RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 024515
(266 letters)
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 254 bits (650), Expect = 2e-85
Identities = 183/265 (69%), Positives = 208/265 (78%), Gaps = 9/265 (3%)
Query: 1 MASLLSVTANSLSFPSTPFKGNVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLNQAASASA 60
M++ + +SL ++PFKGNVKTL+ KP C+ ++ + +++V+N+AASA
Sbjct: 1 MSAASLIPVSSLPSLASPFKGNVKTLVAKP----CLCPCLKIQRTKLRVSVVNKAASAYN 56
Query: 61 SAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVR 120
G FRL+NLGPQPGSRKR KRKGRGIAAGQG SCGFGMRGQKSRSGPG+
Sbjct: 57 VKSSGEN-----VFRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIM 111
Query: 121 KGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGL 180
+GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +
Sbjct: 112 RGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRV 171
Query: 181 INPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSV 240
INPSGRERKLPLKIL DGELSKKL KA AFSTSAKEKLE AGC+L VLPGRKKWVKPSV
Sbjct: 172 INPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGRKKWVKPSV 231
Query: 241 AKNLARAEEYFAKKRAAAAASDSTS 265
AKNLARAEEYFAKKR AS+
Sbjct: 232 AKNLARAEEYFAKKRGGETASEPAP 256
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
3fik_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L*
3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L
1vs6_L 2aw4_L 2awb_L 1vt2_L 2i2v_L ...
Length = 143
Score = 181 bits (461), Expect = 3e-58
Identities = 62/151 (41%), Positives = 82/151 (54%), Gaps = 11/151 (7%)
Query: 75 RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 134
RLN L P GS+K GKR GRGI +G G + G G +GQKSRSG GVR+GFEGGQMPLYRR+
Sbjct: 1 RLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRL 60
Query: 135 PKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKI 194
PK G + L D+ +EG V L TLK +I + K+
Sbjct: 61 PKF----GFTSRKAAITAEIRLSDLAK---VEGGVVDLNTLKAANII----GIQIEFAKV 109
Query: 195 LGDGELSKKLNFKARAFSTSAKEKLEAAGCT 225
+ GE++ + + + A+ +EAAG
Sbjct: 110 ILAGEVTTPVTVRGLRVTKGARAAIEAAGGK 140
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P
2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P
2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Length = 150
Score = 175 bits (446), Expect = 8e-56
Identities = 67/160 (41%), Positives = 89/160 (55%), Gaps = 14/160 (8%)
Query: 75 RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVR-KGFEGGQMPLYRR 133
+L++L P PG+ KR KR GRG +G G + G +GQKSRSG + FEGG+ R
Sbjct: 2 KLSDLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMR 61
Query: 134 IPKLRGIAGGMHAGL--PKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLP 191
+PK RG+ G + + P+Y VNLKD+ EV+ E L + GL+ +
Sbjct: 62 LPK-RGMQGQVPGEIKRPRYQGVNLKDLARF----EGEVTPELLVRAGLLK-----KGYR 111
Query: 192 LKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPG 231
LKILG+GE K L A AFS SA EKL+AAG +L
Sbjct: 112 LKILGEGEA-KPLKVVAHAFSKSALEKLKAAGGEPVLLEA 150
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J*
1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I*
3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M
Length = 156
Score = 168 bits (428), Expect = 5e-53
Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 13/160 (8%)
Query: 75 RLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI 134
+L++L P PGSRK KR GRG G + G G +GQKSRSG G FEGG+ L R+
Sbjct: 2 KLHDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARL 60
Query: 135 PKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKI 194
PK G + Y V L ++ LE +TL+ L+ R + P+K+
Sbjct: 61 PKR-----GFNNVGTTYEVVKLSQLQD---LEDTTFDRDTLEAYRLV----RRKNRPVKL 108
Query: 195 LGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKK 234
L GE+S+ + A S +A + +EAAG + + + +
Sbjct: 109 LASGEISRAVTVHVDAASAAAIKAVEAAGGRVVLPEVQTQ 148
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L*
1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L*
1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L*
1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Length = 165
Score = 96.5 bits (240), Expect = 5e-25
Identities = 33/172 (19%), Positives = 65/172 (37%), Gaps = 17/172 (9%)
Query: 85 SRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGM 144
S+K+ +R R G RG R G G G + + + + K G
Sbjct: 3 SKKKRQRGSRTHGGG----SHKNRRGAGHRGGRG-DAGRDKHEFHNHEPLGK-----SGF 52
Query: 145 HAGLP---KYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSG----RERKLPLKILGD 197
+ +++++I+ L + E ++ + +K+LG
Sbjct: 53 KRPQKVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGA 112
Query: 198 GELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARAEE 249
G++ +L A FS A+EK+E AG ++ + ++ + A A+E
Sbjct: 113 GQVRHELTLIADDFSEGAREKVEGAGGSVELTDLGEERQAEAEETEDADADE 164
