RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 024515
         (266 letters)



>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p)
           {Escherichia coli [TaxId: 562]}
          Length = 140

 Score =  124 bits (312), Expect = 2e-36
 Identities = 59/150 (39%), Positives = 80/150 (53%), Gaps = 11/150 (7%)

Query: 77  NNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPK 136
           N L P  GS+K GKR GRGI +G G + G G +GQKSRSG GVR+GFEGGQMPLYRR+PK
Sbjct: 1   NTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPK 60

Query: 137 LRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILG 196
                            + L D+     +EG  V L TLK   +I      +    K++ 
Sbjct: 61  FG----FTSRKAAITAEIRLSDLA---KVEGGVVDLNTLKAANIIG----IQIEFAKVIL 109

Query: 197 DGELSKKLNFKARAFSTSAKEKLEAAGCTL 226
            GE++  +  +    +  A+  +EAAG  +
Sbjct: 110 AGEVTTPVTVRGLRVTKGARAAIEAAGGKI 139


>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p)
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 141

 Score =  112 bits (282), Expect = 7e-32
 Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 13/152 (8%)

Query: 78  NLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKL 137
           +L P PGSRK  KR GRG   G   + G G +GQKSRSG G    FEGG+  L  R+PK 
Sbjct: 2   DLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKR 60

Query: 138 RGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGD 197
                G +     Y  V L  ++    LE      +TL+   L+      +  P+K+L  
Sbjct: 61  -----GFNNVGTTYEVVKLSQLQ---DLEDTTFDRDTLEAYRLVR----RKNRPVKLLAS 108

Query: 198 GELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 229
           GE+S+ +     A S +A + +EAAG  + + 
Sbjct: 109 GEISRAVTVHVDAASAAAIKAVEAAGGRVVLP 140


>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus
           thermophilus [TaxId: 274]}
          Length = 146

 Score =  108 bits (270), Expect = 5e-30
 Identities = 63/154 (40%), Positives = 79/154 (51%), Gaps = 12/154 (7%)

Query: 78  NLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRGQKSRSGPGVRK-GFEGGQMPLYRRIPK 136
           +L P PG+ KR KR GRG  +G G +   G +GQKSRSG       FEGG+     R+PK
Sbjct: 1   DLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPK 60

Query: 137 LRGI-AGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKIL 195
                        P+Y  VNLKD+         EV+ E L + GL+      +   LKIL
Sbjct: 61  RGMQGQVPGEIKRPRYQGVNLKDLARFEG----EVTPELLVRAGLLK-----KGYRLKIL 111

Query: 196 GDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 229
           G+GE  K L   A AFS SA EKL+AAG    +L
Sbjct: 112 GEGEA-KPLKVVAHAFSKSALEKLKAAGGEPVLL 144


>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score = 85.8 bits (212), Expect = 1e-21
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 17/157 (10%)

Query: 85  SRKRGKRKGRGIAAGQG-NSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGG 143
           S+K+ +R  R    G   N  G G RG +  +G          +   +  + K       
Sbjct: 2   SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKH------EFHNHEPLGKSGFKRPQ 55

Query: 144 MHAGLPKYVPVNLKDIEAAGFLEG------DEVSLETLKKKGLINPSGRERKLPLKILGD 197
                   + V   D               D      ++          +    +K+LG 
Sbjct: 56  KVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEA----DDADYVKVLGA 111

Query: 198 GELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKK 234
           G++  +L   A  FS  A+EK+E AG ++ +    ++
Sbjct: 112 GQVRHELTLIADDFSEGAREKVEGAGGSVELTDLGEE 148


>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 115

 Score = 56.3 bits (136), Expect = 5e-11
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 190 LPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTV 228
           +P K+LG G L K +   A  FS +A+ K++  G  +++
Sbjct: 60  VPGKVLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAVSL 98


>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio
           parahaemolyticus [TaxId: 670]}
          Length = 93

 Score = 25.8 bits (57), Expect = 2.3
 Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 1/28 (3%)

Query: 211 FSTSAKEKLEAAGCTLTV-LPGRKKWVK 237
           F T A E++      L V   G   W  
Sbjct: 36  FGTQAPERMTVVKGALVVKRVGEADWTT 63


>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 262

 Score = 26.9 bits (59), Expect = 2.9
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 6/95 (6%)

Query: 51  VLNQAASASASAIVGSGPVTNVRFRLNNLGPQPGSRKRGKRKGRGIAAGQGNSCGFGMRG 110
           + N        A+VG G  +N               K   +       G+     F  +G
Sbjct: 141 LKNSWKDLDI-AVVGIGDFSNKGKHQWLDMLTEDDFKELTKVK---TVGEICCRFFDSKG 196

Query: 111 QKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMH 145
           ++      +++      +   + IP+   +A G  
Sbjct: 197 KEVYEN--LQERTIAISLEDLKNIPQSLAVAYGDT 229


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 927,686
Number of extensions: 42959
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 11
Length of query: 266
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,254,276
Effective search space: 228278232
Effective search space used: 228278232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.2 bits)