQGNSCGFGMRGQK--SRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL------P--KYVPV 154 (266)
Q Consensus 85 arKkkkRvGRG~gSG~GKT~GrG~KGQk--aRsG~~~r~GFEGGQtPl~rRlPK~rGf~~g~~~~r------~--~y~~I 154 (266)
.|.+|.|+.||+ .|||+|+.|++ +|+| +|.+||+.|+|.++.||++-.+|++.++ . .+.+|
T Consensus 3 ~r~kKtrK~RG~-----~s~G~G~~gkhR~h~GG----rG~AGg~~Hh~~~~~Ky~p~~fGK~G~r~~h~~~n~~~~~~I 73 (149)
T 3o58_Y 3 SRFTKTRKHRGH-----VSAGKGRIGKHRKHPGG----RGMAGGEHHHRINMDKYHPGYFGKVGMRYFHKQQAHFWKPVL 73 (149)
T ss_dssp CSSGGGSSSSSC-----SSSBTTBSCCSSCSSSS----SSSCCCSSSSCCCSCCCTTSSSSCCSCCCCCCCCCCCCCCST
T ss_pred ccccccccccCC-----CccCCCCCCCCCCCCCC----CccccCccceeEEEeeeCCCccCCCCcccCcccccccccceE
Confidence 467889999996 56999997764 4444 8999999999999999864222333222 1 24699
Q ss_pred ecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCcc-ceeeEEEEEecCHHHHHHHHHcCCEEEEe
Q 024515 155 NLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGEL-SKKLNFKARAFSTSAKEKLEAAGCTLTVL 229 (266)
Q Consensus 155 NL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Gel-tkkl~Ika~~fSksAkekIEaAGGsV~~~ 229 (266)
||++||++ +++....+..+..+.+-....|.....++||||+|+| +++|+|++..||++|+|+||+|||+|+++
T Consensus 74 NldkL~~l-v~~~~~~~~a~~~~~~~~~vID~~~~g~vKVLG~G~l~~~~v~Vka~~fS~~A~ekIe~aGG~~~~~ 148 (149)
T 3o58_Y 74 NLDKLWTL-IPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPNVPVIVKARFVSKLAEEKIRAAGGVVELI 148 (149)
T ss_dssp TTTHHHHC-SSCCSCSSCTTSSTTSSCCBCCCSSSCSCCCCCCCCCCSCCEEECSSCCTTTTHHHHGGGSCEEECC
T ss_pred EHHHHHHH-hHHHHhhhhhhhccCCCCcEEEEecccceEEEcCCccCCCCEEEEEeecCHHHHHHHHHcCCEEEEc
Confidence 99999974 5444333322100011111111122347999999999 89999999999999999999999999875
No 10
>3iz5_O 60S ribosomal protein L27A (L15P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_O
Probab=99.83 E-value=5.5e-23 Score=173.22 Aligned_cols=128 Identities=25% Similarity=0.276 Sum_probs=91.9
Q ss_pred CCcccceeeccccCCCCCcccCCCCCCC--CCCCCCCCCCccCCCCCeEeecceec-------CCCCCCCCCC--Ceeee
Q 024515 85 SRKRGKRKGRGIAAGQGNSCGFGMRGQK--SRSGPGVRKGFEGGQMPLYRRIPKLR-------GIAGGMHAGL--PKYVP 153 (266)
Q Consensus 85 arKkkkRvGRG~gSG~GKT~GrG~KGQk--aRsG~~~r~GFEGGQtPl~rRlPK~r-------Gf~~g~~~~r--~~y~~ 153 (266)
.|.+|.|+.||+ .|||+|+.|++ +|+| +|.+||+.|+|.++.||+ ||++ +|..+ ..+.+
T Consensus 3 ~r~kKtrK~RG~-----~s~G~G~~gkhR~h~GG----rG~AGg~~Hh~~~~~Ky~p~~fGK~G~r~-~h~~~n~~~~~~ 72 (144)