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome,
ribosome, eukaryotic initiation factor 60S, translation,
large ribosomal subunit; 3.52A {Tetrahymena thermophila}
PDB: 4a1a_K 4a1c_K 4a1e_K
Length = 149
Score = 61.7 bits (149), Expect = 4e-12
Identities = 35/148 (23%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 85 SRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRI----PKLRGI 140
S + RK RG S G G G+ + G +G GG + P G
Sbjct: 3 SHLKKTRKLRG-----HVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGK 57
Query: 141 AGGMHAGLPK----YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILG 196
G L K VN+ + + L D + + K + + K+LG
Sbjct: 58 LGMRTFHLKKNPLHCPVVNIDKLWS---LVSDATRQKYAEDKKKVPVIDVTKAGFFKVLG 114
Query: 197 DGELSKK-LNFKARAFSTSAKEKLEAAG 223
G L + + KA+ FS +A+ ++ A G
Sbjct: 115 KGRLPNQPVVVKAKYFSKTAERRIVAVG 142
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 148
Score = 55.1 bits (132), Expect = 8e-10
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 16/147 (10%)
Query: 85 SRKRGKRKGRGIAAGQGNSCGFGMRGQ--KSRSGPGVRKGFEGGQMPLYRRIPKLRGIAG 142
SR R RK RG S G G G+ K G G G ++ + P G G
Sbjct: 3 SRLRKTRKLRG-----HVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVG 57
Query: 143 --GMHAGLPKYV--PVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKL-PLKILGD 197
H + VNL L ++ + K K + P + K+LG
Sbjct: 58 MKHYHLKRNQSFCPTVNLDKPWT---LVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGK 114
Query: 198 GELSKK-LNFKARAFSTSAKEKLEAAG 223
G+L K+ + KA+ FS A+EK+++ G
Sbjct: 115 GKLPKQPVIVKAKFFSRRAEEKIKSVG 141
>3iz5_O 60S ribosomal protein L27A (L15P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_O
Length = 144
Score = 55.0 bits (132), Expect = 8e-10
Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 16/145 (11%)
Query: 85 SRKRGKRKGRG-IAAGQGNSCGF-GMRGQKSRSGPG--VRKGFEGGQMPLYRRIPKLRGI 140
+R + RK RG ++AG G G + +G R F+ + ++
Sbjct: 3 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYF- 61
Query: 141 AGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGEL 200
+ VN++ + + + E K + + K+LG G L
Sbjct: 62 --HRLSNRFHCPAVNVERLWS---MVPAEAGAGAGKAPVI----DVTQFGYTKVLGKGML 112
Query: 201 SKK--LNFKARAFSTSAKEKLEAAG 223
+ + KA+ S A++K++AAG
Sbjct: 113 PPERPIVVKAKLISKVAEKKIKAAG 137
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O*
1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O*
1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O*
1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...
Length = 116
Score = 51.2 bits (123), Expect = 9e-09
Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 29/111 (26%)
Query: 120 RKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK--YVPVNLKDIEAAGFLEGDEVSLETLKK 177
+ ++ + + P+ + VNL IE + + DE +
Sbjct: 16 KSAARSSGGAVWGDVAER--------LEKPRRTHAEVNLGRIER--YAQEDETVV----- 60
Query: 178 KGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTV 228
+P K+LG G L K + A FS +A+ K++ G +++
Sbjct: 61 ------------VPGKVLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAVSL 99
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome;
4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O
3izs_O 3u5e_a 3u5i_a 1s1i_V 3jyw_V
Length = 149
Score = 45.1 bits (106), Expect = 3e-06
Identities = 37/147 (25%), Positives = 47/147 (31%), Gaps = 15/147 (10%)
Query: 85 SRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRG---IA 141
SR RK RG S G G G+ + G +G GG+ + K
Sbjct: 3 SRFTKTRKHRG-----HVSAGKGRIGKHRKHPGG--RGMAGGEHHHRINMDKYHPGYFGK 55
Query: 142 GGMH----AGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGD 197
GM + PV D E K KILG
Sbjct: 56 VGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGK 115
Query: 198 GELSKK-LNFKARAFSTSAKEKLEAAG 223
G + + KAR S A+EK+ AAG
Sbjct: 116 GRIPNVPVIVKARFVSKLAEEKIRAAG 142
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.9 bits (75), Expect = 0.13
Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 27/134 (20%)
Query: 90 KRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGF-----EGGQMPLYRRIPKLRGIAGG- 143
K G+ A S GF GQK V + + Y R +
Sbjct: 1431 TLKTDGVRAVSITSFGF---GQKGGQAIVVHPDYLYGAITEDRYNEYVAKVSAREKSAYK 1487
Query: 144 -MHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSK 202
H G+ K+ A + + E + ++P R + + S
Sbjct: 1488 FFHNGMIYNKLFVSKE--HAPYTDELEEDV-------YLDPLAR--------VSKDKKSG 1530
Query: 203 KLNFKARAFSTSAK 216
L F ++ +
Sbjct: 1531 SLTFNSKNIQSKDS 1544
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 30.3 bits (69), Expect = 0.28
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 19/108 (17%)
Query: 153 PVNLKDIEAAGF--LEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELS-------KK 203
++ +E GF + D + L L D E + +