T 3iz5_O 3 TRFKKNRKKRGH-----VSAGHGRIGKHRKHPGG----RGNAGGMHHHRILFDKYHPGYFGKVGMRY-FHRLSNRFHCPA 72 (144)
T ss_dssp SSSSSSCCSSSC-----STTTTSCCCSSCSCCSC----CCSTTTSCCCEEEEETHHHHHTSTTCTTS-CCCSSCTTSCEE
T ss_pred ccccccccccCC-----CccCCCCCCCCCCCCCC----CccccCccceeEEEEeeCCCccCCCCccC-CCccccccccce
Confidence 467888999995 56999996653 4444 899999999999998874 4432 12222 23579
Q ss_pred EecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCcc--ceeeEEEEEecCHHHHHHHHHcCCEEEEe
Q 024515 154 VNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGEL--SKKLNFKARAFSTSAKEKLEAAGCTLTVL 229 (266)
Q Consensus 154 INL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Gel--tkkl~Ika~~fSksAkekIEaAGGsV~~~ 229 (266)
|||++||++ +++.. . .+.+-+...|.....++||||+|+| +++|+|+|..||++|+|+||+|||+|+++
T Consensus 73 VNl~kL~~l-v~~~~-a-----~~~~~~~vIDl~~~G~~KvLG~G~l~~~~~v~Vka~~fS~~A~ekIe~aGG~v~~~ 143 (144)
T 3iz5_O 73 VNVERLWSM-VPAEA-G-----AGAGKAPVIDVTQFGYTKVLGKGMLPPERPIVVKAKLISKVAEKKIKAAGGAVLLT 143 (144)
T ss_dssp EGGGTSTTC-TTSSE-E-----EEECCSCCCSCCEEEESEECHHHHSTTCTTCCCEECGGGSSCSCCCSSCCCCCCCC
T ss_pred EEHHHHHHH-hHHhh-h-----ccCCCceEEEeeccCcEEEeCCCccCCccCEEEEEeecCHHHHHHHHHcCCEEEEc
Confidence 999999974 43322 1 1112111111112346999999999 89999999999999999999999999764
No 11
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.76 E-value=1.4e-19 Score=148.21 Aligned_cols=79 Identities=24% Similarity=0.340 Sum_probs=69.5
Q ss_pred CCCeEeecceecCCCCCCCCCCCeeeeEecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeEE
Q 024515 127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNF 206 (266)
Q Consensus 127 QtPl~rRlPK~rGf~~g~~~~r~~y~~INL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~I 206 (266)
.||+|+|+|| |||.+ +++|.+|||++|++ .++++++|++ ++||||+|+++++++|
T Consensus 26 ~~Pl~rrlpK-rgF~~-----r~~~~~VnL~~L~~-~~~~g~~i~~------------------~vKVLg~G~l~~kl~V 80 (120)
T 3j21_P 26 GVKIWKDVAW-RLERP-----RRQRAEVNVSKINR-YANDGEMIVV------------------PGSVLGAGKLEKKVIV 80 (120)
T ss_dssp CCSHHHHHHH-HHHSC-----TTSSEEEEHHHHTT-SSCTTCEEEE------------------EEEEECSSCCCSCCEE
T ss_pred CCcHHHHHHh-hcCCC-----CCcceeEEHHHHHH-HHhcCCEEEE------------------EEEEcCCCeecCCEEE
Confidence 5899999999 69974 56799999999986 3566666652 5899999999999999
Q ss_pred EEEecCHHHHHHHHHcCCEEEEec
Q 024515 207 KARAFSTSAKEKLEAAGCTLTVLP 230 (266)
Q Consensus 207 ka~~fSksAkekIEaAGGsV~~~~ 230 (266)
+++.||++|+|+||+|||+|+++.
T Consensus 81 ~a~~fS~~A~ekIe~AGG~v~~~~ 104 (120)
T 3j21_P 81 AAWKFSETARRKIIEAGGEAITIE 104 (120)
T ss_dssp EEEEECHHHHHHHTTTSSCEEEST
T ss_pred EEeccCHHHHHHHHHcCCEEEEeH
Confidence 999999999999999999999874
No 12
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Probab=99.69 E-value=5.3e-18 Score=138.01 Aligned_cols=79 Identities=27% Similarity=0.332 Sum_probs=67.6
Q ss_pred CCCCeEeecceecCCCCCCCCCCCeeeeEecchhhhcCCCCCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccceeeE
Q 024515 126 GQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLN 205 (266)
Q Consensus 126 GQtPl~rRlPK~rGf~~g~~~~r~~y~~INL~~L~~~~l~~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltkkl~ 205 (266)
-|||||||+|| || + .++.+|.+|||++|++. ++++++| + .++||||+|+++++++
T Consensus 22 ~~~Pl~rRlPK-rG-~----~~~~~~~~VnL~~L~~~-~~~g~~i---------l---------v~vKVLg~G~l~k~l~ 76 (116)
T 1vq8_O 22 SGGAVWGDVAE-RL-E----KPRRTHAEVNLGRIERY-AQEDETV---------V---------VPGKVLGSGVLQKDVT 76 (116)
T ss_dssp SSCHHHHHHHH-HH-T----SCTTTSEEEEHHHHHHH-CCTTSEE---------E---------EEEEEECCSCCCSCCE
T ss_pred cCCCHhhhccc-CC-C----CCCceeeeEeHHHHHHH-ccCCCEE---------E---------EEEEEeeCCeecCCEE
Confidence 48999999999 68 2 34678999999999863 5666655 1 2699999999999999
Q ss_pred EEEEecCHHHHHHHHHcCCEEEEec
Q 024515 206 FKARAFSTSAKEKLEAAGCTLTVLP 230 (266)
Q Consensus 206 Ika~~fSksAkekIEaAGGsV~~~~ 230 (266)
|++++||++|+|+||+| |+|+++.
T Consensus 77 V~a~~fSk~A~ekIeaA-G~v~~~~ 100 (116)
T 1vq8_O 77 VAAVDFSGTAETKIDQV-GEAVSLE 100 (116)
T ss_dssp EEEEEECHHHHHHHHHH-SEEEEHH
T ss_pred EEEEecCHHHHHHHHHc-CeEEEhH
Confidence 99999999999999999 9999874
No 13
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.54 E-value=1.1e-15 Score=133.62 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=65.7
Q ss_pred CCCeEeecceecCCCCCCCCCCCeeeeEecchhhhcCCC--CCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccce--
Q 024515 127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL--EGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSK-- 202 (266)
Q Consensus 127 QtPl~rRlPK~rGf~~g~~~~r~~y~~INL~~L~~~~l~--~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Geltk-- 202 (266)
.-|||+|||| |||.+ +.+|.+|||++|+. +. ++++.+ ++ ...+||||+|+|++
T Consensus 40 ~apl~rrlpK-RgF~s-----r~~y~~VNLs~L~~--~~~~~g~~~~--------ii-------v~~~KVLg~GeL~kvp 96 (188)
T 2zkr_o 40 NSTFNQVVLK-RLFMS-----RTNRPPLSLSRMIR--KMKLPGRENK--------TA-------VVVGTVTDDVRILEVP 96 (188)
T ss_dssp CCHHHHHHHH-HHHSC-----TTTSCEEEHHHHHS--CSSSCCSTTS--------EE-------EEEEEEECSSCCCCCS
T ss_pred CCCHHHHHHH-hhCCC-----ccceeeeeHHHHHH--HhhhcCCCCc--------EE-------EeecEEECCceecccC
Confidence 3599999999 79974 56899999999985 32 222211 11 23579999999999
Q ss_pred eeEEEEEecCHHHHHHHHHcCCEEEEec
Q 024515 203 KLNFKARAFSTSAKEKLEAAGCTLTVLP 230 (266)
Q Consensus 203 kl~Ika~~fSksAkekIEaAGGsV~~~~ 230 (266)
+|+|+|+.||++|+|+||+|||+|+++.