Sbjct: 39 KEKIELLEDEGFDAVIADPTDESFYRSLDL-----EGVSAVLITGSDDEFNLKILKALRS 93
Query: 204 LNFK---ARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARAE 248
++ R S KE+ E AG L VL VK + + + E
Sbjct: 94 VSDVYAIVRVSSPKKKEEFEEAGANLVVLVADA--VKQAFMDKIKKME 139
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_O
Length = 121
Score = 28.4 bits (63), Expect = 1.2
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 169 EVSLETLKKKGLINPSGRERKLPL---KILGDGELSK--KLNFKARAFSTSAKEKLEAAG 223
VS+ + + + G K + + D + + K A F+ A+ K+ AG
Sbjct: 41 PVSVSRIARA--LKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAG 98
Query: 224 CT 225
Sbjct: 99 GE 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 1.5
Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 51/123 (41%)
Query: 5 LSVTANSLSFP--STPFKG-NVKTLMPKPPSSLCVPLKVQQRNKPPQLTVLN----QAAS 57
+S A + P T F G +++ L + + L
Sbjct: 448 VSFNAKDIQIPVYDT-FDGSDLRVLSGSISERIV-----------DCIIRLPVKWETTTQ 495
Query: 58 ASASAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGP 117
A+ I+ + GP G + G G+ +++ G
Sbjct: 496 FKATHIL-------------DFGP-------------------GGASGLGVLTHRNKDGT 523
Query: 118 GVR 120
GVR
Sbjct: 524 GVR 526
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G*
1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G*
1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G*
2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ...
Length = 272
Score = 28.6 bits (65), Expect = 1.7
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 138 RGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKG 179
RG+ G +H+ + K + ++ A G EV + + K
Sbjct: 75 RGLCGAIHSSVAKQMKSEAANLAA----AGKEVKIIGVGDKI 112
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 29.2 bits (66), Expect = 1.7
Identities = 8/57 (14%), Positives = 12/57 (21%), Gaps = 5/57 (8%)
Query: 141 AGGMHAG-----LPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPL 192
G M + L + EV K +N E+
Sbjct: 62 GGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINAN 118
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_N 4a1c_N 4a1e_N
Length = 181
Score = 28.5 bits (63), Expect = 1.7
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 169 EVSLETLKKKGLINPSGRERKLPLKILGDGELSK--KLNFKARAFSTSAKEKLEAAGCTL 226
+SL + K + + D L KL A F+ +A++++ AAG
Sbjct: 62 PLSLSRIVKNLNETNKEQVIVSTSTVTNDERLLTVPKLTVCALKFTETARKRILAAGGKC 121
Query: 227 TVL 229
Sbjct: 122 LTF 124
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Length = 405
Score = 27.5 bits (61), Expect = 4.6
Identities = 10/84 (11%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 185 GRERKLPLKI-LGDGELSKKLNFKARAFSTSAKE-------KLEAAGCTLTVLPGRKKWV 236
G E L++ +++++ F + + +A+E + +++ +
Sbjct: 31 GVEEDQTLELPTSAKDIAEQNGFDIKGYRFTAREEQTRKRRIVRVGAIQNSIVIPTTAPI 90
Query: 237 KPSVAKNLARAEEYFAKKRAAAAA 260
+ + + +AAA A
Sbjct: 91 EKQREAIWNKVKTMI---KAAAEA 111
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 26.6 bits (59), Expect = 5.2
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 149 PKYVPVNLKDIEAAGF--LEGDEVSLETLKK------KGLINPSGRERKLPLKILGDGEL 200
P+ L+ + GD LKK + ++ S + +L ++
Sbjct: 36 PEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDM 95
Query: 201 SKKLNFKARAFSTSAKEKLEAAGCTLTVLP 230
S + + K++ + + P
Sbjct: 96 SSDVKTVLAVSDSKNLNKIKMVHPDIILSP 125
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 26.5 bits (59), Expect = 6.4
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 200 LSKKLNFK---ARAFSTSAKEKLEAAGCTLTVLP 230
L K+L+ +A + + LE G + P
Sbjct: 91 LLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHP 124
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 27.0 bits (60), Expect = 7.6
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 164 FLEGDEVSLETLKK------KGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKE 217
F+ GD + L+K + +I + + ILG ++ + + A A E
Sbjct: 159 FVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIE 218
Query: 218 KLEAAGCTLTVLPGR 232
+L AG + P
Sbjct: 219 QLRMAGADQVISPFV 233
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 26.2 bits (58), Expect = 8.8
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 165 LEGDEVSLETLKKKGLIN 182
+G V+ T+ K +I
Sbjct: 19 PKGQPVTPATVSKPAVIV 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.376
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,939,824
Number of extensions: 242507
Number of successful extensions: 436
Number of sequences better than 10.0: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 28
Length of query: 266
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,133,061
Effective search space: 719152614
Effective search space used: 719152614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.8 bits)