T Consensus 97 kLtV~A~~fSksArekIEaAGG~v~~id 124 (188)
T 2zkr_o 97 KLKVCALRVSSRARSRILKAGGKILTFD 124 (188)
T ss_dssp SCCEEEEEECHHHHHHHHHHSSCEEEHH
T ss_pred CeEEEEeecCHHHHHHHHHcCCEEEEhH
Confidence 9999999999999999999999999864
No 14
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=99.51 E-value=2.4e-16 Score=129.32 Aligned_cols=79 Identities=20% Similarity=0.218 Sum_probs=65.9
Q ss_pred CCeEeecceecCCCCCCCCCCCeeeeEecchhhhcCCC----CCCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccc--
Q 024515 128 MPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFL----EGDEVSLETLKKKGLINPSGRERKLPLKILGDGELS-- 201 (266)
Q Consensus 128 tPl~rRlPK~rGf~~g~~~~r~~y~~INL~~L~~~~l~----~~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Gelt-- 201 (266)
-|||+|+|| |||.+ +.+|.+|||++|++. ++ ++++| ...+||||+|+++
T Consensus 22 apl~rrvpK-RgF~s-----r~~~~~VnLs~L~~~-~~~~g~~g~~v------------------vv~~KVlg~G~l~~~ 76 (121)
T 3jyw_O 22 APFNKVVLK-ALFLS-----KINRPPVSVSRIARA-LKQEGAANKTV------------------VVVGTVTDDARIFEF 76 (121)
T ss_dssp CHHHHHHHH-TTTSC-----STTSCCBCHHHHHHH-TTTTSCSSSEE------------------EESSCBCCCSCCCSS
T ss_pred ChHHHHHHH-HHCCC-----CCccceEEHHHHHHH-hhccCCCCCEE------------------EEEEEEcCCceEccc
Confidence 589999999 79973 568999999999863 33 23322 2468999999998
Q ss_pred eeeEEEEEecCHHHHHHHHHcCCEEEEecC
Q 024515 202 KKLNFKARAFSTSAKEKLEAAGCTLTVLPG 231 (266)
Q Consensus 202 kkl~Ika~~fSksAkekIEaAGGsV~~~~~ 231 (266)
.+++|+++.||++|+++||+|||+|+++..
T Consensus 77 ~kl~V~a~~fS~~A~~kIe~AGG~~~~~dq 106 (121)
T 3jyw_O 77 PKTTVAALRFTAGARAKIVKAGGECITLDQ 106 (121)
T ss_dssp SCCCEECSSBCTTTTTHHHHHTCCBCCSTT
T ss_pred CCEEEEEEecCHHHHHHHHHcCCEEEEHHH
Confidence 799999999999999999999999988753
No 15
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=99.38 E-value=1e-13 Score=121.21 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=65.2
Q ss_pred CCCeEeecceecCCCCCCCCCCCeeeeEecchhhhcCCCC---CCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccc--
Q 024515 127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE---GDEVSLETLKKKGLINPSGRERKLPLKILGDGELS-- 201 (266)
Q Consensus 127 QtPl~rRlPK~rGf~~g~~~~r~~y~~INL~~L~~~~l~~---~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Gelt-- 201 (266)
.-|+|+++|| |+|.+ +.+|.+|||++|++. +++ +++| ...+||||+|+|+
T Consensus 41 ~apf~r~V~K-RLf~s-----r~~r~pVnLsrL~r~-~k~~e~gk~V------------------Vv~gKVLg~G~L~~v 95 (188)
T 3iz5_R 41 KSKFNAVILK-RLFMS-----KTNRPPLSMRRLSNF-MKGKEEKNIA------------------VVVGTITDDMRIQEV 95 (188)
T ss_dssp SCHHHHHHHH-HHHSC-----TTTCCEEEHHHHHTT-SCSSSTTCEE------------------EEEEEEECCCCSSCC
T ss_pred CChHHHHHHH-HHcCC-----ccccCcccHHHHHHH-hccccCCCEE------------------EEEEEEcCCceEccc
Confidence 4689999999 79962 568999999999863 433 3333 3478999999998
Q ss_pred eeeEEEEEecCHHHHHHHHHcCCEEEEe
Q 024515 202 KKLNFKARAFSTSAKEKLEAAGCTLTVL 229 (266)
Q Consensus 202 kkl~Ika~~fSksAkekIEaAGGsV~~~ 229 (266)
.+|+|+|+.||++|+++||+|||+|+++
T Consensus 96 ~kl~V~A~~fS~sA~ekIe~AGG~v~~~ 123 (188)
T 3iz5_R 96 PAMKVTALRFTETARARIINAGGECLTF 123 (188)
T ss_dssp SSEEEEEEECCHHHHHHHHTTSEEEEEH
T ss_pred CCEEEEEeecCHHHHHHHHHcCCEEEEH
Confidence 6899999999999999999999999986
No 16
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R 3o58_R 3o5h_R 3u5e_Q 3u5i_Q 4b6a_Q
Probab=99.35 E-value=1e-13 Score=120.97 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=65.1
Q ss_pred CCCeEeecceecCCCCCCCCCCCeeeeEecchhhhcCCCC----CCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccc-
Q 024515 127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE----GDEVSLETLKKKGLINPSGRERKLPLKILGDGELS- 201 (266)
Q Consensus 127 QtPl~rRlPK~rGf~~g~~~~r~~y~~INL~~L~~~~l~~----~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Gelt- 201 (266)
.-|+|+++|| |+|.+ +.+|.+|||++|+.. +++ +++| ...+||||+|+|+
T Consensus 41 ~apf~r~V~K-RLf~s-----r~~r~~VnLsrI~r~-~k~~g~~g~~v------------------Vv~gKVLg~G~L~~ 95 (186)
T 3izc_R 41 DAPFNKVVLK-ALFLS-----KINRPPVSVSRIARA-LKQEGAANKTV------------------VVVGTVTDDARIFE 95 (186)
T ss_dssp CCHHHHHHHH-HHHSC-----TTTCCEEEHHHHHHH-TTTTSSSSCEE------------------EESSEEECCCCSSC
T ss_pred CChHHHHHHH-HHhCC-----CcccCcccHHHHHHH-hhccCCCCCEE------------------EEEeEEecCceEcc
Confidence 4689999999 79962 568999999999863 432 2222 3478999999998
Q ss_pred -eeeEEEEEecCHHHHHHHHHcCCEEEEe
Q 024515 202 -KKLNFKARAFSTSAKEKLEAAGCTLTVL 229 (266)
Q Consensus 202 -kkl~Ika~~fSksAkekIEaAGGsV~~~ 229 (266)
.+|+|+|+.||++|+++||+|||+|+++
T Consensus 96 v~kl~V~A~~fS~sA~ekIe~AGG~v~~~ 124 (186)
T 3izc_R 96 FPKTTVAALRFTAGARAKIVKAGGECITL 124 (186)
T ss_dssp CCCEEEEESCCCHHHHHHHHHHSEECCCS
T ss_pred cCCEEEEEEecCHHHHHHHHHcCCEEEEH
Confidence 7999999999999999999999999876
No 17
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N
Probab=99.35 E-value=7.5e-14 Score=121.38 Aligned_cols=79 Identities=22% Similarity=0.228 Sum_probs=65.5
Q ss_pred CCCeEeecceecCCCCCCCCCCCeeeeEecchhhhcCCCC---CCeecHHHHHHCCCcCCCCCCcccCeEEEcCCccc--
Q 024515 127 QMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE---GDEVSLETLKKKGLINPSGRERKLPLKILGDGELS-- 201 (266)
Q Consensus 127 QtPl~rRlPK~rGf~~g~~~~r~~y~~INL~~L~~~~l~~---~~~I~~~~L~~~Gli~~~~~~~~~~VKVLG~Gelt-- 201 (266)
.-|+|+++|| |+|.+ +.+|.+|||++|++. +++ +++| ...+||||+|+|+
T Consensus 42 ~apf~r~V~K-RLf~s-----r~nr~pVnLsrI~r~-~~~~e~gk~v------------------Vv~gKVLg~G~l~~v 96 (181)
T 4a17_N 42 DSKFNQNILK-RLSSS-----RLNKFPLSLSRIVKN-LNETNKEQVI------------------VSTSTVTNDERLLTV 96 (181)
T ss_dssp CCHHHHHHHH-HHSCC-----GGGSCCEEHHHHHHS-CCHHHHHSEE------------------EESSEEECCTTCCSC
T ss_pred CChHHHHHHH-HHcCC-----ccccCcccHHHHHHH-hccccCCCEE------------------EEEEEEcCCceEccc
Confidence 4689999999 79862 568999999999863 432 2222 3468999999998
Q ss_pred eeeEEEEEecCHHHHHHHHHcCCEEEEec
Q 024515 202 KKLNFKARAFSTSAKEKLEAAGCTLTVLP 230 (266)
Q Consensus 202 kkl~Ika~~fSksAkekIEaAGGsV~~~~ 230 (266)
.+|+|+|+.||++|+++||+|||+|+++.
T Consensus 97 ~kl~V~A~~fS~sA~ekIe~AGG~v~~~d 125 (181)
T 4a17_N 97 PKLTVCALKFTETARKRILAAGGKCLTFD 125 (181)
T ss_dssp CCCEEECSEECHHHHHHHHTTTCEEECHH
T ss_pred CCEEEEEeecCHHHHHHHHHcCCEEEEhH
Confidence 78999999999999999999999999874
No 18
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=94.02 E-value=0.014 Score=49.70 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=35.7
Q ss_pred cccceeeccccCCCCCcccCCCCCCCCCCCCCCCCCccCCCCCeEeecce
Q 024515 87 KRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPK 136 (266)
Q Consensus 87 KkkkRvGRG~gSG~GKT~GrG~KGQkaRsG~~~r~GFEGGQtPl~rRlPK 136 (266)
.+|+|+-|| |+++|+|++|+.+-.|.+..++..||+.|.|..|-|
T Consensus 2 ~~k~~k~R~-----gRg~GsG~~GKt~grGhkGqk~raGg~~~~~~pl~k 46 (165)
T 1vq8_L 2 TSKKKRQRG-----SRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEP 46 (165)
T ss_dssp CCHHHHCTT-----CSSTTCSSTTSSCSGGGGTSSTTTTTTTTTCTTSCC
T ss_pred CccccCcCC-----ccCCCCCCCCCCCCCCCCCcccccCCCcCCCceeeE
Confidence 468899998 477999988887776677778999999998864444
No 19
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K
Probab=88.65 E-value=0.031 Score=46.87 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=20.2
Q ss_pred CCCcccCCCCCCCCCCCCC--CCCCccCC
Q 024515 100 QGNSCGFGMRGQKSRSGPG--VRKGFEGG 126 (266)
Q Consensus 100 ~GKT~GrG~KGQkaRsG~~--~r~GFEGG 126 (266)
.|++.|+||+|+..++|+. .+.+|+..
T Consensus 22 ~gkhR~~Gh~GGrG~AGg~~Hhr~~~~ky 50 (149)
T 4a17_K 22 VGKHRKGGCRGGRGKAGGMHHHRILMEKW 50 (149)
T ss_dssp SSCSCCHHHHTSSTTTTTTTTTHHHHHHH
T ss_pred CCCcCCCCCCCCCcccCCCcceEEeeecc
Confidence 4788999999999999865 33456654
Done!